Multiple sequence alignment - TraesCS7B01G085200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G085200 chr7B 100.000 2847 0 0 3588 6434 97200949 97198103 0.000000e+00 5258.0
1 TraesCS7B01G085200 chr7B 100.000 1850 0 0 1478 3327 97203059 97201210 0.000000e+00 3417.0
2 TraesCS7B01G085200 chr7B 100.000 1047 0 0 1 1047 97204536 97203490 0.000000e+00 1934.0
3 TraesCS7B01G085200 chr7B 88.889 108 6 2 3884 3991 97200543 97200442 1.880000e-25 128.0
4 TraesCS7B01G085200 chr7B 88.889 108 6 2 3994 4095 97200653 97200546 1.880000e-25 128.0
5 TraesCS7B01G085200 chr7A 94.935 1856 68 16 1478 3327 134517670 134515835 0.000000e+00 2883.0
6 TraesCS7B01G085200 chr7A 93.047 1999 68 24 3591 5572 134515786 134513842 0.000000e+00 2856.0
7 TraesCS7B01G085200 chr7A 94.492 472 12 7 580 1047 134518227 134517766 0.000000e+00 715.0
8 TraesCS7B01G085200 chr7A 91.899 395 21 5 1674 2068 651086577 651086960 5.670000e-150 542.0
9 TraesCS7B01G085200 chr7A 90.796 402 26 5 5975 6370 134513581 134513185 1.590000e-145 527.0
10 TraesCS7B01G085200 chr7A 94.652 187 10 0 5654 5840 134513809 134513623 2.270000e-74 291.0
11 TraesCS7B01G085200 chr7A 93.694 111 6 1 3881 3991 134515411 134515302 1.440000e-36 165.0
12 TraesCS7B01G085200 chr7A 82.653 98 14 3 2 98 91206072 91206167 4.130000e-12 84.2
13 TraesCS7B01G085200 chr7A 91.228 57 4 1 4039 4094 134515468 134515412 6.920000e-10 76.8
14 TraesCS7B01G085200 chr7A 86.154 65 9 0 6184 6248 46625705 46625769 3.220000e-08 71.3
15 TraesCS7B01G085200 chr7A 86.154 65 9 0 6184 6248 46679031 46679095 3.220000e-08 71.3
16 TraesCS7B01G085200 chr7A 100.000 31 0 0 5944 5974 134513626 134513596 2.510000e-04 58.4
17 TraesCS7B01G085200 chr7D 93.532 1608 61 20 4251 5850 135363086 135361514 0.000000e+00 2353.0
18 TraesCS7B01G085200 chr7D 97.494 1197 18 5 2132 3327 135364924 135363739 0.000000e+00 2034.0
19 TraesCS7B01G085200 chr7D 96.497 628 16 2 3590 4212 135363714 135363088 0.000000e+00 1033.0
20 TraesCS7B01G085200 chr7D 94.681 658 25 7 1478 2132 135365602 135364952 0.000000e+00 1013.0
21 TraesCS7B01G085200 chr7D 84.284 929 73 26 136 1047 135366570 135365698 0.000000e+00 839.0
22 TraesCS7B01G085200 chr7D 92.593 108 7 1 3884 3991 135363311 135363205 3.110000e-33 154.0
23 TraesCS7B01G085200 chr7D 91.071 112 9 1 5837 5948 83802022 83801912 4.020000e-32 150.0
24 TraesCS7B01G085200 chr7D 88.889 108 6 2 3994 4095 135363421 135363314 1.880000e-25 128.0
25 TraesCS7B01G085200 chr7D 90.526 95 9 0 6249 6343 135361306 135361212 6.770000e-25 126.0
26 TraesCS7B01G085200 chr7D 78.448 116 22 3 1 115 125840950 125841063 8.950000e-09 73.1
27 TraesCS7B01G085200 chr7D 92.683 41 1 1 5983 6021 135361419 135361379 2.510000e-04 58.4
28 TraesCS7B01G085200 chr6A 91.139 395 24 5 1674 2068 12896452 12896069 5.710000e-145 525.0
29 TraesCS7B01G085200 chr6A 84.507 71 9 2 93 161 456773530 456773600 1.160000e-07 69.4
30 TraesCS7B01G085200 chr6A 84.000 75 5 5 6176 6248 14204943 14205012 1.500000e-06 65.8
31 TraesCS7B01G085200 chr4A 90.886 395 25 6 1674 2068 440712033 440711650 2.660000e-143 520.0
32 TraesCS7B01G085200 chr3B 92.857 112 6 2 5839 5950 644018988 644019097 1.860000e-35 161.0
33 TraesCS7B01G085200 chr3B 86.139 101 13 1 1 101 631966618 631966519 2.450000e-19 108.0
34 TraesCS7B01G085200 chr3B 81.818 132 18 6 1 129 631966724 631966596 8.820000e-19 106.0
35 TraesCS7B01G085200 chr1A 90.598 117 10 1 5839 5955 19894973 19894858 3.110000e-33 154.0
36 TraesCS7B01G085200 chr1A 83.654 104 14 2 29 130 103621688 103621790 1.910000e-15 95.3
37 TraesCS7B01G085200 chr1A 78.992 119 19 6 1 119 331519847 331519959 6.920000e-10 76.8
38 TraesCS7B01G085200 chr6B 90.517 116 10 1 5839 5954 469780416 469780530 1.120000e-32 152.0
39 TraesCS7B01G085200 chr6B 87.640 89 9 2 6176 6263 514831755 514831668 1.140000e-17 102.0
40 TraesCS7B01G085200 chr5B 91.743 109 8 1 5839 5947 230778769 230778876 4.020000e-32 150.0
41 TraesCS7B01G085200 chr5B 78.740 127 19 7 1 125 42942312 42942192 1.920000e-10 78.7
42 TraesCS7B01G085200 chr4B 90.909 110 8 2 5838 5947 636982871 636982764 5.200000e-31 147.0
43 TraesCS7B01G085200 chr2D 90.909 110 9 1 5838 5947 194731109 194731001 5.200000e-31 147.0
44 TraesCS7B01G085200 chr2D 81.022 137 12 10 1 130 329154510 329154381 5.310000e-16 97.1
45 TraesCS7B01G085200 chr1D 89.744 117 9 3 5831 5947 342833045 342832932 5.200000e-31 147.0
46 TraesCS7B01G085200 chr2A 86.466 133 15 3 5815 5947 586908457 586908586 6.720000e-30 143.0
47 TraesCS7B01G085200 chr2A 100.000 35 0 0 135 169 513824860 513824894 1.500000e-06 65.8
48 TraesCS7B01G085200 chr5A 85.567 97 12 2 2 98 77362188 77362094 4.100000e-17 100.0
49 TraesCS7B01G085200 chr1B 85.135 74 8 3 6175 6248 546501645 546501715 8.950000e-09 73.1
50 TraesCS7B01G085200 chr2B 77.119 118 21 5 3622 3736 792986561 792986447 5.390000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G085200 chr7B 97198103 97204536 6433 True 2173.000000 5258 95.555600 1 6434 5 chr7B.!!$R1 6433
1 TraesCS7B01G085200 chr7A 134513185 134518227 5042 True 946.525000 2883 94.105500 580 6370 8 chr7A.!!$R1 5790
2 TraesCS7B01G085200 chr7D 135361212 135366570 5358 True 859.822222 2353 92.353222 136 6343 9 chr7D.!!$R2 6207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 623 0.036294 GTCTTCTTCCACTTCCCGGG 60.036 60.000 16.85 16.85 0.00 5.73 F
1572 1591 0.827925 CGGCCAGCTCCTAGGATGTA 60.828 60.000 13.12 0.00 0.00 2.29 F
1979 2004 1.033574 TGGTTTGCGGGGTTTACAAG 58.966 50.000 0.00 0.00 0.00 3.16 F
2937 2991 1.200760 TGTGCAGTACCTGGAGGCAT 61.201 55.000 0.00 0.00 39.32 4.40 F
3694 3772 3.813529 ACATGTTTTAACAGCTCTCGC 57.186 42.857 0.00 0.00 43.04 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2523 2576 0.394352 CCTTGATTCCCCTCCCAACG 60.394 60.000 0.00 0.0 0.00 4.10 R
3234 3288 1.406205 GCTCAGAGCCTAGGACCAAAC 60.406 57.143 14.75 0.0 34.48 2.93 R
3812 3890 2.103153 ACCTGTTCCTTCACTCCAGA 57.897 50.000 0.00 0.0 0.00 3.86 R
4135 4221 3.118112 CCAGGATTGCAGTGTCTAAGGAT 60.118 47.826 0.00 0.0 0.00 3.24 R
5628 5745 0.106708 TCAAGTTCCAGAGTTGCGCT 59.893 50.000 9.73 0.0 38.36 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.322371 CTTTTCTGAAAGGCACGAGC 57.678 50.000 2.75 0.00 38.86 5.03
28 29 0.586319 TTTTCTGAAAGGCACGAGCG 59.414 50.000 2.75 0.00 43.41 5.03
29 30 0.531974 TTTCTGAAAGGCACGAGCGT 60.532 50.000 0.00 0.00 43.41 5.07
30 31 5.949276 CTTTTCTGAAAGGCACGAGCGTG 62.949 52.174 17.85 17.85 43.41 5.34
59 60 3.963665 CGGAAGCAAATTTGTGTCTTCA 58.036 40.909 25.37 0.00 35.32 3.02
60 61 4.549458 CGGAAGCAAATTTGTGTCTTCAT 58.451 39.130 25.37 4.68 35.32 2.57
61 62 4.383649 CGGAAGCAAATTTGTGTCTTCATG 59.616 41.667 25.37 18.06 35.32 3.07
62 63 5.531634 GGAAGCAAATTTGTGTCTTCATGA 58.468 37.500 25.37 0.00 35.32 3.07
63 64 5.632347 GGAAGCAAATTTGTGTCTTCATGAG 59.368 40.000 25.37 0.85 35.32 2.90
64 65 6.395426 AAGCAAATTTGTGTCTTCATGAGA 57.605 33.333 19.03 0.00 0.00 3.27
