Multiple sequence alignment - TraesCS7B01G084800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G084800 chr7B 100.000 3022 0 0 1 3022 96598673 96601694 0.000000e+00 5581
1 TraesCS7B01G084800 chr7B 82.051 195 23 6 1342 1536 96585610 96585792 4.030000e-34 156
2 TraesCS7B01G084800 chr7D 90.095 1262 95 20 1763 3008 134464147 134465394 0.000000e+00 1611
3 TraesCS7B01G084800 chr7D 81.512 979 100 39 851 1776 134450464 134451414 0.000000e+00 730
4 TraesCS7B01G084800 chr7D 91.597 357 16 5 191 537 134450082 134450434 5.860000e-132 481
5 TraesCS7B01G084800 chr7D 87.562 201 18 3 1 200 134449768 134449962 3.030000e-55 226
6 TraesCS7B01G084800 chr7D 81.116 233 35 5 1304 1536 134443368 134443591 8.610000e-41 178
7 TraesCS7B01G084800 chr7A 91.551 722 44 12 2016 2728 133625593 133626306 0.000000e+00 979
8 TraesCS7B01G084800 chr7A 85.222 1015 71 40 1074 2027 133624526 133625522 0.000000e+00 970
9 TraesCS7B01G084800 chr7A 88.000 525 35 9 83 598 133621052 133621557 2.010000e-166 595
10 TraesCS7B01G084800 chr7A 85.776 232 17 9 851 1070 133621583 133621810 6.520000e-57 231
11 TraesCS7B01G084800 chr7A 81.974 233 30 7 1304 1536 133605773 133605993 1.430000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G084800 chr7B 96598673 96601694 3021 False 5581.00 5581 100.000000 1 3022 1 chr7B.!!$F2 3021
1 TraesCS7B01G084800 chr7D 134464147 134465394 1247 False 1611.00 1611 90.095000 1763 3008 1 chr7D.!!$F2 1245
2 TraesCS7B01G084800 chr7D 134449768 134451414 1646 False 479.00 730 86.890333 1 1776 3 chr7D.!!$F3 1775
3 TraesCS7B01G084800 chr7A 133621052 133626306 5254 False 693.75 979 87.637250 83 2728 4 chr7A.!!$F2 2645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 1044 0.034337 TCCACCCACGAAGCTACAAC 59.966 55.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2834 5887 0.033601 TCTTGTTTGTGTGGTGCCCT 60.034 50.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 8.962064 CACTTAGGTGAGCAAGGATAGTTGCA 62.962 46.154 10.93 0.00 46.83 4.08
56 58 2.487934 AGGATAGTTGCATGCGATGAC 58.512 47.619 11.68 7.99 0.00 3.06
79 81 3.797256 CCCGAGATATTTCACAAGACGAC 59.203 47.826 0.00 0.00 0.00 4.34
80 82 3.797256 CCGAGATATTTCACAAGACGACC 59.203 47.826 0.00 0.00 0.00 4.79
287 431 2.098831 GCTACCGCCAAACTCGTCC 61.099 63.158 0.00 0.00 0.00 4.79
317 470 4.281525 TGTTTCTCGGCAAAACAGTAAC 57.718 40.909 5.92 0.00 40.64 2.50
345 501 1.821332 GCTGGCTGGCTATCACCAC 60.821 63.158 2.00 0.00 35.33 4.16
346 502 1.153086 CTGGCTGGCTATCACCACC 60.153 63.158 2.00 0.00 35.33 4.61
347 503 2.203070 GGCTGGCTATCACCACCG 60.203 66.667 0.00 0.00 35.33 4.94
466 624 2.466140 CCCGGCCGAAATAACCACG 61.466 63.158 30.73 5.03 0.00 4.94
519 677 1.300931 TCTCACTGTCAAGCGCACC 60.301 57.895 11.47 0.00 0.00 5.01
530 688 0.530744 AAGCGCACCTACGAAGATCA 59.469 50.000 11.47 0.00 34.06 2.92
561 719 0.668535 GCTAATGGGCGGACAAATCC 59.331 55.000 0.00 0.00 42.28 3.01
612 777 4.523173 TCTCACGTATCTTGGACTTTGAGT 59.477 41.667 0.00 0.00 31.42 3.41
614 779 6.208007 TCTCACGTATCTTGGACTTTGAGTAA 59.792 38.462 0.00 0.00 31.42 2.24
615 780 6.387465 TCACGTATCTTGGACTTTGAGTAAG 58.613 40.000 0.00 0.00 39.87 2.34
617 782 7.175467 TCACGTATCTTGGACTTTGAGTAAGTA 59.825 37.037 0.00 0.00 47.00 2.24
618 783 7.811236 CACGTATCTTGGACTTTGAGTAAGTAA 59.189 37.037 0.00 0.00 47.00 2.24
619 784 8.529476 ACGTATCTTGGACTTTGAGTAAGTAAT 58.471 33.333 0.00 0.00 47.00 1.89
620 785 9.367444 CGTATCTTGGACTTTGAGTAAGTAATT 57.633 33.333 0.00 0.00 47.00 1.40
623 788 8.752766 TCTTGGACTTTGAGTAAGTAATTACG 57.247 34.615 9.91 0.00 47.00 3.18
624 789 8.362639 TCTTGGACTTTGAGTAAGTAATTACGT 58.637 33.333 9.91 9.47 47.00 3.57
625 790 9.630098 CTTGGACTTTGAGTAAGTAATTACGTA 57.370 33.333 9.91 8.45 47.00 3.57
626 791 8.970691 TGGACTTTGAGTAAGTAATTACGTAC 57.029 34.615 25.28 25.28 47.00 3.67
627 792 8.575589 TGGACTTTGAGTAAGTAATTACGTACA 58.424 33.333 30.50 16.56 47.00 2.90
628 793 9.410556 GGACTTTGAGTAAGTAATTACGTACAA 57.589 33.333 30.50 20.76 47.00 2.41
630 795 9.971922 ACTTTGAGTAAGTAATTACGTACAACT 57.028 29.630 30.50 19.29 45.22 3.16
632 797 8.746922 TTGAGTAAGTAATTACGTACAACTGG 57.253 34.615 30.50 0.00 41.52 4.00
633 798 7.885297 TGAGTAAGTAATTACGTACAACTGGT 58.115 34.615 30.50 16.75 41.52 4.00
634 799 7.809331 TGAGTAAGTAATTACGTACAACTGGTG 59.191 37.037 30.50 0.00 41.52 4.17
635 800 7.885297 AGTAAGTAATTACGTACAACTGGTGA 58.115 34.615 30.50 2.82 41.52 4.02
636 801 8.526147 AGTAAGTAATTACGTACAACTGGTGAT 58.474 33.333 30.50 13.31 41.52 3.06
637 802 7.823149 AAGTAATTACGTACAACTGGTGATC 57.177 36.000 9.91 0.00 0.00 2.92
638 803 6.927416 AGTAATTACGTACAACTGGTGATCA 58.073 36.000 9.91 0.00 0.00 2.92
639 804 7.553334 AGTAATTACGTACAACTGGTGATCAT 58.447 34.615 9.91 0.00 0.00 2.45
640 805 6.662414 AATTACGTACAACTGGTGATCATG 57.338 37.500 0.00 0.00 0.00 3.07
641 806 2.346803 ACGTACAACTGGTGATCATGC 58.653 47.619 0.00 0.00 0.00 4.06
642 807 1.665679 CGTACAACTGGTGATCATGCC 59.334 52.381 0.00 0.00 0.00 4.40
643 808 2.710377 GTACAACTGGTGATCATGCCA 58.290 47.619 0.00 1.21 0.00 4.92
644 809 2.291209 ACAACTGGTGATCATGCCAA 57.709 45.000 0.00 0.00 33.93 4.52
645 810 2.811410 ACAACTGGTGATCATGCCAAT 58.189 42.857 0.00 0.00 33.93 3.16
646 811 3.966979 ACAACTGGTGATCATGCCAATA 58.033 40.909 0.00 0.00 33.93 1.90
647 812 4.539726 ACAACTGGTGATCATGCCAATAT 58.460 39.130 0.00 0.00 33.93 1.28
648 813 4.340097 ACAACTGGTGATCATGCCAATATG 59.660 41.667 0.00 4.70 33.93 1.78
649 814 2.889045 ACTGGTGATCATGCCAATATGC 59.111 45.455 0.00 0.00 33.93 3.14
650 815 2.230508 CTGGTGATCATGCCAATATGCC 59.769 50.000 0.00 0.00 33.93 4.40
651 816 2.241160 GGTGATCATGCCAATATGCCA 58.759 47.619 0.00 0.00 0.00 4.92
652 817 2.829720 GGTGATCATGCCAATATGCCAT 59.170 45.455 0.00 0.00 0.00 4.40
653 818 3.259876 GGTGATCATGCCAATATGCCATT 59.740 43.478 0.00 0.00 0.00 3.16
654 819 4.242475 GTGATCATGCCAATATGCCATTG 58.758 43.478 0.00 1.99 0.00 2.82
655 820 2.823924 TCATGCCAATATGCCATTGC 57.176 45.000 3.22 1.04 38.26 3.56
656 821 1.000052 TCATGCCAATATGCCATTGCG 60.000 47.619 3.22 0.00 41.78 4.85
657 822 1.000052 CATGCCAATATGCCATTGCGA 60.000 47.619 3.22 0.00 41.78 5.10
658 823 0.385029 TGCCAATATGCCATTGCGAC 59.615 50.000 3.22 0.00 41.78 5.19
659 824 0.318955 GCCAATATGCCATTGCGACC 60.319 55.000 3.22 0.00 41.78 4.79
660 825 1.321474 CCAATATGCCATTGCGACCT 58.679 50.000 3.22 0.00 41.78 3.85
661 826 2.503331 CCAATATGCCATTGCGACCTA 58.497 47.619 3.22 0.00 41.78 3.08
662 827 2.226437 CCAATATGCCATTGCGACCTAC 59.774 50.000 3.22 0.00 41.78 3.18
663 828 1.795768 ATATGCCATTGCGACCTACG 58.204 50.000 0.00 0.00 41.78 3.51
664 829 0.462375 TATGCCATTGCGACCTACGT 59.538 50.000 0.00 0.00 44.60 3.57
665 830 1.089481 ATGCCATTGCGACCTACGTG 61.089 55.000 0.00 0.00 44.60 4.49
666 831 1.740296 GCCATTGCGACCTACGTGT 60.740 57.895 0.00 0.00 44.60 4.49
667 832 1.693083 GCCATTGCGACCTACGTGTC 61.693 60.000 0.00 0.00 44.60 3.67
