Multiple sequence alignment - TraesCS7B01G084500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G084500 chr7B 100.000 3619 0 0 1 3619 95916395 95920013 0.000000e+00 6684.0
1 TraesCS7B01G084500 chr7B 100.000 30 0 0 1 30 483040490 483040519 5.050000e-04 56.5
2 TraesCS7B01G084500 chr7D 94.297 2788 100 23 37 2791 134100532 134103293 0.000000e+00 4213.0
3 TraesCS7B01G084500 chr7D 88.038 209 16 4 2924 3123 134106768 134106976 4.670000e-59 239.0
4 TraesCS7B01G084500 chr7A 91.734 2831 112 35 37 2791 133044980 133047764 0.000000e+00 3819.0
5 TraesCS7B01G084500 chr7A 89.954 219 22 0 3177 3395 133050246 133050464 2.130000e-72 283.0
6 TraesCS7B01G084500 chr7A 80.000 105 19 2 2216 2319 681789398 681789501 3.870000e-10 76.8
7 TraesCS7B01G084500 chr5D 94.203 414 23 1 2081 2494 126372581 126372169 6.590000e-177 630.0
8 TraesCS7B01G084500 chr2D 88.060 134 15 1 1069 1202 315972868 315972736 1.350000e-34 158.0
9 TraesCS7B01G084500 chr5B 92.500 40 3 0 1 40 313830538 313830499 1.400000e-04 58.4
10 TraesCS7B01G084500 chr4B 96.970 33 1 0 1 33 146444389 146444421 5.050000e-04 56.5
11 TraesCS7B01G084500 chr4B 96.774 31 1 0 3 33 600634914 600634944 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G084500 chr7B 95916395 95920013 3618 False 6684 6684 100.0000 1 3619 1 chr7B.!!$F1 3618
1 TraesCS7B01G084500 chr7D 134100532 134106976 6444 False 2226 4213 91.1675 37 3123 2 chr7D.!!$F1 3086
2 TraesCS7B01G084500 chr7A 133044980 133050464 5484 False 2051 3819 90.8440 37 3395 2 chr7A.!!$F2 3358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
684 739 0.602638 CAGCTTTGCCTGGTCACGTA 60.603 55.0 0.0 0.0 0.0 3.57 F
685 740 0.602905 AGCTTTGCCTGGTCACGTAC 60.603 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 1704 0.586802 GCCAAGAAACAGACACGGAC 59.413 55.000 0.00 0.00 0.00 4.79 R
2632 2721 1.200716 CAACAGTGGGACATGACATGC 59.799 52.381 15.49 8.15 44.52 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.447734 TCCGAACACCCCCTAGTC 57.552 61.111 0.00 0.00 0.00 2.59
18 19 1.305549 TCCGAACACCCCCTAGTCC 60.306 63.158 0.00 0.00 0.00 3.85
19 20 1.611261 CCGAACACCCCCTAGTCCA 60.611 63.158 0.00 0.00 0.00 4.02
20 21 1.614241 CCGAACACCCCCTAGTCCAG 61.614 65.000 0.00 0.00 0.00 3.86
21 22 1.614241 CGAACACCCCCTAGTCCAGG 61.614 65.000 0.00 0.00 45.07 4.45