65 66 6.395426 AGCAAATTTGTGTCTTCATGAGAA 57.605 33.333 19.03 0.00 35.79 2.87
79 80 7.798596 CTTCATGAGAAGTAAATATGTGCCT 57.201 36.000 0.00 0.00 44.97 4.75
80 81 7.792374 TTCATGAGAAGTAAATATGTGCCTC 57.208 36.000 0.00 0.00 0.00 4.70
81 82 7.129457 TCATGAGAAGTAAATATGTGCCTCT 57.871 36.000 0.00 0.00 0.00 3.69
82 83 7.212976 TCATGAGAAGTAAATATGTGCCTCTC 58.787 38.462 3.30 3.30 0.00 3.20
83 84 5.592054 TGAGAAGTAAATATGTGCCTCTCG 58.408 41.667 5.45 0.00 0.00 4.04
84 85 4.372656 AGAAGTAAATATGTGCCTCTCGC 58.627 43.478 0.00 0.00 38.31 5.03
85 86 2.743938 AGTAAATATGTGCCTCTCGCG 58.256 47.619 0.00 0.00 42.08 5.87
86 87 2.361119 AGTAAATATGTGCCTCTCGCGA 59.639 45.455 9.26 9.26 42.08 5.87
87 88 2.309528 AAATATGTGCCTCTCGCGAA 57.690 45.000 11.33 0.02 42.08 4.70
88 89 2.309528 AATATGTGCCTCTCGCGAAA 57.690 45.000 11.33 0.00 42.08 3.46
89 90 2.309528 ATATGTGCCTCTCGCGAAAA 57.690 45.000 11.33 0.00 42.08 2.29
90 91 1.640428 TATGTGCCTCTCGCGAAAAG 58.360 50.000 11.33 10.79 42.08 2.27
91 92 1.021390 ATGTGCCTCTCGCGAAAAGG 61.021 55.000 25.56 25.56 42.08 3.11
92 93 2.047274 TGCCTCTCGCGAAAAGGG 60.047 61.111 28.74 20.11 42.08 3.95
93 94 2.264794 GCCTCTCGCGAAAAGGGA 59.735 61.111 28.74 15.07 39.67 4.20
94 95 1.375523 GCCTCTCGCGAAAAGGGAA 60.376 57.895 28.74 0.00 41.47 3.97
95 96 0.953960 GCCTCTCGCGAAAAGGGAAA 60.954 55.000 28.74 0.00 41.47 3.13
96 97 1.519408 CCTCTCGCGAAAAGGGAAAA 58.481 50.000 23.29 0.00 41.47 2.29
97 98 1.877443 CCTCTCGCGAAAAGGGAAAAA 59.123 47.619 23.29 0.00 41.47 1.94
119 120 8.996988 AAAAAGAAAACACGTTTTTCCTTTTC 57.003 26.923 19.87 10.62 41.02 2.29
120 121 6.384178 AAGAAAACACGTTTTTCCTTTTCG 57.616 33.333 21.60 0.00 42.26 3.46
121 122 5.701855 AGAAAACACGTTTTTCCTTTTCGA 58.298 33.333 21.60 0.00 42.26 3.71
122 123 5.798434 AGAAAACACGTTTTTCCTTTTCGAG 59.202 36.000 21.60 0.00 42.26 4.04
123 124 4.950434 AACACGTTTTTCCTTTTCGAGA 57.050 36.364 0.00 0.00 0.00 4.04
124 125 4.531659 ACACGTTTTTCCTTTTCGAGAG 57.468 40.909 0.00 0.00 0.00 3.20
125 126 3.311596 ACACGTTTTTCCTTTTCGAGAGG 59.688 43.478 9.93 9.93 35.53 3.69
126 127 2.289820 ACGTTTTTCCTTTTCGAGAGGC 59.710 45.455 11.07 0.00 34.17 4.70
127 128 2.289547 CGTTTTTCCTTTTCGAGAGGCA 59.710 45.455 11.07 0.00 34.17 4.75
128 129 3.629058 GTTTTTCCTTTTCGAGAGGCAC 58.371 45.455 11.07 3.54 34.17 5.01
129 130 2.631160 TTTCCTTTTCGAGAGGCACA 57.369 45.000 11.07 0.00 34.17 4.57
130 131 2.859165 TTCCTTTTCGAGAGGCACAT 57.141 45.000 11.07 0.00 34.17 3.21
131 132 2.386661 TCCTTTTCGAGAGGCACATC 57.613 50.000 11.07 0.00 34.17 3.06
132 133 1.002366 CCTTTTCGAGAGGCACATCG 58.998 55.000 4.24 0.31 40.26 3.84
133 134 0.371645 CTTTTCGAGAGGCACATCGC 59.628 55.000 1.74 0.00 38.79 4.58
134 135 1.351430 TTTTCGAGAGGCACATCGCG 61.351 55.000 0.00 0.00 43.84 5.87
157 158 1.019673 CAAATCCATGCCTCTCACGG 58.980 55.000 0.00 0.00 0.00 4.94
161 162 0.614697 TCCATGCCTCTCACGGAAGA 60.615 55.000 0.00 0.00 33.50 2.87
166 167 2.494059 TGCCTCTCACGGAAGAAAAAG 58.506 47.619 0.00 0.00 0.00 2.27
167 168 2.104111 TGCCTCTCACGGAAGAAAAAGA 59.896 45.455 0.00 0.00 0.00 2.52
169 170 3.753797 GCCTCTCACGGAAGAAAAAGAAT 59.246 43.478 0.00 0.00 0.00 2.40
170 171 4.378874 GCCTCTCACGGAAGAAAAAGAATG 60.379 45.833 0.00 0.00 0.00 2.67
171 172 4.757149 CCTCTCACGGAAGAAAAAGAATGT 59.243 41.667 0.00 0.00 0.00 2.71
172 173 5.334414 CCTCTCACGGAAGAAAAAGAATGTG 60.334 44.000 0.00 0.00 0.00 3.21
173 174 4.024048 TCTCACGGAAGAAAAAGAATGTGC 60.024 41.667 0.00 0.00 0.00 4.57
210 211 1.003718 AGGGAAGACCGAAAAGCCG 60.004 57.895 0.00 0.00 46.96 5.52
212 213 0.604511 GGGAAGACCGAAAAGCCGAA 60.605 55.000 0.00 0.00 36.97 4.30
213 214 0.796927 GGAAGACCGAAAAGCCGAAG 59.203 55.000 0.00 0.00 0.00 3.79
214 215 1.607251 GGAAGACCGAAAAGCCGAAGA 60.607 52.381 0.00 0.00 0.00 2.87
215 216 2.140717 GAAGACCGAAAAGCCGAAGAA 58.859 47.619 0.00 0.00 0.00 2.52
216 217 2.249844 AGACCGAAAAGCCGAAGAAA 57.750 45.000 0.00 0.00 0.00 2.52
217 218 1.871676 AGACCGAAAAGCCGAAGAAAC 59.128 47.619 0.00 0.00 0.00 2.78
218 219 1.600485 GACCGAAAAGCCGAAGAAACA 59.400 47.619 0.00 0.00 0.00 2.83
219 220 1.332686 ACCGAAAAGCCGAAGAAACAC 59.667 47.619 0.00 0.00 0.00 3.32
220 221 1.658968 CGAAAAGCCGAAGAAACACG 58.341 50.000 0.00 0.00 0.00 4.49
224 225 3.768468 AAAGCCGAAGAAACACGAAAA 57.232 38.095 0.00 0.00 0.00 2.29
249 250 9.776158 AAAAATCATTTAAAAACCGAAAACACC 57.224 25.926 0.00 0.00 0.00 4.16
252 253 9.990360 AATCATTTAAAAACCGAAAACACCTAT 57.010 25.926 0.00 0.00 0.00 2.57
280 286 5.391312 AAAATCAAATTTCGGAGGGAGTG 57.609 39.130 0.00 0.00 0.00 3.51
305 311 2.353030 CGTGACACGTGTCTGCGA 60.353 61.111 37.73 24.41 44.99 5.10
306 312 1.942223 CGTGACACGTGTCTGCGAA 60.942 57.895 37.73 24.11 44.99 4.70
307 313 1.558383 GTGACACGTGTCTGCGAAC 59.442 57.895 39.62 28.40 44.99 3.95
308 314 1.139947 TGACACGTGTCTGCGAACA 59.860 52.632 39.62 22.03 44.99 3.18
320 326 2.476051 CGAACAAGAGCGCGCAAT 59.524 55.556 35.10 18.82 0.00 3.56
325 331 1.510623 CAAGAGCGCGCAATGTGAC 60.511 57.895 35.10 14.26 0.00 3.67
332 338 4.175599 CGCAATGTGACGCTCTCT 57.824 55.556 0.00 0.00 0.00 3.10
333 339 2.449548 CGCAATGTGACGCTCTCTT 58.550 52.632 0.00 0.00 0.00 2.85
336 342 2.222596 CGCAATGTGACGCTCTCTTAAC 60.223 50.000 0.00 0.00 0.00 2.01
346 352 2.427506 GCTCTCTTAACCCACACCAAG 58.572 52.381 0.00 0.00 0.00 3.61
376 383 1.675116 GGGGCTTCCGAACAAGTACTC 60.675 57.143 0.00 0.00 0.00 2.59
377 384 1.675116 GGGCTTCCGAACAAGTACTCC 60.675 57.143 0.00 0.00 0.00 3.85
378 385 1.275573 GGCTTCCGAACAAGTACTCCT 59.724 52.381 0.00 0.00 0.00 3.69
379 386 2.289506 GGCTTCCGAACAAGTACTCCTT 60.290 50.000 0.00 0.00 0.00 3.36
380 387 3.056322 GGCTTCCGAACAAGTACTCCTTA 60.056 47.826 0.00 0.00 0.00 2.69
381 388 4.562143 GGCTTCCGAACAAGTACTCCTTAA 60.562 45.833 0.00 0.00 0.00 1.85
382 389 5.176592 GCTTCCGAACAAGTACTCCTTAAT 58.823 41.667 0.00 0.00 0.00 1.40
383 390 5.642491 GCTTCCGAACAAGTACTCCTTAATT 59.358 40.000 0.00 0.00 0.00 1.40
384 391 6.815142 GCTTCCGAACAAGTACTCCTTAATTA 59.185 38.462 0.00 0.00 0.00 1.40
385 392 7.332678 GCTTCCGAACAAGTACTCCTTAATTAA 59.667 37.037 0.00 0.00 0.00 1.40
386 393 9.379791 CTTCCGAACAAGTACTCCTTAATTAAT 57.620 33.333 0.00 0.00 0.00 1.40
395 402 7.783042 AGTACTCCTTAATTAATTGCTCTCGT 58.217 34.615 11.05 4.09 0.00 4.18
408 415 4.227512 TGCTCTCGTCGTAAGTTGTAAA 57.772 40.909 0.00 0.00 39.48 2.01
409 416 4.801891 TGCTCTCGTCGTAAGTTGTAAAT 58.198 39.130 0.00 0.00 39.48 1.40
432 442 2.373540 AAAGTTGCTCACGCCGTATA 57.626 45.000 0.00 0.00 34.43 1.47
443 453 2.637383 GCCGTATAGGAGCTCCGGG 61.637 68.421 26.95 22.32 45.00 5.73
448 458 0.542232 TATAGGAGCTCCGGGAAGGC 60.542 60.000 26.95 0.00 42.08 4.35
449 459 2.319410 ATAGGAGCTCCGGGAAGGCT 62.319 60.000 26.95 10.29 42.08 4.58
450 460 2.531483 TAGGAGCTCCGGGAAGGCTT 62.531 60.000 26.95 8.84 42.08 4.35
451 461 2.124942 GAGCTCCGGGAAGGCTTG 60.125 66.667 3.46 0.00 40.77 4.01
452 462 4.416738 AGCTCCGGGAAGGCTTGC 62.417 66.667 10.64 10.64 40.77 4.01
453 463 4.416738 GCTCCGGGAAGGCTTGCT 62.417 66.667 18.47 0.00 40.77 3.91
456 466 2.282462 CCGGGAAGGCTTGCTGTT 60.282 61.111 23.59 0.00 0.00 3.16