668 833 0.108804 CCATTGCGACCTACGTGTCT 60.109 55.000 0.00 0.00 44.60 3.41
669 834 1.269166 CATTGCGACCTACGTGTCTC 58.731 55.000 0.00 0.00 44.60 3.36
670 835 0.179171 ATTGCGACCTACGTGTCTCG 60.179 55.000 0.00 2.02 44.60 4.04
671 836 1.229975 TTGCGACCTACGTGTCTCGA 61.230 55.000 12.93 0.00 44.60 4.04
672 837 1.022982 TGCGACCTACGTGTCTCGAT 61.023 55.000 12.93 0.00 44.60 3.59
673 838 0.316032 GCGACCTACGTGTCTCGATC 60.316 60.000 12.93 0.00 44.60 3.69
674 839 0.304098 CGACCTACGTGTCTCGATCC 59.696 60.000 0.00 0.00 42.86 3.36
675 840 1.376543 GACCTACGTGTCTCGATCCA 58.623 55.000 0.00 0.00 42.86 3.41
676 841 1.331138 GACCTACGTGTCTCGATCCAG 59.669 57.143 0.00 0.00 42.86 3.86
677 842 1.339824 ACCTACGTGTCTCGATCCAGT 60.340 52.381 0.00 0.00 42.86 4.00
678 843 1.743958 CCTACGTGTCTCGATCCAGTT 59.256 52.381 0.00 0.00 42.86 3.16
679 844 2.223294 CCTACGTGTCTCGATCCAGTTC 60.223 54.545 0.00 0.00 42.86 3.01
680 845 0.168348 ACGTGTCTCGATCCAGTTCG 59.832 55.000 0.56 0.00 42.86 3.95
681 846 0.446616 CGTGTCTCGATCCAGTTCGA 59.553 55.000 1.30 1.30 45.27 3.71
682 847 1.135774 CGTGTCTCGATCCAGTTCGAA 60.136 52.381 0.00 0.00 46.54 3.71
683 848 2.520979 GTGTCTCGATCCAGTTCGAAG 58.479 52.381 0.00 0.00 46.54 3.79
684 849 2.161808 GTGTCTCGATCCAGTTCGAAGA 59.838 50.000 0.00 0.00 46.54 2.87
685 850 3.017442 TGTCTCGATCCAGTTCGAAGAT 58.983 45.455 0.00 0.00 46.54 2.40
686 851 4.035324 GTGTCTCGATCCAGTTCGAAGATA 59.965 45.833 0.00 0.00 46.54 1.98
687 852 4.035324 TGTCTCGATCCAGTTCGAAGATAC 59.965 45.833 0.00 0.00 46.54 2.24
688 853 3.247886 TCTCGATCCAGTTCGAAGATACG 59.752 47.826 0.00 5.03 46.54 3.06
689 854 2.289820 TCGATCCAGTTCGAAGATACGG 59.710 50.000 0.00 0.00 44.56 4.02
690 855 2.395654 GATCCAGTTCGAAGATACGGC 58.604 52.381 0.00 0.00 35.04 5.68
691 856 1.179152 TCCAGTTCGAAGATACGGCA 58.821 50.000 0.00 0.00 35.04 5.69
692 857 1.546923 TCCAGTTCGAAGATACGGCAA 59.453 47.619 0.00 0.00 35.04 4.52
693 858 2.167693 TCCAGTTCGAAGATACGGCAAT 59.832 45.455 0.00 0.00 35.04 3.56
694 859 2.540101 CCAGTTCGAAGATACGGCAATC 59.460 50.000 0.00 0.00 35.04 2.67
695 860 2.216488 CAGTTCGAAGATACGGCAATCG 59.784 50.000 0.00 0.00 40.39 3.34
696 861 1.521423 GTTCGAAGATACGGCAATCGG 59.479 52.381 0.00 0.00 39.17 4.18
697 862 1.026584 TCGAAGATACGGCAATCGGA 58.973 50.000 0.00 0.00 44.45 4.55
698 863 1.129326 CGAAGATACGGCAATCGGAC 58.871 55.000 0.00 0.00 44.45 4.79
699 864 1.269102 CGAAGATACGGCAATCGGACT 60.269 52.381 0.00 0.00 44.45 3.85
700 865 2.128035 GAAGATACGGCAATCGGACTG 58.872 52.381 0.00 0.00 44.45 3.51
701 866 1.399714 AGATACGGCAATCGGACTGA 58.600 50.000 0.00 0.00 44.45 3.41
702 867 1.754803 AGATACGGCAATCGGACTGAA 59.245 47.619 0.00 0.00 44.45 3.02
703 868 2.167693 AGATACGGCAATCGGACTGAAA 59.832 45.455 0.00 0.00 44.45 2.69
704 869 1.717194 TACGGCAATCGGACTGAAAC 58.283 50.000 0.00 0.00 44.45 2.78
705 870 0.953960 ACGGCAATCGGACTGAAACC 60.954 55.000 0.00 0.00 44.45 3.27
706 871 0.673644 CGGCAATCGGACTGAAACCT 60.674 55.000 0.00 0.00 34.75 3.50
707 872 1.087501 GGCAATCGGACTGAAACCTC 58.912 55.000 0.00 0.00 0.00 3.85
708 873 1.610624 GGCAATCGGACTGAAACCTCA 60.611 52.381 0.00 0.00 0.00 3.86
720 885 4.712763 CTGAAACCTCAGTATTCGTTTGC 58.287 43.478 0.00 0.00 43.64 3.68
721 886 3.185594 TGAAACCTCAGTATTCGTTTGCG 59.814 43.478 0.00 0.00 39.92 4.85
722 887 2.450609 ACCTCAGTATTCGTTTGCGT 57.549 45.000 0.00 0.00 39.49 5.24
723 888 3.581024 ACCTCAGTATTCGTTTGCGTA 57.419 42.857 0.00 0.00 39.49 4.42
724 889 3.248266 ACCTCAGTATTCGTTTGCGTAC 58.752 45.455 0.00 0.00 39.49 3.67
725 890 3.247442 CCTCAGTATTCGTTTGCGTACA 58.753 45.455 0.00 0.00 39.49 2.90
726 891 3.303495 CCTCAGTATTCGTTTGCGTACAG 59.697 47.826 0.00 0.00 39.49 2.74
727 892 3.904571 TCAGTATTCGTTTGCGTACAGT 58.095 40.909 0.00 0.00 39.49 3.55
728 893 4.300803 TCAGTATTCGTTTGCGTACAGTT 58.699 39.130 0.00 0.00 39.49 3.16
729 894 4.149221 TCAGTATTCGTTTGCGTACAGTTG 59.851 41.667 0.00 0.00 39.49 3.16
730 895 2.961522 ATTCGTTTGCGTACAGTTGG 57.038 45.000 0.00 0.00 39.49 3.77
731 896 1.937278 TTCGTTTGCGTACAGTTGGA 58.063 45.000 0.00 0.00 39.49 3.53
732 897 1.210870 TCGTTTGCGTACAGTTGGAC 58.789 50.000 0.00 0.00 39.49 4.02
733 898 1.202440 TCGTTTGCGTACAGTTGGACT 60.202 47.619 0.00 0.00 39.49 3.85
734 899 1.595794 CGTTTGCGTACAGTTGGACTT 59.404 47.619 0.00 0.00 0.00 3.01
735 900 2.348218 CGTTTGCGTACAGTTGGACTTC 60.348 50.000 0.00 0.00 0.00 3.01
736 901 2.605837 TTGCGTACAGTTGGACTTCA 57.394 45.000 0.00 0.00 0.00 3.02
737 902 2.148916 TGCGTACAGTTGGACTTCAG 57.851 50.000 0.00 0.00 0.00 3.02
738 903 1.411246 TGCGTACAGTTGGACTTCAGT 59.589 47.619 0.00 0.00 0.00 3.41
739 904 2.159014 TGCGTACAGTTGGACTTCAGTT 60.159 45.455 0.00 0.00 0.00 3.16
740 905 3.068448 TGCGTACAGTTGGACTTCAGTTA 59.932 43.478 0.00 0.00 0.00 2.24
741 906 3.427863 GCGTACAGTTGGACTTCAGTTAC 59.572 47.826 0.00 0.00 0.00 2.50
742 907 3.667261 CGTACAGTTGGACTTCAGTTACG 59.333 47.826 0.00 0.00 0.00 3.18
743 908 4.555313 CGTACAGTTGGACTTCAGTTACGA 60.555 45.833 0.00 0.00 0.00 3.43
744 909 4.602340 ACAGTTGGACTTCAGTTACGAT 57.398 40.909 0.00 0.00 0.00 3.73
745 910 4.957296 ACAGTTGGACTTCAGTTACGATT 58.043 39.130 0.00 0.00 0.00 3.34
746 911 4.989168 ACAGTTGGACTTCAGTTACGATTC 59.011 41.667 0.00 0.00 0.00 2.52
747 912 4.988540 CAGTTGGACTTCAGTTACGATTCA 59.011 41.667 0.00 0.00 0.00 2.57
748 913 5.639506 CAGTTGGACTTCAGTTACGATTCAT 59.360 40.000 0.00 0.00 0.00 2.57
749 914 6.147821 CAGTTGGACTTCAGTTACGATTCATT 59.852 38.462 0.00 0.00 0.00 2.57
750 915 6.710744 AGTTGGACTTCAGTTACGATTCATTT 59.289 34.615 0.00 0.00 0.00 2.32
751 916 6.721571 TGGACTTCAGTTACGATTCATTTC 57.278 37.500 0.00 0.00 0.00 2.17
752 917 5.347635 TGGACTTCAGTTACGATTCATTTCG 59.652 40.000 0.00 0.00 44.56 3.46
753 918 5.575606 GGACTTCAGTTACGATTCATTTCGA 59.424 40.000 0.31 0.00 41.62 3.71
754 919 6.090358 GGACTTCAGTTACGATTCATTTCGAA 59.910 38.462 0.00 0.00 41.62 3.71
755 920 7.050281 ACTTCAGTTACGATTCATTTCGAAG 57.950 36.000 0.00 0.00 41.62 3.79
756 921 5.450376 TCAGTTACGATTCATTTCGAAGC 57.550 39.130 0.00 0.00 41.62 3.86
757 922 5.168569 TCAGTTACGATTCATTTCGAAGCT 58.831 37.500 0.00 0.00 41.62 3.74
758 923 5.637810 TCAGTTACGATTCATTTCGAAGCTT 59.362 36.000 0.00 0.00 41.62 3.74
759 924 5.954349 CAGTTACGATTCATTTCGAAGCTTC 59.046 40.000 16.84 16.84 41.62 3.86
760 925 5.869888 AGTTACGATTCATTTCGAAGCTTCT 59.130 36.000 23.50 2.32 41.62 2.85
761 926 6.369065 AGTTACGATTCATTTCGAAGCTTCTT 59.631 34.615 23.50 3.80 41.62 2.52
762 927 5.209944 ACGATTCATTTCGAAGCTTCTTC 57.790 39.130 23.50 0.00 41.62 2.87
763 928 4.201628 ACGATTCATTTCGAAGCTTCTTCG 60.202 41.667 23.50 19.38 41.62 3.79
764 929 4.201628 CGATTCATTTCGAAGCTTCTTCGT 60.202 41.667 23.50 5.30 41.62 3.85
765 930 4.647291 TTCATTTCGAAGCTTCTTCGTC 57.353 40.909 23.50 0.00 42.09 4.20
766 931 2.661675 TCATTTCGAAGCTTCTTCGTCG 59.338 45.455 23.50 10.78 42.09 5.12