33 34 4.237976 CTAGTCCAGGACTACCTCAAGA 57.762 50.000 23.68 4.84 45.94 3.02
34 35 3.544698 AGTCCAGGACTACCTCAAGAA 57.455 47.619 21.66 0.00 45.94 2.52
35 36 3.858135 AGTCCAGGACTACCTCAAGAAA 58.142 45.455 21.66 0.00 45.94 2.52
252 253 1.290324 CCCTATCGACCCGATGCTG 59.710 63.158 11.58 2.95 46.43 4.41
295 296 8.192774 GCTTCAATCAAGTCATATGAAAATGGA 58.807 33.333 7.07 0.28 34.13 3.41
422 423 3.942439 GGGCTACCTGGATCCGGC 61.942 72.222 15.84 8.32 0.00 6.13
516 527 3.001902 GCGGATCACGTGTCCAGGA 62.002 63.158 26.19 6.44 46.52 3.86
560 590 5.629435 GTGTAGCTGTATTGGTTTTGCTTTC 59.371 40.000 0.00 0.00 32.72 2.62
572 608 6.334202 TGGTTTTGCTTTCGTTTTTGTATCT 58.666 32.000 0.00 0.00 0.00 1.98
578 614 5.974751 TGCTTTCGTTTTTGTATCTGTTTCC 59.025 36.000 0.00 0.00 0.00 3.13
597 641 7.179966 TGTTTCCCTCTCAGAGTATACTTGTA 58.820 38.462 6.88 0.00 0.00 2.41
648 698 1.680651 CAGCGAGGAGGGTGAGACT 60.681 63.158 0.00 0.00 37.61 3.24
682 737 2.620112 CCAGCTTTGCCTGGTCACG 61.620 63.158 0.00 0.00 45.87 4.35
683 738 1.893808 CAGCTTTGCCTGGTCACGT 60.894 57.895 0.00 0.00 0.00 4.49
684 739 0.602638 CAGCTTTGCCTGGTCACGTA 60.603 55.000 0.00 0.00 0.00 3.57
685 740 0.602905 AGCTTTGCCTGGTCACGTAC 60.603 55.000 0.00 0.00 0.00 3.67
692 747 1.372499 CTGGTCACGTACGTGTGGG 60.372 63.158 38.70 25.45 45.55 4.61
912 977 5.071250 TGGAGGATGTGTTTGTACTTGTAGT 59.929 40.000 0.00 0.00 0.00 2.73
1083 1151 2.100631 CCACATCAACCCGACGCTC 61.101 63.158 0.00 0.00 0.00 5.03
1215 1283 1.443363 GTTCCGGTTCGAGTCCGTC 60.443 63.158 22.76 12.95 45.63 4.79
1269 1337 1.734477 CGACAAGACGGTGAGGCTG 60.734 63.158 0.00 0.00 37.06 4.85
1284 1352 3.181967 CTGTACCTGTCGCTGCGC 61.182 66.667 18.65 13.09 0.00 6.09
1371 1439 3.606662 ACCTGCGTCGTGCTCAGT 61.607 61.111 0.00 0.00 46.63 3.41
1428 1496 4.147322 GGCGTGCCGTCATTCGTG 62.147 66.667 0.00 0.00 37.94 4.35
1488 1556 2.974148 CTGCGCCAGCTCACACAA 60.974 61.111 4.18 0.00 45.42 3.33
1520 1595 3.252458 ACGCCACTCAAAGGTATTTCAAC 59.748 43.478 0.00 0.00 0.00 3.18
1521 1596 3.666902 CGCCACTCAAAGGTATTTCAACG 60.667 47.826 0.00 0.00 0.00 4.10
1546 1631 2.594962 CGCGCTCGTCCAAGTTTGT 61.595 57.895 5.56 0.00 0.00 2.83
1590 1675 4.064491 GCTGCACGTGTCGCACTC 62.064 66.667 18.38 0.00 35.08 3.51
1591 1676 2.658268 CTGCACGTGTCGCACTCA 60.658 61.111 18.38 3.45 35.08 3.41
