Multiple sequence alignment - TraesCS7B01G085000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G085000 chr7B 100.000 3606 0 0 1 3606 97181124 97184729 0.000000e+00 6660.0
1 TraesCS7B01G085000 chr7B 99.265 136 1 0 3471 3606 428831594 428831729 2.780000e-61 246.0
2 TraesCS7B01G085000 chr7B 99.265 136 1 0 3471 3606 667821883 667821748 2.780000e-61 246.0
3 TraesCS7B01G085000 chr7B 85.714 203 24 2 1 198 558646809 558646607 3.650000e-50 209.0
4 TraesCS7B01G085000 chr7B 85.222 203 24 3 1 198 654008809 654009010 1.700000e-48 204.0
5 TraesCS7B01G085000 chr7D 91.098 2314 110 42 618 2891 135348247 135350504 0.000000e+00 3044.0
6 TraesCS7B01G085000 chr7D 75.340 1322 202 72 999 2213 30845065 30843761 4.130000e-144 521.0
7 TraesCS7B01G085000 chr7D 89.779 362 23 7 2969 3329 135350518 135350866 5.490000e-123 451.0
8 TraesCS7B01G085000 chr7D 88.571 315 22 5 307 621 135345025 135345325 1.580000e-98 370.0
9 TraesCS7B01G085000 chr7D 85.714 203 24 3 1 198 576240291 576240493 3.650000e-50 209.0
10 TraesCS7B01G085000 chr7D 88.235 136 8 5 3342 3471 135351002 135351135 4.820000e-34 156.0
11 TraesCS7B01G085000 chr7A 91.843 1753 103 22 512 2240 134481029 134482765 0.000000e+00 2409.0
12 TraesCS7B01G085000 chr7A 88.764 534 35 13 2361 2891 134482872 134483383 6.570000e-177 630.0
13 TraesCS7B01G085000 chr7A 73.973 1583 243 100 996 2449 31107384 31105842 5.410000e-133 484.0
14 TraesCS7B01G085000 chr7A 88.740 373 17 12 2969 3340 134484943 134485291 1.990000e-117 433.0
15 TraesCS7B01G085000 chr7A 85.424 295 20 8 220 510 134480443 134480718 5.890000e-73 285.0
16 TraesCS7B01G085000 chr7A 92.308 78 4 1 2826 2903 134484837 134484912 3.810000e-20 110.0
17 TraesCS7B01G085000 chr1B 100.000 135 0 0 3472 3606 279910080 279909946 2.150000e-62 250.0
18 TraesCS7B01G085000 chr1B 96.575 146 2 2 3461 3606 448747181 448747323 4.650000e-59 239.0
19 TraesCS7B01G085000 chr1B 93.750 64 1 3 2910 2971 398193191 398193253 3.830000e-15 93.5
20 TraesCS7B01G085000 chr5B 99.265 136 1 0 3471 3606 130916477 130916342 2.780000e-61 246.0
21 TraesCS7B01G085000 chr5B 85.714 203 24 3 1 198 497599282 497599080 3.650000e-50 209.0
22 TraesCS7B01G085000 chr5B 87.500 104 12 1 997 1100 679379424 679379322 6.320000e-23 119.0
23 TraesCS7B01G085000 chr5B 100.000 52 0 0 2910 2961 295178294 295178243 2.960000e-16 97.1
24 TraesCS7B01G085000 chr5B 95.833 48 2 0 1283 1330 679559561 679559514 1.070000e-10 78.7
25 TraesCS7B01G085000 chr5A 99.265 136 1 0 3471 3606 296482514 296482379 2.780000e-61 246.0
26 TraesCS7B01G085000 chr5A 86.458 192 25 1 1 192 350450309 350450499 3.650000e-50 209.0
27 TraesCS7B01G085000 chr5A 100.000 51 0 0 2910 2960 652039054 652039104 1.070000e-15 95.3
28 TraesCS7B01G085000 chr2B 99.265 136 1 0 3471 3606 457353051 457352916 2.780000e-61 246.0
29 TraesCS7B01G085000 chr4B 98.551 138 2 0 3469 3606 73279724 73279861 1.000000e-60 244.0
30 TraesCS7B01G085000 chr4B 99.259 135 1 0 3472 3606 449365515 449365381 1.000000e-60 244.0
31 TraesCS7B01G085000 chr3B 79.155 355 58 13 2544 2887 829055544 829055893 7.790000e-57 231.0
32 TraesCS7B01G085000 chr3B 87.261 157 18 2 985 1139 829054296 829054452 1.030000e-40 178.0
33 TraesCS7B01G085000 chr3B 100.000 52 0 0 2910 2961 436284268 436284319 2.960000e-16 97.1
34 TraesCS7B01G085000 chr3A 79.083 349 55 13 2551 2887 746203473 746203131 1.300000e-54 224.0
35 TraesCS7B01G085000 chr3A 89.630 135 14 0 1001 1135 746204914 746204780 4.790000e-39 172.0
36 TraesCS7B01G085000 chr6D 86.207 203 22 4 1 198 452436864 452436663 7.840000e-52 215.0
37 TraesCS7B01G085000 chr6D 85.714 203 24 3 1 198 403068640 403068842 3.650000e-50 209.0
38 TraesCS7B01G085000 chr6D 100.000 52 0 0 2910 2961 94665012 94665063 2.960000e-16 97.1
39 TraesCS7B01G085000 chr3D 86.294 197 22 3 1 192 58049129 58049325 3.650000e-50 209.0
40 TraesCS7B01G085000 chr3D 85.714 203 21 4 1 198 336806231 336806430 1.310000e-49 207.0
41 TraesCS7B01G085000 chr3D 77.534 365 62 14 2552 2901 611305727 611306086 6.100000e-48 202.0
42 TraesCS7B01G085000 chr3D 84.810 158 22 2 984 1140 611304204 611304360 1.340000e-34 158.0
43 TraesCS7B01G085000 chr4A 89.796 98 10 0 1017 1114 631494263 631494360 3.780000e-25 126.0
44 TraesCS7B01G085000 chr2A 100.000 52 0 0 2910 2961 592694643 592694592 2.960000e-16 97.1
45 TraesCS7B01G085000 chr4D 98.077 52 1 0 2910 2961 682047 681996 1.380000e-14 91.6
46 TraesCS7B01G085000 chr4D 98.077 52 1 0 2910 2961 362603617 362603668 1.380000e-14 91.6
47 TraesCS7B01G085000 chr4D 98.077 52 1 0 2910 2961 412751873 412751924 1.380000e-14 91.6
48 TraesCS7B01G085000 chr5D 95.833 48 2 0 1283 1330 538441974 538441927 1.070000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G085000 chr7B 97181124 97184729 3605 False 6660.00 6660 100.00000 1 3606 1 chr7B.!!$F1 3605
1 TraesCS7B01G085000 chr7D 135345025 135351135 6110 False 1005.25 3044 89.42075 307 3471 4 chr7D.!!$F2 3164
2 TraesCS7B01G085000 chr7D 30843761 30845065 1304 True 521.00 521 75.34000 999 2213 1 chr7D.!!$R1 1214
3 TraesCS7B01G085000 chr7A 134480443 134485291 4848 False 773.40 2409 89.41580 220 3340 5 chr7A.!!$F1 3120
4 TraesCS7B01G085000 chr7A 31105842 31107384 1542 True 484.00 484 73.97300 996 2449 1 chr7A.!!$R1 1453
5 TraesCS7B01G085000 chr3B 829054296 829055893 1597 False 204.50 231 83.20800 985 2887 2 chr3B.!!$F2 1902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.028902 TGTACGCGGACTCGATCATG 59.971 55.0 24.23 0.0 39.00 3.07 F
863 4119 0.179097 CTTGCTAGAACCCTCCGCTC 60.179 60.0 0.00 0.0 0.00 5.03 F
1194 4467 0.232303 CTTCTCGTGTGTCCGTTTGC 59.768 55.0 0.00 0.0 0.00 3.68 F
1477 4920 0.325296 AGGAGGTAATGTCTCGCCCA 60.325 55.0 0.00 0.0 32.34 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1204 4498 0.531090 CGACACCGACCAAGAACCAA 60.531 55.000 0.0 0.0 38.22 3.67 R
2457 6071 1.009829 GCAGGATACAAGGAAGCACG 58.990 55.000 0.0 0.0 41.41 5.34 R
2458 6072 1.065126 AGGCAGGATACAAGGAAGCAC 60.065 52.381 0.0 0.0 41.41 4.40 R
3429 8700 0.688087 GGGGAACACACCAAAACCCA 60.688 55.000 0.0 0.0 39.10 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.920569 AATTAATGAGTCGCTAACGGAAAT 57.079 33.333 0.00 0.00 40.63 2.17
24 25 5.712217 TTAATGAGTCGCTAACGGAAATG 57.288 39.130 0.00 0.00 40.63 2.32
25 26 1.355971 TGAGTCGCTAACGGAAATGC 58.644 50.000 0.00 0.00 40.63 3.56
26 27 1.337354 TGAGTCGCTAACGGAAATGCA 60.337 47.619 0.00 0.00 40.63 3.96
27 28 1.730064 GAGTCGCTAACGGAAATGCAA 59.270 47.619 0.00 0.00 40.63 4.08
28 29 1.463444 AGTCGCTAACGGAAATGCAAC 59.537 47.619 0.00 0.00 40.63 4.17
29 30 1.463444 GTCGCTAACGGAAATGCAACT 59.537 47.619 0.00 0.00 40.63 3.16
30 31 2.669434 GTCGCTAACGGAAATGCAACTA 59.331 45.455 0.00 0.00 40.63 2.24
31 32 3.308866 GTCGCTAACGGAAATGCAACTAT 59.691 43.478 0.00 0.00 40.63 2.12
32 33 3.554324 TCGCTAACGGAAATGCAACTATC 59.446 43.478 0.00 0.00 40.63 2.08
33 34 3.303132 CGCTAACGGAAATGCAACTATCC 60.303 47.826 0.00 0.00 34.97 2.59
39 40 2.540101 GGAAATGCAACTATCCGAGACG 59.460 50.000 0.00 0.00 0.00 4.18
40 41 2.961526 AATGCAACTATCCGAGACGT 57.038 45.000 0.00 0.00 0.00 4.34
41 42 2.961526 ATGCAACTATCCGAGACGTT 57.038 45.000 0.00 0.00 0.00 3.99