767 932 0.782384 TTTCGAAGCTTCTTCGTCGC 59.218 50.000 23.50 0.00 42.09 5.19
768 933 0.318360 TTCGAAGCTTCTTCGTCGCA 60.318 50.000 23.50 0.00 42.09 5.10
769 934 0.318360 TCGAAGCTTCTTCGTCGCAA 60.318 50.000 23.50 6.15 42.09 4.85
770 935 0.716108 CGAAGCTTCTTCGTCGCAAT 59.284 50.000 23.50 0.00 37.18 3.56
771 936 1.266598 CGAAGCTTCTTCGTCGCAATC 60.267 52.381 23.50 0.00 37.18 2.67
772 937 0.716108 AAGCTTCTTCGTCGCAATCG 59.284 50.000 0.00 0.00 0.00 3.34
773 938 0.109272 AGCTTCTTCGTCGCAATCGA 60.109 50.000 0.00 0.00 43.28 3.59
786 951 5.553290 TCGCAATCGAACATTGGAAATAA 57.447 34.783 0.00 0.00 42.44 1.40
787 952 5.568482 TCGCAATCGAACATTGGAAATAAG 58.432 37.500 0.00 0.00 42.44 1.73
788 953 5.352846 TCGCAATCGAACATTGGAAATAAGA 59.647 36.000 0.00 0.00 42.44 2.10
789 954 5.452302 CGCAATCGAACATTGGAAATAAGAC 59.548 40.000 0.00 0.00 38.10 3.01
790 955 5.452302 GCAATCGAACATTGGAAATAAGACG 59.548 40.000 0.00 0.00 0.00 4.18
791 956 5.734855 ATCGAACATTGGAAATAAGACGG 57.265 39.130 0.00 0.00 0.00 4.79
792 957 4.823157 TCGAACATTGGAAATAAGACGGA 58.177 39.130 0.00 0.00 0.00 4.69
793 958 4.868171 TCGAACATTGGAAATAAGACGGAG 59.132 41.667 0.00 0.00 0.00 4.63
794 959 4.494199 CGAACATTGGAAATAAGACGGAGC 60.494 45.833 0.00 0.00 0.00 4.70
795 960 4.222124 ACATTGGAAATAAGACGGAGCT 57.778 40.909 0.00 0.00 0.00 4.09
796 961 5.353394 ACATTGGAAATAAGACGGAGCTA 57.647 39.130 0.00 0.00 0.00 3.32
797 962 5.930135 ACATTGGAAATAAGACGGAGCTAT 58.070 37.500 0.00 0.00 0.00 2.97
798 963 5.992217 ACATTGGAAATAAGACGGAGCTATC 59.008 40.000 0.00 0.00 0.00 2.08
799 964 4.602340 TGGAAATAAGACGGAGCTATCC 57.398 45.455 0.00 0.00 42.81 2.59
811 976 4.001618 GGAGCTATCCAAATCAGACTCC 57.998 50.000 0.00 0.00 45.87 3.85
812 977 3.389329 GGAGCTATCCAAATCAGACTCCA 59.611 47.826 0.00 0.00 45.87 3.86
813 978 4.376146 GAGCTATCCAAATCAGACTCCAC 58.624 47.826 0.00 0.00 0.00 4.02
814 979 4.036518 AGCTATCCAAATCAGACTCCACT 58.963 43.478 0.00 0.00 0.00 4.00
815 980 4.100808 AGCTATCCAAATCAGACTCCACTC 59.899 45.833 0.00 0.00 0.00 3.51
816 981 3.533606 ATCCAAATCAGACTCCACTCG 57.466 47.619 0.00 0.00 0.00 4.18
817 982 2.525368 TCCAAATCAGACTCCACTCGA 58.475 47.619 0.00 0.00 0.00 4.04
818 983 2.231478 TCCAAATCAGACTCCACTCGAC 59.769 50.000 0.00 0.00 0.00 4.20
819 984 2.611518 CAAATCAGACTCCACTCGACC 58.388 52.381 0.00 0.00 0.00 4.79
820 985 1.924731 AATCAGACTCCACTCGACCA 58.075 50.000 0.00 0.00 0.00 4.02
821 986 1.924731 ATCAGACTCCACTCGACCAA 58.075 50.000 0.00 0.00 0.00 3.67
822 987 1.924731 TCAGACTCCACTCGACCAAT 58.075 50.000 0.00 0.00 0.00 3.16
823 988 1.546029 TCAGACTCCACTCGACCAATG 59.454 52.381 0.00 0.00 0.00 2.82
824 989 0.247736 AGACTCCACTCGACCAATGC 59.752 55.000 0.00 0.00 0.00 3.56
825 990 1.078759 GACTCCACTCGACCAATGCG 61.079 60.000 0.00 0.00 0.00 4.73
826 991 2.434185 TCCACTCGACCAATGCGC 60.434 61.111 0.00 0.00 0.00 6.09
827 992 3.853330 CCACTCGACCAATGCGCG 61.853 66.667 0.00 0.00 0.00 6.86
828 993 3.853330 CACTCGACCAATGCGCGG 61.853 66.667 8.83 0.00 0.00 6.46
829 994 4.063967 ACTCGACCAATGCGCGGA 62.064 61.111 8.83 5.00 0.00 5.54
830 995 3.257561 CTCGACCAATGCGCGGAG 61.258 66.667 8.83 0.00 0.00 4.63
831 996 3.699955 CTCGACCAATGCGCGGAGA 62.700 63.158 8.83 0.00 0.00 3.71
832 997 3.257561 CGACCAATGCGCGGAGAG 61.258 66.667 8.83 0.85 0.00 3.20
833 998 2.892425 GACCAATGCGCGGAGAGG 60.892 66.667 17.48 17.48 0.00 3.69
834 999 3.665675 GACCAATGCGCGGAGAGGT 62.666 63.158 23.19 23.19 0.00 3.85
835 1000 3.197790 CCAATGCGCGGAGAGGTG 61.198 66.667 8.83 2.08 0.00 4.00
836 1001 3.869272 CAATGCGCGGAGAGGTGC 61.869 66.667 8.83 0.00 43.54 5.01
841 1006 3.414700 CGCGGAGAGGTGCACAAC 61.415 66.667 20.43 11.67 0.00 3.32
849 1014 3.585856 GGTGCACAACCGGTATGG 58.414 61.111 20.43 2.89 39.81 2.74
869 1034 4.508128 CGGATCCGTCCACCCACG 62.508 72.222 26.35 0.00 45.37 4.94
879 1044 0.034337 TCCACCCACGAAGCTACAAC 59.966 55.000 0.00 0.00 0.00 3.32
885 1051 3.181494 ACCCACGAAGCTACAACAAAAAC 60.181 43.478 0.00 0.00 0.00 2.43
886 1052 3.066203 CCCACGAAGCTACAACAAAAACT 59.934 43.478 0.00 0.00 0.00 2.66
888 1054 5.202640 CCACGAAGCTACAACAAAAACTAC 58.797 41.667 0.00 0.00 0.00 2.73
909 1075 3.642848 ACAGATGTGAAAACAAAGGGCAT 59.357 39.130 0.00 0.00 0.00 4.40
913 1079 5.481473 AGATGTGAAAACAAAGGGCATACAT 59.519 36.000 0.00 0.00 0.00 2.29
963 1129 3.695606 AGCCGCTTCTTCTCCGCA 61.696 61.111 0.00 0.00 0.00 5.69
1004 1173 3.406361 CAGGCAGCGTCGTGTGTC 61.406 66.667 0.00 0.00 0.00 3.67
1007 1176 3.406361 GCAGCGTCGTGTGTCTGG 61.406 66.667 0.00 0.00 0.00 3.86
1008 1177 2.335011 CAGCGTCGTGTGTCTGGA 59.665 61.111 0.00 0.00 0.00 3.86
1009 1178 1.299850 CAGCGTCGTGTGTCTGGAA 60.300 57.895 0.00 0.00 0.00 3.53
1071 3954 1.078708 ACGCCATAACCAACTCCCG 60.079 57.895 0.00 0.00 0.00 5.14
1072 3955 1.219664 CGCCATAACCAACTCCCGA 59.780 57.895 0.00 0.00 0.00 5.14
1075 3962 0.461339 CCATAACCAACTCCCGACCG 60.461 60.000 0.00 0.00 0.00 4.79
1135 4022 3.036084 CGCCTGACACGGTGACAC 61.036 66.667 16.29 0.00 36.68 3.67
1175 4066 1.676006 GCGCATATAAAACAGGGCAGT 59.324 47.619 0.30 0.00 39.41 4.40
1177 4068 2.033299 CGCATATAAAACAGGGCAGTGG 59.967 50.000 0.00 0.00 0.00 4.00
1187 4078 1.074775 GGGCAGTGGTGTTCATCCA 59.925 57.895 0.00 0.00 0.00 3.41
1190 4081 1.098050 GCAGTGGTGTTCATCCATCC 58.902 55.000 0.00 0.00 37.30 3.51
1191 4082 1.340405 GCAGTGGTGTTCATCCATCCT 60.340 52.381 0.00 0.00 37.30 3.24
1192 4083 2.881403 GCAGTGGTGTTCATCCATCCTT 60.881 50.000 0.00 0.00 37.30 3.36
1194 4085 3.941483 CAGTGGTGTTCATCCATCCTTAC 59.059 47.826 0.00 0.00 37.30 2.34
1195 4086 3.054361 AGTGGTGTTCATCCATCCTTACC 60.054 47.826 0.00 0.00 37.30 2.85
1196 4087 2.916269 TGGTGTTCATCCATCCTTACCA 59.084 45.455 0.00 0.00 34.82 3.25
1197 4088 3.527253 TGGTGTTCATCCATCCTTACCAT 59.473 43.478 0.00 0.00 32.47 3.55
1198 4089 4.724293 TGGTGTTCATCCATCCTTACCATA 59.276 41.667 0.00 0.00 32.47 2.74
1199 4090 5.163205 TGGTGTTCATCCATCCTTACCATAG 60.163 44.000 0.00 0.00 32.47 2.23
1200 4091 4.757149 GTGTTCATCCATCCTTACCATAGC 59.243 45.833 0.00 0.00 0.00 2.97
1201 4092 4.660303 TGTTCATCCATCCTTACCATAGCT 59.340 41.667 0.00 0.00 0.00 3.32
1202 4093 5.843969 TGTTCATCCATCCTTACCATAGCTA 59.156 40.000 0.00 0.00 0.00 3.32
1203 4094 6.166982 GTTCATCCATCCTTACCATAGCTAC 58.833 44.000 0.00 0.00 0.00 3.58
1204 4095 5.655394 TCATCCATCCTTACCATAGCTACT 58.345 41.667 0.00 0.00 0.00 2.57
1205 4096 6.800890 TCATCCATCCTTACCATAGCTACTA 58.199 40.000 0.00 0.00 0.00 1.82
1206 4097 6.663953 TCATCCATCCTTACCATAGCTACTAC 59.336 42.308 0.00 0.00 0.00 2.73
1207 4098 6.215515 TCCATCCTTACCATAGCTACTACT 57.784 41.667 0.00 0.00 0.00 2.57
1208 4099 6.010850 TCCATCCTTACCATAGCTACTACTG 58.989 44.000 0.00 0.00 0.00 2.74
1224 4115 5.266709 ACTACTGTACTACCTTCCTCCAA 57.733 43.478 0.00 0.00 0.00 3.53
1257 4171 1.859302 AGCTCTCTCTTTCCATCGGT 58.141 50.000 0.00 0.00 0.00 4.69
1273 4187 1.447140 GGTGATCGCAAGCGGTACA 60.447 57.895 14.98 9.39 40.25 2.90