1613 1699 8.260114 ACTCATGTATATGGATCGATGCAAATA 58.740 33.333 23.87 12.81 34.97 1.40
1618 1704 9.101655 TGTATATGGATCGATGCAAATATTCAG 57.898 33.333 23.87 0.00 0.00 3.02
1901 1987 2.124860 GTGTACACCATCGGGCCC 60.125 66.667 13.57 13.57 37.90 5.80
2475 2561 4.212913 GCGAGGAGATGAGGCGCA 62.213 66.667 10.83 0.00 46.19 6.09
2632 2721 2.660552 GTGACGTCACACACCGGG 60.661 66.667 37.16 0.00 45.75 5.73
2633 2722 4.595538 TGACGTCACACACCGGGC 62.596 66.667 15.76 0.00 0.00 6.13
2634 2723 4.595538 GACGTCACACACCGGGCA 62.596 66.667 11.55 0.00 0.00 5.36
2677 2766 6.589139 GCGTAATGTACTCTTAGACTTTTGGT 59.411 38.462 0.00 0.00 0.00 3.67
2678 2767 7.411588 GCGTAATGTACTCTTAGACTTTTGGTG 60.412 40.741 0.00 0.00 0.00 4.17
2679 2768 6.803154 AATGTACTCTTAGACTTTTGGTGC 57.197 37.500 0.00 0.00 0.00 5.01
2680 2769 5.284861 TGTACTCTTAGACTTTTGGTGCA 57.715 39.130 0.00 0.00 0.00 4.57
2681 2770 5.054477 TGTACTCTTAGACTTTTGGTGCAC 58.946 41.667 8.80 8.80 0.00 4.57
2682 2771 3.477530 ACTCTTAGACTTTTGGTGCACC 58.522 45.455 29.67 29.67 0.00 5.01
2683 2772 3.118038 ACTCTTAGACTTTTGGTGCACCA 60.118 43.478 34.74 34.74 45.94 4.17
2684 2773 4.074970 CTCTTAGACTTTTGGTGCACCAT 58.925 43.478 37.97 24.18 46.97 3.55
2685 2774 5.221843 ACTCTTAGACTTTTGGTGCACCATA 60.222 40.000 37.97 30.42 46.97 2.74
2686 2775 5.815581 TCTTAGACTTTTGGTGCACCATAT 58.184 37.500 37.97 22.85 46.97 1.78
2687 2776 5.880332 TCTTAGACTTTTGGTGCACCATATC 59.120 40.000 37.97 28.61 46.97 1.63
2688 2777 4.032960 AGACTTTTGGTGCACCATATCA 57.967 40.909 37.97 21.55 46.97 2.15
2699 2788 5.468592 GTGCACCATATCATGTTGTTTTCA 58.531 37.500 5.22 0.00 0.00 2.69
2702 2791 5.574055 GCACCATATCATGTTGTTTTCACTG 59.426 40.000 0.00 0.00 0.00 3.66
2709 2798 5.375773 TCATGTTGTTTTCACTGGATCTCA 58.624 37.500 0.00 0.00 0.00 3.27
2719 2808 4.635223 TCACTGGATCTCAAAGTTGTCAG 58.365 43.478 0.00 0.00 0.00 3.51
2767 2856 0.096454 GCACGCCGATGGTTTCTTAC 59.904 55.000 0.00 0.00 0.00 2.34
2768 2857 1.434555 CACGCCGATGGTTTCTTACA 58.565 50.000 0.00 0.00 0.00 2.41
2769 2858 1.127951 CACGCCGATGGTTTCTTACAC 59.872 52.381 0.00 0.00 0.00 2.90
2770 2859 0.368907 CGCCGATGGTTTCTTACACG 59.631 55.000 0.00 0.00 0.00 4.49
2787 2876 2.789917 GCACGCATGGCTCTCTTG 59.210 61.111 0.00 0.00 0.00 3.02
2791 2880 1.129998 CACGCATGGCTCTCTTGAAAG 59.870 52.381 0.00 0.00 0.00 2.62