42 43 1.990799 TGCAACTATCCGAGACGTTG 58.009 50.000 0.00 0.00 39.64 4.10
43 44 1.278238 GCAACTATCCGAGACGTTGG 58.722 55.000 14.08 0.00 37.72 3.77
44 45 1.135199 GCAACTATCCGAGACGTTGGA 60.135 52.381 7.46 7.46 40.90 3.53
45 46 2.527100 CAACTATCCGAGACGTTGGAC 58.473 52.381 7.21 0.00 39.28 4.02
46 47 1.101331 ACTATCCGAGACGTTGGACC 58.899 55.000 7.21 0.00 39.28 4.46
47 48 0.029035 CTATCCGAGACGTTGGACCG 59.971 60.000 7.21 0.00 39.28 4.79
48 49 0.677731 TATCCGAGACGTTGGACCGT 60.678 55.000 7.21 0.00 45.18 4.83
49 50 2.209064 ATCCGAGACGTTGGACCGTG 62.209 60.000 7.21 0.00 41.98 4.94
50 51 2.430244 CGAGACGTTGGACCGTGG 60.430 66.667 0.00 0.00 41.98 4.94
51 52 2.048503 GAGACGTTGGACCGTGGG 60.049 66.667 0.00 0.00 41.98 4.61
52 53 4.309950 AGACGTTGGACCGTGGGC 62.310 66.667 0.00 0.00 41.98 5.36
53 54 4.309950 GACGTTGGACCGTGGGCT 62.310 66.667 0.00 0.00 41.98 5.19
54 55 4.619227 ACGTTGGACCGTGGGCTG 62.619 66.667 0.00 0.00 40.08 4.85
55 56 4.619227 CGTTGGACCGTGGGCTGT 62.619 66.667 0.00 0.00 0.00 4.40
56 57 2.745037 GTTGGACCGTGGGCTGTA 59.255 61.111 0.00 0.00 0.00 2.74
57 58 1.670083 GTTGGACCGTGGGCTGTAC 60.670 63.158 0.00 0.00 0.00 2.90
58 59 3.229156 TTGGACCGTGGGCTGTACG 62.229 63.158 0.00 0.00 40.98 3.67
64 65 4.065281 GTGGGCTGTACGCGGACT 62.065 66.667 24.23 0.00 40.44 3.85
65 66 3.755628 TGGGCTGTACGCGGACTC 61.756 66.667 24.23 14.13 40.44 3.36
66 67 4.849329 GGGCTGTACGCGGACTCG 62.849 72.222 24.23 14.71 40.44 4.18
67 68 3.807538 GGCTGTACGCGGACTCGA 61.808 66.667 24.23 0.51 40.44 4.04
68 69 2.408022 GCTGTACGCGGACTCGAT 59.592 61.111 24.23 0.00 39.00 3.59
69 70 1.654743 GCTGTACGCGGACTCGATC 60.655 63.158 24.23 3.19 39.00 3.69
70 71 1.719709 CTGTACGCGGACTCGATCA 59.280 57.895 24.23 0.00 39.00 2.92
71 72 0.308068 CTGTACGCGGACTCGATCAT 59.692 55.000 24.23 0.00 39.00 2.45
72 73 0.028902 TGTACGCGGACTCGATCATG 59.971 55.000 24.23 0.00 39.00 3.07
73 74 0.660595 GTACGCGGACTCGATCATGG 60.661 60.000 15.95 0.00 39.00 3.66
74 75 1.792118 TACGCGGACTCGATCATGGG 61.792 60.000 12.47 0.00 39.00 4.00
75 76 2.663188 GCGGACTCGATCATGGGC 60.663 66.667 0.00 0.00 39.00 5.36
76 77 2.029666 CGGACTCGATCATGGGCC 59.970 66.667 0.00 0.00 39.00 5.80
77 78 2.502492 CGGACTCGATCATGGGCCT 61.502 63.158 4.53 0.00 39.00 5.19
78 79 1.179174 CGGACTCGATCATGGGCCTA 61.179 60.000 4.53 0.00 39.00 3.93
79 80 1.048601 GGACTCGATCATGGGCCTAA 58.951 55.000 4.53 0.00 0.00 2.69
80 81 1.001406 GGACTCGATCATGGGCCTAAG 59.999 57.143 4.53 0.00 0.00 2.18
81 82 0.394565 ACTCGATCATGGGCCTAAGC 59.605 55.000 4.53 0.00 38.76 3.09
92 93 2.517919 CCTAAGCCCAGGCCCATC 59.482 66.667 4.70 0.00 43.17 3.51
93 94 2.081161 CCTAAGCCCAGGCCCATCT 61.081 63.158 4.70 0.00 43.17 2.90
94 95 0.768221 CCTAAGCCCAGGCCCATCTA 60.768 60.000 4.70 0.00 43.17 1.98
95 96 0.398318 CTAAGCCCAGGCCCATCTAC 59.602 60.000 4.70 0.00 43.17 2.59
96 97 1.060163 TAAGCCCAGGCCCATCTACC 61.060 60.000 4.70 0.00 43.17 3.18
97 98 3.890926 GCCCAGGCCCATCTACCC 61.891 72.222 0.00 0.00 34.56 3.69
98 99 3.560251 CCCAGGCCCATCTACCCG 61.560 72.222 0.00 0.00 0.00 5.28
99 100 2.445845 CCAGGCCCATCTACCCGA 60.446 66.667 0.00 0.00 0.00 5.14
100 101 2.808206 CCAGGCCCATCTACCCGAC 61.808 68.421 0.00 0.00 0.00 4.79
101 102 2.838225 AGGCCCATCTACCCGACG 60.838 66.667 0.00 0.00 0.00 5.12
102 103 3.925090 GGCCCATCTACCCGACGG 61.925 72.222 6.99 6.99 0.00 4.79
103 104 4.603946 GCCCATCTACCCGACGGC 62.604 72.222 8.86 0.00 34.36 5.68
104 105 3.925090 CCCATCTACCCGACGGCC 61.925 72.222 8.86 0.00 0.00 6.13
105 106 2.838225 CCATCTACCCGACGGCCT 60.838 66.667 8.86 0.00 0.00 5.19
106 107 1.529948 CCATCTACCCGACGGCCTA 60.530 63.158 8.86 0.00 0.00 3.93
107 108 0.898789 CCATCTACCCGACGGCCTAT 60.899 60.000 8.86 0.00 0.00 2.57
108 109 1.615116 CCATCTACCCGACGGCCTATA 60.615 57.143 8.86 0.00 0.00 1.31
109 110 2.376109 CATCTACCCGACGGCCTATAT 58.624 52.381 8.86 0.00 0.00 0.86
110 111 3.548770 CATCTACCCGACGGCCTATATA 58.451 50.000 8.86 0.00 0.00 0.86
111 112 3.719268 TCTACCCGACGGCCTATATAA 57.281 47.619 8.86 0.00 0.00 0.98
112 113 3.614092 TCTACCCGACGGCCTATATAAG 58.386 50.000 8.86 0.00 0.00 1.73
133 134 2.821366 GCGATGGCCTGTGGAGTG 60.821 66.667 3.32 0.00 0.00 3.51
134 135 2.981302 CGATGGCCTGTGGAGTGA 59.019 61.111 3.32 0.00 0.00 3.41
135 136 1.296392 CGATGGCCTGTGGAGTGAA 59.704 57.895 3.32 0.00 0.00 3.18
136 137 1.021390 CGATGGCCTGTGGAGTGAAC 61.021 60.000 3.32 0.00 0.00 3.18
137 138 0.678048 GATGGCCTGTGGAGTGAACC 60.678 60.000 3.32 0.00 0.00 3.62
138 139 2.034221 GGCCTGTGGAGTGAACCC 59.966 66.667 0.00 0.00 0.00 4.11
139 140 2.529744 GGCCTGTGGAGTGAACCCT 61.530 63.158 0.00 0.00 0.00 4.34
140 141 1.198759 GGCCTGTGGAGTGAACCCTA 61.199 60.000 0.00 0.00 0.00 3.53
141 142 0.690762 GCCTGTGGAGTGAACCCTAA 59.309 55.000 0.00 0.00 0.00 2.69
142 143 1.610886 GCCTGTGGAGTGAACCCTAAC 60.611 57.143 0.00 0.00 0.00 2.34
143 144 1.978580 CCTGTGGAGTGAACCCTAACT 59.021 52.381 0.00 0.00 0.00 2.24
144 145 2.028020 CCTGTGGAGTGAACCCTAACTC 60.028 54.545 0.00 0.00 41.75 3.01
145 146 1.616865 TGTGGAGTGAACCCTAACTCG 59.383 52.381 0.00 0.00 43.11 4.18
146 147 0.606604 TGGAGTGAACCCTAACTCGC 59.393 55.000 0.00 0.00 43.11 5.03
147 148 0.896226 GGAGTGAACCCTAACTCGCT 59.104 55.000 0.00 0.00 43.11 4.93
148 149 1.135053 GGAGTGAACCCTAACTCGCTC 60.135 57.143 4.44 4.44 44.77 5.03
149 150 1.544691 GAGTGAACCCTAACTCGCTCA 59.455 52.381 7.56 0.00 44.83 4.26
150 151 1.272769 AGTGAACCCTAACTCGCTCAC 59.727 52.381 0.00 0.00 34.69 3.51
151 152 1.272769 GTGAACCCTAACTCGCTCACT 59.727 52.381 0.00 0.00 32.36 3.41
152 153 1.544691 TGAACCCTAACTCGCTCACTC 59.455 52.381 0.00 0.00 0.00 3.51
153 154 0.896226 AACCCTAACTCGCTCACTCC 59.104 55.000 0.00 0.00 0.00 3.85
154 155 0.971447 ACCCTAACTCGCTCACTCCC 60.971 60.000 0.00 0.00 0.00 4.30
155 156 0.684805 CCCTAACTCGCTCACTCCCT 60.685 60.000 0.00 0.00 0.00 4.20
156 157 0.741915 CCTAACTCGCTCACTCCCTC 59.258 60.000 0.00 0.00 0.00 4.30
157 158 1.464734 CTAACTCGCTCACTCCCTCA 58.535 55.000 0.00 0.00 0.00 3.86
158 159 2.028130 CTAACTCGCTCACTCCCTCAT 58.972 52.381 0.00 0.00 0.00 2.90
159 160 0.534412 AACTCGCTCACTCCCTCATG 59.466 55.000 0.00 0.00 0.00 3.07
160 161 1.227205 CTCGCTCACTCCCTCATGC 60.227 63.158 0.00 0.00 0.00 4.06
161 162 1.953231 CTCGCTCACTCCCTCATGCA 61.953 60.000 0.00 0.00 0.00 3.96
162 163 1.812922 CGCTCACTCCCTCATGCAC 60.813 63.158 0.00 0.00 0.00 4.57
163 164 1.297689 GCTCACTCCCTCATGCACA 59.702 57.895 0.00 0.00 0.00 4.57
164 165 0.321919 GCTCACTCCCTCATGCACAA 60.322 55.000 0.00 0.00 0.00 3.33
165 166 1.446907 CTCACTCCCTCATGCACAAC 58.553 55.000 0.00 0.00 0.00 3.32
166 167 0.764271 TCACTCCCTCATGCACAACA 59.236 50.000 0.00 0.00 0.00 3.33
167 168 0.877071 CACTCCCTCATGCACAACAC 59.123 55.000 0.00 0.00 0.00 3.32
168 169 0.767375 ACTCCCTCATGCACAACACT 59.233 50.000 0.00 0.00 0.00 3.55
169 170 1.977854 ACTCCCTCATGCACAACACTA 59.022 47.619 0.00 0.00 0.00 2.74
170 171 2.027745 ACTCCCTCATGCACAACACTAG 60.028 50.000 0.00 0.00 0.00 2.57
171 172 1.089920 CCCTCATGCACAACACTAGC 58.910 55.000 0.00 0.00 0.00 3.42
172 173 1.339438 CCCTCATGCACAACACTAGCT 60.339 52.381 0.00 0.00 0.00 3.32
173 174 1.736126 CCTCATGCACAACACTAGCTG 59.264 52.381 0.00 0.00 0.00 4.24
174 175 2.420642 CTCATGCACAACACTAGCTGT 58.579 47.619 0.00 0.00 32.89 4.40