482 492 4.498520 CGAGCACGGTCGCCAGAT 62.499 66.667 5.64 0.00 35.72 2.90
483 493 2.805546 GAGCACGGTCGCCAGATA 59.194 61.111 0.00 0.00 0.00 1.98
484 494 1.364171 GAGCACGGTCGCCAGATAT 59.636 57.895 0.00 0.00 0.00 1.63
485 495 0.249489 GAGCACGGTCGCCAGATATT 60.249 55.000 0.00 0.00 0.00 1.28
486 496 0.530650 AGCACGGTCGCCAGATATTG 60.531 55.000 0.00 0.00 0.00 1.90
532 542 2.527867 GCAACCCGTGAACGTCGTT 61.528 57.895 11.08 11.08 37.74 3.85
533 543 2.008328 CAACCCGTGAACGTCGTTT 58.992 52.632 12.67 0.00 37.74 3.60
534 544 0.374410 CAACCCGTGAACGTCGTTTT 59.626 50.000 12.67 0.00 37.74 2.43
535 545 1.085893 AACCCGTGAACGTCGTTTTT 58.914 45.000 12.67 0.00 37.74 1.94
564 574 1.846712 GCCTTCTGGAGTTCTGGGCT 61.847 60.000 0.00 0.00 35.73 5.19
566 576 0.676151 CTTCTGGAGTTCTGGGCTGC 60.676 60.000 0.00 0.00 0.00 5.25
613 623 0.036294 GTCTTCTTCCACTTCCCGGG 60.036 60.000 16.85 16.85 0.00 5.73
978 995 2.505777 CTCTCGACAGCGCCACAG 60.506 66.667 2.29 0.00 37.46 3.66
1525 1544 2.613977 CCAAGTGCTCGTCTCCATTTCT 60.614 50.000 0.00 0.00 0.00 2.52
1570 1589 1.190833 ATCGGCCAGCTCCTAGGATG 61.191 60.000 13.12 8.76 0.00 3.51
1571 1590 2.136878 CGGCCAGCTCCTAGGATGT 61.137 63.158 13.12 0.00 0.00 3.06
1572 1591 0.827925 CGGCCAGCTCCTAGGATGTA 60.828 60.000 13.12 0.00 0.00 2.29
1573 1592 1.650528 GGCCAGCTCCTAGGATGTAT 58.349 55.000 13.12 0.00 0.00 2.29
1597 1618 2.467826 GCTTGCGGCTGGAGATCAC 61.468 63.158 0.00 0.00 38.06 3.06
1598 1619 1.078918 CTTGCGGCTGGAGATCACA 60.079 57.895 0.00 0.00 0.00 3.58
1631 1652 1.296056 GGACTACGCGGTGCACAATT 61.296 55.000 20.43 1.79 0.00 2.32
1654 1675 1.750778 AGCGGTTTATGGCATCCTTTG 59.249 47.619 1.65 0.00 0.00 2.77
1681 1704 2.092807 TGCTGCTAATTGAGATGGCTGA 60.093 45.455 0.00 0.00 0.00 4.26
1758 1781 4.947388 GGTCAAATATAAACTGTGGGAGCA 59.053 41.667 0.00 0.00 0.00 4.26
1793 1816 5.825593 TCAGTTTGGACTTTGGAGTAGAT 57.174 39.130 0.00 0.00 35.88 1.98
1818 1841 4.781087 TGTACAAGCAAACTAGAGGGGTAT 59.219 41.667 0.00 0.00 0.00 2.73
1824 1847 4.042934 AGCAAACTAGAGGGGTATTTGTGT 59.957 41.667 0.00 0.00 33.70 3.72
1979 2004 1.033574 TGGTTTGCGGGGTTTACAAG 58.966 50.000 0.00 0.00 0.00 3.16
2075 2100 6.310764 TGGAAAATATCATTGTTGCCCATT 57.689 33.333 0.00 0.00 0.00 3.16
2234 2287 7.551974 AGAAACTGAACCTGACATTCATGATAG 59.448 37.037 0.00 0.00 35.57 2.08
2253 2306 5.357878 TGATAGCTTGTTTAGGAGCAATTGG 59.642 40.000 7.72 0.00 41.31 3.16
2254 2307 2.232208 AGCTTGTTTAGGAGCAATTGGC 59.768 45.455 7.72 0.00 41.31 4.52
2269 2322 1.697284 TTGGCATGGCAACTACAACA 58.303 45.000 29.00 6.25 37.61 3.33
2298 2351 7.706159 TGTACTGATCATTTTATTGGTCATGC 58.294 34.615 0.00 0.00 36.21 4.06
2299 2352 7.557358 TGTACTGATCATTTTATTGGTCATGCT 59.443 33.333 0.00 0.00 36.21 3.79
2300 2353 7.414222 ACTGATCATTTTATTGGTCATGCTT 57.586 32.000 0.00 0.00 36.21 3.91
2301 2354 7.844009 ACTGATCATTTTATTGGTCATGCTTT 58.156 30.769 0.00 0.00 36.21 3.51
2302 2355 7.762615 ACTGATCATTTTATTGGTCATGCTTTG 59.237 33.333 0.00 0.00 36.21 2.77
2403 2456 4.821532 ATCTGAAATTCCTAATGGCCCT 57.178 40.909 0.00 0.00 0.00 5.19
2523 2576 4.409187 TGGAATACCCAACTTTAACACCC 58.591 43.478 0.00 0.00 43.29 4.61
2641 2694 1.543802 GACAAAAATCCGGCCACATCA 59.456 47.619 2.24 0.00 0.00 3.07
2937 2991 1.200760 TGTGCAGTACCTGGAGGCAT 61.201 55.000 0.00 0.00 39.32 4.40
3005 3059 4.469586 TGGTGATTCACTTCTGGTATGCTA 59.530 41.667 16.02 0.00 34.40 3.49
3010 3064 7.710907 GTGATTCACTTCTGGTATGCTACATAA 59.289 37.037 9.59 0.00 0.00 1.90
3234 3288 9.184062 CATATGAAATTTTCCCGACAATATGTG 57.816 33.333 6.68 0.00 0.00 3.21
3620 3698 9.760660 GCTACTTTGATGATAAACAGTGTAAAG 57.239 33.333 0.00 2.80 0.00 1.85
3694 3772 3.813529 ACATGTTTTAACAGCTCTCGC 57.186 42.857 0.00 0.00 43.04 5.03
3812 3890 9.706691 TTTCTGAATTTCTGTCTACGTAATTCT 57.293 29.630 15.13 0.00 36.60 2.40
4122 4207 6.651755 AGCAAACAATTCAACTCTTTTGTG 57.348 33.333 0.00 0.00 32.90 3.33
4135 4221 6.189677 ACTCTTTTGTGTCGTTTGATTTCA 57.810 33.333 0.00 0.00 0.00 2.69
4212 4298 9.582431 TGAACACAGCTATAGAAATTACTGTAC 57.418 33.333 3.21 3.01 36.28 2.90
4434 4520 8.522830 CCACACATATTCTTATGGTGTTTCTTT 58.477 33.333 0.00 0.00 39.69 2.52
4493 4579 1.281419 TACGCCATCTTTCAGGGGAA 58.719 50.000 0.00 0.00 40.00 3.97
4624 4710 6.491403 ACACTCTTTTCTGCATTAGTTTCCAT 59.509 34.615 0.00 0.00 0.00 3.41
4629 4715 8.084073 TCTTTTCTGCATTAGTTTCCATCTTTG 58.916 33.333 0.00 0.00 0.00 2.77
4638 4724 7.883391 TTAGTTTCCATCTTTGTAACAACCA 57.117 32.000 0.00 0.00 0.00 3.67
4639 4725 6.976934 AGTTTCCATCTTTGTAACAACCAT 57.023 33.333 0.00 0.00 0.00 3.55
4706 4792 6.544928 TGAGATGTGCCTTTACAGAAGATA 57.455 37.500 0.00 0.00 33.44 1.98
4707 4793 7.129457 TGAGATGTGCCTTTACAGAAGATAT 57.871 36.000 0.00 0.00 33.44 1.63
4825 4920 4.202131 GGACCCCTCGTATTTCTAGAAGTG 60.202 50.000 10.55 0.69 0.00 3.16
4829 4924 5.986135 CCCCTCGTATTTCTAGAAGTGAATG 59.014 44.000 10.55 0.00 0.00 2.67
4833 4928 7.759886 CCTCGTATTTCTAGAAGTGAATGTCAA 59.240 37.037 10.55 0.00 0.00 3.18
4834 4929 9.140286 CTCGTATTTCTAGAAGTGAATGTCAAA 57.860 33.333 10.55 0.00 0.00 2.69
5013 5108 4.927978 ATCTCTGACCTATCTTTCCACG 57.072 45.455 0.00 0.00 0.00 4.94
5054 5149 8.667987 TTTATTTCGTTCTCATGTTAATGTGC 57.332 30.769 0.00 0.00 35.15 4.57
5058 5153 2.036958 TCTCATGTTAATGTGCCCGG 57.963 50.000 0.00 0.00 35.15 5.73
5224 5326 1.067915 CGTTTAACAACCCATGCCTGG 60.068 52.381 0.13 0.13 42.73 4.45
5247 5349 3.954258 CACTTTCCCAGGACTTTGAAGTT 59.046 43.478 0.00 0.00 39.88 2.66
5302 5407 0.936764 CGGTCGATTCTCAGCATCCG 60.937 60.000 0.00 0.00 0.00 4.18
5394 5499 3.739810 CCAAGTATGATGAGATGCTCACG 59.260 47.826 0.00 0.00 43.63 4.35
5454 5559 4.638421 TGACTGTTCACAACTTTTCGGAAT 59.362 37.500 0.00 0.00 0.00 3.01
5456 5561 4.036380 ACTGTTCACAACTTTTCGGAATCC 59.964 41.667 0.00 0.00 0.00 3.01
5503 5608 3.253188 TCTGATGGCTTGTACAGTTTTGC 59.747 43.478 0.00 0.00 0.00 3.68
5533 5638 2.239150 AGGCCTCGTTAGAGTCTGACTA 59.761 50.000 10.86 1.62 42.86 2.59
5553 5658 8.026396 TGACTAGAAGTGGTAAAGTAAAAGGT 57.974 34.615 0.00 0.00 0.00 3.50
5573 5678 9.636789 AAAAGGTTATGTAGGAAAACTAGTTGT 57.363 29.630 9.34 2.64 30.77 3.32
5574 5679 8.617290 AAGGTTATGTAGGAAAACTAGTTGTG 57.383 34.615 9.34 0.00 30.77 3.33
5575 5680 7.970102 AGGTTATGTAGGAAAACTAGTTGTGA 58.030 34.615 9.34 0.00 30.77 3.58
5576 5681 8.434392 AGGTTATGTAGGAAAACTAGTTGTGAA 58.566 33.333 9.34 0.00 30.77 3.18
5577 5682 8.501580 GGTTATGTAGGAAAACTAGTTGTGAAC 58.498 37.037 9.34 5.31 30.77 3.18
5578 5683 9.048446 GTTATGTAGGAAAACTAGTTGTGAACA 57.952 33.333 9.34 10.56 30.77 3.18
5598 5715 1.599542 AGTGAAACAAGAGCGCAACTC 59.400 47.619 11.47 0.00 42.92 3.01
5607 5724 2.810439 GAGCGCAACTCTGGATCTAT 57.190 50.000 11.47 0.00 42.62 1.98
5608 5725 2.402305 GAGCGCAACTCTGGATCTATG 58.598 52.381 11.47 0.00 42.62 2.23
5609 5726 1.069823 AGCGCAACTCTGGATCTATGG 59.930 52.381 11.47 0.00 0.00 2.74
5610 5727 1.069204 GCGCAACTCTGGATCTATGGA 59.931 52.381 0.30 0.00 0.00 3.41
5611 5728 2.865670 GCGCAACTCTGGATCTATGGAG 60.866 54.545 0.30 0.00 0.00 3.86