2793 2882 1.129998 CGCATGGCTCTCTTGAAAGTG 59.870 52.381 0.00 0.00 0.00 3.16
2795 2884 3.338249 GCATGGCTCTCTTGAAAGTGTA 58.662 45.455 0.00 0.00 0.00 2.90
2797 2886 3.402628 TGGCTCTCTTGAAAGTGTACC 57.597 47.619 0.00 0.00 0.00 3.34
2798 2887 2.972713 TGGCTCTCTTGAAAGTGTACCT 59.027 45.455 0.00 0.00 0.00 3.08
2800 2889 4.220821 TGGCTCTCTTGAAAGTGTACCTAG 59.779 45.833 0.00 0.00 0.00 3.02
2801 2890 4.221041 GGCTCTCTTGAAAGTGTACCTAGT 59.779 45.833 0.00 0.00 0.00 2.57
2802 2891 5.279556 GGCTCTCTTGAAAGTGTACCTAGTT 60.280 44.000 0.00 0.00 0.00 2.24
2804 2893 6.366604 GCTCTCTTGAAAGTGTACCTAGTTTC 59.633 42.308 6.57 6.57 39.38 2.78
2806 2895 6.263842 TCTCTTGAAAGTGTACCTAGTTTCGA 59.736 38.462 8.28 6.29 40.97 3.71
2809 2898 6.882610 TGAAAGTGTACCTAGTTTCGACTA 57.117 37.500 8.28 0.00 40.97 2.59
2812 2901 7.649306 TGAAAGTGTACCTAGTTTCGACTAAAC 59.351 37.037 8.28 0.00 46.61 2.01
2822 2911 5.934935 GTTTCGACTAAACCCAGAAATGA 57.065 39.130 0.00 0.00 41.44 2.57
2823 2912 6.496338 GTTTCGACTAAACCCAGAAATGAT 57.504 37.500 0.00 0.00 41.44 2.45
2824 2913 6.543736 GTTTCGACTAAACCCAGAAATGATC 58.456 40.000 0.00 0.00 41.44 2.92
2825 2914 4.766375 TCGACTAAACCCAGAAATGATCC 58.234 43.478 0.00 0.00 0.00 3.36
2827 2916 4.679639 CGACTAAACCCAGAAATGATCCGA 60.680 45.833 0.00 0.00 0.00 4.55
2835 6643 4.265073 CCAGAAATGATCCGAGAAAACCT 58.735 43.478 0.00 0.00 0.00 3.50
2836 6644 4.095483 CCAGAAATGATCCGAGAAAACCTG 59.905 45.833 0.00 0.00 0.00 4.00
2850 6658 3.211288 CCTGGAGGTGACTAGGCG 58.789 66.667 0.00 0.00 44.43 5.52
2851 6659 1.379977 CCTGGAGGTGACTAGGCGA 60.380 63.158 0.00 0.00 44.43 5.54
2852 6660 1.668101 CCTGGAGGTGACTAGGCGAC 61.668 65.000 0.00 0.00 44.43 5.19
2853 6661 0.965866 CTGGAGGTGACTAGGCGACA 60.966 60.000 0.00 0.00 44.43 4.35
2854 6662 1.248785 TGGAGGTGACTAGGCGACAC 61.249 60.000 0.00 0.00 44.43 3.67
2855 6663 1.136984 GAGGTGACTAGGCGACACG 59.863 63.158 0.00 0.00 44.43 4.49
2856 6664 1.303074 AGGTGACTAGGCGACACGA 60.303 57.895 0.00 0.00 40.61 4.35
2857 6665 1.136984 GGTGACTAGGCGACACGAG 59.863 63.158 0.00 0.00 38.85 4.18
2858 6666 1.514443 GTGACTAGGCGACACGAGC 60.514 63.158 0.00 0.00 0.00 5.03
2860 6668 1.313091 TGACTAGGCGACACGAGCAT 61.313 55.000 0.00 0.00 36.08 3.79
2872 6684 1.369625 ACGAGCATTCCGTGATTTCC 58.630 50.000 0.00 0.00 38.97 3.13
2876 6688 3.119849 CGAGCATTCCGTGATTTCCTTTT 60.120 43.478 0.00 0.00 0.00 2.27