175 176 2.810274 CTCATGCACAACACTAGCTGTT 59.190 45.455 0.00 5.26 44.51 3.16
176 177 3.996363 CTCATGCACAACACTAGCTGTTA 59.004 43.478 0.00 0.00 41.50 2.41
177 178 4.578871 TCATGCACAACACTAGCTGTTAT 58.421 39.130 0.00 0.00 41.50 1.89
178 179 4.631377 TCATGCACAACACTAGCTGTTATC 59.369 41.667 0.00 4.58 41.50 1.75
179 180 4.271696 TGCACAACACTAGCTGTTATCT 57.728 40.909 0.00 0.00 41.50 1.98
180 181 5.400066 TGCACAACACTAGCTGTTATCTA 57.600 39.130 0.00 0.00 41.50 1.98
181 182 5.168569 TGCACAACACTAGCTGTTATCTAC 58.831 41.667 0.00 0.00 41.50 2.59
182 183 5.047306 TGCACAACACTAGCTGTTATCTACT 60.047 40.000 0.00 0.00 41.50 2.57
183 184 5.289675 GCACAACACTAGCTGTTATCTACTG 59.710 44.000 0.00 1.88 41.50 2.74
184 185 6.390721 CACAACACTAGCTGTTATCTACTGT 58.609 40.000 0.00 0.00 41.50 3.55
185 186 6.868864 CACAACACTAGCTGTTATCTACTGTT 59.131 38.462 0.00 0.00 41.50 3.16
186 187 7.385205 CACAACACTAGCTGTTATCTACTGTTT 59.615 37.037 0.00 0.00 41.50 2.83
187 188 7.599245 ACAACACTAGCTGTTATCTACTGTTTC 59.401 37.037 0.00 0.00 41.50 2.78
188 189 7.469537 ACACTAGCTGTTATCTACTGTTTCT 57.530 36.000 0.00 0.00 0.00 2.52
189 190 7.540299 ACACTAGCTGTTATCTACTGTTTCTC 58.460 38.462 0.00 0.00 0.00 2.87
190 191 7.394923 ACACTAGCTGTTATCTACTGTTTCTCT 59.605 37.037 0.00 0.00 0.00 3.10
191 192 7.913297 CACTAGCTGTTATCTACTGTTTCTCTC 59.087 40.741 0.00 0.00 0.00 3.20
192 193 7.832187 ACTAGCTGTTATCTACTGTTTCTCTCT 59.168 37.037 0.00 0.00 0.00 3.10
193 194 7.475137 AGCTGTTATCTACTGTTTCTCTCTT 57.525 36.000 0.00 0.00 0.00 2.85
194 195 7.902087 AGCTGTTATCTACTGTTTCTCTCTTT 58.098 34.615 0.00 0.00 0.00 2.52
195 196 7.816995 AGCTGTTATCTACTGTTTCTCTCTTTG 59.183 37.037 0.00 0.00 0.00 2.77
196 197 7.600752 GCTGTTATCTACTGTTTCTCTCTTTGT 59.399 37.037 0.00 0.00 0.00 2.83
197 198 8.818141 TGTTATCTACTGTTTCTCTCTTTGTG 57.182 34.615 0.00 0.00 0.00 3.33
198 199 8.421784 TGTTATCTACTGTTTCTCTCTTTGTGT 58.578 33.333 0.00 0.00 0.00 3.72
199 200 8.917655 GTTATCTACTGTTTCTCTCTTTGTGTC 58.082 37.037 0.00 0.00 0.00 3.67
200 201 6.716934 TCTACTGTTTCTCTCTTTGTGTCT 57.283 37.500 0.00 0.00 0.00 3.41
201 202 7.818997 TCTACTGTTTCTCTCTTTGTGTCTA 57.181 36.000 0.00 0.00 0.00 2.59
202 203 8.234136 TCTACTGTTTCTCTCTTTGTGTCTAA 57.766 34.615 0.00 0.00 0.00 2.10
203 204 8.861086 TCTACTGTTTCTCTCTTTGTGTCTAAT 58.139 33.333 0.00 0.00 0.00 1.73
205 206 8.819643 ACTGTTTCTCTCTTTGTGTCTAATAC 57.180 34.615 0.00 0.00 0.00 1.89
206 207 8.643324 ACTGTTTCTCTCTTTGTGTCTAATACT 58.357 33.333 0.00 0.00 0.00 2.12
207 208 9.482627 CTGTTTCTCTCTTTGTGTCTAATACTT 57.517 33.333 0.00 0.00 0.00 2.24
247 248 7.706607 TCAAGAATAGTGAACGAATGGAGTATG 59.293 37.037 0.00 0.00 0.00 2.39
272 273 8.573885 TGTTACATTAGACCATAATAGAGACCG 58.426 37.037 0.00 0.00 0.00 4.79
277 278 5.776173 AGACCATAATAGAGACCGTTCAG 57.224 43.478 0.00 0.00 0.00 3.02
278 279 5.202004 AGACCATAATAGAGACCGTTCAGT 58.798 41.667 0.00 0.00 0.00 3.41
300 301 6.762187 CAGTTCATATTCAGAAGCACTCTCAT 59.238 38.462 0.00 0.00 29.07 2.90
390 391 9.295214 CTCAAATATAGACAATCCAGCTATACG 57.705 37.037 0.00 0.00 31.90 3.06
391 392 8.251026 TCAAATATAGACAATCCAGCTATACGG 58.749 37.037 0.00 0.00 31.90 4.02
392 393 7.956328 AATATAGACAATCCAGCTATACGGA 57.044 36.000 0.00 0.00 31.90 4.69
394 395 4.323553 AGACAATCCAGCTATACGGAAC 57.676 45.455 0.00 0.00 34.22 3.62
395 396 3.069729 AGACAATCCAGCTATACGGAACC 59.930 47.826 0.00 0.00 34.22 3.62
396 397 2.769663 ACAATCCAGCTATACGGAACCA 59.230 45.455 0.00 0.00 34.22 3.67
398 399 4.591498 ACAATCCAGCTATACGGAACCATA 59.409 41.667 0.00 0.00 34.22 2.74
416 417 9.325198 GGAACCATATATTTTTCCCAACATTTC 57.675 33.333 9.66 0.00 32.75 2.17
417 418 9.883142 GAACCATATATTTTTCCCAACATTTCA 57.117 29.630 0.00 0.00 0.00 2.69
438 440 7.759489 TTCAAAAGCAGAACATATGTTACCT 57.241 32.000 20.83 11.98 38.56 3.08
443 445 5.309323 GCAGAACATATGTTACCTGCAAA 57.691 39.130 34.88 0.00 46.43 3.68
549 866 6.106673 TCCTACGAGATTTCTTTGTGGAATC 58.893 40.000 0.00 0.00 0.00 2.52
623 3875 3.963383 AAAAGCACACAAGACTTACCG 57.037 42.857 0.00 0.00 0.00 4.02
674 3926 1.674322 CCGCAGAAAATCACGGGGT 60.674 57.895 0.00 0.00 41.95 4.95
711 3967 0.312416 CTCGCGAGGGAGATTTCGAT 59.688 55.000 28.40 0.00 39.06 3.59
800 4056 1.227438 CGTCCACACCCAACGAACT 60.227 57.895 0.00 0.00 38.65 3.01
801 4057 1.495584 CGTCCACACCCAACGAACTG 61.496 60.000 0.00 0.00 38.65 3.16
863 4119 0.179097 CTTGCTAGAACCCTCCGCTC 60.179 60.000 0.00 0.00 0.00 5.03
913 4169 2.124942 GCTTTCCCCTCTCGCCTG 60.125 66.667 0.00 0.00 0.00 4.85
940 4196 2.908940 CCATCCATTCTGCCGCCC 60.909 66.667 0.00 0.00 0.00 6.13
1183 4456 0.917259 CTTCGATTCGCCTTCTCGTG 59.083 55.000 0.00 0.00 34.19 4.35
1184 4457 0.242825 TTCGATTCGCCTTCTCGTGT 59.757 50.000 0.00 0.00 34.19 4.49
1187 4460 0.992802 GATTCGCCTTCTCGTGTGTC 59.007 55.000 0.00 0.00 0.00 3.67
1194 4467 0.232303 CTTCTCGTGTGTCCGTTTGC 59.768 55.000 0.00 0.00 0.00 3.68
1199 4493 0.375454 CGTGTGTCCGTTTGCTTGAA 59.625 50.000 0.00 0.00 0.00 2.69
1203 4497 1.529438 GTGTCCGTTTGCTTGAATCGA 59.471 47.619 0.00 0.00 0.00 3.59
1204 4498 2.159627 GTGTCCGTTTGCTTGAATCGAT 59.840 45.455 0.00 0.00 0.00 3.59
1382 4789 7.584987 TCTATTTCTCTTTTTCTTTGCCTTCG 58.415 34.615 0.00 0.00 0.00 3.79
1396 4806 1.730064 GCCTTCGTTCGATTGCTAACA 59.270 47.619 0.00 0.00 0.00 2.41
1477 4920 0.325296 AGGAGGTAATGTCTCGCCCA 60.325 55.000 0.00 0.00 32.34 5.36
1516 4964 8.895845 CAGTGATAAATTCGTTGCATATTTAGC 58.104 33.333 0.00 0.25 33.20 3.09
1532 5014 9.178427 GCATATTTAGCAATCTGAATTCTTGAC 57.822 33.333 7.05 0.74 31.86 3.18
1537 5019 6.264841 AGCAATCTGAATTCTTGACTTTCC 57.735 37.500 7.05 0.00 0.00 3.13
1761 5254 0.950836 CCGTTGCATTCAGTTCACCA 59.049 50.000 0.00 0.00 0.00 4.17
2161 5730 6.535274 AATCTTGAAGCTTTCATGTTTTGC 57.465 33.333 0.00 0.00 39.84 3.68
2172 5741 2.168106 TCATGTTTTGCTGGTTTGCTGT 59.832 40.909 0.00 0.00 0.00 4.40
2189 5758 5.190992 TGCTGTTGCCATTATCATGAATC 57.809 39.130 0.00 0.00 38.71 2.52
2218 5787 9.311916 CCACAATATTTGTACACCCAATTAATG 57.688 33.333 0.00 0.00 43.23 1.90
2266 5876 8.184304 ACTGTAGACATTACTTCTTCTGTTCT 57.816 34.615 0.00 0.00 0.00 3.01
2312 5922 4.874396 TGAGTTGAGCTGCAGATCTATTTG 59.126 41.667 30.29 0.00 0.00 2.32
2428 6042 4.706476 TCCCTACAGCATTCCTTCATTTTG 59.294 41.667 0.00 0.00 0.00 2.44
2458 6072 8.314635 GCAGATCGTAGAATGCTTATAAATACG 58.685 37.037 0.00 0.00 45.79 3.06
2461 6075 7.329438 TCGTAGAATGCTTATAAATACGTGC 57.671 36.000 0.00 0.00 36.73 5.34
2464 6078 7.945178 CGTAGAATGCTTATAAATACGTGCTTC 59.055 37.037 0.00 0.00 32.21 3.86
2465 6079 7.190920 AGAATGCTTATAAATACGTGCTTCC 57.809 36.000 0.00 0.00 0.00 3.46
2466 6080 6.992715 AGAATGCTTATAAATACGTGCTTCCT 59.007 34.615 0.00 0.00 0.00 3.36
2467 6081 7.499232 AGAATGCTTATAAATACGTGCTTCCTT 59.501 33.333 0.00 0.00 0.00 3.36
2468 6082 6.358118 TGCTTATAAATACGTGCTTCCTTG 57.642 37.500 0.00 0.00 0.00 3.61
2470 6084 7.042950 TGCTTATAAATACGTGCTTCCTTGTA 58.957 34.615 0.00 0.00 0.00 2.41
2471 6085 7.713507 TGCTTATAAATACGTGCTTCCTTGTAT 59.286 33.333 0.00 0.00 0.00 2.29
2472 6086 8.221766 GCTTATAAATACGTGCTTCCTTGTATC 58.778 37.037 0.00 0.00 0.00 2.24
2488 6102 3.321039 TGTATCCTGCCTCTGATTGGAT 58.679 45.455 0.00 0.00 40.26 3.41
2489 6103 3.718434 TGTATCCTGCCTCTGATTGGATT 59.282 43.478 0.00 0.00 38.36 3.01