1274 4188 1.017177 GGTGATCGCAAGCGGTACAA 61.017 55.000 14.98 0.00 40.25 2.41
1296 4212 1.416813 CGAAAGGCAGCTCGCACTAG 61.417 60.000 9.78 0.00 45.17 2.57
1351 4267 1.517832 CGAGATCTTCCGGCCACTT 59.482 57.895 2.24 0.00 0.00 3.16
1394 4310 2.434884 CGCCGGTGTTGCTGATCT 60.435 61.111 6.91 0.00 0.00 2.75
1403 4319 1.078918 TTGCTGATCTCCACAGGCG 60.079 57.895 0.00 0.00 36.09 5.52
1414 4330 1.395045 CCACAGGCGAGGATCAGCTA 61.395 60.000 0.00 0.00 35.53 3.32
1503 4419 2.031919 TTCCATGGCGCTCAACGT 59.968 55.556 6.96 0.00 46.11 3.99
1537 4453 4.028490 TCGCCGCTTTCCATGGGT 62.028 61.111 13.02 0.00 0.00 4.51
1558 4474 1.534235 ACGACAGAGAAGCCAGGGT 60.534 57.895 0.00 0.00 0.00 4.34
1582 4498 1.065928 CCGCCTCCAGCTTAGTACG 59.934 63.158 0.00 0.00 40.39 3.67
1589 4505 5.220820 GCCTCCAGCTTAGTACGTAGTAGT 61.221 50.000 9.94 0.00 43.76 2.73
1591 4507 5.220815 CCTCCAGCTTAGTACGTAGTAGTTG 60.221 48.000 9.94 11.50 45.54 3.16
1592 4508 4.637534 TCCAGCTTAGTACGTAGTAGTTGG 59.362 45.833 22.39 22.39 45.54 3.77
1593 4509 4.397417 CCAGCTTAGTACGTAGTAGTTGGT 59.603 45.833 21.28 14.59 45.54 3.67
1595 4511 6.385033 CAGCTTAGTACGTAGTAGTTGGTTT 58.615 40.000 9.94 0.00 45.54 3.27
1597 4513 5.061435 GCTTAGTACGTAGTAGTTGGTTTGC 59.939 44.000 9.94 3.70 45.54 3.68
1598 4514 4.589216 AGTACGTAGTAGTTGGTTTGCA 57.411 40.909 0.00 0.00 45.54 4.08
1599 4515 4.553323 AGTACGTAGTAGTTGGTTTGCAG 58.447 43.478 0.00 0.00 45.54 4.41
1600 4516 3.738830 ACGTAGTAGTTGGTTTGCAGA 57.261 42.857 0.00 0.00 41.94 4.26
1601 4517 3.387397 ACGTAGTAGTTGGTTTGCAGAC 58.613 45.455 0.00 0.00 41.94 3.51
1602 4518 2.407361 CGTAGTAGTTGGTTTGCAGACG 59.593 50.000 0.70 0.00 0.00 4.18
1603 4519 1.226746 AGTAGTTGGTTTGCAGACGC 58.773 50.000 0.70 0.00 39.24 5.19
1613 4529 3.766644 TGCAGACGCATATGCTCTT 57.233 47.368 24.56 9.41 45.36 2.85
1614 4530 1.575244 TGCAGACGCATATGCTCTTC 58.425 50.000 24.56 18.80 45.36 2.87
1615 4531 0.864455 GCAGACGCATATGCTCTTCC 59.136 55.000 24.56 14.32 40.06 3.46
1616 4532 1.807755 GCAGACGCATATGCTCTTCCA 60.808 52.381 24.56 0.00 40.06 3.53
1617 4533 2.133553 CAGACGCATATGCTCTTCCAG 58.866 52.381 24.56 10.19 39.32 3.86
1618 4534 1.759445 AGACGCATATGCTCTTCCAGT 59.241 47.619 24.56 13.31 39.32 4.00
1621 4537 3.347216 ACGCATATGCTCTTCCAGTTTT 58.653 40.909 24.56 0.00 39.32 2.43
1625 4541 4.400567 GCATATGCTCTTCCAGTTTTCCTT 59.599 41.667 20.64 0.00 38.21 3.36
1639 4555 4.651045 AGTTTTCCTTTTGATCTGGCTGTT 59.349 37.500 0.00 0.00 0.00 3.16
1640 4556 4.589216 TTTCCTTTTGATCTGGCTGTTG 57.411 40.909 0.00 0.00 0.00 3.33
1641 4557 3.507162 TCCTTTTGATCTGGCTGTTGA 57.493 42.857 0.00 0.00 0.00 3.18
1657 4573 4.217118 GCTGTTGACTGAACCTGAATGATT 59.783 41.667 0.00 0.00 33.07 2.57
1658 4574 5.694231 TGTTGACTGAACCTGAATGATTG 57.306 39.130 0.00 0.00 33.07 2.67
1659 4575 5.375773 TGTTGACTGAACCTGAATGATTGA 58.624 37.500 0.00 0.00 33.07 2.57
1660 4576 5.239306 TGTTGACTGAACCTGAATGATTGAC 59.761 40.000 0.00 0.00 33.07 3.18
1661 4577 3.996363 TGACTGAACCTGAATGATTGACG 59.004 43.478 0.00 0.00 0.00 4.35
1662 4578 3.338249 ACTGAACCTGAATGATTGACGG 58.662 45.455 0.00 0.00 0.00 4.79
1684 4622 1.133419 GGTATATTTTTGCCCGGGGGA 60.133 52.381 25.28 9.87 37.50 4.81
1700 4638 2.163613 GGGGGAGTTAAATTGTTGCTCG 59.836 50.000 0.00 0.00 0.00 5.03
1709 4647 0.392193 ATTGTTGCTCGCTCCTCTGG 60.392 55.000 0.00 0.00 0.00 3.86
1713 4651 0.532573 TTGCTCGCTCCTCTGGTTAG 59.467 55.000 0.00 0.00 0.00 2.34
1734 4672 9.909644 GGTTAGAGTGTGTACATGTATAATAGG 57.090 37.037 9.18 0.00 0.00 2.57
1739 4677 8.018537 AGTGTGTACATGTATAATAGGCAAGA 57.981 34.615 9.18 0.00 0.00 3.02
1782 4734 6.714810 TGCTTATGATTACTTGTGACCTTTGT 59.285 34.615 0.00 0.00 0.00 2.83
1940 4901 3.097614 AGCTACCACTGTGTTACCCTAG 58.902 50.000 7.08 0.00 0.00 3.02
1952 4913 5.051153 GTGTTACCCTAGCTCAAAGATAGC 58.949 45.833 0.00 0.00 40.40 2.97
2056 5100 1.680735 GCAAATCAACACACTCACCCA 59.319 47.619 0.00 0.00 0.00 4.51
2156 5200 0.386113 GTCCTATGTCACGCTCTCCC 59.614 60.000 0.00 0.00 0.00 4.30
2253 5299 6.350110 CCATGTTTTCACGGATGGTATTTTCT 60.350 38.462 0.00 0.00 34.78 2.52
2268 5314 6.161381 GGTATTTTCTTGAACACGTCCTAGA 58.839 40.000 0.00 0.00 0.00 2.43
2353 5399 5.461327 ACCTTCCAAATGCCATTGATCTAT 58.539 37.500 0.00 0.00 31.84 1.98
2452 5498 4.495422 ACGCGAAGACTAACTTGATTGAT 58.505 39.130 15.93 0.00 39.13 2.57
2511 5561 1.707989 TGCTGGGGTTGAATTACCTCA 59.292 47.619 0.01 0.01 46.40 3.86
2519 5569 5.589050 GGGGTTGAATTACCTCATGTAGTTC 59.411 44.000 0.00 0.00 43.08 3.01
2528 5578 2.098607 CCTCATGTAGTTCGTAAGCCGA 59.901 50.000 0.00 0.00 45.66 5.54
2594 5647 6.627087 ATTCACTAGAGGAAACCATCTTCA 57.373 37.500 0.00 0.00 36.64 3.02
2698 5751 4.449743 CCATTGGAAGTCAAAAATGCACAG 59.550 41.667 0.00 0.00 39.05 3.66
2740 5793 1.535462 CATGGTTTCGACCACCTGAAC 59.465 52.381 13.05 0.51 43.37 3.18
2789 5842 9.288124 TGCAAAGAATTACGTATCATTTCATTG 57.712 29.630 14.75 14.75 31.64 2.82
2814 5867 9.871238 TGATAAGTAGGAGAGAATTGTTACAAC 57.129 33.333 0.00 0.00 0.00 3.32
2834 5887 1.061346 CAAATAGGAGGGAGGGGGAGA 60.061 57.143 0.00 0.00 0.00 3.71
2862 5915 4.462483 ACCACACAAACAAGAAACACATCT 59.538 37.500 0.00 0.00 0.00 2.90
2872 5925 5.914085 AAGAAACACATCTTGAAGACTCG 57.086 39.130 0.00 0.00 38.22 4.18
2878 5931 2.159170 ACATCTTGAAGACTCGCCTAGC 60.159 50.000 0.00 0.00 0.00 3.42
2884 5937 1.255667 AAGACTCGCCTAGCCCGAAA 61.256 55.000 5.45 0.00 33.92 3.46
2891 5944 0.748005 GCCTAGCCCGAAATCAAGCA 60.748 55.000 0.00 0.00 0.00 3.91
2901 5954 3.577667 CGAAATCAAGCAATGAAAGGCA 58.422 40.909 0.00 0.00 42.54 4.75
2912 5965 2.292828 TGAAAGGCAAAGAGAAGGGG 57.707 50.000 0.00 0.00 0.00 4.79
2955 6008 0.812412 CGACCAACACACGGAACCTT 60.812 55.000 0.00 0.00 0.00 3.50
2956 6009 0.942252 GACCAACACACGGAACCTTC 59.058 55.000 0.00 0.00 0.00 3.46
2963 6016 2.355481 ACGGAACCTTCGTCACGC 60.355 61.111 0.00 0.00 35.87 5.34
2978 6031 4.155733 CGCGGCCACCACTCCATA 62.156 66.667 2.24 0.00 0.00 2.74
2980 6033 1.152963 GCGGCCACCACTCCATAAT 60.153 57.895 2.24 0.00 0.00 1.28
2985 6038 2.706190 GGCCACCACTCCATAATAGACT 59.294 50.000 0.00 0.00 0.00 3.24
2986 6039 3.495100 GGCCACCACTCCATAATAGACTG 60.495 52.174 0.00 0.00 0.00 3.51
2997 6050 8.136165 ACTCCATAATAGACTGAATCAACGTAC 58.864 37.037 0.00 0.00 0.00 3.67
3008 6061 1.727062 TCAACGTACCCCCACCTTAA 58.273 50.000 0.00 0.00 0.00 1.85
3009 6062 2.268107 TCAACGTACCCCCACCTTAAT 58.732 47.619 0.00 0.00 0.00 1.40
3010 6063 2.643801 TCAACGTACCCCCACCTTAATT 59.356 45.455 0.00 0.00 0.00 1.40
3011 6064 3.843027 TCAACGTACCCCCACCTTAATTA 59.157 43.478 0.00 0.00 0.00 1.40
3012 6065 4.474287 TCAACGTACCCCCACCTTAATTAT 59.526 41.667 0.00 0.00 0.00 1.28
3013 6066 4.426736 ACGTACCCCCACCTTAATTATG 57.573 45.455 0.00 0.00 0.00 1.90
3014 6067 3.143728 CGTACCCCCACCTTAATTATGC 58.856 50.000 0.00 0.00 0.00 3.14
3015 6068 2.358322 ACCCCCACCTTAATTATGCG 57.642 50.000 0.00 0.00 0.00 4.73