2882 6694 2.537639 CGTGATTTCCTTTTACGGGC 57.462 50.000 0.00 0.00 0.00 6.13
2883 6695 1.807742 CGTGATTTCCTTTTACGGGCA 59.192 47.619 0.00 0.00 0.00 5.36
2884 6696 2.226912 CGTGATTTCCTTTTACGGGCAA 59.773 45.455 0.00 0.00 0.00 4.52
2889 6701 4.448537 TTTCCTTTTACGGGCAATCATG 57.551 40.909 0.00 0.00 0.00 3.07
2891 6703 3.013921 TCCTTTTACGGGCAATCATGTC 58.986 45.455 0.00 0.00 0.00 3.06
2896 6708 2.460275 CGGGCAATCATGTCGCGAA 61.460 57.895 12.06 1.13 39.50 4.70
2904 6716 4.326205 CAATCATGTCGCGAAACTGTTAG 58.674 43.478 12.06 0.00 0.00 2.34
2905 6717 3.021269 TCATGTCGCGAAACTGTTAGT 57.979 42.857 12.06 0.00 0.00 2.24
2906 6718 4.163458 TCATGTCGCGAAACTGTTAGTA 57.837 40.909 12.06 0.00 0.00 1.82
2907 6719 4.740268 TCATGTCGCGAAACTGTTAGTAT 58.260 39.130 12.06 0.00 0.00 2.12
2908 6720 4.796830 TCATGTCGCGAAACTGTTAGTATC 59.203 41.667 12.06 0.00 0.00 2.24
2909 6721 4.430137 TGTCGCGAAACTGTTAGTATCT 57.570 40.909 12.06 0.00 0.00 1.98
2910 6722 4.163552 TGTCGCGAAACTGTTAGTATCTG 58.836 43.478 12.06 0.00 0.00 2.90
2911 6723 3.546670 GTCGCGAAACTGTTAGTATCTGG 59.453 47.826 12.06 0.00 0.00 3.86
2913 6725 3.546670 CGCGAAACTGTTAGTATCTGGTC 59.453 47.826 0.00 0.00 0.00 4.02
2914 6726 4.491676 GCGAAACTGTTAGTATCTGGTCA 58.508 43.478 0.00 0.00 0.00 4.02
2919 6731 3.192844 ACTGTTAGTATCTGGTCACCACG 59.807 47.826 0.00 0.00 0.00 4.94
2920 6732 3.159472 TGTTAGTATCTGGTCACCACGT 58.841 45.455 0.00 0.00 0.00 4.49
2921 6733 3.192001 TGTTAGTATCTGGTCACCACGTC 59.808 47.826 0.00 0.00 0.00 4.34
2922 6734 1.919240 AGTATCTGGTCACCACGTCA 58.081 50.000 0.00 0.00 0.00 4.35
2938 7026 1.413382 GTCAGACGTGTGCTTGAGAG 58.587 55.000 8.02 0.00 0.00 3.20
2943 7031 0.595053 ACGTGTGCTTGAGAGTGACG 60.595 55.000 0.00 0.00 0.00 4.35
2964 7052 3.978217 CGTGTCAATAAACGTGGCAAAAT 59.022 39.130 0.00 0.00 31.16 1.82
2969 7057 6.151985 TGTCAATAAACGTGGCAAAATCCTAT 59.848 34.615 0.00 0.00 0.00 2.57
2970 7058 7.337184 TGTCAATAAACGTGGCAAAATCCTATA 59.663 33.333 0.00 0.00 0.00 1.31
2973 7066 9.019764 CAATAAACGTGGCAAAATCCTATAAAG 57.980 33.333 0.00 0.00 0.00 1.85
3002 7101 4.541973 TCCATGATCGGACCAATCATAG 57.458 45.455 7.61 1.06 40.92 2.23
3008 7107 1.051812 CGGACCAATCATAGGAGGCT 58.948 55.000 0.00 0.00 0.00 4.58
3014 7113 2.548920 CCAATCATAGGAGGCTCGAACC 60.549 54.545 8.69 0.00 0.00 3.62