2549 6166 3.191162 CACTGCTAACAATGCTGCCTTTA 59.809 43.478 0.00 0.00 33.58 1.85
2643 6264 8.219769 GTGAGATACTGAAATTCGAATATGCAG 58.780 37.037 22.69 22.69 0.00 4.41
2678 6300 8.247562 GGTAAATTGTTCATATTACTGTGCCAA 58.752 33.333 0.00 0.00 0.00 4.52
2721 6343 9.665264 GAACTGAGTATTTTAAAAGTTCACCTG 57.335 33.333 17.41 8.29 41.87 4.00
2733 6355 4.373156 AGTTCACCTGTAGGCATCTTTT 57.627 40.909 0.00 0.00 39.32 2.27
2903 8046 5.163530 TGCTTACATGCAAGACATTTATGGG 60.164 40.000 9.99 0.00 40.29 4.00
2904 8047 5.737063 GCTTACATGCAAGACATTTATGGGG 60.737 44.000 9.99 0.00 36.64 4.96
2908 8051 5.536161 ACATGCAAGACATTTATGGGGTATC 59.464 40.000 0.00 0.00 36.64 2.24
2910 8053 5.376625 TGCAAGACATTTATGGGGTATCTC 58.623 41.667 0.00 0.00 0.00 2.75
2911 8054 4.762251 GCAAGACATTTATGGGGTATCTCC 59.238 45.833 0.00 0.00 0.00 3.71
2912 8055 5.690097 GCAAGACATTTATGGGGTATCTCCA 60.690 44.000 0.00 0.00 38.82 3.86
2913 8056 6.364701 CAAGACATTTATGGGGTATCTCCAA 58.635 40.000 0.00 0.00 37.87 3.53
2916 8059 7.595488 AGACATTTATGGGGTATCTCCAAAAT 58.405 34.615 0.00 0.00 37.87 1.82
2917 8060 8.732854 AGACATTTATGGGGTATCTCCAAAATA 58.267 33.333 0.00 0.00 37.87 1.40
2918 8061 8.940397 ACATTTATGGGGTATCTCCAAAATAG 57.060 34.615 0.00 0.87 37.87 1.73
2919 8062 8.732854 ACATTTATGGGGTATCTCCAAAATAGA 58.267 33.333 0.00 0.00 37.87 1.98
2921 8064 9.759473 ATTTATGGGGTATCTCCAAAATAGATG 57.241 33.333 0.00 0.00 37.87 2.90
2923 8066 6.187727 TGGGGTATCTCCAAAATAGATGAC 57.812 41.667 0.00 0.00 35.36 3.06
2924 8067 5.911178 TGGGGTATCTCCAAAATAGATGACT 59.089 40.000 0.00 0.00 35.36 3.41
2925 8068 6.043243 TGGGGTATCTCCAAAATAGATGACTC 59.957 42.308 0.00 0.00 35.36 3.36
2926 8069 6.043243 GGGGTATCTCCAAAATAGATGACTCA 59.957 42.308 0.00 0.00 35.36 3.41
2927 8070 7.420214 GGGGTATCTCCAAAATAGATGACTCAA 60.420 40.741 0.00 0.00 35.36 3.02
2928 8071 7.442666 GGGTATCTCCAAAATAGATGACTCAAC 59.557 40.741 0.00 0.00 35.36 3.18
2930 8073 9.606631 GTATCTCCAAAATAGATGACTCAACTT 57.393 33.333 0.00 0.00 35.36 2.66
2933 8076 7.939039 TCTCCAAAATAGATGACTCAACTTTGT 59.061 33.333 0.00 0.00 0.00 2.83
2934 8077 9.219603 CTCCAAAATAGATGACTCAACTTTGTA 57.780 33.333 0.00 0.00 0.00 2.41
2935 8078 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2936 8079 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
2967 8110 7.944729 ATACTAAAGTTAGTACAACGAGGGA 57.055 36.000 12.07 0.00 45.86 4.20
3045 8188 9.719355 TTATCTTAAACTCTGTTTGCTATGTCA 57.281 29.630 6.01 0.00 0.00 3.58
3096 8240 4.759183 GCTGGCCCAAATTTTGATTTTACA 59.241 37.500 10.72 1.06 0.00 2.41
3154 8298 1.000843 GATTGTTTGGGTGGTGGAAGC 59.999 52.381 0.00 0.00 0.00 3.86
3212 8356 4.169856 TGTCTTGCCCTCCCCAATAAATAT 59.830 41.667 0.00 0.00 0.00 1.28
3220 8364 5.543405 CCCTCCCCAATAAATATGCATTTGA 59.457 40.000 3.54 0.00 35.88 2.69
3235 8379 7.578310 ATGCATTTGAATTGCATACTCTACT 57.422 32.000 21.72 1.17 46.01 2.57
3236 8380 6.788243 TGCATTTGAATTGCATACTCTACTG 58.212 36.000 10.34 0.00 33.24 2.74
3243 8387 4.720649 TTGCATACTCTACTGTCCACTC 57.279 45.455 0.00 0.00 0.00 3.51
3264 8408 6.815641 CACTCTTGCATGAGTATCTGTAGTTT 59.184 38.462 28.79 5.28 44.56 2.66
3265 8409 7.009999 CACTCTTGCATGAGTATCTGTAGTTTC 59.990 40.741 28.79 0.00 44.56 2.78
3266 8410 7.093552 ACTCTTGCATGAGTATCTGTAGTTTCT 60.094 37.037 28.38 4.05 44.53 2.52
3267 8411 7.261325 TCTTGCATGAGTATCTGTAGTTTCTC 58.739 38.462 0.00 0.00 34.92 2.87
3268 8412 6.782082 TGCATGAGTATCTGTAGTTTCTCT 57.218 37.500 0.00 0.00 34.92 3.10
3270 8414 5.461737 GCATGAGTATCTGTAGTTTCTCTGC 59.538 44.000 0.00 0.00 34.92 4.26
3321 8476 0.773644 AGGCACACTCTTGGATGGTT 59.226 50.000 0.00 0.00 0.00 3.67
3340 8495 4.080807 TGGTTTCAGAAACAGTACTCACCA 60.081 41.667 24.37 10.29 43.15 4.17
3341 8496 4.272748 GGTTTCAGAAACAGTACTCACCAC 59.727 45.833 24.37 2.30 43.15 4.16
3342 8497 5.116882 GTTTCAGAAACAGTACTCACCACT 58.883 41.667 19.46 0.00 41.04 4.00
3343 8498 6.278363 GTTTCAGAAACAGTACTCACCACTA 58.722 40.000 19.46 0.00 41.04 2.74
3350 8616 6.912951 AACAGTACTCACCACTATGTAGTT 57.087 37.500 0.00 0.00 33.46 2.24
3389 8655 7.872113 AGCTTTCAAGGATATAAAGAAGTGG 57.128 36.000 0.00 0.00 33.05 4.00
3390 8656 6.830838 AGCTTTCAAGGATATAAAGAAGTGGG 59.169 38.462 0.00 0.00 33.05 4.61
3391 8657 6.460261 GCTTTCAAGGATATAAAGAAGTGGGC 60.460 42.308 0.00 0.00 33.05 5.36
3392 8658 5.975988 TCAAGGATATAAAGAAGTGGGCT 57.024 39.130 0.00 0.00 0.00 5.19
3393 8659 6.327386 TCAAGGATATAAAGAAGTGGGCTT 57.673 37.500 0.00 0.00 37.71 4.35
3402 8673 1.490490 AGAAGTGGGCTTTCAGTGTGA 59.510 47.619 0.00 0.00 34.61 3.58
3407 8678 2.030805 GTGGGCTTTCAGTGTGAATGTC 60.031 50.000 4.92 2.51 36.11 3.06
3417 8688 1.389106 GTGTGAATGTCGTACGCCTTC 59.611 52.381 11.24 13.96 0.00 3.46
3423 8694 2.228138 TGTCGTACGCCTTCTGTTTT 57.772 45.000 11.24 0.00 0.00 2.43
3424 8695 2.129607 TGTCGTACGCCTTCTGTTTTC 58.870 47.619 11.24 0.00 0.00 2.29
3425 8696 2.129607 GTCGTACGCCTTCTGTTTTCA 58.870 47.619 11.24 0.00 0.00 2.69
3428 8699 3.810941 TCGTACGCCTTCTGTTTTCATTT 59.189 39.130 11.24 0.00 0.00 2.32
3429 8700 4.273969 TCGTACGCCTTCTGTTTTCATTTT 59.726 37.500 11.24 0.00 0.00 1.82
3471 8742 0.039911 AAGACCCGCTGACTCCTACT 59.960 55.000 0.00 0.00 0.00 2.57
3472 8743 0.681564 AGACCCGCTGACTCCTACTG 60.682 60.000 0.00 0.00 0.00 2.74
3473 8744 0.966370 GACCCGCTGACTCCTACTGT 60.966 60.000 0.00 0.00 0.00 3.55
3474 8745 0.542232 ACCCGCTGACTCCTACTGTT 60.542 55.000 0.00 0.00 0.00 3.16
3475 8746 1.272313 ACCCGCTGACTCCTACTGTTA 60.272 52.381 0.00 0.00 0.00 2.41
3476 8747 1.405821 CCCGCTGACTCCTACTGTTAG 59.594 57.143 0.00 0.00 0.00 2.34
3477 8748 2.366533 CCGCTGACTCCTACTGTTAGA 58.633 52.381 0.00 0.00 0.00 2.10
3478 8749 2.356382 CCGCTGACTCCTACTGTTAGAG 59.644 54.545 5.51 5.51 0.00 2.43
3479 8750 3.011119 CGCTGACTCCTACTGTTAGAGT 58.989 50.000 10.96 10.96 38.88 3.24
3480 8751 4.190001 CGCTGACTCCTACTGTTAGAGTA 58.810 47.826 11.08 0.00 35.96 2.59
3481 8752 4.034279 CGCTGACTCCTACTGTTAGAGTAC 59.966 50.000 11.08 7.13 35.96 2.73
3482 8753 4.034279 GCTGACTCCTACTGTTAGAGTACG 59.966 50.000 11.08 7.53 35.96 3.67
3483 8754 5.157940 TGACTCCTACTGTTAGAGTACGT 57.842 43.478 11.08 0.00 35.96 3.57
3484 8755 6.286240 TGACTCCTACTGTTAGAGTACGTA 57.714 41.667 11.08 0.00 35.96 3.57
3485 8756 6.701340 TGACTCCTACTGTTAGAGTACGTAA 58.299 40.000 11.08 0.00 35.96 3.18
3486 8757 7.334090 TGACTCCTACTGTTAGAGTACGTAAT 58.666 38.462 11.08 0.00 35.96 1.89
3487 8758 7.279536 TGACTCCTACTGTTAGAGTACGTAATG 59.720 40.741 0.00 0.00 35.96 1.90
3488 8759 6.541641 ACTCCTACTGTTAGAGTACGTAATGG 59.458 42.308 0.00 0.00 35.96 3.16
3489 8760 5.824624 TCCTACTGTTAGAGTACGTAATGGG 59.175 44.000 0.00 0.00 35.96 4.00
3490 8761 4.382345 ACTGTTAGAGTACGTAATGGGC 57.618 45.455 0.00 0.00 30.86 5.36
3491 8762 3.131755 ACTGTTAGAGTACGTAATGGGCC 59.868 47.826 0.00 0.00 30.86 5.80
3492 8763 3.368248 TGTTAGAGTACGTAATGGGCCT 58.632 45.455 4.53 0.00 0.00 5.19
3493 8764 4.535781 TGTTAGAGTACGTAATGGGCCTA 58.464 43.478 4.53 0.00 0.00 3.93
3494 8765 4.955450 TGTTAGAGTACGTAATGGGCCTAA 59.045 41.667 4.53 0.00 0.00 2.69
3495 8766 5.599656 TGTTAGAGTACGTAATGGGCCTAAT 59.400 40.000 4.53 0.00 0.00 1.73
3496 8767 4.602340 AGAGTACGTAATGGGCCTAATG 57.398 45.455 4.53 0.00 0.00 1.90
3497 8768 3.323979 AGAGTACGTAATGGGCCTAATGG 59.676 47.826 4.53 0.00 0.00 3.16