3016 6069 0.958822 CCCCCACCTTAATTATGCGC 59.041 55.000 0.00 0.00 0.00 6.09
3017 6070 0.958822 CCCCACCTTAATTATGCGCC 59.041 55.000 4.18 0.00 0.00 6.53
3018 6071 1.478654 CCCCACCTTAATTATGCGCCT 60.479 52.381 4.18 0.00 0.00 5.52
3019 6072 2.224670 CCCCACCTTAATTATGCGCCTA 60.225 50.000 4.18 0.00 0.00 3.93
3020 6073 3.074412 CCCACCTTAATTATGCGCCTAG 58.926 50.000 4.18 0.00 0.00 3.02
3021 6074 3.074412 CCACCTTAATTATGCGCCTAGG 58.926 50.000 4.18 3.67 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 2.113860 TGCAACTATCCTTGCTCACC 57.886 50.000 5.56 0.00 45.79 4.02
38 40 1.532868 GGGTCATCGCATGCAACTATC 59.467 52.381 19.57 0.00 0.00 2.08
47 49 1.561643 ATATCTCGGGGTCATCGCAT 58.438 50.000 0.00 0.00 0.00 4.73
56 58 3.123804 CGTCTTGTGAAATATCTCGGGG 58.876 50.000 0.00 0.00 0.00 5.73
79 81 2.818274 GGCTTAGTTCGTGCCCGG 60.818 66.667 0.00 0.00 40.71 5.73
107 109 4.101119 AGCAGGCTTACGGTAATTGTCTAT 59.899 41.667 0.29 0.00 0.00 1.98
159 167 7.347319 TCCCCTCATGGAATATGAAATACAT 57.653 36.000 0.00 0.00 38.56 2.29
160 168 6.778542 TCCCCTCATGGAATATGAAATACA 57.221 37.500 0.00 0.00 35.39 2.29
161 169 7.671398 ACAATCCCCTCATGGAATATGAAATAC 59.329 37.037 0.00 0.00 38.10 1.89
162 170 7.670979 CACAATCCCCTCATGGAATATGAAATA 59.329 37.037 0.00 0.00 38.10 1.40
163 171 6.495872 CACAATCCCCTCATGGAATATGAAAT 59.504 38.462 0.00 0.00 38.10 2.17
225 369 9.758651 ATGATCTTGCTAATTGTACGTTACATA 57.241 29.630 0.00 0.00 38.68 2.29
287 431 1.303309 GCCGAGAAACATGAGATGGG 58.697 55.000 0.00 0.00 33.60 4.00
345 501 1.863012 CGCAGCATTTAACACGCGG 60.863 57.895 12.47 1.27 39.09 6.46
346 502 3.649466 CGCAGCATTTAACACGCG 58.351 55.556 3.53 3.53 36.47 6.01
347 503 1.065031 CCACGCAGCATTTAACACGC 61.065 55.000 0.00 0.00 0.00 5.34
501 659 1.300931 GGTGCGCTTGACAGTGAGA 60.301 57.895 9.73 0.00 31.42 3.27
502 660 0.038251 TAGGTGCGCTTGACAGTGAG 60.038 55.000 9.73 0.00 31.42 3.51
519 677 0.861837 GCGGCCAATGATCTTCGTAG 59.138 55.000 2.24 0.00 0.00 3.51
530 688 1.466025 CCATTAGCATGGCGGCCAAT 61.466 55.000 27.70 17.10 43.95 3.16
553 711 1.363885 GGGCCACGTACGGATTTGTC 61.364 60.000 21.06 4.11 0.00 3.18
612 777 8.522003 TGATCACCAGTTGTACGTAATTACTTA 58.478 33.333 13.56 5.92 0.00 2.24
614 779 6.927416 TGATCACCAGTTGTACGTAATTACT 58.073 36.000 13.56 0.00 0.00 2.24
615 780 7.618442 CATGATCACCAGTTGTACGTAATTAC 58.382 38.462 5.47 5.47 0.00 1.89
616 781 6.256975 GCATGATCACCAGTTGTACGTAATTA 59.743 38.462 0.00 0.00 0.00 1.40
617 782 5.064707 GCATGATCACCAGTTGTACGTAATT 59.935 40.000 0.00 0.00 0.00 1.40
618 783 4.570772 GCATGATCACCAGTTGTACGTAAT 59.429 41.667 0.00 0.00 0.00 1.89
619 784 3.930229 GCATGATCACCAGTTGTACGTAA 59.070 43.478 0.00 0.00 0.00 3.18
620 785 3.517602 GCATGATCACCAGTTGTACGTA 58.482 45.455 0.00 0.00 0.00 3.57
621 786 2.346803 GCATGATCACCAGTTGTACGT 58.653 47.619 0.00 0.00 0.00 3.57
622 787 1.665679 GGCATGATCACCAGTTGTACG 59.334 52.381 0.00 0.00 0.00 3.67
623 788 2.710377 TGGCATGATCACCAGTTGTAC 58.290 47.619 0.00 0.00 0.00 2.90
624 789 3.431673 TTGGCATGATCACCAGTTGTA 57.568 42.857 0.00 0.00 37.24 2.41
625 790 2.291209 TTGGCATGATCACCAGTTGT 57.709 45.000 0.00 0.00 37.24 3.32
626 791 4.794981 GCATATTGGCATGATCACCAGTTG 60.795 45.833 0.00 2.72 37.24 3.16
627 792 3.319972 GCATATTGGCATGATCACCAGTT 59.680 43.478 0.00 0.00 37.24 3.16
628 793 2.889045 GCATATTGGCATGATCACCAGT 59.111 45.455 0.00 1.22 37.24 4.00
629 794 2.230508 GGCATATTGGCATGATCACCAG 59.769 50.000 0.00 0.00 43.14 4.00
630 795 2.241160 GGCATATTGGCATGATCACCA 58.759 47.619 0.00 0.00 43.14 4.17
640 805 0.318955 GGTCGCAATGGCATATTGGC 60.319 55.000 0.00 1.76 44.03 4.52
641 806 1.321474 AGGTCGCAATGGCATATTGG 58.679 50.000 0.00 5.52 41.24 3.16
642 807 2.096268 CGTAGGTCGCAATGGCATATTG 60.096 50.000 0.00 0.00 41.24 1.90
643 808 2.143122 CGTAGGTCGCAATGGCATATT 58.857 47.619 0.00 0.00 41.24 1.28
644 809 1.070134 ACGTAGGTCGCAATGGCATAT 59.930 47.619 0.00 0.00 44.19 1.78
645 810 0.462375 ACGTAGGTCGCAATGGCATA 59.538 50.000 0.00 0.00 44.19 3.14
646 811 1.089481 CACGTAGGTCGCAATGGCAT 61.089 55.000 0.00 0.00 44.19 4.40
647 812 1.739929 CACGTAGGTCGCAATGGCA 60.740 57.895 0.00 0.00 44.19 4.92
648 813 1.693083 GACACGTAGGTCGCAATGGC 61.693 60.000 0.00 0.00 44.19 4.40
649 814 0.108804 AGACACGTAGGTCGCAATGG 60.109 55.000 0.00 0.00 42.62 3.16
650 815 1.269166 GAGACACGTAGGTCGCAATG 58.731 55.000 5.15 0.00 42.62 2.82
651 816 0.179171 CGAGACACGTAGGTCGCAAT 60.179 55.000 9.73 0.00 42.62 3.56
652 817 1.208358 CGAGACACGTAGGTCGCAA 59.792 57.895 9.73 0.00 42.62 4.85
653 818 1.022982 ATCGAGACACGTAGGTCGCA 61.023 55.000 9.73 0.00 42.62 5.10
654 819 0.316032 GATCGAGACACGTAGGTCGC 60.316 60.000 7.53 4.16 42.62 5.19
655 820 0.304098 GGATCGAGACACGTAGGTCG 59.696 60.000 6.33 6.33 42.62 4.79
656 821 1.331138 CTGGATCGAGACACGTAGGTC 59.669 57.143 0.00 0.00 43.13 3.85
657 822 1.339824 ACTGGATCGAGACACGTAGGT 60.340 52.381 12.14 0.00 43.13 3.08
658 823 1.380524 ACTGGATCGAGACACGTAGG 58.619 55.000 12.14 0.00 43.13 3.18
659 824 2.537128 CGAACTGGATCGAGACACGTAG 60.537 54.545 12.14 0.00 45.48 3.51
660 825 1.395954 CGAACTGGATCGAGACACGTA 59.604 52.381 12.14 0.00 45.48 3.57
661 826 0.168348 CGAACTGGATCGAGACACGT 59.832 55.000 12.14 0.00 45.48 4.49
662 827 0.446616 TCGAACTGGATCGAGACACG 59.553 55.000 12.14 12.65 46.12 4.49
669 834 2.651701 CCGTATCTTCGAACTGGATCG 58.348 52.381 0.00 2.91 44.04 3.69
670 835 2.223735 TGCCGTATCTTCGAACTGGATC 60.224 50.000 0.00 0.00 0.00 3.36
671 836 1.754803 TGCCGTATCTTCGAACTGGAT 59.245 47.619 0.00 0.00 0.00 3.41
672 837 1.179152 TGCCGTATCTTCGAACTGGA 58.821 50.000 0.00 0.00 0.00 3.86
673 838 2.004583 TTGCCGTATCTTCGAACTGG 57.995 50.000 0.00 0.00 0.00 4.00
674 839 2.216488 CGATTGCCGTATCTTCGAACTG 59.784 50.000 0.00 0.00 31.74 3.16
675 840 2.460918 CGATTGCCGTATCTTCGAACT 58.539 47.619 0.00 0.00 31.74 3.01
676 841 1.521423 CCGATTGCCGTATCTTCGAAC 59.479 52.381 0.00 0.00 36.31 3.95
677 842 1.406180 TCCGATTGCCGTATCTTCGAA 59.594 47.619 0.00 0.00 36.31 3.71
678 843 1.026584 TCCGATTGCCGTATCTTCGA 58.973 50.000 0.00 0.00 36.31 3.71
679 844 1.129326 GTCCGATTGCCGTATCTTCG 58.871 55.000 0.00 0.00 36.31 3.79
680 845 2.128035 CAGTCCGATTGCCGTATCTTC 58.872 52.381 0.00 0.00 36.31 2.87
681 846 1.754803 TCAGTCCGATTGCCGTATCTT 59.245 47.619 0.00 0.00 36.31 2.40
682 847 1.399714 TCAGTCCGATTGCCGTATCT 58.600 50.000 0.00 0.00 36.31 1.98
683 848 2.218953 TTCAGTCCGATTGCCGTATC 57.781 50.000 0.00 0.00 36.31 2.24
684 849 2.277084 GTTTCAGTCCGATTGCCGTAT 58.723 47.619 0.00 0.00 36.31 3.06
685 850 1.673626 GGTTTCAGTCCGATTGCCGTA 60.674 52.381 0.00 0.00 36.31 4.02
686 851 0.953960 GGTTTCAGTCCGATTGCCGT 60.954 55.000 0.00 0.00 36.31 5.68
687 852 0.673644 AGGTTTCAGTCCGATTGCCG 60.674 55.000 0.00 0.00 38.18 5.69
688 853 1.087501 GAGGTTTCAGTCCGATTGCC 58.912 55.000 0.00 0.00 0.00 4.52
689 854 1.734465 CTGAGGTTTCAGTCCGATTGC 59.266 52.381 0.00 0.00 44.74 3.56