3050 7153 0.677288 TCCAACACCTCACGACGAAT 59.323 50.000 0.00 0.00 0.00 3.34
3055 7158 1.335964 ACACCTCACGACGAATGACAG 60.336 52.381 0.00 0.00 0.00 3.51
3058 7161 1.618861 CTCACGACGAATGACAGGAC 58.381 55.000 0.00 0.00 0.00 3.85
3073 7176 2.294074 CAGGACCGTTTTTGACTTGGA 58.706 47.619 0.00 0.00 0.00 3.53
3076 7179 1.001706 GACCGTTTTTGACTTGGAGCC 60.002 52.381 0.00 0.00 0.00 4.70
3123 7226 2.550606 GCGAACCATTTACAACACCTCA 59.449 45.455 0.00 0.00 0.00 3.86
3125 7228 3.562141 CGAACCATTTACAACACCTCACA 59.438 43.478 0.00 0.00 0.00 3.58
3129 7232 3.058016 CCATTTACAACACCTCACAGCTG 60.058 47.826 13.48 13.48 0.00 4.24
3133 7270 1.417517 ACAACACCTCACAGCTGATGA 59.582 47.619 23.35 18.28 0.00 2.92
3141 7278 1.469703 TCACAGCTGATGATTTTGGCG 59.530 47.619 23.35 0.00 0.00 5.69
3146 7283 1.755179 CTGATGATTTTGGCGGGTCT 58.245 50.000 0.00 0.00 0.00 3.85
3154 7291 0.753479 TTTGGCGGGTCTGAAAGCAA 60.753 50.000 0.00 0.00 0.00 3.91
3160 7297 2.699954 CGGGTCTGAAAGCAACATACT 58.300 47.619 0.00 0.00 0.00 2.12
3167 7304 5.862323 GTCTGAAAGCAACATACTCGTTCTA 59.138 40.000 0.00 0.00 0.00 2.10
3170 7307 7.439955 TCTGAAAGCAACATACTCGTTCTAAAA 59.560 33.333 0.00 0.00 0.00 1.52
3198 7365 3.005684 TGTTTAACCGAAGCGAAGTCCTA 59.994 43.478 0.00 0.00 0.00 2.94
3200 7367 2.075979 AACCGAAGCGAAGTCCTAAC 57.924 50.000 0.00 0.00 0.00 2.34
3220 7387 1.657181 CGGCGGCGGAAAAATATGC 60.657 57.895 25.36 0.00 0.00 3.14
3227 7394 0.594796 CGGAAAAATATGCCGGCTGC 60.595 55.000 29.70 9.72 41.29 5.25
3289 7456 3.733960 GGGACGCTTTGGTTCGGC 61.734 66.667 0.00 0.00 0.00 5.54
3355 7522 2.426752 CGCGCAAGGAAAACGTGG 60.427 61.111 8.75 0.00 33.89 4.94
3386 7553 1.452651 CGCTGGCAAGGATGGTGAT 60.453 57.895 0.00 0.00 0.00 3.06
3390 7557 2.945440 GCTGGCAAGGATGGTGATAACA 60.945 50.000 0.00 0.00 0.00 2.41
3426 7593 7.450124 AAATGATGATTATGACATCTCAGGC 57.550 36.000 0.00 0.00 42.89 4.85
3427 7594 5.556006 TGATGATTATGACATCTCAGGCA 57.444 39.130 0.00 0.00 42.89 4.75
3428 7595 5.303165 TGATGATTATGACATCTCAGGCAC 58.697 41.667 0.00 0.00 42.89 5.01
3429 7596 4.077300 TGATTATGACATCTCAGGCACC 57.923 45.455 0.00 0.00 0.00 5.01
3430 7597 3.455543 TGATTATGACATCTCAGGCACCA 59.544 43.478 0.00 0.00 0.00 4.17
3431 7598 2.988010 TATGACATCTCAGGCACCAC 57.012 50.000 0.00 0.00 0.00 4.16