5612 5729 2.288702 CGCAACTCTGGATCTATGGAGG 60.289 54.545 0.00 0.00 0.00 4.30
5613 5730 2.703007 GCAACTCTGGATCTATGGAGGT 59.297 50.000 0.00 0.00 0.00 3.85
5614 5731 3.494048 GCAACTCTGGATCTATGGAGGTG 60.494 52.174 8.51 8.51 43.81 4.00
5615 5732 3.963374 CAACTCTGGATCTATGGAGGTGA 59.037 47.826 7.39 0.00 43.71 4.02
5616 5733 4.271807 ACTCTGGATCTATGGAGGTGAA 57.728 45.455 0.00 0.00 0.00 3.18
5617 5734 4.624913 ACTCTGGATCTATGGAGGTGAAA 58.375 43.478 0.00 0.00 0.00 2.69
5618 5735 4.653341 ACTCTGGATCTATGGAGGTGAAAG 59.347 45.833 0.00 0.00 0.00 2.62
5619 5736 4.624913 TCTGGATCTATGGAGGTGAAAGT 58.375 43.478 0.00 0.00 0.00 2.66
5620 5737 4.406972 TCTGGATCTATGGAGGTGAAAGTG 59.593 45.833 0.00 0.00 0.00 3.16
5621 5738 4.361783 TGGATCTATGGAGGTGAAAGTGA 58.638 43.478 0.00 0.00 0.00 3.41
5622 5739 4.782691 TGGATCTATGGAGGTGAAAGTGAA 59.217 41.667 0.00 0.00 0.00 3.18
5623 5740 5.250543 TGGATCTATGGAGGTGAAAGTGAAA 59.749 40.000 0.00 0.00 0.00 2.69
5624 5741 5.586643 GGATCTATGGAGGTGAAAGTGAAAC 59.413 44.000 0.00 0.00 0.00 2.78
5625 5742 5.560722 TCTATGGAGGTGAAAGTGAAACA 57.439 39.130 0.00 0.00 41.43 2.83
5626 5743 5.935945 TCTATGGAGGTGAAAGTGAAACAA 58.064 37.500 0.00 0.00 41.43 2.83
5627 5744 5.997746 TCTATGGAGGTGAAAGTGAAACAAG 59.002 40.000 0.00 0.00 41.43 3.16
5628 5745 4.229304 TGGAGGTGAAAGTGAAACAAGA 57.771 40.909 0.00 0.00 41.43 3.02
5629 5746 4.199310 TGGAGGTGAAAGTGAAACAAGAG 58.801 43.478 0.00 0.00 41.43 2.85
5630 5747 3.003793 GGAGGTGAAAGTGAAACAAGAGC 59.996 47.826 0.00 0.00 41.43 4.09
5631 5748 2.614057 AGGTGAAAGTGAAACAAGAGCG 59.386 45.455 0.00 0.00 41.43 5.03
5632 5749 2.376032 GTGAAAGTGAAACAAGAGCGC 58.624 47.619 0.00 0.00 41.43 5.92
5633 5750 2.013400 TGAAAGTGAAACAAGAGCGCA 58.987 42.857 11.47 0.00 41.43 6.09
5634 5751 2.421775 TGAAAGTGAAACAAGAGCGCAA 59.578 40.909 11.47 0.00 41.43 4.85
5635 5752 2.475200 AAGTGAAACAAGAGCGCAAC 57.525 45.000 11.47 2.78 41.43 4.17
5636 5753 1.668419 AGTGAAACAAGAGCGCAACT 58.332 45.000 11.47 5.61 41.43 3.16
5637 5754 1.599542 AGTGAAACAAGAGCGCAACTC 59.400 47.619 11.47 0.00 42.92 3.01
5644 5761 4.683432 GAGCGCAACTCTGGAACT 57.317 55.556 11.47 0.00 42.62 3.01
5645 5762 2.919971 GAGCGCAACTCTGGAACTT 58.080 52.632 11.47 0.00 42.62 2.66
5646 5763 0.514691 GAGCGCAACTCTGGAACTTG 59.485 55.000 11.47 0.00 42.62 3.16
5647 5764 0.106708 AGCGCAACTCTGGAACTTGA 59.893 50.000 11.47 0.00 0.00 3.02
5648 5765 1.160137 GCGCAACTCTGGAACTTGAT 58.840 50.000 0.30 0.00 0.00 2.57
5664 5781 2.205022 TGATTGGAGCAACTTCCTGG 57.795 50.000 0.00 0.00 38.12 4.45
5689 5806 7.360607 GGTCGTGCTTGTAAATATTGTAGTGTT 60.361 37.037 0.00 0.00 0.00 3.32
5693 5810 8.717821 GTGCTTGTAAATATTGTAGTGTTCTCA 58.282 33.333 0.00 0.00 0.00 3.27
5826 5944 6.317857 GTGCAATCCTTCTGAGAACAATAAC 58.682 40.000 0.00 0.00 0.00 1.89
5850 5972 7.061688 ACGAGAAATATAGTACTCCCTCTGTT 58.938 38.462 0.00 0.00 0.00 3.16
5851 5973 7.229106 ACGAGAAATATAGTACTCCCTCTGTTC 59.771 40.741 0.00 0.00 0.00 3.18
5852 5974 7.446013 CGAGAAATATAGTACTCCCTCTGTTCT 59.554 40.741 0.00 0.90 0.00 3.01
5853 5975 9.138596 GAGAAATATAGTACTCCCTCTGTTCTT 57.861 37.037 0.00 0.00 0.00 2.52
5854 5976 9.495382 AGAAATATAGTACTCCCTCTGTTCTTT 57.505 33.333 0.00 0.00 0.00 2.52
5896 6018 9.594478 AGACAACTAAAATTAAACTGTTTTGGG 57.406 29.630 11.48 0.00 32.25 4.12
5897 6019 9.373603 GACAACTAAAATTAAACTGTTTTGGGT 57.626 29.630 11.48 0.00 32.25 4.51
5898 6020 9.157104 ACAACTAAAATTAAACTGTTTTGGGTG 57.843 29.630 11.48 10.23 44.22 4.61
5899 6021 9.157104 CAACTAAAATTAAACTGTTTTGGGTGT 57.843 29.630 11.48 0.65 38.14 4.16
5900 6022 9.727859 AACTAAAATTAAACTGTTTTGGGTGTT 57.272 25.926 11.48 6.14 32.25 3.32
5910 6032 9.541143 AAACTGTTTTGGGTGTTATCTTAAATG 57.459 29.630 0.00 0.00 0.00 2.32
5911 6033 8.245195 ACTGTTTTGGGTGTTATCTTAAATGT 57.755 30.769 0.00 0.00 0.00 2.71
5912 6034 8.357402 ACTGTTTTGGGTGTTATCTTAAATGTC 58.643 33.333 0.00 0.00 0.00 3.06
5913 6035 8.472007 TGTTTTGGGTGTTATCTTAAATGTCT 57.528 30.769 0.00 0.00 0.00 3.41
5914 6036 9.575868 TGTTTTGGGTGTTATCTTAAATGTCTA 57.424 29.630 0.00 0.00 0.00 2.59
5918 6040 8.259049 TGGGTGTTATCTTAAATGTCTAAACG 57.741 34.615 0.00 0.00 0.00 3.60
5919 6041 7.334921 TGGGTGTTATCTTAAATGTCTAAACGG 59.665 37.037 0.00 0.00 0.00 4.44
5920 6042 7.335171 GGGTGTTATCTTAAATGTCTAAACGGT 59.665 37.037 0.00 0.00 0.00 4.83
5921 6043 8.385858 GGTGTTATCTTAAATGTCTAAACGGTC 58.614 37.037 0.00 0.00 0.00 4.79
5922 6044 9.148104 GTGTTATCTTAAATGTCTAAACGGTCT 57.852 33.333 0.00 0.00 0.00 3.85
5923 6045 9.715121 TGTTATCTTAAATGTCTAAACGGTCTT 57.285 29.630 0.00 0.00 0.00 3.01
5927 6049 9.715121 ATCTTAAATGTCTAAACGGTCTTACAA 57.285 29.630 0.00 0.00 0.00 2.41
5928 6050 9.545105 TCTTAAATGTCTAAACGGTCTTACAAA 57.455 29.630 0.00 0.00 0.00 2.83
5974 6096 8.781067 TCATTTGATTTACTTTGTTCTGAACG 57.219 30.769 15.18 4.46 0.00 3.95
5978 6100 6.198687 TGATTTACTTTGTTCTGAACGCTTG 58.801 36.000 15.18 8.18 0.00 4.01
5979 6101 5.804692 TTTACTTTGTTCTGAACGCTTGA 57.195 34.783 15.18 0.00 0.00 3.02
5980 6102 3.951979 ACTTTGTTCTGAACGCTTGAG 57.048 42.857 15.18 10.29 0.00 3.02
5981 6103 2.614057 ACTTTGTTCTGAACGCTTGAGG 59.386 45.455 15.18 4.55 0.00 3.86
5982 6104 2.613026 TTGTTCTGAACGCTTGAGGA 57.387 45.000 15.18 0.00 0.00 3.71
5983 6105 2.613026 TGTTCTGAACGCTTGAGGAA 57.387 45.000 15.18 0.00 0.00 3.36
5984 6106 2.912771 TGTTCTGAACGCTTGAGGAAA 58.087 42.857 15.18 0.00 0.00 3.13
5985 6107 2.872245 TGTTCTGAACGCTTGAGGAAAG 59.128 45.455 15.18 0.00 39.07 2.62
5987 6109 1.691976 TCTGAACGCTTGAGGAAAGGA 59.308 47.619 0.00 0.00 36.30 3.36
6026 6189 8.251026 ACATCTAGAAAATCGACACTTGATGTA 58.749 33.333 23.24 1.74 45.66 2.29
6038 6210 2.906389 ACTTGATGTAGCCTCACAGGAA 59.094 45.455 0.00 0.00 37.67 3.36
6043 6215 2.334977 TGTAGCCTCACAGGAAGGAAA 58.665 47.619 0.00 0.00 37.67 3.13
6045 6217 0.695347 AGCCTCACAGGAAGGAAAGG 59.305 55.000 0.00 0.00 37.67 3.11
6056 6228 0.912486 AAGGAAAGGGGGAGATGACG 59.088 55.000 0.00 0.00 0.00 4.35
6086 6258 4.215908 ACTTCAAAGTTTTCCTCCTTCCC 58.784 43.478 0.00 0.00 35.21 3.97
6087 6259 2.858745 TCAAAGTTTTCCTCCTTCCCG 58.141 47.619 0.00 0.00 0.00 5.14
6089 6261 2.956333 CAAAGTTTTCCTCCTTCCCGTT 59.044 45.455 0.00 0.00 0.00 4.44
6091 6263 1.202891 AGTTTTCCTCCTTCCCGTTGG 60.203 52.381 0.00 0.00 0.00 3.77
6092 6264 0.538746 TTTTCCTCCTTCCCGTTGGC 60.539 55.000 0.00 0.00 0.00 4.52
6093 6265 2.741486 TTTCCTCCTTCCCGTTGGCG 62.741 60.000 0.00 0.00 37.95 5.69
6181 6356 3.202467 GAGGACCTCACCTCGCTC 58.798 66.667 17.10 0.00 45.30 5.03
6211 6386 0.389391 ATTCATCGCTAGGTGGTCCG 59.611 55.000 0.00 0.00 39.05 4.79
6216 6391 0.968901 TCGCTAGGTGGTCCGTCAAT 60.969 55.000 0.00 0.00 39.05 2.57
6300 6475 5.564848 GCTGATACTGGTCCTTTTCAAAACC 60.565 44.000 0.00 0.00 0.00 3.27
6303 6478 2.686405 ACTGGTCCTTTTCAAAACCGTC 59.314 45.455 0.00 0.00 34.39 4.79
6306 6481 2.292569 GGTCCTTTTCAAAACCGTCTCC 59.707 50.000 0.00 0.00 0.00 3.71
6381 6556 3.861840 TCGGAAGAATAGAGTTGCTTGG 58.138 45.455 0.00 0.00 37.03 3.61