699 864 3.185594 CGCAAACGAATACTGAGGTTTCA 59.814 43.478 0.00 0.00 43.93 2.69
700 865 3.185797 ACGCAAACGAATACTGAGGTTTC 59.814 43.478 0.00 0.00 43.93 2.78
701 866 3.135994 ACGCAAACGAATACTGAGGTTT 58.864 40.909 0.00 0.00 43.93 3.27
702 867 2.762745 ACGCAAACGAATACTGAGGTT 58.237 42.857 0.00 0.00 43.93 3.50
703 868 2.450609 ACGCAAACGAATACTGAGGT 57.549 45.000 0.00 0.00 43.93 3.85
704 869 3.247442 TGTACGCAAACGAATACTGAGG 58.753 45.455 0.00 0.00 43.93 3.86
705 870 3.918591 ACTGTACGCAAACGAATACTGAG 59.081 43.478 0.00 0.00 43.93 3.35
706 871 3.904571 ACTGTACGCAAACGAATACTGA 58.095 40.909 0.00 0.00 43.93 3.41
707 872 4.382831 CAACTGTACGCAAACGAATACTG 58.617 43.478 0.00 0.00 43.93 2.74
708 873 3.430895 CCAACTGTACGCAAACGAATACT 59.569 43.478 0.00 0.00 43.93 2.12
709 874 3.429543 TCCAACTGTACGCAAACGAATAC 59.570 43.478 0.00 0.00 43.93 1.89
710 875 3.429543 GTCCAACTGTACGCAAACGAATA 59.570 43.478 0.00 0.00 43.93 1.75
711 876 2.222445 GTCCAACTGTACGCAAACGAAT 59.778 45.455 0.00 0.00 43.93 3.34
712 877 1.593933 GTCCAACTGTACGCAAACGAA 59.406 47.619 0.00 0.00 43.93 3.85
713 878 1.202440 AGTCCAACTGTACGCAAACGA 60.202 47.619 0.00 0.00 43.93 3.85
715 880 2.610374 TGAAGTCCAACTGTACGCAAAC 59.390 45.455 0.00 0.00 0.00 2.93
716 881 2.869801 CTGAAGTCCAACTGTACGCAAA 59.130 45.455 0.00 0.00 0.00 3.68
717 882 2.159014 ACTGAAGTCCAACTGTACGCAA 60.159 45.455 0.00 0.00 0.00 4.85
718 883 1.411246 ACTGAAGTCCAACTGTACGCA 59.589 47.619 0.00 0.00 0.00 5.24
719 884 2.150397 ACTGAAGTCCAACTGTACGC 57.850 50.000 0.00 0.00 0.00 4.42
720 885 3.667261 CGTAACTGAAGTCCAACTGTACG 59.333 47.826 0.00 0.00 0.00 3.67
721 886 4.863491 TCGTAACTGAAGTCCAACTGTAC 58.137 43.478 0.00 0.00 0.00 2.90
722 887 5.717078 ATCGTAACTGAAGTCCAACTGTA 57.283 39.130 0.00 0.00 0.00 2.74
723 888 4.602340 ATCGTAACTGAAGTCCAACTGT 57.398 40.909 0.00 0.00 0.00 3.55
724 889 4.988540 TGAATCGTAACTGAAGTCCAACTG 59.011 41.667 0.00 0.00 0.00 3.16
725 890 5.209818 TGAATCGTAACTGAAGTCCAACT 57.790 39.130 0.00 0.00 0.00 3.16
726 891 6.481954 AATGAATCGTAACTGAAGTCCAAC 57.518 37.500 0.00 0.00 0.00 3.77
727 892 6.128661 CGAAATGAATCGTAACTGAAGTCCAA 60.129 38.462 0.00 0.00 38.01 3.53
728 893 5.347635 CGAAATGAATCGTAACTGAAGTCCA 59.652 40.000 0.00 0.00 38.01 4.02
729 894 5.575606 TCGAAATGAATCGTAACTGAAGTCC 59.424 40.000 0.00 0.00 43.19 3.85
730 895 6.627690 TCGAAATGAATCGTAACTGAAGTC 57.372 37.500 0.00 0.00 43.19 3.01
731 896 6.401153 GCTTCGAAATGAATCGTAACTGAAGT 60.401 38.462 0.00 0.00 43.19 3.01
732 897 5.954349 GCTTCGAAATGAATCGTAACTGAAG 59.046 40.000 0.00 0.00 43.19 3.02
733 898 5.637810 AGCTTCGAAATGAATCGTAACTGAA 59.362 36.000 0.00 0.00 43.19 3.02
734 899 5.168569 AGCTTCGAAATGAATCGTAACTGA 58.831 37.500 0.00 0.00 43.19 3.41
735 900 5.456192 AGCTTCGAAATGAATCGTAACTG 57.544 39.130 0.00 0.00 43.19 3.16
736 901 5.869888 AGAAGCTTCGAAATGAATCGTAACT 59.130 36.000 20.43 0.00 43.19 2.24
737 902 6.095947 AGAAGCTTCGAAATGAATCGTAAC 57.904 37.500 20.43 0.00 43.19 2.50
738 903 6.453791 CGAAGAAGCTTCGAAATGAATCGTAA 60.454 38.462 21.19 0.00 43.97 3.18
739 904 5.004440 CGAAGAAGCTTCGAAATGAATCGTA 59.996 40.000 21.19 0.00 43.97 3.43
740 905 4.201628 CGAAGAAGCTTCGAAATGAATCGT 60.202 41.667 21.19 0.00 43.97 3.73
741 906 4.201628 ACGAAGAAGCTTCGAAATGAATCG 60.202 41.667 29.32 19.59 43.97 3.34
742 907 5.209944 ACGAAGAAGCTTCGAAATGAATC 57.790 39.130 29.32 8.97 43.97 2.52
743 908 4.201628 CGACGAAGAAGCTTCGAAATGAAT 60.202 41.667 29.32 10.53 43.97 2.57
744 909 3.121279 CGACGAAGAAGCTTCGAAATGAA 59.879 43.478 29.32 0.00 43.97 2.57
745 910 2.661675 CGACGAAGAAGCTTCGAAATGA 59.338 45.455 29.32 0.00 43.97 2.57
746 911 2.781304 GCGACGAAGAAGCTTCGAAATG 60.781 50.000 29.32 18.02 43.97 2.32
747 912 1.390463 GCGACGAAGAAGCTTCGAAAT 59.610 47.619 29.32 12.43 43.97 2.17
748 913 0.782384 GCGACGAAGAAGCTTCGAAA 59.218 50.000 29.32 0.00 43.97 3.46
749 914 0.318360 TGCGACGAAGAAGCTTCGAA 60.318 50.000 29.32 13.18 43.97 3.71
750 915 0.318360 TTGCGACGAAGAAGCTTCGA 60.318 50.000 29.32 9.87 43.97 3.71
751 916 0.716108 ATTGCGACGAAGAAGCTTCG 59.284 50.000 23.26 23.26 46.36 3.79
752 917 1.266598 CGATTGCGACGAAGAAGCTTC 60.267 52.381 19.11 19.11 40.82 3.86
753 918 0.716108 CGATTGCGACGAAGAAGCTT 59.284 50.000 0.00 0.00 40.82 3.74
754 919 0.109272 TCGATTGCGACGAAGAAGCT 60.109 50.000 0.00 0.00 42.51 3.74
755 920 2.359792 TCGATTGCGACGAAGAAGC 58.640 52.632 0.00 0.00 42.51 3.86
764 929 5.352846 TCTTATTTCCAATGTTCGATTGCGA 59.647 36.000 0.00 0.00 46.33 5.10
765 930 5.452302 GTCTTATTTCCAATGTTCGATTGCG 59.548 40.000 0.00 0.00 39.35 4.85
766 931 5.452302 CGTCTTATTTCCAATGTTCGATTGC 59.548 40.000 0.00 0.00 0.00 3.56
767 932 5.965334 CCGTCTTATTTCCAATGTTCGATTG 59.035 40.000 0.00 0.00 0.00 2.67
768 933 5.878116 TCCGTCTTATTTCCAATGTTCGATT 59.122 36.000 0.00 0.00 0.00 3.34
769 934 5.424757 TCCGTCTTATTTCCAATGTTCGAT 58.575 37.500 0.00 0.00 0.00 3.59
770 935 4.823157 TCCGTCTTATTTCCAATGTTCGA 58.177 39.130 0.00 0.00 0.00 3.71
771 936 4.494199 GCTCCGTCTTATTTCCAATGTTCG 60.494 45.833 0.00 0.00 0.00 3.95
772 937 4.636206 AGCTCCGTCTTATTTCCAATGTTC 59.364 41.667 0.00 0.00 0.00 3.18
773 938 4.589908 AGCTCCGTCTTATTTCCAATGTT 58.410 39.130 0.00 0.00 0.00 2.71
774 939 4.222124 AGCTCCGTCTTATTTCCAATGT 57.778 40.909 0.00 0.00 0.00 2.71
775 940 5.409826 GGATAGCTCCGTCTTATTTCCAATG 59.590 44.000 0.00 0.00 0.00 2.82
776 941 5.071788 TGGATAGCTCCGTCTTATTTCCAAT 59.928 40.000 0.00 0.00 45.37 3.16
777 942 4.407621 TGGATAGCTCCGTCTTATTTCCAA 59.592 41.667 0.00 0.00 45.37 3.53
778 943 3.964688 TGGATAGCTCCGTCTTATTTCCA 59.035 43.478 0.00 0.00 45.37 3.53
779 944 4.602340 TGGATAGCTCCGTCTTATTTCC 57.398 45.455 0.00 0.00 45.37 3.13
780 945 6.706270 TGATTTGGATAGCTCCGTCTTATTTC 59.294 38.462 0.00 0.00 45.37 2.17
781 946 6.591935 TGATTTGGATAGCTCCGTCTTATTT 58.408 36.000 0.00 0.00 45.37 1.40
782 947 6.042093 TCTGATTTGGATAGCTCCGTCTTATT 59.958 38.462 0.00 0.00 45.37 1.40
783 948 5.540337 TCTGATTTGGATAGCTCCGTCTTAT 59.460 40.000 0.00 0.00 45.37 1.73
784 949 4.893524 TCTGATTTGGATAGCTCCGTCTTA 59.106 41.667 0.00 0.00 45.37 2.10
785 950 3.706594 TCTGATTTGGATAGCTCCGTCTT 59.293 43.478 0.00 0.00 45.37 3.01
786 951 3.068873 GTCTGATTTGGATAGCTCCGTCT 59.931 47.826 0.00 0.00 45.37 4.18
787 952 3.068873 AGTCTGATTTGGATAGCTCCGTC 59.931 47.826 0.00 0.00 45.37 4.79
788 953 3.034635 AGTCTGATTTGGATAGCTCCGT 58.965 45.455 0.00 0.00 45.37 4.69
789 954 3.553922 GGAGTCTGATTTGGATAGCTCCG 60.554 52.174 0.00 0.00 45.37 4.63
790 955 3.389329 TGGAGTCTGATTTGGATAGCTCC 59.611 47.826 0.00 0.00 42.45 4.70
791 956 4.100808 AGTGGAGTCTGATTTGGATAGCTC 59.899 45.833 0.00 0.00 0.00 4.09
792 957 4.036518 AGTGGAGTCTGATTTGGATAGCT 58.963 43.478 0.00 0.00 0.00 3.32
793 958 4.376146 GAGTGGAGTCTGATTTGGATAGC 58.624 47.826 0.00 0.00 0.00 2.97
794 959 4.339530 TCGAGTGGAGTCTGATTTGGATAG 59.660 45.833 0.00 0.00 0.00 2.08