3432 7599 1.283347 ATGACATCTCAGGCACCACT 58.717 50.000 0.00 0.00 0.00 4.00
3433 7600 1.937191 TGACATCTCAGGCACCACTA 58.063 50.000 0.00 0.00 0.00 2.74
3434 7601 1.550524 TGACATCTCAGGCACCACTAC 59.449 52.381 0.00 0.00 0.00 2.73
3435 7602 1.550524 GACATCTCAGGCACCACTACA 59.449 52.381 0.00 0.00 0.00 2.74
3436 7603 1.276421 ACATCTCAGGCACCACTACAC 59.724 52.381 0.00 0.00 0.00 2.90
3437 7604 0.905357 ATCTCAGGCACCACTACACC 59.095 55.000 0.00 0.00 0.00 4.16
3438 7605 1.192146 TCTCAGGCACCACTACACCC 61.192 60.000 0.00 0.00 0.00 4.61
3439 7606 2.047274 CAGGCACCACTACACCCG 60.047 66.667 0.00 0.00 0.00 5.28
3440 7607 2.203728 AGGCACCACTACACCCGA 60.204 61.111 0.00 0.00 0.00 5.14
3441 7608 1.612442 AGGCACCACTACACCCGAT 60.612 57.895 0.00 0.00 0.00 4.18
3442 7609 1.153429 GGCACCACTACACCCGATC 60.153 63.158 0.00 0.00 0.00 3.69
3443 7610 1.518572 GCACCACTACACCCGATCG 60.519 63.158 8.51 8.51 0.00 3.69
3444 7611 1.518572 CACCACTACACCCGATCGC 60.519 63.158 10.32 0.00 0.00 4.58
3445 7612 1.681327 ACCACTACACCCGATCGCT 60.681 57.895 10.32 0.00 0.00 4.93
3446 7613 1.226974 CCACTACACCCGATCGCTG 60.227 63.158 10.32 9.48 0.00 5.18
3447 7614 1.511305 CACTACACCCGATCGCTGT 59.489 57.895 10.32 14.91 0.00 4.40
3448 7615 0.108804 CACTACACCCGATCGCTGTT 60.109 55.000 18.36 8.24 0.00 3.16
3449 7616 1.133598 CACTACACCCGATCGCTGTTA 59.866 52.381 18.36 8.78 0.00 2.41
3450 7617 2.029623 ACTACACCCGATCGCTGTTAT 58.970 47.619 18.36 7.62 0.00 1.89
3451 7618 2.223735 ACTACACCCGATCGCTGTTATG 60.224 50.000 18.36 12.69 0.00 1.90
3452 7619 0.810031 ACACCCGATCGCTGTTATGC 60.810 55.000 10.32 0.00 0.00 3.14
3453 7620 1.227556 ACCCGATCGCTGTTATGCC 60.228 57.895 10.32 0.00 0.00 4.40
3454 7621 1.069765 CCCGATCGCTGTTATGCCT 59.930 57.895 10.32 0.00 0.00 4.75
3455 7622 0.946221 CCCGATCGCTGTTATGCCTC 60.946 60.000 10.32 0.00 0.00 4.70
3456 7623 0.032678 CCGATCGCTGTTATGCCTCT 59.967 55.000 10.32 0.00 0.00 3.69
3457 7624 1.539065 CCGATCGCTGTTATGCCTCTT 60.539 52.381 10.32 0.00 0.00 2.85
3458 7625 1.789464 CGATCGCTGTTATGCCTCTTC 59.211 52.381 0.26 0.00 0.00 2.87
3459 7626 2.799562 CGATCGCTGTTATGCCTCTTCA 60.800 50.000 0.26 0.00 0.00 3.02
3460 7627 2.760634 TCGCTGTTATGCCTCTTCAA 57.239 45.000 0.00 0.00 0.00 2.69
3461 7628 3.266510 TCGCTGTTATGCCTCTTCAAT 57.733 42.857 0.00 0.00 0.00 2.57
3462 7629 3.198068 TCGCTGTTATGCCTCTTCAATC 58.802 45.455 0.00 0.00 0.00 2.67