6382 6557 3.260884 TCGGAAGAATAGAGTTGCTTGGT 59.739 43.478 0.00 0.00 37.03 3.67
6383 6558 4.464951 TCGGAAGAATAGAGTTGCTTGGTA 59.535 41.667 0.00 0.00 37.03 3.25
6384 6559 5.046878 TCGGAAGAATAGAGTTGCTTGGTAA 60.047 40.000 0.00 0.00 37.03 2.85
6385 6560 5.817816 CGGAAGAATAGAGTTGCTTGGTAAT 59.182 40.000 0.00 0.00 0.00 1.89
6386 6561 6.018669 CGGAAGAATAGAGTTGCTTGGTAATC 60.019 42.308 0.00 0.00 0.00 1.75
6387 6562 7.051000 GGAAGAATAGAGTTGCTTGGTAATCT 58.949 38.462 0.00 0.00 0.00 2.40
6388 6563 7.554476 GGAAGAATAGAGTTGCTTGGTAATCTT 59.446 37.037 0.00 0.00 0.00 2.40
6389 6564 8.870075 AAGAATAGAGTTGCTTGGTAATCTTT 57.130 30.769 0.00 0.00 0.00 2.52
6390 6565 9.959721 AAGAATAGAGTTGCTTGGTAATCTTTA 57.040 29.630 0.00 0.00 0.00 1.85
6396 6571 9.959721 AGAGTTGCTTGGTAATCTTTATAGAAA 57.040 29.630 0.00 0.00 33.20 2.52
6413 6588 8.644318 TTATAGAAATAGTGTTTCTCTTCCGC 57.356 34.615 17.09 0.00 39.30 5.54
6414 6589 4.254492 AGAAATAGTGTTTCTCTTCCGCC 58.746 43.478 8.92 0.00 33.86 6.13
6415 6590 2.295253 ATAGTGTTTCTCTTCCGCCG 57.705 50.000 0.00 0.00 0.00 6.46
6416 6591 1.250328 TAGTGTTTCTCTTCCGCCGA 58.750 50.000 0.00 0.00 0.00 5.54
6417 6592 0.038159 AGTGTTTCTCTTCCGCCGAG 60.038 55.000 0.00 0.00 0.00 4.63
6418 6593 1.374252 TGTTTCTCTTCCGCCGAGC 60.374 57.895 0.00 0.00 0.00 5.03
6419 6594 1.374252 GTTTCTCTTCCGCCGAGCA 60.374 57.895 0.00 0.00 0.00 4.26
6420 6595 1.079819 TTTCTCTTCCGCCGAGCAG 60.080 57.895 0.00 0.00 0.00 4.24
6421 6596 1.532604 TTTCTCTTCCGCCGAGCAGA 61.533 55.000 0.00 0.00 0.00 4.26
6422 6597 1.938657 TTCTCTTCCGCCGAGCAGAG 61.939 60.000 0.00 0.00 35.09 3.35
6423 6598 4.135153 TCTTCCGCCGAGCAGAGC 62.135 66.667 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.398960 CGCTCGTGCCTTTCAGAAAAG 60.399 52.381 3.52 0.00 41.36 2.27
9 10 0.586319 CGCTCGTGCCTTTCAGAAAA 59.414 50.000 3.52 0.00 35.36 2.29
10 11 0.531974 ACGCTCGTGCCTTTCAGAAA 60.532 50.000 3.52 0.00 35.36 2.52
11 12 1.069090 ACGCTCGTGCCTTTCAGAA 59.931 52.632 3.52 0.00 35.36 3.02
12 13 1.664649 CACGCTCGTGCCTTTCAGA 60.665 57.895 9.55 0.00 39.39 3.27
13 14 2.856032 CACGCTCGTGCCTTTCAG 59.144 61.111 9.55 0.00 39.39 3.02
31 32 0.804989 AAATTTGCTTCCGCGAGAGG 59.195 50.000 8.23 4.88 39.65 3.69
32 33 1.197721 ACAAATTTGCTTCCGCGAGAG 59.802 47.619 18.12 5.93 39.65 3.20
33 34 1.069296 CACAAATTTGCTTCCGCGAGA 60.069 47.619 18.12 0.00 39.65 4.04
34 35 1.330306 CACAAATTTGCTTCCGCGAG 58.670 50.000 18.12 0.00 39.65 5.03
35 36 0.665835 ACACAAATTTGCTTCCGCGA 59.334 45.000 18.12 0.00 39.65 5.87
36 37 1.052287 GACACAAATTTGCTTCCGCG 58.948 50.000 18.12 0.00 39.65 6.46
37 38 2.422276 AGACACAAATTTGCTTCCGC 57.578 45.000 18.12 2.54 0.00 5.54
38 39 3.963665 TGAAGACACAAATTTGCTTCCG 58.036 40.909 23.13 10.65 35.34 4.30
39 40 5.531634 TCATGAAGACACAAATTTGCTTCC 58.468 37.500 23.13 11.26 35.34 3.46
40 41 6.441274 TCTCATGAAGACACAAATTTGCTTC 58.559 36.000 18.12 19.91 36.42 3.86
41 42 6.395426 TCTCATGAAGACACAAATTTGCTT 57.605 33.333 18.12 12.82 0.00 3.91
42 43 6.395426 TTCTCATGAAGACACAAATTTGCT 57.605 33.333 18.12 4.60 32.27 3.91
56 57 7.568349 AGAGGCACATATTTACTTCTCATGAA 58.432 34.615 0.00 0.00 0.00 2.57
57 58 7.129457 AGAGGCACATATTTACTTCTCATGA 57.871 36.000 0.00 0.00 0.00 3.07
58 59 6.145209 CGAGAGGCACATATTTACTTCTCATG 59.855 42.308 3.08 0.00 0.00 3.07
59 60 6.219473 CGAGAGGCACATATTTACTTCTCAT 58.781 40.000 3.08 0.00 0.00 2.90
60 61 5.592054 CGAGAGGCACATATTTACTTCTCA 58.408 41.667 3.08 0.00 0.00 3.27
61 62 4.446051 GCGAGAGGCACATATTTACTTCTC 59.554 45.833 0.00 0.00 42.87 2.87
62 63 4.372656 GCGAGAGGCACATATTTACTTCT 58.627 43.478 0.00 0.00 42.87 2.85
63 64 3.182572 CGCGAGAGGCACATATTTACTTC 59.817 47.826 0.00 0.00 43.84 3.01
64 65 3.123804 CGCGAGAGGCACATATTTACTT 58.876 45.455 0.00 0.00 43.84 2.24
65 66 2.361119 TCGCGAGAGGCACATATTTACT 59.639 45.455 3.71 0.00 43.84 2.24
66 67 2.739292 TCGCGAGAGGCACATATTTAC 58.261 47.619 3.71 0.00 43.84 2.01
67 68 3.446310 TTCGCGAGAGGCACATATTTA 57.554 42.857 9.59 0.00 43.84 1.40
68 69 2.309528 TTCGCGAGAGGCACATATTT 57.690 45.000 9.59 0.00 43.84 1.40
69 70 2.309528 TTTCGCGAGAGGCACATATT 57.690 45.000 9.59 0.00 43.84 1.28
70 71 2.205074 CTTTTCGCGAGAGGCACATAT 58.795 47.619 9.59 0.00 43.84 1.78
71 72 1.640428 CTTTTCGCGAGAGGCACATA 58.360 50.000 9.59 0.00 43.84 2.29
72 73 1.021390 CCTTTTCGCGAGAGGCACAT 61.021 55.000 22.45 0.00 43.84 3.21
73 74 1.667830 CCTTTTCGCGAGAGGCACA 60.668 57.895 22.45 0.00 43.84 4.57
74 75 2.391389 CCCTTTTCGCGAGAGGCAC 61.391 63.158 26.43 0.00 43.84 5.01
75 76 2.047274 CCCTTTTCGCGAGAGGCA 60.047 61.111 26.43 4.30 43.84 4.75
76 77 0.953960 TTTCCCTTTTCGCGAGAGGC 60.954 55.000 26.43 0.00 43.69 4.70
77 78 1.519408 TTTTCCCTTTTCGCGAGAGG 58.481 50.000 25.43 25.43 43.69 3.69
95 96 7.169476 TCGAAAAGGAAAAACGTGTTTTCTTTT 59.831 29.630 35.05 35.05 44.22 2.27
96 97 6.641723 TCGAAAAGGAAAAACGTGTTTTCTTT 59.358 30.769 25.65 25.65 41.45 2.52
97 98 6.151004 TCGAAAAGGAAAAACGTGTTTTCTT 58.849 32.000 17.58 17.58 41.45 2.52
98 99 5.701855 TCGAAAAGGAAAAACGTGTTTTCT 58.298 33.333 22.99 17.24 41.45 2.52
99 100 5.796437 TCTCGAAAAGGAAAAACGTGTTTTC 59.204 36.000 19.13 19.13 41.45 2.29
100 101 5.701855 TCTCGAAAAGGAAAAACGTGTTTT 58.298 33.333 4.94 6.66 43.88 2.43
101 102 5.299582 TCTCGAAAAGGAAAAACGTGTTT 57.700 34.783 2.60 2.60 0.00 2.83
102 103 4.201881 CCTCTCGAAAAGGAAAAACGTGTT 60.202 41.667 7.60 0.00 35.83 3.32
103 104 3.311596 CCTCTCGAAAAGGAAAAACGTGT 59.688 43.478 7.60 0.00 35.83 4.49
104 105 3.848554 GCCTCTCGAAAAGGAAAAACGTG 60.849 47.826 15.90 0.00 35.83 4.49
105 106 2.289820 GCCTCTCGAAAAGGAAAAACGT 59.710 45.455 15.90 0.00 35.83 3.99
106 107 2.289547 TGCCTCTCGAAAAGGAAAAACG 59.710 45.455 15.90 0.00 35.83 3.60
107 108 3.066203 TGTGCCTCTCGAAAAGGAAAAAC 59.934 43.478 15.90 8.94 35.83 2.43
108 109 3.283751 TGTGCCTCTCGAAAAGGAAAAA 58.716 40.909 15.90 0.00 35.83 1.94
109 110 2.925724 TGTGCCTCTCGAAAAGGAAAA 58.074 42.857 15.90 0.00 35.83 2.29
110 111 2.631160 TGTGCCTCTCGAAAAGGAAA 57.369 45.000 15.90 2.36 35.83 3.13
111 112 2.699954 GATGTGCCTCTCGAAAAGGAA 58.300 47.619 15.90 4.06 35.83 3.36
112 113 1.404181 CGATGTGCCTCTCGAAAAGGA 60.404 52.381 15.90 0.00 37.05 3.36
113 114 1.002366 CGATGTGCCTCTCGAAAAGG 58.998 55.000 8.80 8.80 37.05 3.11
114 115 0.371645 GCGATGTGCCTCTCGAAAAG 59.628 55.000 3.44 0.00 37.05 2.27
115 116 1.351430 CGCGATGTGCCTCTCGAAAA 61.351 55.000 0.00 0.00 42.08 2.29
116 117 1.805539 CGCGATGTGCCTCTCGAAA 60.806 57.895 0.00 0.00 42.08 3.46
117 118 2.202610 CGCGATGTGCCTCTCGAA 60.203 61.111 0.00 0.00 42.08 3.71
118 119 2.598619 CTTCGCGATGTGCCTCTCGA 62.599 60.000 10.88 0.00 42.08 4.04
119 120 2.202610 TTCGCGATGTGCCTCTCG 60.203 61.111 10.88 0.00 42.08 4.04
120 121 2.520904 GCTTCGCGATGTGCCTCTC 61.521 63.158 21.31 1.40 42.08 3.20
121 122 2.510238 GCTTCGCGATGTGCCTCT 60.510 61.111 21.31 0.00 42.08 3.69
122 123 1.911293 TTTGCTTCGCGATGTGCCTC 61.911 55.000 21.31 6.72 42.08 4.70
123 124 1.308069 ATTTGCTTCGCGATGTGCCT 61.308 50.000 21.31 6.96 42.08 4.75
124 125 0.863119 GATTTGCTTCGCGATGTGCC 60.863 55.000 21.31 7.38 42.08 5.01