3498 8769 3.311091 AGTACGTAATGGGCCTAATGGA 58.689 45.455 4.53 0.00 34.57 3.41
3499 8770 2.632987 ACGTAATGGGCCTAATGGAC 57.367 50.000 4.53 0.00 41.93 4.02
3525 8796 9.155785 CCCATTAGTCTTAGGGTTAATTAGAGA 57.844 37.037 0.00 0.00 36.52 3.10
3531 8802 9.382307 AGTCTTAGGGTTAATTAGAGATAAGGG 57.618 37.037 8.51 0.00 0.00 3.95
3532 8803 9.156940 GTCTTAGGGTTAATTAGAGATAAGGGT 57.843 37.037 8.51 0.00 0.00 4.34
3533 8804 9.377238 TCTTAGGGTTAATTAGAGATAAGGGTC 57.623 37.037 8.51 0.00 0.00 4.46
3534 8805 6.667558 AGGGTTAATTAGAGATAAGGGTCG 57.332 41.667 0.00 0.00 0.00 4.79
3535 8806 5.011840 AGGGTTAATTAGAGATAAGGGTCGC 59.988 44.000 0.00 0.00 0.00 5.19
3536 8807 5.011840 GGGTTAATTAGAGATAAGGGTCGCT 59.988 44.000 0.00 0.00 32.84 4.93
3537 8808 6.464039 GGGTTAATTAGAGATAAGGGTCGCTT 60.464 42.308 7.38 7.38 30.69 4.68
3538 8809 6.424207 GGTTAATTAGAGATAAGGGTCGCTTG 59.576 42.308 12.19 0.00 30.69 4.01
3539 8810 3.454371 TTAGAGATAAGGGTCGCTTGC 57.546 47.619 12.19 4.62 30.69 4.01
3540 8811 1.490574 AGAGATAAGGGTCGCTTGCT 58.509 50.000 12.19 9.05 0.00 3.91
3541 8812 1.834263 AGAGATAAGGGTCGCTTGCTT 59.166 47.619 12.19 0.00 0.00 3.91
3542 8813 3.031736 AGAGATAAGGGTCGCTTGCTTA 58.968 45.455 12.19 0.00 0.00 3.09
3543 8814 3.068873 AGAGATAAGGGTCGCTTGCTTAG 59.931 47.826 12.19 0.00 0.00 2.18
3544 8815 2.103263 AGATAAGGGTCGCTTGCTTAGG 59.897 50.000 12.19 0.00 0.00 2.69
3545 8816 0.539986 TAAGGGTCGCTTGCTTAGGG 59.460 55.000 12.19 0.00 38.13 3.53
3546 8817 2.124695 GGGTCGCTTGCTTAGGGG 60.125 66.667 4.21 0.00 37.41 4.79
3547 8818 2.669240 GGTCGCTTGCTTAGGGGT 59.331 61.111 4.21 0.00 37.41 4.95
3548 8819 1.449778 GGTCGCTTGCTTAGGGGTC 60.450 63.158 4.21 0.00 37.41 4.46
3549 8820 1.295423 GTCGCTTGCTTAGGGGTCA 59.705 57.895 4.21 0.00 37.41 4.02
3550 8821 0.321298 GTCGCTTGCTTAGGGGTCAA 60.321 55.000 4.21 0.00 37.41 3.18
3551 8822 0.036388 TCGCTTGCTTAGGGGTCAAG 60.036 55.000 0.00 0.00 39.95 3.02
3552 8823 0.321653 CGCTTGCTTAGGGGTCAAGT 60.322 55.000 0.00 0.00 39.36 3.16
3553 8824 1.066430 CGCTTGCTTAGGGGTCAAGTA 60.066 52.381 0.00 0.00 39.36 2.24
3554 8825 2.614481 CGCTTGCTTAGGGGTCAAGTAA 60.614 50.000 0.00 0.00 39.36 2.24
3555 8826 3.010420 GCTTGCTTAGGGGTCAAGTAAG 58.990 50.000 8.11 8.11 44.06 2.34
3556 8827 2.781681 TGCTTAGGGGTCAAGTAAGC 57.218 50.000 6.41 6.41 45.90 3.09
3557 8828 1.280998 TGCTTAGGGGTCAAGTAAGCC 59.719 52.381 10.06 0.00 45.37 4.35
3558 8829 1.560146 GCTTAGGGGTCAAGTAAGCCT 59.440 52.381 2.53 0.00 41.83 4.58
3559 8830 2.026169 GCTTAGGGGTCAAGTAAGCCTT 60.026 50.000 2.53 0.00 41.83 4.35
3571 8842 3.580084 AGCCTTGCTTGGGAGTCA 58.420 55.556 0.00 0.00 33.89 3.41
3572 8843 1.846261 AGCCTTGCTTGGGAGTCAA 59.154 52.632 0.00 0.00 33.89 3.18
3582 8853 4.625607 CTTGGGAGTCAAGTAAACCTCT 57.374 45.455 0.00 0.00 45.81 3.69
3583 8854 4.570930 CTTGGGAGTCAAGTAAACCTCTC 58.429 47.826 0.00 0.00 45.81 3.20
3584 8855 3.858135 TGGGAGTCAAGTAAACCTCTCT 58.142 45.455 0.00 0.00 0.00 3.10
3585 8856 5.006896 TGGGAGTCAAGTAAACCTCTCTA 57.993 43.478 0.00 0.00 0.00 2.43
3586 8857 5.590818 TGGGAGTCAAGTAAACCTCTCTAT 58.409 41.667 0.00 0.00 0.00 1.98
3587 8858 6.738635 TGGGAGTCAAGTAAACCTCTCTATA 58.261 40.000 0.00 0.00 0.00 1.31
3588 8859 7.363031 TGGGAGTCAAGTAAACCTCTCTATAT 58.637 38.462 0.00 0.00 0.00 0.86
3589 8860 8.508601 TGGGAGTCAAGTAAACCTCTCTATATA 58.491 37.037 0.00 0.00 0.00 0.86
3590 8861 9.364653 GGGAGTCAAGTAAACCTCTCTATATAA 57.635 37.037 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.554324 GCATTTCCGTTAGCGACTCATTA 59.446 43.478 0.00 0.00 41.33 1.90
4 5 2.351726 GCATTTCCGTTAGCGACTCATT 59.648 45.455 0.00 0.00 41.33 2.57
6 7 1.337354 TGCATTTCCGTTAGCGACTCA 60.337 47.619 0.00 0.00 41.33 3.41
7 8 1.355971 TGCATTTCCGTTAGCGACTC 58.644 50.000 0.00 0.00 41.33 3.36
8 9 1.463444 GTTGCATTTCCGTTAGCGACT 59.537 47.619 0.00 0.00 41.33 4.18
9 10 1.463444 AGTTGCATTTCCGTTAGCGAC 59.537 47.619 0.00 0.00 40.77 5.19
10 11 1.803334 AGTTGCATTTCCGTTAGCGA 58.197 45.000 0.00 0.00 41.33 4.93
11 12 3.303132 GGATAGTTGCATTTCCGTTAGCG 60.303 47.826 0.00 0.00 37.95 4.26
13 14 4.452890 CGGATAGTTGCATTTCCGTTAG 57.547 45.455 15.14 0.00 44.65 2.34
18 19 2.540101 CGTCTCGGATAGTTGCATTTCC 59.460 50.000 0.00 0.00 0.00 3.13
19 20 3.187700 ACGTCTCGGATAGTTGCATTTC 58.812 45.455 0.00 0.00 0.00 2.17
20 21 3.247006 ACGTCTCGGATAGTTGCATTT 57.753 42.857 0.00 0.00 0.00 2.32
21 22 2.930040 CAACGTCTCGGATAGTTGCATT 59.070 45.455 0.00 0.00 37.70 3.56
22 23 2.540515 CAACGTCTCGGATAGTTGCAT 58.459 47.619 0.00 0.00 37.70 3.96
23 24 1.403647 CCAACGTCTCGGATAGTTGCA 60.404 52.381 12.08 0.00 41.65 4.08
24 25 1.135199 TCCAACGTCTCGGATAGTTGC 60.135 52.381 12.08 0.00 41.65 4.17
25 26 2.527100 GTCCAACGTCTCGGATAGTTG 58.473 52.381 4.80 11.12 42.37 3.16
26 27 1.475682 GGTCCAACGTCTCGGATAGTT 59.524 52.381 4.80 0.00 32.83 2.24
27 28 1.101331 GGTCCAACGTCTCGGATAGT 58.899 55.000 4.80 0.00 32.83 2.12
28 29 0.029035 CGGTCCAACGTCTCGGATAG 59.971 60.000 4.80 0.00 32.83 2.08
29 30 0.677731 ACGGTCCAACGTCTCGGATA 60.678 55.000 4.80 0.00 45.08 2.59
30 31 1.975407 ACGGTCCAACGTCTCGGAT 60.975 57.895 4.80 0.00 45.08 4.18
31 32 2.595463 ACGGTCCAACGTCTCGGA 60.595 61.111 0.00 0.00 45.08 4.55
32 33 2.430244 CACGGTCCAACGTCTCGG 60.430 66.667 0.00 0.00 46.75 4.63
33 34 2.430244 CCACGGTCCAACGTCTCG 60.430 66.667 0.00 0.00 46.75 4.04
34 35 2.048503 CCCACGGTCCAACGTCTC 60.049 66.667 0.00 0.00 46.75 3.36
35 36 4.309950 GCCCACGGTCCAACGTCT 62.310 66.667 0.00 0.00 46.75 4.18
36 37 4.309950 AGCCCACGGTCCAACGTC 62.310 66.667 0.00 0.00 46.75 4.34
38 39 3.229156 TACAGCCCACGGTCCAACG 62.229 63.158 0.00 0.00 40.31 4.10
39 40 1.670083 GTACAGCCCACGGTCCAAC 60.670 63.158 0.00 0.00 0.00 3.77
40 41 2.745037 GTACAGCCCACGGTCCAA 59.255 61.111 0.00 0.00 0.00 3.53
41 42 3.687102 CGTACAGCCCACGGTCCA 61.687 66.667 0.00 0.00 35.78 4.02
47 48 3.984200 GAGTCCGCGTACAGCCCAC 62.984 68.421 4.17 0.00 44.76 4.61
48 49 3.755628 GAGTCCGCGTACAGCCCA 61.756 66.667 4.17 0.00 44.76 5.36
49 50 4.849329 CGAGTCCGCGTACAGCCC 62.849 72.222 4.17 0.00 44.76 5.19
50 51 2.985486 GATCGAGTCCGCGTACAGCC 62.985 65.000 4.17 0.00 44.76 4.85
51 52 1.654743 GATCGAGTCCGCGTACAGC 60.655 63.158 4.17 0.00 43.95 4.40
52 53 0.308068 ATGATCGAGTCCGCGTACAG 59.692 55.000 4.17 0.00 35.37 2.74
53 54 0.028902 CATGATCGAGTCCGCGTACA 59.971 55.000 4.17 0.00 35.37 2.90
54 55 0.660595 CCATGATCGAGTCCGCGTAC 60.661 60.000 4.92 0.00 35.37 3.67
55 56 1.652563 CCATGATCGAGTCCGCGTA 59.347 57.895 4.92 0.00 35.37 4.42
56 57 2.413351 CCATGATCGAGTCCGCGT 59.587 61.111 4.92 0.00 35.37 6.01
57 58 2.355126 CCCATGATCGAGTCCGCG 60.355 66.667 0.00 0.00 35.37 6.46
58 59 2.663188 GCCCATGATCGAGTCCGC 60.663 66.667 0.00 0.00 35.37 5.54
59 60 1.179174 TAGGCCCATGATCGAGTCCG 61.179 60.000 0.00 0.00 37.07 4.79
60 61 1.001406 CTTAGGCCCATGATCGAGTCC 59.999 57.143 0.00 0.00 0.00 3.85
61 62 1.606737 GCTTAGGCCCATGATCGAGTC 60.607 57.143 0.00 0.00 0.00 3.36
62 63 0.394565 GCTTAGGCCCATGATCGAGT 59.605 55.000 0.00 0.00 0.00 4.18
63 64 3.223661 GCTTAGGCCCATGATCGAG 57.776 57.895 0.00 0.00 0.00 4.04
75 76 0.768221 TAGATGGGCCTGGGCTTAGG 60.768 60.000 20.47 4.30 41.60 2.69
76 77 0.398318 GTAGATGGGCCTGGGCTTAG 59.602 60.000 20.47 0.00 41.60 2.18