795 960 4.098044 GTCGAGTGGAGTCTGATTTGGATA 59.902 45.833 0.00 0.00 0.00 2.59
796 961 3.099905 TCGAGTGGAGTCTGATTTGGAT 58.900 45.455 0.00 0.00 0.00 3.41
797 962 2.231478 GTCGAGTGGAGTCTGATTTGGA 59.769 50.000 0.00 0.00 0.00 3.53
798 963 2.611518 GTCGAGTGGAGTCTGATTTGG 58.388 52.381 0.00 0.00 0.00 3.28
799 964 2.029020 TGGTCGAGTGGAGTCTGATTTG 60.029 50.000 0.00 0.00 0.00 2.32
800 965 2.248248 TGGTCGAGTGGAGTCTGATTT 58.752 47.619 0.00 0.00 0.00 2.17
801 966 1.924731 TGGTCGAGTGGAGTCTGATT 58.075 50.000 0.00 0.00 0.00 2.57
802 967 1.924731 TTGGTCGAGTGGAGTCTGAT 58.075 50.000 0.00 0.00 0.00 2.90
803 968 1.546029 CATTGGTCGAGTGGAGTCTGA 59.454 52.381 0.00 0.00 0.00 3.27
804 969 2.001812 CATTGGTCGAGTGGAGTCTG 57.998 55.000 0.00 0.00 0.00 3.51
805 970 0.247736 GCATTGGTCGAGTGGAGTCT 59.752 55.000 0.00 0.00 0.00 3.24
806 971 1.078759 CGCATTGGTCGAGTGGAGTC 61.079 60.000 0.00 0.00 0.00 3.36
807 972 1.079819 CGCATTGGTCGAGTGGAGT 60.080 57.895 0.00 0.00 0.00 3.85
808 973 2.456119 GCGCATTGGTCGAGTGGAG 61.456 63.158 0.30 0.00 0.00 3.86
809 974 2.434185 GCGCATTGGTCGAGTGGA 60.434 61.111 0.30 0.00 0.00 4.02
810 975 3.853330 CGCGCATTGGTCGAGTGG 61.853 66.667 8.75 0.00 0.00 4.00
811 976 3.853330 CCGCGCATTGGTCGAGTG 61.853 66.667 8.75 0.00 0.00 3.51
812 977 3.989698 CTCCGCGCATTGGTCGAGT 62.990 63.158 8.75 0.00 0.00 4.18
813 978 3.257561 CTCCGCGCATTGGTCGAG 61.258 66.667 8.75 0.00 0.00 4.04
814 979 3.699955 CTCTCCGCGCATTGGTCGA 62.700 63.158 8.75 1.64 0.00 4.20
815 980 3.257561 CTCTCCGCGCATTGGTCG 61.258 66.667 8.75 0.00 0.00 4.79
816 981 2.892425 CCTCTCCGCGCATTGGTC 60.892 66.667 8.75 0.00 0.00 4.02
817 982 3.706373 ACCTCTCCGCGCATTGGT 61.706 61.111 8.75 4.90 0.00 3.67
818 983 3.197790 CACCTCTCCGCGCATTGG 61.198 66.667 8.75 0.00 0.00 3.16
819 984 3.869272 GCACCTCTCCGCGCATTG 61.869 66.667 8.75 0.00 0.00 2.82
820 985 4.393155 TGCACCTCTCCGCGCATT 62.393 61.111 8.75 0.00 0.00 3.56
824 989 3.414700 GTTGTGCACCTCTCCGCG 61.415 66.667 15.69 0.00 0.00 6.46
825 990 3.050275 GGTTGTGCACCTCTCCGC 61.050 66.667 15.69 0.00 43.29 5.54
826 991 2.738521 CGGTTGTGCACCTCTCCG 60.739 66.667 15.69 17.70 44.69 4.63
827 992 1.823169 TACCGGTTGTGCACCTCTCC 61.823 60.000 15.04 10.16 44.69 3.71
828 993 0.249398 ATACCGGTTGTGCACCTCTC 59.751 55.000 15.04 1.79 44.69 3.20
829 994 0.036388 CATACCGGTTGTGCACCTCT 60.036 55.000 15.04 0.00 44.69 3.69
830 995 1.024579 CCATACCGGTTGTGCACCTC 61.025 60.000 15.04 7.11 44.69 3.85
831 996 1.002624 CCATACCGGTTGTGCACCT 60.003 57.895 15.04 0.00 44.69 4.00
832 997 0.393808 ATCCATACCGGTTGTGCACC 60.394 55.000 15.04 0.00 43.16 5.01
833 998 1.014352 GATCCATACCGGTTGTGCAC 58.986 55.000 15.04 10.75 35.57 4.57
834 999 0.461163 CGATCCATACCGGTTGTGCA 60.461 55.000 15.04 0.00 35.57 4.57
835 1000 1.157870 CCGATCCATACCGGTTGTGC 61.158 60.000 15.04 0.00 40.78 4.57
836 1001 0.462375 TCCGATCCATACCGGTTGTG 59.538 55.000 15.04 12.82 45.48 3.33
837 1002 1.343465 GATCCGATCCATACCGGTTGT 59.657 52.381 15.04 0.00 45.48 3.32
838 1003 2.080286 GATCCGATCCATACCGGTTG 57.920 55.000 15.04 11.19 45.48 3.77
858 1023 1.445582 GTAGCTTCGTGGGTGGACG 60.446 63.158 0.00 0.00 40.83 4.79
863 1028 2.335316 TTTGTTGTAGCTTCGTGGGT 57.665 45.000 0.00 0.00 0.00 4.51
864 1029 3.066203 AGTTTTTGTTGTAGCTTCGTGGG 59.934 43.478 0.00 0.00 0.00 4.61
869 1034 7.587757 CACATCTGTAGTTTTTGTTGTAGCTTC 59.412 37.037 0.00 0.00 0.00 3.86
879 1044 8.594687 CCTTTGTTTTCACATCTGTAGTTTTTG 58.405 33.333 0.00 0.00 31.06 2.44
885 1051 4.278170 TGCCCTTTGTTTTCACATCTGTAG 59.722 41.667 0.00 0.00 31.06 2.74
886 1052 4.211125 TGCCCTTTGTTTTCACATCTGTA 58.789 39.130 0.00 0.00 31.06 2.74
888 1054 3.731652 TGCCCTTTGTTTTCACATCTG 57.268 42.857 0.00 0.00 31.06 2.90
909 1075 2.827652 TCACGTGCTGTTTCACATGTA 58.172 42.857 11.67 0.00 36.80 2.29
913 1079 3.773860 AATTTCACGTGCTGTTTCACA 57.226 38.095 11.67 0.00 36.80 3.58
922 1088 8.261908 GCTGATGAATTTTATAATTTCACGTGC 58.738 33.333 11.67 11.39 34.16 5.34
925 1091 7.357532 GCGGCTGATGAATTTTATAATTTCACG 60.358 37.037 11.48 11.08 34.16 4.35
963 1129 0.172803 GCTCCGTGTACGAATGGTCT 59.827 55.000 5.91 0.00 43.02 3.85
1004 1173 2.498167 CTGGTTGACTTCCAGTTCCAG 58.502 52.381 4.06 0.00 45.09 3.86
1075 3962 2.266055 CTGCTGGAGTCGGGTTCC 59.734 66.667 0.00 0.00 35.20 3.62
1146 4033 0.981183 TTTATATGCGCCTCCGGGAT 59.019 50.000 4.18 0.00 34.32 3.85
1147 4034 0.759959 TTTTATATGCGCCTCCGGGA 59.240 50.000 4.18 0.00 34.32 5.14
1148 4035 0.872388 GTTTTATATGCGCCTCCGGG 59.128 55.000 4.18 0.00 34.32 5.73
1175 4066 2.916269 TGGTAAGGATGGATGAACACCA 59.084 45.455 0.00 0.00 41.83 4.17
1177 4068 4.757149 GCTATGGTAAGGATGGATGAACAC 59.243 45.833 0.00 0.00 0.00 3.32
1187 4078 7.757611 AGTACAGTAGTAGCTATGGTAAGGAT 58.242 38.462 0.00 0.00 0.00 3.24
1190 4081 8.156165 AGGTAGTACAGTAGTAGCTATGGTAAG 58.844 40.741 21.01 0.00 39.81 2.34
1191 4082 8.038862 AGGTAGTACAGTAGTAGCTATGGTAA 57.961 38.462 21.01 0.00 39.81 2.85
1192 4083 7.623999 AGGTAGTACAGTAGTAGCTATGGTA 57.376 40.000 21.01 0.00 39.81 3.25
1194 4085 6.430616 GGAAGGTAGTACAGTAGTAGCTATGG 59.569 46.154 22.15 0.00 40.47 2.74
1195 4086 7.225725 AGGAAGGTAGTACAGTAGTAGCTATG 58.774 42.308 22.15 0.00 40.47 2.23
1196 4087 7.391388 AGGAAGGTAGTACAGTAGTAGCTAT 57.609 40.000 22.15 14.51 40.47 2.97
1197 4088 6.183361 GGAGGAAGGTAGTACAGTAGTAGCTA 60.183 46.154 22.15 0.00 40.47 3.32
1198 4089 5.397786 GGAGGAAGGTAGTACAGTAGTAGCT 60.398 48.000 17.97 17.97 42.48 3.32
1199 4090 4.821260 GGAGGAAGGTAGTACAGTAGTAGC 59.179 50.000 14.51 14.51 33.42 3.58
1200 4091 5.999044 TGGAGGAAGGTAGTACAGTAGTAG 58.001 45.833 2.06 0.00 0.00 2.57
1201 4092 6.392911 TTGGAGGAAGGTAGTACAGTAGTA 57.607 41.667 2.06 0.00 0.00 1.82
1202 4093 4.942363 TGGAGGAAGGTAGTACAGTAGT 57.058 45.455 2.06 0.00 0.00 2.73
1203 4094 4.098196 GCTTGGAGGAAGGTAGTACAGTAG 59.902 50.000 2.06 0.00 31.56 2.57
1204 4095 4.021916 GCTTGGAGGAAGGTAGTACAGTA 58.978 47.826 2.06 0.00 31.56 2.74
1205 4096 2.832733 GCTTGGAGGAAGGTAGTACAGT 59.167 50.000 2.06 0.00 31.56 3.55
1206 4097 2.832129 TGCTTGGAGGAAGGTAGTACAG 59.168 50.000 2.06 0.00 31.56 2.74
1207 4098 2.565834 GTGCTTGGAGGAAGGTAGTACA 59.434 50.000 2.06 0.00 31.56 2.90
1208 4099 2.565834 TGTGCTTGGAGGAAGGTAGTAC 59.434 50.000 0.00 0.00 31.56 2.73
1224 4115 4.283212 AGAGAGAGCTTAAGAGTTTGTGCT 59.717 41.667 6.67 0.00 0.00 4.40
1257 4171 0.037697 AGTTGTACCGCTTGCGATCA 60.038 50.000 16.99 9.17 0.00 2.92
1273 4187 2.029844 GCGAGCTGCCTTTCGAGTT 61.030 57.895 13.06 0.00 39.06 3.01
1274 4188 2.433318 GCGAGCTGCCTTTCGAGT 60.433 61.111 13.06 0.00 39.06 4.18
1383 4299 0.321919 GCCTGTGGAGATCAGCAACA 60.322 55.000 0.00 0.00 0.00 3.33
1394 4310 2.725312 GCTGATCCTCGCCTGTGGA 61.725 63.158 0.00 0.00 41.71 4.02
1486 4402 2.031919 ACGTTGAGCGCCATGGAA 59.968 55.556 18.40 0.00 46.11 3.53
1525 4441 1.079405 TCGTCGACCCATGGAAAGC 60.079 57.895 15.22 0.00 0.00 3.51