125 126 0.863119 GGATTTGCTTCGCGATGTGC 60.863 55.000 21.31 19.61 41.47 4.57
126 127 0.447406 TGGATTTGCTTCGCGATGTG 59.553 50.000 21.31 11.15 0.00 3.21
127 128 1.064505 CATGGATTTGCTTCGCGATGT 59.935 47.619 21.31 3.38 0.00 3.06
128 129 1.750351 CATGGATTTGCTTCGCGATG 58.250 50.000 10.88 14.54 0.00 3.84
129 130 0.029834 GCATGGATTTGCTTCGCGAT 59.970 50.000 10.88 0.00 39.57 4.58
130 131 1.429021 GCATGGATTTGCTTCGCGA 59.571 52.632 3.71 3.71 39.57 5.87
131 132 1.587088 GGCATGGATTTGCTTCGCG 60.587 57.895 0.00 0.00 42.38 5.87
132 133 0.248784 GAGGCATGGATTTGCTTCGC 60.249 55.000 0.00 0.00 38.68 4.70
133 134 3.932459 GAGGCATGGATTTGCTTCG 57.068 52.632 0.00 0.00 38.68 3.79
134 135 2.098770 GTGAGAGGCATGGATTTGCTTC 59.901 50.000 0.00 0.80 46.00 3.86
144 145 2.099141 TTTCTTCCGTGAGAGGCATG 57.901 50.000 0.00 0.00 0.00 4.06
145 146 2.859165 TTTTCTTCCGTGAGAGGCAT 57.141 45.000 0.00 0.00 0.00 4.40
148 149 4.757149 ACATTCTTTTTCTTCCGTGAGAGG 59.243 41.667 0.00 0.00 0.00 3.69
154 155 4.918810 AAGCACATTCTTTTTCTTCCGT 57.081 36.364 0.00 0.00 0.00 4.69
179 180 3.197116 GGTCTTCCCTCGTCTTTGGATAA 59.803 47.826 0.00 0.00 0.00 1.75
188 189 1.711206 CTTTTCGGTCTTCCCTCGTC 58.289 55.000 0.00 0.00 0.00 4.20
189 190 0.320508 GCTTTTCGGTCTTCCCTCGT 60.321 55.000 0.00 0.00 0.00 4.18
194 195 0.796927 CTTCGGCTTTTCGGTCTTCC 59.203 55.000 0.00 0.00 0.00 3.46
195 196 1.792006 TCTTCGGCTTTTCGGTCTTC 58.208 50.000 0.00 0.00 0.00 2.87
224 225 9.168451 AGGTGTTTTCGGTTTTTAAATGATTTT 57.832 25.926 0.00 0.00 0.00 1.82
260 261 2.755103 GCACTCCCTCCGAAATTTGATT 59.245 45.455 0.00 0.00 0.00 2.57
262 263 1.613255 GGCACTCCCTCCGAAATTTGA 60.613 52.381 0.00 0.00 0.00 2.69
263 264 0.811281 GGCACTCCCTCCGAAATTTG 59.189 55.000 0.00 0.00 0.00 2.32
276 282 0.028902 GTGTCACGTTTTGGGCACTC 59.971 55.000 1.45 0.00 32.35 3.51
279 285 3.102985 CGTGTCACGTTTTGGGCA 58.897 55.556 17.30 0.00 36.74 5.36
305 311 1.081906 CACATTGCGCGCTCTTGTT 60.082 52.632 33.29 13.56 0.00 2.83
306 312 1.960763 TCACATTGCGCGCTCTTGT 60.961 52.632 33.29 26.80 0.00 3.16
307 313 1.510623 GTCACATTGCGCGCTCTTG 60.511 57.895 33.29 26.16 0.00 3.02
308 314 2.863153 GTCACATTGCGCGCTCTT 59.137 55.556 33.29 14.02 0.00 2.85
316 322 2.094417 GGTTAAGAGAGCGTCACATTGC 59.906 50.000 0.00 0.00 0.00 3.56
318 324 2.301870 TGGGTTAAGAGAGCGTCACATT 59.698 45.455 0.00 0.00 0.00 2.71
320 326 1.000506 GTGGGTTAAGAGAGCGTCACA 59.999 52.381 0.00 0.00 0.00 3.58
325 331 0.320374 TGGTGTGGGTTAAGAGAGCG 59.680 55.000 0.00 0.00 0.00 5.03
328 334 3.042682 TCACTTGGTGTGGGTTAAGAGA 58.957 45.455 0.00 0.00 46.20 3.10
332 338 1.847737 AGGTCACTTGGTGTGGGTTAA 59.152 47.619 0.00 0.00 46.20 2.01
333 339 1.513858 AGGTCACTTGGTGTGGGTTA 58.486 50.000 0.00 0.00 46.20 2.85
365 372 9.989869 GAGCAATTAATTAAGGAGTACTTGTTC 57.010 33.333 0.00 5.55 40.37 3.18
368 375 8.543774 CGAGAGCAATTAATTAAGGAGTACTTG 58.456 37.037 0.00 3.09 40.37 3.16
369 376 8.258708 ACGAGAGCAATTAATTAAGGAGTACTT 58.741 33.333 0.00 0.00 43.28 2.24
372 379 6.916387 CGACGAGAGCAATTAATTAAGGAGTA 59.084 38.462 0.00 0.00 0.00 2.59
376 383 5.968387 ACGACGAGAGCAATTAATTAAGG 57.032 39.130 0.00 0.15 0.00 2.69
377 384 8.116624 ACTTACGACGAGAGCAATTAATTAAG 57.883 34.615 0.00 0.00 0.00 1.85
378 385 8.377681 CAACTTACGACGAGAGCAATTAATTAA 58.622 33.333 0.00 0.00 0.00 1.40
379 386 7.543172 ACAACTTACGACGAGAGCAATTAATTA 59.457 33.333 0.00 0.00 0.00 1.40
380 387 6.367969 ACAACTTACGACGAGAGCAATTAATT 59.632 34.615 0.00 0.00 0.00 1.40
381 388 5.867716 ACAACTTACGACGAGAGCAATTAAT 59.132 36.000 0.00 0.00 0.00 1.40
382 389 5.224888 ACAACTTACGACGAGAGCAATTAA 58.775 37.500 0.00 0.00 0.00 1.40
383 390 4.801891 ACAACTTACGACGAGAGCAATTA 58.198 39.130 0.00 0.00 0.00 1.40
384 391 3.650139 ACAACTTACGACGAGAGCAATT 58.350 40.909 0.00 0.00 0.00 2.32
385 392 3.299340 ACAACTTACGACGAGAGCAAT 57.701 42.857 0.00 0.00 0.00 3.56
386 393 2.787601 ACAACTTACGACGAGAGCAA 57.212 45.000 0.00 0.00 0.00 3.91
423 433 2.259439 CGGAGCTCCTATACGGCGT 61.259 63.158 29.73 19.64 0.00 5.68
432 442 3.933542 AAGCCTTCCCGGAGCTCCT 62.934 63.158 29.73 6.10 35.30 3.69
443 453 1.288127 CCAGCAACAGCAAGCCTTC 59.712 57.895 0.00 0.00 0.00 3.46
448 458 0.602638 TCGGTACCAGCAACAGCAAG 60.603 55.000 13.54 0.00 0.00 4.01
449 459 0.602638 CTCGGTACCAGCAACAGCAA 60.603 55.000 13.54 0.00 0.00 3.91
450 460 1.005037 CTCGGTACCAGCAACAGCA 60.005 57.895 13.54 0.00 0.00 4.41
451 461 2.391389 GCTCGGTACCAGCAACAGC 61.391 63.158 23.37 12.22 36.82 4.40
452 462 1.005037 TGCTCGGTACCAGCAACAG 60.005 57.895 26.68 9.21 44.02 3.16
453 463 3.143338 TGCTCGGTACCAGCAACA 58.857 55.556 26.68 10.29 44.02 3.33
478 488 6.420604 ACTTTGTTTTTGAACGCCAATATCTG 59.579 34.615 0.00 0.00 34.23 2.90
479 489 6.420604 CACTTTGTTTTTGAACGCCAATATCT 59.579 34.615 0.00 0.00 34.23 1.98
480 490 6.346518 CCACTTTGTTTTTGAACGCCAATATC 60.347 38.462 0.00 0.00 34.23 1.63
481 491 5.465056 CCACTTTGTTTTTGAACGCCAATAT 59.535 36.000 0.00 0.00 34.23 1.28
482 492 4.806247 CCACTTTGTTTTTGAACGCCAATA 59.194 37.500 0.00 0.00 34.23 1.90
483 493 3.620821 CCACTTTGTTTTTGAACGCCAAT 59.379 39.130 0.00 0.00 34.23 3.16
484 494 2.996621 CCACTTTGTTTTTGAACGCCAA 59.003 40.909 0.00 0.00 0.00 4.52
485 495 2.611518 CCACTTTGTTTTTGAACGCCA 58.388 42.857 0.00 0.00 0.00 5.69
486 496 1.326245 GCCACTTTGTTTTTGAACGCC 59.674 47.619 0.00 0.00 0.00 5.68
487 497 1.996191 TGCCACTTTGTTTTTGAACGC 59.004 42.857 0.00 0.00 0.00 4.84
488 498 3.923461 TCTTGCCACTTTGTTTTTGAACG 59.077 39.130 0.00 0.00 0.00 3.95
489 499 4.092821 GGTCTTGCCACTTTGTTTTTGAAC 59.907 41.667 0.00 0.00 37.17 3.18
490 500 4.249661 GGTCTTGCCACTTTGTTTTTGAA 58.750 39.130 0.00 0.00 37.17 2.69
491 501 3.259374 TGGTCTTGCCACTTTGTTTTTGA 59.741 39.130 0.00 0.00 43.61 2.69
492 502 3.594134 TGGTCTTGCCACTTTGTTTTTG 58.406 40.909 0.00 0.00 43.61 2.44
493 503 3.860641 CTGGTCTTGCCACTTTGTTTTT 58.139 40.909 0.00 0.00 43.61 1.94
532 542 2.091541 CAGAAGGCGAGCCCATAAAAA 58.908 47.619 10.95 0.00 36.58 1.94
533 543 1.681780 CCAGAAGGCGAGCCCATAAAA 60.682 52.381 10.95 0.00 36.58 1.52
534 544 0.107214 CCAGAAGGCGAGCCCATAAA 60.107 55.000 10.95 0.00 36.58 1.40
535 545 0.980754 TCCAGAAGGCGAGCCCATAA 60.981 55.000 10.95 0.00 36.58 1.90
536 546 1.382557 TCCAGAAGGCGAGCCCATA 60.383 57.895 10.95 0.00 36.58 2.74
537 547 2.688666 TCCAGAAGGCGAGCCCAT 60.689 61.111 10.95 0.00 36.58 4.00
538 548 3.393970 CTCCAGAAGGCGAGCCCA 61.394 66.667 10.95 0.00 36.58 5.36
795 809 3.478274 GCAGGCAGGAGGAGGAGG 61.478 72.222 0.00 0.00 0.00 4.30
797 811 3.991924 GAGGCAGGCAGGAGGAGGA 62.992 68.421 0.00 0.00 0.00 3.71
930 946 2.725312 GCGAGGAGGTCAGCATGGA 61.725 63.158 0.00 0.00 36.16 3.41
1559 1578 2.938756 GCCATGCATACATCCTAGGAGC 60.939 54.545 18.34 14.79 32.87 4.70
1597 1618 3.058846 CGTAGTCCGGAGACATACAGATG 60.059 52.174 3.06 0.00 46.15 2.90
1598 1619 3.139850 CGTAGTCCGGAGACATACAGAT 58.860 50.000 3.06 0.00 46.15 2.90
1626 1647 3.616219 TGCCATAAACCGCTAGAATTGT 58.384 40.909 0.00 0.00 0.00 2.71
1631 1652 2.047061 AGGATGCCATAAACCGCTAGA 58.953 47.619 0.00 0.00 0.00 2.43