77 78 1.060163 GGTAGATGGGCCTGGGCTTA 61.060 60.000 20.47 10.04 41.60 3.09
78 79 2.386935 GGTAGATGGGCCTGGGCTT 61.387 63.158 20.47 8.07 41.60 4.35
79 80 2.774351 GGTAGATGGGCCTGGGCT 60.774 66.667 20.47 0.06 41.60 5.19
80 81 3.890926 GGGTAGATGGGCCTGGGC 61.891 72.222 12.58 12.58 41.06 5.36
81 82 3.560251 CGGGTAGATGGGCCTGGG 61.560 72.222 4.53 0.00 0.00 4.45
82 83 2.445845 TCGGGTAGATGGGCCTGG 60.446 66.667 4.53 0.00 0.00 4.45
83 84 2.822399 GTCGGGTAGATGGGCCTG 59.178 66.667 4.53 0.00 0.00 4.85
84 85 2.838225 CGTCGGGTAGATGGGCCT 60.838 66.667 4.53 0.00 32.27 5.19
89 90 1.830279 TATAGGCCGTCGGGTAGATG 58.170 55.000 14.38 0.00 34.97 2.90
90 91 2.822707 ATATAGGCCGTCGGGTAGAT 57.177 50.000 14.38 0.00 34.97 1.98
91 92 3.614092 CTTATATAGGCCGTCGGGTAGA 58.386 50.000 14.38 0.00 34.97 2.59
92 93 2.686915 CCTTATATAGGCCGTCGGGTAG 59.313 54.545 14.38 0.00 37.17 3.18
93 94 2.308570 TCCTTATATAGGCCGTCGGGTA 59.691 50.000 14.38 0.00 44.37 3.69
94 95 1.076024 TCCTTATATAGGCCGTCGGGT 59.924 52.381 14.38 0.00 44.37 5.28
95 96 1.749634 CTCCTTATATAGGCCGTCGGG 59.250 57.143 14.38 0.00 44.37 5.14
96 97 1.749634 CCTCCTTATATAGGCCGTCGG 59.250 57.143 6.99 6.99 44.37 4.79
103 104 3.460857 GCCATCGCCTCCTTATATAGG 57.539 52.381 0.00 0.00 46.27 2.57
116 117 2.803155 TTCACTCCACAGGCCATCGC 62.803 60.000 5.01 0.00 0.00 4.58
117 118 1.021390 GTTCACTCCACAGGCCATCG 61.021 60.000 5.01 0.00 0.00 3.84
118 119 0.678048 GGTTCACTCCACAGGCCATC 60.678 60.000 5.01 0.00 0.00 3.51
119 120 1.380302 GGTTCACTCCACAGGCCAT 59.620 57.895 5.01 0.00 0.00 4.40
120 121 2.829384 GGGTTCACTCCACAGGCCA 61.829 63.158 5.01 0.00 0.00 5.36
121 122 1.198759 TAGGGTTCACTCCACAGGCC 61.199 60.000 0.00 0.00 0.00 5.19
122 123 0.690762 TTAGGGTTCACTCCACAGGC 59.309 55.000 0.00 0.00 0.00 4.85
123 124 1.978580 AGTTAGGGTTCACTCCACAGG 59.021 52.381 0.00 0.00 0.00 4.00
124 125 2.352814 CGAGTTAGGGTTCACTCCACAG 60.353 54.545 0.00 0.00 36.80 3.66
125 126 1.616865 CGAGTTAGGGTTCACTCCACA 59.383 52.381 0.00 0.00 36.80 4.17
126 127 1.672145 GCGAGTTAGGGTTCACTCCAC 60.672 57.143 0.00 0.00 36.80 4.02
127 128 0.606604 GCGAGTTAGGGTTCACTCCA 59.393 55.000 0.00 0.00 36.80 3.86
128 129 0.896226 AGCGAGTTAGGGTTCACTCC 59.104 55.000 0.00 0.00 36.80 3.85
129 130 1.544691 TGAGCGAGTTAGGGTTCACTC 59.455 52.381 0.00 0.00 36.78 3.51
130 131 1.272769 GTGAGCGAGTTAGGGTTCACT 59.727 52.381 0.00 0.00 40.07 3.41
131 132 1.272769 AGTGAGCGAGTTAGGGTTCAC 59.727 52.381 0.58 0.58 42.48 3.18
132 133 1.544691 GAGTGAGCGAGTTAGGGTTCA 59.455 52.381 0.00 0.00 0.00 3.18
133 134 1.135053 GGAGTGAGCGAGTTAGGGTTC 60.135 57.143 0.00 0.00 0.00 3.62
134 135 0.896226 GGAGTGAGCGAGTTAGGGTT 59.104 55.000 0.00 0.00 0.00 4.11
135 136 0.971447 GGGAGTGAGCGAGTTAGGGT 60.971 60.000 0.00 0.00 0.00 4.34
136 137 0.684805 AGGGAGTGAGCGAGTTAGGG 60.685 60.000 0.00 0.00 0.00 3.53
137 138 0.741915 GAGGGAGTGAGCGAGTTAGG 59.258 60.000 0.00 0.00 0.00 2.69
138 139 1.464734 TGAGGGAGTGAGCGAGTTAG 58.535 55.000 0.00 0.00 0.00 2.34
139 140 1.751351 CATGAGGGAGTGAGCGAGTTA 59.249 52.381 0.00 0.00 0.00 2.24
140 141 0.534412 CATGAGGGAGTGAGCGAGTT 59.466 55.000 0.00 0.00 0.00 3.01
141 142 1.954362 GCATGAGGGAGTGAGCGAGT 61.954 60.000 0.00 0.00 0.00 4.18
142 143 1.227205 GCATGAGGGAGTGAGCGAG 60.227 63.158 0.00 0.00 0.00 5.03
143 144 1.984026 TGCATGAGGGAGTGAGCGA 60.984 57.895 0.00 0.00 0.00 4.93
144 145 1.812922 GTGCATGAGGGAGTGAGCG 60.813 63.158 0.00 0.00 0.00 5.03
145 146 0.321919 TTGTGCATGAGGGAGTGAGC 60.322 55.000 0.00 0.00 0.00 4.26
146 147 1.271001 TGTTGTGCATGAGGGAGTGAG 60.271 52.381 0.00 0.00 0.00 3.51
147 148 0.764271 TGTTGTGCATGAGGGAGTGA 59.236 50.000 0.00 0.00 0.00 3.41
148 149 0.877071 GTGTTGTGCATGAGGGAGTG 59.123 55.000 0.00 0.00 0.00 3.51
149 150 0.767375 AGTGTTGTGCATGAGGGAGT 59.233 50.000 0.00 0.00 0.00 3.85
150 151 2.625737 CTAGTGTTGTGCATGAGGGAG 58.374 52.381 0.00 0.00 0.00 4.30
151 152 1.339055 GCTAGTGTTGTGCATGAGGGA 60.339 52.381 0.00 0.00 0.00 4.20
152 153 1.089920 GCTAGTGTTGTGCATGAGGG 58.910 55.000 0.00 0.00 0.00 4.30
153 154 1.736126 CAGCTAGTGTTGTGCATGAGG 59.264 52.381 0.00 0.00 0.00 3.86
154 155 2.420642 ACAGCTAGTGTTGTGCATGAG 58.579 47.619 0.00 0.00 34.94 2.90
155 156 2.549064 ACAGCTAGTGTTGTGCATGA 57.451 45.000 0.00 0.00 34.94 3.07
165 166 7.767261 AGAGAAACAGTAGATAACAGCTAGTG 58.233 38.462 5.05 5.05 42.34 2.74
166 167 7.832187 AGAGAGAAACAGTAGATAACAGCTAGT 59.168 37.037 0.00 0.00 0.00 2.57
167 168 8.220755 AGAGAGAAACAGTAGATAACAGCTAG 57.779 38.462 0.00 0.00 0.00 3.42
168 169 8.582657 AAGAGAGAAACAGTAGATAACAGCTA 57.417 34.615 0.00 0.00 0.00 3.32
169 170 7.475137 AAGAGAGAAACAGTAGATAACAGCT 57.525 36.000 0.00 0.00 0.00 4.24
170 171 7.600752 ACAAAGAGAGAAACAGTAGATAACAGC 59.399 37.037 0.00 0.00 0.00 4.40
171 172 8.920665 CACAAAGAGAGAAACAGTAGATAACAG 58.079 37.037 0.00 0.00 0.00 3.16
172 173 8.421784 ACACAAAGAGAGAAACAGTAGATAACA 58.578 33.333 0.00 0.00 0.00 2.41
173 174 8.819643 ACACAAAGAGAGAAACAGTAGATAAC 57.180 34.615 0.00 0.00 0.00 1.89
174 175 8.861086 AGACACAAAGAGAGAAACAGTAGATAA 58.139 33.333 0.00 0.00 0.00 1.75
175 176 8.410673 AGACACAAAGAGAGAAACAGTAGATA 57.589 34.615 0.00 0.00 0.00 1.98
176 177 7.296628 AGACACAAAGAGAGAAACAGTAGAT 57.703 36.000 0.00 0.00 0.00 1.98
177 178 6.716934 AGACACAAAGAGAGAAACAGTAGA 57.283 37.500 0.00 0.00 0.00 2.59
179 180 9.909644 GTATTAGACACAAAGAGAGAAACAGTA 57.090 33.333 0.00 0.00 0.00 2.74
180 181 8.643324 AGTATTAGACACAAAGAGAGAAACAGT 58.357 33.333 0.00 0.00 0.00 3.55
181 182 9.482627 AAGTATTAGACACAAAGAGAGAAACAG 57.517 33.333 0.00 0.00 0.00 3.16
215 216 8.076178 CCATTCGTTCACTATTCTTGAAAAAGT 58.924 33.333 0.00 0.00 34.78 2.66
216 217 8.289618 TCCATTCGTTCACTATTCTTGAAAAAG 58.710 33.333 0.00 0.00 34.78 2.27
217 218 8.160521 TCCATTCGTTCACTATTCTTGAAAAA 57.839 30.769 0.00 0.00 34.78 1.94
218 219 7.444183 ACTCCATTCGTTCACTATTCTTGAAAA 59.556 33.333 0.00 0.00 34.78 2.29
219 220 6.934645 ACTCCATTCGTTCACTATTCTTGAAA 59.065 34.615 0.00 0.00 34.78 2.69
220 221 6.464222 ACTCCATTCGTTCACTATTCTTGAA 58.536 36.000 0.00 0.00 0.00 2.69
221 222 6.037786 ACTCCATTCGTTCACTATTCTTGA 57.962 37.500 0.00 0.00 0.00 3.02
247 248 8.574737 ACGGTCTCTATTATGGTCTAATGTAAC 58.425 37.037 0.00 0.00 0.00 2.50
268 269 5.220491 GCTTCTGAATATGAACTGAACGGTC 60.220 44.000 0.00 0.00 0.00 4.79
271 272 5.349817 AGTGCTTCTGAATATGAACTGAACG 59.650 40.000 0.00 0.00 0.00 3.95
272 273 6.593382 AGAGTGCTTCTGAATATGAACTGAAC 59.407 38.462 0.00 0.00 33.93 3.18
277 278 7.551035 AATGAGAGTGCTTCTGAATATGAAC 57.449 36.000 0.00 0.00 35.87 3.18
359 360 8.897752 AGCTGGATTGTCTATATTTGAGTTTTC 58.102 33.333 0.00 0.00 0.00 2.29
360 361 8.814038 AGCTGGATTGTCTATATTTGAGTTTT 57.186 30.769 0.00 0.00 0.00 2.43
364 365 9.295214 CGTATAGCTGGATTGTCTATATTTGAG 57.705 37.037 0.00 0.00 30.70 3.02
371 372 5.047235 GGTTCCGTATAGCTGGATTGTCTAT 60.047 44.000 0.00 0.00 33.42 1.98
381 382 8.665685 GGAAAAATATATGGTTCCGTATAGCTG 58.334 37.037 13.85 0.00 30.85 4.24
390 391 9.325198 GAAATGTTGGGAAAAATATATGGTTCC 57.675 33.333 15.09 15.09 39.08 3.62
391 392 9.883142 TGAAATGTTGGGAAAAATATATGGTTC 57.117 29.630 0.00 0.00 0.00 3.62
398 399 8.688747 TGCTTTTGAAATGTTGGGAAAAATAT 57.311 26.923 0.00 0.00 0.00 1.28
416 417 5.801947 GCAGGTAACATATGTTCTGCTTTTG 59.198 40.000 33.75 21.33 45.07 2.44