1537 4453 1.587043 CCTGGCTTCTCTGTCGTCGA 61.587 60.000 0.00 0.00 0.00 4.20
1582 4498 2.157085 GCGTCTGCAAACCAACTACTAC 59.843 50.000 0.00 0.00 42.15 2.73
1597 4513 2.482664 ACTGGAAGAGCATATGCGTCTG 60.483 50.000 21.57 16.85 41.82 3.51
1598 4514 1.759445 ACTGGAAGAGCATATGCGTCT 59.241 47.619 21.57 19.66 41.82 4.18
1599 4515 2.231215 ACTGGAAGAGCATATGCGTC 57.769 50.000 21.57 18.51 41.82 5.19
1600 4516 2.698855 AACTGGAAGAGCATATGCGT 57.301 45.000 21.57 10.75 41.82 5.24
1601 4517 3.242870 GGAAAACTGGAAGAGCATATGCG 60.243 47.826 21.57 8.38 41.82 4.73
1602 4518 3.950395 AGGAAAACTGGAAGAGCATATGC 59.050 43.478 20.36 20.36 38.43 3.14
1603 4519 6.521151 AAAGGAAAACTGGAAGAGCATATG 57.479 37.500 0.00 0.00 37.43 1.78
1604 4520 6.721208 TCAAAAGGAAAACTGGAAGAGCATAT 59.279 34.615 0.00 0.00 37.43 1.78
1605 4521 6.068010 TCAAAAGGAAAACTGGAAGAGCATA 58.932 36.000 0.00 0.00 37.43 3.14
1606 4522 4.895297 TCAAAAGGAAAACTGGAAGAGCAT 59.105 37.500 0.00 0.00 37.43 3.79
1607 4523 4.277476 TCAAAAGGAAAACTGGAAGAGCA 58.723 39.130 0.00 0.00 37.43 4.26
1608 4524 4.918810 TCAAAAGGAAAACTGGAAGAGC 57.081 40.909 0.00 0.00 37.43 4.09
1609 4525 6.294397 CCAGATCAAAAGGAAAACTGGAAGAG 60.294 42.308 0.00 0.00 42.57 2.85
1610 4526 5.536161 CCAGATCAAAAGGAAAACTGGAAGA 59.464 40.000 0.00 0.00 42.57 2.87
1611 4527 5.776744 CCAGATCAAAAGGAAAACTGGAAG 58.223 41.667 0.00 0.00 42.57 3.46
1612 4528 4.039124 GCCAGATCAAAAGGAAAACTGGAA 59.961 41.667 13.37 0.00 42.57 3.53
1613 4529 3.573967 GCCAGATCAAAAGGAAAACTGGA 59.426 43.478 13.37 0.00 42.57 3.86
1614 4530 3.575687 AGCCAGATCAAAAGGAAAACTGG 59.424 43.478 0.00 0.00 42.70 4.00
1615 4531 4.038402 ACAGCCAGATCAAAAGGAAAACTG 59.962 41.667 0.00 0.00 0.00 3.16
1616 4532 4.218312 ACAGCCAGATCAAAAGGAAAACT 58.782 39.130 0.00 0.00 0.00 2.66
1617 4533 4.590850 ACAGCCAGATCAAAAGGAAAAC 57.409 40.909 0.00 0.00 0.00 2.43
1618 4534 4.648762 TCAACAGCCAGATCAAAAGGAAAA 59.351 37.500 0.00 0.00 0.00 2.29
1621 4537 3.149196 GTCAACAGCCAGATCAAAAGGA 58.851 45.455 0.00 0.00 0.00 3.36
1625 4541 3.490439 TCAGTCAACAGCCAGATCAAA 57.510 42.857 0.00 0.00 0.00 2.69
1639 4555 3.996363 CGTCAATCATTCAGGTTCAGTCA 59.004 43.478 0.00 0.00 0.00 3.41
1640 4556 3.372206 CCGTCAATCATTCAGGTTCAGTC 59.628 47.826 0.00 0.00 0.00 3.51
1641 4557 3.244561 ACCGTCAATCATTCAGGTTCAGT 60.245 43.478 0.00 0.00 0.00 3.41
1657 4573 3.018149 GGGCAAAAATATACCACCGTCA 58.982 45.455 0.00 0.00 0.00 4.35
1658 4574 2.032426 CGGGCAAAAATATACCACCGTC 59.968 50.000 0.00 0.00 35.67 4.79
1659 4575 2.018515 CGGGCAAAAATATACCACCGT 58.981 47.619 0.00 0.00 35.67 4.83
1660 4576 1.335496 CCGGGCAAAAATATACCACCG 59.665 52.381 0.00 0.00 39.76 4.94
1661 4577 1.684450 CCCGGGCAAAAATATACCACC 59.316 52.381 8.08 0.00 0.00 4.61
1662 4578 1.684450 CCCCGGGCAAAAATATACCAC 59.316 52.381 17.73 0.00 0.00 4.16
1684 4622 3.412386 AGGAGCGAGCAACAATTTAACT 58.588 40.909 0.00 0.00 0.00 2.24
1709 4647 9.408069 GCCTATTATACATGTACACACTCTAAC 57.592 37.037 7.96 0.00 0.00 2.34
1713 4651 8.141909 TCTTGCCTATTATACATGTACACACTC 58.858 37.037 7.96 0.00 0.00 3.51
1716 4654 9.845740 AAATCTTGCCTATTATACATGTACACA 57.154 29.630 7.96 0.00 0.00 3.72
1734 4672 8.619546 AGCACTAATCTCATCTAAAAATCTTGC 58.380 33.333 0.00 0.00 0.00 4.01
1754 4704 7.182817 AGGTCACAAGTAATCATAAGCACTA 57.817 36.000 0.00 0.00 0.00 2.74
1782 4734 3.070878 TCAGTGTACAGTCCAATTGCTGA 59.929 43.478 16.95 10.22 36.62 4.26
1940 4901 4.632327 ATAAGAGGGGCTATCTTTGAGC 57.368 45.455 9.44 0.00 38.05 4.26
1952 4913 5.403512 TCCATTAGTGAGGTATAAGAGGGG 58.596 45.833 0.00 0.00 0.00 4.79
2004 4966 4.354893 AGTTTGGTACCGTTGGATGTAA 57.645 40.909 7.57 0.00 0.00 2.41
2005 4967 5.680594 ATAGTTTGGTACCGTTGGATGTA 57.319 39.130 7.57 0.00 0.00 2.29
2056 5100 1.921346 TACATTCCGCACCCTGGGT 60.921 57.895 14.05 14.05 35.62 4.51
2148 5192 1.804372 CGAGAGAATTTGGGGAGAGCG 60.804 57.143 0.00 0.00 0.00 5.03
2156 5200 6.525628 CACATTGAATTGACGAGAGAATTTGG 59.474 38.462 0.00 0.00 0.00 3.28
2224 5270 3.831911 ACCATCCGTGAAAACATGGAAAT 59.168 39.130 13.86 2.15 42.85 2.17
2253 5299 2.866460 GCTGCTTCTAGGACGTGTTCAA 60.866 50.000 0.00 0.00 0.00 2.69
2268 5314 1.660560 CTAGCATTTGGGCGCTGCTT 61.661 55.000 23.64 10.16 43.44 3.91
2353 5399 9.552695 ACCTAGAATATATGTGATCTCCAATCA 57.447 33.333 0.00 0.00 0.00 2.57
2374 5420 2.294979 GGCCCATTTTCGGTAACCTAG 58.705 52.381 0.00 0.00 0.00 3.02
2428 5474 4.384846 TCAATCAAGTTAGTCTTCGCGTTC 59.615 41.667 5.77 0.00 33.63 3.95
2478 5527 3.701664 ACCCCAGCAAGATTCCTAAAAG 58.298 45.455 0.00 0.00 0.00 2.27
2519 5569 0.992802 GAGCACTTCTTCGGCTTACG 59.007 55.000 0.00 0.00 46.11 3.18
2528 5578 3.217626 CTTGAGGTTTGGAGCACTTCTT 58.782 45.455 0.00 0.00 0.00 2.52
2571 5624 6.627087 TGAAGATGGTTTCCTCTAGTGAAT 57.373 37.500 0.00 0.00 0.00 2.57
2581 5634 8.511604 TGAGAAGATAATTGAAGATGGTTTCC 57.488 34.615 0.00 0.00 0.00 3.13
2667 5720 2.507484 TGACTTCCAATGGCAAGACAG 58.493 47.619 15.11 0.00 0.00 3.51
2698 5751 7.117236 CCATGCATCTTATTATCCATTGTTTGC 59.883 37.037 0.00 0.00 0.00 3.68
2774 5827 9.698309 CTCCTACTTATCAATGAAATGATACGT 57.302 33.333 10.14 10.14 43.26 3.57
2788 5841 9.871238 GTTGTAACAATTCTCTCCTACTTATCA 57.129 33.333 0.00 0.00 0.00 2.15
2789 5842 9.871238 TGTTGTAACAATTCTCTCCTACTTATC 57.129 33.333 0.00 0.00 35.67 1.75
2809 5862 3.120108 CCCCTCCCTCCTATTTGTTGTA 58.880 50.000 0.00 0.00 0.00 2.41
2814 5867 1.061346 TCTCCCCCTCCCTCCTATTTG 60.061 57.143 0.00 0.00 0.00 2.32
2834 5887 0.033601 TCTTGTTTGTGTGGTGCCCT 60.034 50.000 0.00 0.00 0.00 5.19
2862 5915 1.898154 GGGCTAGGCGAGTCTTCAA 59.102 57.895 10.58 0.00 0.00 2.69
2864 5917 1.664321 TTCGGGCTAGGCGAGTCTTC 61.664 60.000 10.58 0.00 0.00 2.87
2872 5925 0.748005 TGCTTGATTTCGGGCTAGGC 60.748 55.000 8.00 8.00 0.00 3.93
2878 5931 3.514645 CCTTTCATTGCTTGATTTCGGG 58.485 45.455 0.00 0.00 33.34 5.14
2884 5937 4.525487 TCTCTTTGCCTTTCATTGCTTGAT 59.475 37.500 0.00 0.00 33.34 2.57
2891 5944 3.168292 CCCCTTCTCTTTGCCTTTCATT 58.832 45.455 0.00 0.00 0.00 2.57
2901 5954 1.770324 CCCTGTGCCCCTTCTCTTT 59.230 57.895 0.00 0.00 0.00 2.52
2932 5985 3.645975 CCGTGTGTTGGTCGTGCC 61.646 66.667 0.00 0.00 37.90 5.01
2933 5986 2.174969 TTCCGTGTGTTGGTCGTGC 61.175 57.895 0.00 0.00 0.00 5.34
2936 5989 0.812412 AAGGTTCCGTGTGTTGGTCG 60.812 55.000 0.00 0.00 0.00 4.79
2944 5997 1.299620 CGTGACGAAGGTTCCGTGT 60.300 57.895 0.00 0.00 40.67 4.49
2963 6016 1.691976 TCTATTATGGAGTGGTGGCCG 59.308 52.381 0.00 0.00 0.00 6.13
2978 6031 4.141779 GGGGGTACGTTGATTCAGTCTATT 60.142 45.833 0.00 0.00 0.00 1.73
2980 6033 2.762327 GGGGGTACGTTGATTCAGTCTA 59.238 50.000 0.00 0.00 0.00 2.59
2985 6038 0.325602 GGTGGGGGTACGTTGATTCA 59.674 55.000 0.00 0.00 0.00 2.57
2986 6039 0.616891 AGGTGGGGGTACGTTGATTC 59.383 55.000 0.00 0.00 0.00 2.52
2997 6050 0.958822 GCGCATAATTAAGGTGGGGG 59.041 55.000 0.30 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.