1654 1675 2.079158 TCTCAATTAGCAGCACACAGC 58.921 47.619 0.00 0.00 46.19 4.40
1655 1676 3.064958 CCATCTCAATTAGCAGCACACAG 59.935 47.826 0.00 0.00 0.00 3.66
1656 1677 3.011818 CCATCTCAATTAGCAGCACACA 58.988 45.455 0.00 0.00 0.00 3.72
1657 1678 2.223433 GCCATCTCAATTAGCAGCACAC 60.223 50.000 0.00 0.00 0.00 3.82
1681 1704 6.151049 ACCAATAATCATCCTAGTACAGGGT 58.849 40.000 10.33 2.23 45.58 4.34
1704 1727 6.408428 CGCCTTAAAACATTCAGATACGTAC 58.592 40.000 0.00 0.00 0.00 3.67
1706 1729 4.331717 CCGCCTTAAAACATTCAGATACGT 59.668 41.667 0.00 0.00 0.00 3.57
1707 1730 4.785341 GCCGCCTTAAAACATTCAGATACG 60.785 45.833 0.00 0.00 0.00 3.06
1708 1731 4.335594 AGCCGCCTTAAAACATTCAGATAC 59.664 41.667 0.00 0.00 0.00 2.24
1758 1781 2.092538 CCAAACTGATCTCCATGCTCCT 60.093 50.000 0.00 0.00 0.00 3.69
1793 1816 3.260884 CCCCTCTAGTTTGCTTGTACAGA 59.739 47.826 0.00 0.00 0.00 3.41
1818 1841 5.010516 CCTATTGGTTGGTCAATCACACAAA 59.989 40.000 0.00 0.00 38.24 2.83
1824 1847 5.772393 ACTACCTATTGGTTGGTCAATCA 57.228 39.130 3.58 0.00 46.05 2.57
1979 2004 5.163612 GCATCTCAACAGAAAGGGGAAATAC 60.164 44.000 0.00 0.00 30.24 1.89
2234 2287 2.029110 TGCCAATTGCTCCTAAACAAGC 60.029 45.455 0.00 0.00 42.00 4.01
2253 2306 0.597568 TGCTGTTGTAGTTGCCATGC 59.402 50.000 0.00 0.00 0.00 4.06
2254 2307 2.229543 ACATGCTGTTGTAGTTGCCATG 59.770 45.455 0.00 0.00 0.00 3.66
2255 2308 2.517959 ACATGCTGTTGTAGTTGCCAT 58.482 42.857 0.00 0.00 0.00 4.40
2256 2309 1.979855 ACATGCTGTTGTAGTTGCCA 58.020 45.000 0.00 0.00 0.00 4.92
2257 2310 3.074412 AGTACATGCTGTTGTAGTTGCC 58.926 45.455 0.00 0.00 33.00 4.52
2269 2322 7.557358 TGACCAATAAAATGATCAGTACATGCT 59.443 33.333 0.09 0.00 0.00 3.79
2292 2345 1.133790 CTAGCCCAAGCAAAGCATGAC 59.866 52.381 0.00 0.00 43.56 3.06
2302 2355 3.348119 ACTTTAAGCTTCTAGCCCAAGC 58.652 45.455 0.00 6.55 43.77 4.01
2366 2419 9.727627 GAATTTCAGATTCTTCATCACCATAAC 57.272 33.333 0.00 0.00 33.75 1.89
2403 2456 2.058798 GCTCGAAACGAAGATGTGTCA 58.941 47.619 0.00 0.00 34.74 3.58
2523 2576 0.394352 CCTTGATTCCCCTCCCAACG 60.394 60.000 0.00 0.00 0.00 4.10
2937 2991 6.561454 TGTACAGAGTAGATAGAGATACCCCA 59.439 42.308 0.00 0.00 0.00 4.96
3005 3059 7.551262 TGGAAGATATACAAAAGCACGTTATGT 59.449 33.333 0.00 0.00 0.00 2.29
3010 3064 7.391148 AAATGGAAGATATACAAAAGCACGT 57.609 32.000 0.00 0.00 0.00 4.49
3234 3288 1.406205 GCTCAGAGCCTAGGACCAAAC 60.406 57.143 14.75 0.00 34.48 2.93
3587 3641 9.713740 CTGTTTATCATCAAAGTAGCAAATCTC 57.286 33.333 0.00 0.00 0.00 2.75
3588 3642 9.236006 ACTGTTTATCATCAAAGTAGCAAATCT 57.764 29.630 0.00 0.00 0.00 2.40
3620 3698 8.905702 CACTTTTAACAGCAAATAATGACTGAC 58.094 33.333 0.00 0.00 36.94 3.51
3790 3868 7.759886 CCAGAGAATTACGTAGACAGAAATTCA 59.240 37.037 16.07 0.00 38.45 2.57
3812 3890 2.103153 ACCTGTTCCTTCACTCCAGA 57.897 50.000 0.00 0.00 0.00 3.86
4135 4221 3.118112 CCAGGATTGCAGTGTCTAAGGAT 60.118 47.826 0.00 0.00 0.00 3.24
4493 4579 3.243068 GGTGAACACGAAGCAATTCTTGT 60.243 43.478 0.00 0.00 35.34 3.16
4624 4710 8.574251 AATAGCACATATGGTTGTTACAAAGA 57.426 30.769 7.80 0.00 37.77 2.52
4779 4874 6.378848 TCCCCACAATAAGGCAATAAAGTTAC 59.621 38.462 0.00 0.00 0.00 2.50
4825 4920 8.538409 AAATTAGGAGCACAAATTTGACATTC 57.462 30.769 24.64 14.45 32.93 2.67
4829 4924 8.490355 CAAGAAAATTAGGAGCACAAATTTGAC 58.510 33.333 24.64 15.16 34.08 3.18
4833 4928 6.762333 AGCAAGAAAATTAGGAGCACAAATT 58.238 32.000 0.00 0.00 0.00 1.82
4834 4929 6.350629 AGCAAGAAAATTAGGAGCACAAAT 57.649 33.333 0.00 0.00 0.00 2.32
5054 5149 2.340328 GCTAAAGTTGGCACCCGGG 61.340 63.158 22.25 22.25 34.50 5.73
5224 5326 1.981256 TCAAAGTCCTGGGAAAGTGC 58.019 50.000 0.00 0.00 0.00 4.40
5394 5499 3.876589 TTTCTCGGTGCGGCAGACC 62.877 63.158 1.18 0.29 0.00 3.85
5454 5559 1.280133 CCTGGCATCAAGTCTCAAGGA 59.720 52.381 0.00 0.00 0.00 3.36
5456 5561 2.082231 CACCTGGCATCAAGTCTCAAG 58.918 52.381 0.00 0.00 0.00 3.02
5503 5608 6.821031 ACTCTAACGAGGCCTATATACTTG 57.179 41.667 4.42 0.00 41.71 3.16
5553 5658 9.268268 CTGTTCACAACTAGTTTTCCTACATAA 57.732 33.333 5.07 0.00 0.00 1.90
5572 5677 2.851008 GCGCTCTTGTTTCACTGTTCAC 60.851 50.000 0.00 0.00 0.00 3.18
5573 5678 1.330521 GCGCTCTTGTTTCACTGTTCA 59.669 47.619 0.00 0.00 0.00 3.18
5574 5679 1.330521 TGCGCTCTTGTTTCACTGTTC 59.669 47.619 9.73 0.00 0.00 3.18
5575 5680 1.378531 TGCGCTCTTGTTTCACTGTT 58.621 45.000 9.73 0.00 0.00 3.16
5576 5681 1.064060 GTTGCGCTCTTGTTTCACTGT 59.936 47.619 9.73 0.00 0.00 3.55
5577 5682 1.331756 AGTTGCGCTCTTGTTTCACTG 59.668 47.619 9.73 0.00 0.00 3.66
5578 5683 1.599542 GAGTTGCGCTCTTGTTTCACT 59.400 47.619 9.73 0.00 40.98 3.41
5598 5715 4.406972 TCACTTTCACCTCCATAGATCCAG 59.593 45.833 0.00 0.00 0.00 3.86
5599 5716 4.361783 TCACTTTCACCTCCATAGATCCA 58.638 43.478 0.00 0.00 0.00 3.41
5601 5718 6.173339 TGTTTCACTTTCACCTCCATAGATC 58.827 40.000 0.00 0.00 0.00 2.75
5603 5720 5.560722 TGTTTCACTTTCACCTCCATAGA 57.439 39.130 0.00 0.00 0.00 1.98
5604 5721 5.997746 TCTTGTTTCACTTTCACCTCCATAG 59.002 40.000 0.00 0.00 0.00 2.23
5606 5723 4.792068 TCTTGTTTCACTTTCACCTCCAT 58.208 39.130 0.00 0.00 0.00 3.41
5607 5724 4.199310 CTCTTGTTTCACTTTCACCTCCA 58.801 43.478 0.00 0.00 0.00 3.86
5608 5725 3.003793 GCTCTTGTTTCACTTTCACCTCC 59.996 47.826 0.00 0.00 0.00 4.30
5609 5726 3.303395 CGCTCTTGTTTCACTTTCACCTC 60.303 47.826 0.00 0.00 0.00 3.85
5610 5727 2.614057 CGCTCTTGTTTCACTTTCACCT 59.386 45.455 0.00 0.00 0.00 4.00
5611 5728 2.854805 GCGCTCTTGTTTCACTTTCACC 60.855 50.000 0.00 0.00 0.00 4.02
5612 5729 2.223249 TGCGCTCTTGTTTCACTTTCAC 60.223 45.455 9.73 0.00 0.00 3.18
5613 5730 2.013400 TGCGCTCTTGTTTCACTTTCA 58.987 42.857 9.73 0.00 0.00 2.69
5614 5731 2.755836 TGCGCTCTTGTTTCACTTTC 57.244 45.000 9.73 0.00 0.00 2.62
5615 5732 2.423538 AGTTGCGCTCTTGTTTCACTTT 59.576 40.909 9.73 0.00 0.00 2.66
5616 5733 2.017049 AGTTGCGCTCTTGTTTCACTT 58.983 42.857 9.73 0.00 0.00 3.16
5617 5734 1.599542 GAGTTGCGCTCTTGTTTCACT 59.400 47.619 9.73 0.00 40.98 3.41
5618 5735 2.024176 GAGTTGCGCTCTTGTTTCAC 57.976 50.000 9.73 0.00 40.98 3.18
5627 5744 0.514691 CAAGTTCCAGAGTTGCGCTC 59.485 55.000 9.73 1.40 44.45 5.03
5628 5745 0.106708 TCAAGTTCCAGAGTTGCGCT 59.893 50.000 9.73 0.00 38.36 5.92
5629 5746 1.160137 ATCAAGTTCCAGAGTTGCGC 58.840 50.000 0.00 0.00 38.36 6.09
5630 5747 2.095567 CCAATCAAGTTCCAGAGTTGCG 60.096 50.000 0.00 0.00 38.36 4.85
5631 5748 3.149196 TCCAATCAAGTTCCAGAGTTGC 58.851 45.455 0.00 0.00 38.36 4.17
5632 5749 3.190118 GCTCCAATCAAGTTCCAGAGTTG 59.810 47.826 0.00 0.00 39.57 3.16
5633 5750 3.181440 TGCTCCAATCAAGTTCCAGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
5634 5751 2.373169 TGCTCCAATCAAGTTCCAGAGT 59.627 45.455 0.00 0.00 0.00 3.24
5635 5752 3.063510 TGCTCCAATCAAGTTCCAGAG 57.936 47.619 0.00 0.00 0.00 3.35
5636 5753 3.149196 GTTGCTCCAATCAAGTTCCAGA 58.851 45.455 0.00 0.00 0.00 3.86
5637 5754 3.152341 AGTTGCTCCAATCAAGTTCCAG 58.848 45.455 0.00 0.00 0.00 3.86
5638 5755 3.228188 AGTTGCTCCAATCAAGTTCCA 57.772 42.857 0.00 0.00 0.00 3.53