417 418 5.476599 TGCAGGTAACATATGTTCTGCTTTT 59.523 36.000 36.72 16.53 46.88 2.27
549 866 1.436195 CGCGTGATATTGGTGGGGTG 61.436 60.000 0.00 0.00 0.00 4.61
700 3956 5.532025 AAGTTCAAACGATCGAAATCTCC 57.468 39.130 24.34 3.77 0.00 3.71
711 3967 3.121126 GCGAGATTCGAAAGTTCAAACGA 60.121 43.478 0.00 0.00 43.74 3.85
794 4050 0.962489 CTGGTCTCTGGTCAGTTCGT 59.038 55.000 0.00 0.00 0.00 3.85
800 4056 1.229209 GGGGTCTGGTCTCTGGTCA 60.229 63.158 0.00 0.00 0.00 4.02
801 4057 0.973496 GAGGGGTCTGGTCTCTGGTC 60.973 65.000 0.00 0.00 0.00 4.02
863 4119 5.277345 GCTATAAATTAGACTTGTGGGTGCG 60.277 44.000 0.00 0.00 0.00 5.34
913 4169 1.146566 AGAATGGATGGGATTGGGAGC 59.853 52.381 0.00 0.00 0.00 4.70
1183 4456 1.529438 TCGATTCAAGCAAACGGACAC 59.471 47.619 0.00 0.00 0.00 3.67
1184 4457 1.872388 TCGATTCAAGCAAACGGACA 58.128 45.000 0.00 0.00 0.00 4.02
1187 4460 2.095263 ACCAATCGATTCAAGCAAACGG 60.095 45.455 7.92 5.77 0.00 4.44
1194 4467 4.436050 CGACCAAGAACCAATCGATTCAAG 60.436 45.833 7.92 2.74 34.77 3.02
1199 4493 1.278127 ACCGACCAAGAACCAATCGAT 59.722 47.619 0.00 0.00 34.77 3.59
1203 4497 1.876416 CGACACCGACCAAGAACCAAT 60.876 52.381 0.00 0.00 38.22 3.16
1204 4498 0.531090 CGACACCGACCAAGAACCAA 60.531 55.000 0.00 0.00 38.22 3.67
1382 4789 5.024555 GCATTCTTCTGTTAGCAATCGAAC 58.975 41.667 0.00 0.00 0.00 3.95
1421 4838 2.079158 ACATGAAAGACATCCTGCACG 58.921 47.619 0.00 0.00 37.07 5.34
1477 4920 7.497249 CGAATTTATCACTGGAGAGGAAGAATT 59.503 37.037 0.00 0.00 0.00 2.17
1516 4964 6.369890 TCGAGGAAAGTCAAGAATTCAGATTG 59.630 38.462 8.44 3.96 0.00 2.67
1522 4970 3.997021 TGCTCGAGGAAAGTCAAGAATTC 59.003 43.478 15.58 0.00 0.00 2.17
1523 4971 3.999663 CTGCTCGAGGAAAGTCAAGAATT 59.000 43.478 15.58 0.00 0.00 2.17
1524 4973 3.594134 CTGCTCGAGGAAAGTCAAGAAT 58.406 45.455 15.58 0.00 0.00 2.40
1532 5014 1.965754 CTCCCCCTGCTCGAGGAAAG 61.966 65.000 15.58 5.59 46.33 2.62
1537 5019 2.430610 CCTTCTCCCCCTGCTCGAG 61.431 68.421 8.45 8.45 0.00 4.04
2048 5616 6.773200 TCTCACTAGATACAGTGTTCCATAGG 59.227 42.308 0.00 0.00 45.11 2.57
2110 5679 6.899393 AGAATTGTAAGATGCAACTGGAAA 57.101 33.333 0.00 0.00 0.00 3.13
2172 5741 5.892686 TGTGGAAGATTCATGATAATGGCAA 59.107 36.000 0.00 0.00 0.00 4.52
2189 5758 6.582677 TTGGGTGTACAAATATTGTGGAAG 57.417 37.500 0.00 0.00 45.03 3.46
2218 5787 9.926751 CAGTTATTACATGATCAACTTCACATC 57.073 33.333 0.00 0.00 0.00 3.06
2261 5862 9.666626 CGGTTTAATTTTACAACATACAGAACA 57.333 29.630 0.00 0.00 0.00 3.18
2266 5876 9.666626 CTCAACGGTTTAATTTTACAACATACA 57.333 29.630 0.00 0.00 0.00 2.29
2277 5887 5.519722 CAGCTCAACTCAACGGTTTAATTT 58.480 37.500 0.00 0.00 0.00 1.82
2312 5922 6.587226 TGTATGCAAGTTTCATCTTCATTTGC 59.413 34.615 0.00 0.00 39.72 3.68
2359 5969 8.863049 CAGCAATAAACAGGTCAAATTTATCAC 58.137 33.333 0.00 0.00 30.13 3.06
2363 5973 7.531857 TCCAGCAATAAACAGGTCAAATTTA 57.468 32.000 0.00 0.00 0.00 1.40
2369 5979 4.211125 TGTTTCCAGCAATAAACAGGTCA 58.789 39.130 6.45 0.00 32.17 4.02
2457 6071 1.009829 GCAGGATACAAGGAAGCACG 58.990 55.000 0.00 0.00 41.41 5.34
2458 6072 1.065126 AGGCAGGATACAAGGAAGCAC 60.065 52.381 0.00 0.00 41.41 4.40
2461 6075 2.768527 TCAGAGGCAGGATACAAGGAAG 59.231 50.000 0.00 0.00 41.41 3.46
2464 6078 3.474600 CAATCAGAGGCAGGATACAAGG 58.525 50.000 0.00 0.00 41.41 3.61
2465 6079 3.135348 TCCAATCAGAGGCAGGATACAAG 59.865 47.826 0.00 0.00 41.41 3.16
2466 6080 3.114606 TCCAATCAGAGGCAGGATACAA 58.885 45.455 0.00 0.00 41.41 2.41
2467 6081 2.763039 TCCAATCAGAGGCAGGATACA 58.237 47.619 0.00 0.00 41.41 2.29
2468 6082 4.363991 AATCCAATCAGAGGCAGGATAC 57.636 45.455 0.00 0.00 38.09 2.24
2470 6084 3.967467 AAATCCAATCAGAGGCAGGAT 57.033 42.857 0.00 0.00 40.66 3.24
2471 6085 3.744940 AAAATCCAATCAGAGGCAGGA 57.255 42.857 0.00 0.00 0.00 3.86
2495 6112 8.853126 CATGATTTCCCAGCTGATAATCTTTTA 58.147 33.333 17.39 5.65 0.00 1.52
2496 6113 7.343833 ACATGATTTCCCAGCTGATAATCTTTT 59.656 33.333 17.39 9.07 0.00 2.27
2504 6121 3.021695 CACACATGATTTCCCAGCTGAT 58.978 45.455 17.39 0.00 0.00 2.90
2512 6129 2.816087 AGCAGTGACACACATGATTTCC 59.184 45.455 8.59 0.00 36.74 3.13
2549 6166 9.578576 AATGTAGACCTGCATCATTTACATAAT 57.421 29.630 1.24 0.00 34.83 1.28
2678 6300 8.181904 ACTCAGTTCAAATATTCAACCAATGT 57.818 30.769 6.62 1.10 0.00 2.71
2733 6355 5.647658 CAGCCATATGAACTACCAACAGAAA 59.352 40.000 3.65 0.00 0.00 2.52
2853 7996 8.369218 ACTAGTTTGGCAGAAATCAAAAATTG 57.631 30.769 0.00 0.00 35.08 2.32
2893 8036 8.732854 TCTATTTTGGAGATACCCCATAAATGT 58.267 33.333 0.00 0.00 38.00 2.71
2903 8046 8.207545 AGTTGAGTCATCTATTTTGGAGATACC 58.792 37.037 1.70 0.00 32.27 2.73
2904 8047 9.606631 AAGTTGAGTCATCTATTTTGGAGATAC 57.393 33.333 4.14 0.00 32.27 2.24
2908 8051 8.103948 ACAAAGTTGAGTCATCTATTTTGGAG 57.896 34.615 14.35 1.25 40.00 3.86
2910 8053 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
2941 8084 9.461312 TCCCTCGTTGTACTAACTTTAGTATAA 57.539 33.333 11.18 11.63 45.11 0.98
2942 8085 9.113838 CTCCCTCGTTGTACTAACTTTAGTATA 57.886 37.037 11.18 6.79 45.11 1.47
2943 8086 7.613411 ACTCCCTCGTTGTACTAACTTTAGTAT 59.387 37.037 11.18 0.00 45.11 2.12
2944 8087 6.942576 ACTCCCTCGTTGTACTAACTTTAGTA 59.057 38.462 4.98 4.98 43.36 1.82
2945 8088 5.772169 ACTCCCTCGTTGTACTAACTTTAGT 59.228 40.000 6.85 6.85 45.39 2.24
2946 8089 6.264841 ACTCCCTCGTTGTACTAACTTTAG 57.735 41.667 0.00 0.00 36.82 1.85
2947 8090 6.942576 ACTACTCCCTCGTTGTACTAACTTTA 59.057 38.462 0.00 0.00 0.00 1.85
2948 8091 5.772169 ACTACTCCCTCGTTGTACTAACTTT 59.228 40.000 0.00 0.00 0.00 2.66
2949 8092 5.320277 ACTACTCCCTCGTTGTACTAACTT 58.680 41.667 0.00 0.00 0.00 2.66
2950 8093 4.916183 ACTACTCCCTCGTTGTACTAACT 58.084 43.478 0.00 0.00 0.00 2.24
2951 8094 5.182001 TGAACTACTCCCTCGTTGTACTAAC 59.818 44.000 0.00 0.00 0.00 2.34
2952 8095 5.182001 GTGAACTACTCCCTCGTTGTACTAA 59.818 44.000 0.00 0.00 0.00 2.24
2953 8096 4.697352 GTGAACTACTCCCTCGTTGTACTA 59.303 45.833 0.00 0.00 0.00 1.82
2954 8097 3.505293 GTGAACTACTCCCTCGTTGTACT 59.495 47.826 0.00 0.00 0.00 2.73
2955 8098 3.254166 TGTGAACTACTCCCTCGTTGTAC 59.746 47.826 0.00 0.00 0.00 2.90
2956 8099 3.489355 TGTGAACTACTCCCTCGTTGTA 58.511 45.455 0.00 0.00 0.00 2.41
2957 8100 2.313317 TGTGAACTACTCCCTCGTTGT 58.687 47.619 0.00 0.00 0.00 3.32
2958 8101 3.254060 CATGTGAACTACTCCCTCGTTG 58.746 50.000 0.00 0.00 0.00 4.10
2959 8102 2.233922 CCATGTGAACTACTCCCTCGTT 59.766 50.000 0.00 0.00 0.00 3.85
2960 8103 1.825474 CCATGTGAACTACTCCCTCGT 59.175 52.381 0.00 0.00 0.00 4.18
2961 8104 1.471676 GCCATGTGAACTACTCCCTCG 60.472 57.143 0.00 0.00 0.00 4.63
2962 8105 1.834263 AGCCATGTGAACTACTCCCTC 59.166 52.381 0.00 0.00 0.00 4.30
2963 8106 1.556911 CAGCCATGTGAACTACTCCCT 59.443 52.381 0.00 0.00 0.00 4.20
2964 8107 1.555075 TCAGCCATGTGAACTACTCCC 59.445 52.381 0.00 0.00 0.00 4.30
2965 8108 3.334583 TTCAGCCATGTGAACTACTCC 57.665 47.619 0.00 0.00 31.31 3.85
2966 8109 6.985188 TTATTTCAGCCATGTGAACTACTC 57.015 37.500 0.00 0.00 36.15 2.59
2967 8110 7.629222 GCAATTATTTCAGCCATGTGAACTACT 60.629 37.037 0.00 0.00 36.15 2.57
3021 8164 7.661437 TGTGACATAGCAAACAGAGTTTAAGAT 59.339 33.333 0.00 0.00 0.00 2.40
3022 8165 6.989759 TGTGACATAGCAAACAGAGTTTAAGA 59.010 34.615 0.00 0.00 0.00 2.10
3028 8171 4.342862 ACTGTGACATAGCAAACAGAGT 57.657 40.909 8.54 0.00 42.09 3.24
3029 8172 5.928839 ACTAACTGTGACATAGCAAACAGAG 59.071 40.000 8.54 0.00 42.09 3.35
3030 8173 5.853936 ACTAACTGTGACATAGCAAACAGA 58.146 37.500 8.54 0.00 42.09 3.41
3041 8184 5.979993 TCCTGTTTACAACTAACTGTGACA 58.020 37.500 0.00 0.00 0.00 3.58
3185 8329 2.747855 GGGAGGGCAAGACAAGCG 60.748 66.667 0.00 0.00 0.00 4.68
3220 8364 5.423610 AGAGTGGACAGTAGAGTATGCAATT 59.576 40.000 0.00 0.00 0.00 2.32
3230 8374 3.165071 TCATGCAAGAGTGGACAGTAGA 58.835 45.455 0.00 0.00 0.00 2.59
3231 8375 3.056250 ACTCATGCAAGAGTGGACAGTAG 60.056 47.826 22.93 0.00 46.58 2.57
3232 8376 2.899900 ACTCATGCAAGAGTGGACAGTA 59.100 45.455 22.93 0.00 46.58 2.74
3233 8377 1.696336 ACTCATGCAAGAGTGGACAGT 59.304 47.619 22.93 0.00 46.58 3.55
3234 8378 2.469274 ACTCATGCAAGAGTGGACAG 57.531 50.000 22.93 0.00 46.58 3.51
3243 8387 7.222417 CAGAGAAACTACAGATACTCATGCAAG 59.778 40.741 0.00 0.00 0.00 4.01
3264 8408 5.693104 GTGAAAATCAATTTTGCTGCAGAGA 59.307 36.000 20.43 0.77 39.86 3.10
3265 8409 5.464057 TGTGAAAATCAATTTTGCTGCAGAG 59.536 36.000 20.43 0.00 39.86 3.35
3266 8410 5.358090 TGTGAAAATCAATTTTGCTGCAGA 58.642 33.333 20.43 0.00 39.86 4.26
3267 8411 5.235616 ACTGTGAAAATCAATTTTGCTGCAG 59.764 36.000 10.11 10.11 39.86 4.41
3268 8412 5.117584 ACTGTGAAAATCAATTTTGCTGCA 58.882 33.333 0.00 0.00 39.86 4.41
3270 8414 7.473027 AGAACTGTGAAAATCAATTTTGCTG 57.527 32.000 5.48 5.50 39.86 4.41
3321 8476 6.041637 ACATAGTGGTGAGTACTGTTTCTGAA 59.958 38.462 0.00 0.00 0.00 3.02
3340 8495 6.476378 AGATTTGCCAGTTCAACTACATAGT 58.524 36.000 0.00 0.00 38.39 2.12
3341 8496 6.992063 AGATTTGCCAGTTCAACTACATAG 57.008 37.500 0.00 0.00 0.00 2.23
3342 8497 6.538742 GCTAGATTTGCCAGTTCAACTACATA 59.461 38.462 0.00 0.00 0.00 2.29
3343 8498 5.355350 GCTAGATTTGCCAGTTCAACTACAT 59.645 40.000 0.00 0.00 0.00 2.29
3350 8616 4.397420 TGAAAGCTAGATTTGCCAGTTCA 58.603 39.130 11.36 0.00 0.00 3.18
3384 8650 2.435372 TTCACACTGAAAGCCCACTT 57.565 45.000 0.00 0.00 37.60 3.16
3389 8655 1.873591 ACGACATTCACACTGAAAGCC 59.126 47.619 0.00 0.00 40.12 4.35
3390 8656 3.421826 CGTACGACATTCACACTGAAAGC 60.422 47.826 10.44 0.00 40.12 3.51
3391 8657 3.421826 GCGTACGACATTCACACTGAAAG 60.422 47.826 21.65 0.00 40.12 2.62
3392 8658 2.473609 GCGTACGACATTCACACTGAAA 59.526 45.455 21.65 0.00 40.12 2.69
3393 8659 2.055838 GCGTACGACATTCACACTGAA 58.944 47.619 21.65 0.00 41.09 3.02
3402 8673 2.450609 AACAGAAGGCGTACGACATT 57.549 45.000 25.52 15.98 0.00 2.71
3407 8678 3.806316 AATGAAAACAGAAGGCGTACG 57.194 42.857 11.84 11.84 0.00 3.67
3417 8688 5.414144 ACACCAAAACCCAAAATGAAAACAG 59.586 36.000 0.00 0.00 0.00 3.16
3423 8694 4.508662 GAACACACCAAAACCCAAAATGA 58.491 39.130 0.00 0.00 0.00 2.57
3424 8695 3.625313 GGAACACACCAAAACCCAAAATG 59.375 43.478 0.00 0.00 0.00 2.32
3425 8696 3.371059 GGGAACACACCAAAACCCAAAAT 60.371 43.478 0.00 0.00 37.50 1.82
3428 8699 1.196012 GGGAACACACCAAAACCCAA 58.804 50.000 0.00 0.00 37.50 4.12
3429 8700 0.688087 GGGGAACACACCAAAACCCA 60.688 55.000 0.00 0.00 39.10 4.51
3471 8742 3.368248 AGGCCCATTACGTACTCTAACA 58.632 45.455 0.00 0.00 0.00 2.41
3472 8743 5.520376 TTAGGCCCATTACGTACTCTAAC 57.480 43.478 0.00 0.00 0.00 2.34
3473 8744 5.011329 CCATTAGGCCCATTACGTACTCTAA 59.989 44.000 0.00 0.00 0.00 2.10
3474 8745 4.525487 CCATTAGGCCCATTACGTACTCTA 59.475 45.833 0.00 0.00 0.00 2.43
3475 8746 3.323979 CCATTAGGCCCATTACGTACTCT 59.676 47.826 0.00 0.00 0.00 3.24
3476 8747 3.322828 TCCATTAGGCCCATTACGTACTC 59.677 47.826 0.00 0.00 33.74 2.59
3477 8748 3.070590 GTCCATTAGGCCCATTACGTACT 59.929 47.826 0.00 0.00 33.74 2.73
3478 8749 3.396560 GTCCATTAGGCCCATTACGTAC 58.603 50.000 0.00 0.00 33.74 3.67
3479 8750 2.369532 GGTCCATTAGGCCCATTACGTA 59.630 50.000 0.00 0.00 33.74 3.57
3480 8751 1.142262 GGTCCATTAGGCCCATTACGT 59.858 52.381 0.00 0.00 33.74 3.57
3481 8752 1.544759 GGGTCCATTAGGCCCATTACG 60.545 57.143 0.00 0.00 45.38 3.18
3482 8753 2.287977 GGGTCCATTAGGCCCATTAC 57.712 55.000 0.00 0.00 45.38 1.89
3499 8770 9.155785 TCTCTAATTAACCCTAAGACTAATGGG 57.844 37.037 0.00 0.00 44.89 4.00
3505 8776 9.382307 CCCTTATCTCTAATTAACCCTAAGACT 57.618 37.037 0.00 0.00 0.00 3.24
3506 8777 9.156940 ACCCTTATCTCTAATTAACCCTAAGAC 57.843 37.037 0.00 0.00 0.00 3.01
3507 8778 9.377238 GACCCTTATCTCTAATTAACCCTAAGA 57.623 37.037 0.00 0.00 0.00 2.10
3508 8779 8.305317 CGACCCTTATCTCTAATTAACCCTAAG 58.695 40.741 0.00 0.00 0.00 2.18
3509 8780 7.256083 GCGACCCTTATCTCTAATTAACCCTAA 60.256 40.741 0.00 0.00 0.00 2.69
3510 8781 6.210185 GCGACCCTTATCTCTAATTAACCCTA 59.790 42.308 0.00 0.00 0.00 3.53
3511 8782 5.011840 GCGACCCTTATCTCTAATTAACCCT 59.988 44.000 0.00 0.00 0.00 4.34
3512 8783 5.011840 AGCGACCCTTATCTCTAATTAACCC 59.988 44.000 0.00 0.00 0.00 4.11
3513 8784 6.099159 AGCGACCCTTATCTCTAATTAACC 57.901 41.667 0.00 0.00 0.00 2.85
3514 8785 6.073711 GCAAGCGACCCTTATCTCTAATTAAC 60.074 42.308 0.00 0.00 31.00 2.01
3515 8786 5.989777 GCAAGCGACCCTTATCTCTAATTAA 59.010 40.000 0.00 0.00 31.00 1.40
3516 8787 5.304614 AGCAAGCGACCCTTATCTCTAATTA 59.695 40.000 0.00 0.00 31.00 1.40
3517 8788 4.101741 AGCAAGCGACCCTTATCTCTAATT 59.898 41.667 0.00 0.00 31.00 1.40
3518 8789 3.643792 AGCAAGCGACCCTTATCTCTAAT 59.356 43.478 0.00 0.00 31.00 1.73
3519 8790 3.031736 AGCAAGCGACCCTTATCTCTAA 58.968 45.455 0.00 0.00 31.00 2.10
3520 8791 2.667470 AGCAAGCGACCCTTATCTCTA 58.333 47.619 0.00 0.00 31.00 2.43
3521 8792 1.490574 AGCAAGCGACCCTTATCTCT 58.509 50.000 0.00 0.00 31.00 3.10
3522 8793 2.317530 AAGCAAGCGACCCTTATCTC 57.682 50.000 0.00 0.00 31.00 2.75
3523 8794 2.103263 CCTAAGCAAGCGACCCTTATCT 59.897 50.000 0.00 0.00 31.00 1.98
3524 8795 2.484889 CCTAAGCAAGCGACCCTTATC 58.515 52.381 0.00 0.00 31.00 1.75
3525 8796 1.141053 CCCTAAGCAAGCGACCCTTAT 59.859 52.381 0.00 0.00 31.00 1.73
3526 8797 0.539986 CCCTAAGCAAGCGACCCTTA 59.460 55.000 0.00 0.00 31.00 2.69
3527 8798 1.299976 CCCTAAGCAAGCGACCCTT 59.700 57.895 0.00 0.00 0.00 3.95
3528 8799 2.670148 CCCCTAAGCAAGCGACCCT 61.670 63.158 0.00 0.00 0.00 4.34
3529 8800 2.124695 CCCCTAAGCAAGCGACCC 60.125 66.667 0.00 0.00 0.00 4.46
3530 8801 1.449778 GACCCCTAAGCAAGCGACC 60.450 63.158 0.00 0.00 0.00 4.79
3531 8802 0.321298 TTGACCCCTAAGCAAGCGAC 60.321 55.000 0.00 0.00 0.00 5.19
3532 8803 0.036388 CTTGACCCCTAAGCAAGCGA 60.036 55.000 0.00 0.00 33.48 4.93
3533 8804 0.321653 ACTTGACCCCTAAGCAAGCG 60.322 55.000 0.00 0.00 41.97 4.68
3534 8805 2.781681 TACTTGACCCCTAAGCAAGC 57.218 50.000 0.00 0.00 41.97 4.01
3535 8806 3.010420 GCTTACTTGACCCCTAAGCAAG 58.990 50.000 0.00 0.00 41.32 4.01
3536 8807 2.290705 GGCTTACTTGACCCCTAAGCAA 60.291 50.000 10.04 0.00 42.79 3.91
3537 8808 1.280998 GGCTTACTTGACCCCTAAGCA 59.719 52.381 10.04 0.00 42.79 3.91
3538 8809 1.560146 AGGCTTACTTGACCCCTAAGC 59.440 52.381 0.00 0.00 41.07 3.09
3554 8825 0.251077 CTTGACTCCCAAGCAAGGCT 60.251 55.000 0.00 0.00 44.90 4.58
3555 8826 2.261215 CTTGACTCCCAAGCAAGGC 58.739 57.895 0.00 0.00 44.90 4.35
3562 8833 4.232091 AGAGAGGTTTACTTGACTCCCAA 58.768 43.478 0.00 0.00 0.00 4.12
3563 8834 3.858135 AGAGAGGTTTACTTGACTCCCA 58.142 45.455 0.00 0.00 0.00 4.37
3564 8835 7.842887 ATATAGAGAGGTTTACTTGACTCCC 57.157 40.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.