5639 5756 4.166187 GAAGTTGCTCCAATCAAGTTCC 57.834 45.455 10.55 0.00 43.14 3.62
5640 5757 3.823304 AGGAAGTTGCTCCAATCAAGTTC 59.177 43.478 12.40 12.40 45.85 3.01
5641 5758 3.571401 CAGGAAGTTGCTCCAATCAAGTT 59.429 43.478 0.00 0.00 39.13 2.66
5642 5759 3.152341 CAGGAAGTTGCTCCAATCAAGT 58.848 45.455 0.00 0.00 38.02 3.16
5643 5760 2.490903 CCAGGAAGTTGCTCCAATCAAG 59.509 50.000 0.00 0.00 38.02 3.02
5644 5761 2.158475 ACCAGGAAGTTGCTCCAATCAA 60.158 45.455 0.00 0.00 38.02 2.57
5645 5762 1.425066 ACCAGGAAGTTGCTCCAATCA 59.575 47.619 0.00 0.00 38.02 2.57
5646 5763 2.087646 GACCAGGAAGTTGCTCCAATC 58.912 52.381 0.00 0.00 38.02 2.67
5647 5764 1.611673 CGACCAGGAAGTTGCTCCAAT 60.612 52.381 0.00 0.00 38.02 3.16
5648 5765 0.250295 CGACCAGGAAGTTGCTCCAA 60.250 55.000 0.00 0.00 38.02 3.53
5664 5781 7.057149 ACACTACAATATTTACAAGCACGAC 57.943 36.000 0.00 0.00 0.00 4.34
5730 5848 3.139077 GGTAAGATAAGCGGAACATGGG 58.861 50.000 0.00 0.00 0.00 4.00
5826 5944 7.446013 AGAACAGAGGGAGTACTATATTTCTCG 59.554 40.741 0.00 0.00 0.00 4.04
5870 5992 9.594478 CCCAAAACAGTTTAATTTTAGTTGTCT 57.406 29.630 0.00 0.00 0.00 3.41
5872 5994 9.157104 CACCCAAAACAGTTTAATTTTAGTTGT 57.843 29.630 0.00 0.00 0.00 3.32
5873 5995 9.157104 ACACCCAAAACAGTTTAATTTTAGTTG 57.843 29.630 0.00 0.00 0.00 3.16
5874 5996 9.727859 AACACCCAAAACAGTTTAATTTTAGTT 57.272 25.926 0.00 0.00 0.00 2.24
5884 6006 9.541143 CATTTAAGATAACACCCAAAACAGTTT 57.459 29.630 0.00 0.00 0.00 2.66
5885 6007 8.700973 ACATTTAAGATAACACCCAAAACAGTT 58.299 29.630 0.00 0.00 0.00 3.16
5886 6008 8.245195 ACATTTAAGATAACACCCAAAACAGT 57.755 30.769 0.00 0.00 0.00 3.55
5887 6009 8.576442 AGACATTTAAGATAACACCCAAAACAG 58.424 33.333 0.00 0.00 0.00 3.16
5888 6010 8.472007 AGACATTTAAGATAACACCCAAAACA 57.528 30.769 0.00 0.00 0.00 2.83
5892 6014 8.723311 CGTTTAGACATTTAAGATAACACCCAA 58.277 33.333 0.00 0.00 0.00 4.12
5893 6015 7.334921 CCGTTTAGACATTTAAGATAACACCCA 59.665 37.037 0.00 0.00 0.00 4.51
5894 6016 7.335171 ACCGTTTAGACATTTAAGATAACACCC 59.665 37.037 0.00 0.00 0.00 4.61
5895 6017 8.260270 ACCGTTTAGACATTTAAGATAACACC 57.740 34.615 0.00 0.00 0.00 4.16
5896 6018 9.148104 AGACCGTTTAGACATTTAAGATAACAC 57.852 33.333 0.00 0.00 0.00 3.32
5897 6019 9.715121 AAGACCGTTTAGACATTTAAGATAACA 57.285 29.630 0.00 0.00 0.00 2.41
5901 6023 9.715121 TTGTAAGACCGTTTAGACATTTAAGAT 57.285 29.630 0.00 0.00 0.00 2.40
5902 6024 9.545105 TTTGTAAGACCGTTTAGACATTTAAGA 57.455 29.630 0.00 0.00 0.00 2.10
5927 6049 9.887862 AATGATATACTCCCTCCATTCATTTTT 57.112 29.630 0.00 0.00 30.60 1.94
5928 6050 9.887862 AAATGATATACTCCCTCCATTCATTTT 57.112 29.630 0.00 0.00 38.64 1.82
5929 6051 9.305555 CAAATGATATACTCCCTCCATTCATTT 57.694 33.333 0.00 0.00 40.99 2.32
5930 6052 8.672329 TCAAATGATATACTCCCTCCATTCATT 58.328 33.333 0.00 0.00 34.88 2.57
5931 6053 8.223378 TCAAATGATATACTCCCTCCATTCAT 57.777 34.615 0.00 0.00 0.00 2.57
5932 6054 7.631510 TCAAATGATATACTCCCTCCATTCA 57.368 36.000 0.00 0.00 0.00 2.57
5933 6055 9.525826 AAATCAAATGATATACTCCCTCCATTC 57.474 33.333 0.00 0.00 33.73 2.67
5935 6057 9.965902 GTAAATCAAATGATATACTCCCTCCAT 57.034 33.333 0.00 0.00 33.73 3.41
5936 6058 9.170890 AGTAAATCAAATGATATACTCCCTCCA 57.829 33.333 0.00 0.00 33.73 3.86
5974 6096 1.630878 TCCTCCTTCCTTTCCTCAAGC 59.369 52.381 0.00 0.00 0.00 4.01
5978 6100 3.777522 TCATCTTCCTCCTTCCTTTCCTC 59.222 47.826 0.00 0.00 0.00 3.71
5979 6101 3.521531 GTCATCTTCCTCCTTCCTTTCCT 59.478 47.826 0.00 0.00 0.00 3.36
5980 6102 3.264450 TGTCATCTTCCTCCTTCCTTTCC 59.736 47.826 0.00 0.00 0.00 3.13
5981 6103 4.559862 TGTCATCTTCCTCCTTCCTTTC 57.440 45.455 0.00 0.00 0.00 2.62
5982 6104 4.787534 AGATGTCATCTTCCTCCTTCCTTT 59.212 41.667 9.68 0.00 35.76 3.11
5983 6105 4.369872 AGATGTCATCTTCCTCCTTCCTT 58.630 43.478 9.68 0.00 35.76 3.36
5984 6106 4.006247 AGATGTCATCTTCCTCCTTCCT 57.994 45.455 9.68 0.00 35.76 3.36
5985 6107 5.144100 TCTAGATGTCATCTTCCTCCTTCC 58.856 45.833 20.27 0.00 40.76 3.46
5987 6109 7.502060 TTTTCTAGATGTCATCTTCCTCCTT 57.498 36.000 20.27 0.00 40.76 3.36
6026 6189 0.695347 CCTTTCCTTCCTGTGAGGCT 59.305 55.000 0.00 0.00 34.61 4.58
6038 6210 0.252742 ACGTCATCTCCCCCTTTCCT 60.253 55.000 0.00 0.00 0.00 3.36
6043 6215 3.148279 GCGACGTCATCTCCCCCT 61.148 66.667 17.16 0.00 0.00 4.79
6045 6217 2.552585 TTTCGCGACGTCATCTCCCC 62.553 60.000 17.16 0.00 0.00 4.81
6091 6263 2.513897 AATCTTAGGCGGTGGCGC 60.514 61.111 0.00 0.00 41.24 6.53
6092 6264 2.823829 GCAATCTTAGGCGGTGGCG 61.824 63.158 0.00 0.00 41.24 5.69
6093 6265 2.481471 GGCAATCTTAGGCGGTGGC 61.481 63.158 0.00 0.00 38.90 5.01
6095 6267 1.133025 CAAAGGCAATCTTAGGCGGTG 59.867 52.381 0.00 0.00 34.78 4.94
6096 6268 1.463674 CAAAGGCAATCTTAGGCGGT 58.536 50.000 0.00 0.00 34.78 5.68
6173 6348 1.185618 TACAAGCACTGGAGCGAGGT 61.186 55.000 0.00 0.00 40.15 3.85
6177 6352 1.725641 TGAATACAAGCACTGGAGCG 58.274 50.000 0.00 0.00 40.15 5.03
6181 6356 2.283298 AGCGATGAATACAAGCACTGG 58.717 47.619 0.00 0.00 36.63 4.00
6300 6475 0.535102 AAACAAGGGTGCTGGAGACG 60.535 55.000 0.00 0.00 0.00 4.18
6303 6478 1.067516 CACAAAACAAGGGTGCTGGAG 59.932 52.381 0.00 0.00 0.00 3.86
6306 6481 1.204467 ACACACAAAACAAGGGTGCTG 59.796 47.619 0.00 0.00 36.00 4.41
6354 6529 3.992260 ACTCTATTCTTCCGATGGTCG 57.008 47.619 0.00 0.00 40.07 4.79
6370 6545 9.959721 TTTCTATAAAGATTACCAAGCAACTCT 57.040 29.630 0.00 0.00 0.00 3.24
6387 6562 9.095065 GCGGAAGAGAAACACTATTTCTATAAA 57.905 33.333 2.01 0.00 38.73 1.40
6388 6563 7.709613 GGCGGAAGAGAAACACTATTTCTATAA 59.290 37.037 2.01 0.00 38.73 0.98
6389 6564 7.208080 GGCGGAAGAGAAACACTATTTCTATA 58.792 38.462 2.01 0.00 38.73 1.31
6390 6565 6.049790 GGCGGAAGAGAAACACTATTTCTAT 58.950 40.000 2.01 0.00 38.73 1.98
6391 6566 5.416947 GGCGGAAGAGAAACACTATTTCTA 58.583 41.667 2.01 0.00 38.73 2.10
6392 6567 4.254492 GGCGGAAGAGAAACACTATTTCT 58.746 43.478 1.61 1.61 41.08 2.52
6393 6568 3.062234 CGGCGGAAGAGAAACACTATTTC 59.938 47.826 0.00 0.00 29.65 2.17
6394 6569 3.000727 CGGCGGAAGAGAAACACTATTT 58.999 45.455 0.00 0.00 29.65 1.40
6395 6570 2.232941 TCGGCGGAAGAGAAACACTATT 59.767 45.455 7.21 0.00 32.37 1.73
6396 6571 1.822990 TCGGCGGAAGAGAAACACTAT 59.177 47.619 7.21 0.00 0.00 2.12
6397 6572 1.201647 CTCGGCGGAAGAGAAACACTA 59.798 52.381 7.21 0.00 37.93 2.74
6398 6573 0.038159 CTCGGCGGAAGAGAAACACT 60.038 55.000 7.21 0.00 37.93 3.55
6399 6574 1.627550 GCTCGGCGGAAGAGAAACAC 61.628 60.000 7.21 0.00 37.93 3.32
6400 6575 1.374252 GCTCGGCGGAAGAGAAACA 60.374 57.895 7.21 0.00 37.93 2.83
6401 6576 1.355066 CTGCTCGGCGGAAGAGAAAC 61.355 60.000 7.21 0.00 37.02 2.78
6402 6577 1.079819 CTGCTCGGCGGAAGAGAAA 60.080 57.895 7.21 0.00 37.02 2.52
6403 6578 1.938657 CTCTGCTCGGCGGAAGAGAA 61.939 60.000 21.78 1.10 43.76 2.87
6404 6579 2.361230 TCTGCTCGGCGGAAGAGA 60.361 61.111 7.21 0.61 41.31 3.10
6405 6580 2.103934 CTCTGCTCGGCGGAAGAG 59.896 66.667 15.81 15.81 43.76 2.85
6406 6581 4.135153 GCTCTGCTCGGCGGAAGA 62.135 66.667 7.21 6.47 43.76 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.