3463 7630 2.033407 CGCTGTTATGCCTCTTCAATCG 60.033 50.000 0.00 0.00 0.00 3.34
3464 7631 2.286654 GCTGTTATGCCTCTTCAATCGC 60.287 50.000 0.00 0.00 0.00 4.58
3465 7632 2.938451 CTGTTATGCCTCTTCAATCGCA 59.062 45.455 0.00 0.00 35.35 5.10
3466 7633 2.677836 TGTTATGCCTCTTCAATCGCAC 59.322 45.455 0.00 0.00 33.31 5.34
3467 7634 2.677836 GTTATGCCTCTTCAATCGCACA 59.322 45.455 0.00 0.00 33.31 4.57
3468 7635 1.089920 ATGCCTCTTCAATCGCACAC 58.910 50.000 0.00 0.00 33.31 3.82
3469 7636 1.291184 TGCCTCTTCAATCGCACACG 61.291 55.000 0.00 0.00 42.01 4.49
3482 7649 2.875080 GCACACGATAGCGAAAAACT 57.125 45.000 7.69 0.00 41.64 2.66
3483 7650 2.495939 GCACACGATAGCGAAAAACTG 58.504 47.619 7.69 0.00 41.64 3.16
3484 7651 2.096417 GCACACGATAGCGAAAAACTGT 60.096 45.455 7.69 0.00 41.64 3.55
3485 7652 3.469629 CACACGATAGCGAAAAACTGTG 58.530 45.455 7.69 6.25 41.64 3.66
3486 7653 3.059868 CACACGATAGCGAAAAACTGTGT 60.060 43.478 7.69 0.00 41.64 3.72
3487 7654 3.059868 ACACGATAGCGAAAAACTGTGTG 60.060 43.478 7.69 0.00 37.86 3.82
3488 7655 3.059868 CACGATAGCGAAAAACTGTGTGT 60.060 43.478 7.69 0.00 41.64 3.72
3489 7656 3.059868 ACGATAGCGAAAAACTGTGTGTG 60.060 43.478 7.69 0.00 41.64 3.82
3490 7657 3.183574 CGATAGCGAAAAACTGTGTGTGA 59.816 43.478 0.00 0.00 40.82 3.58
3491 7658 4.318475 CGATAGCGAAAAACTGTGTGTGAA 60.318 41.667 0.00 0.00 40.82 3.18
3492 7659 3.840890 AGCGAAAAACTGTGTGTGAAA 57.159 38.095 0.00 0.00 0.00 2.69
3493 7660 3.758300 AGCGAAAAACTGTGTGTGAAAG 58.242 40.909 0.00 0.00 0.00 2.62
3494 7661 3.190535 AGCGAAAAACTGTGTGTGAAAGT 59.809 39.130 0.00 0.00 0.00 2.66
3495 7662 3.300590 GCGAAAAACTGTGTGTGAAAGTG 59.699 43.478 0.00 0.00 0.00 3.16
3496 7663 3.851403 CGAAAAACTGTGTGTGAAAGTGG 59.149 43.478 0.00 0.00 0.00 4.00
3497 7664 2.939460 AAACTGTGTGTGAAAGTGGC 57.061 45.000 0.00 0.00 0.00 5.01
3498 7665 1.832883 AACTGTGTGTGAAAGTGGCA 58.167 45.000 0.00 0.00 0.00 4.92
3499 7666 2.057137 ACTGTGTGTGAAAGTGGCAT 57.943 45.000 0.00 0.00 0.00 4.40
3500 7667 1.677576 ACTGTGTGTGAAAGTGGCATG 59.322 47.619 0.00 0.00 0.00 4.06
3501 7668 1.001048 CTGTGTGTGAAAGTGGCATGG 60.001 52.381 0.00 0.00 0.00 3.66
3502 7669 0.314935 GTGTGTGAAAGTGGCATGGG 59.685 55.000 0.00 0.00 0.00 4.00
3503 7670 0.184692 TGTGTGAAAGTGGCATGGGA 59.815 50.000 0.00 0.00 0.00 4.37
3504 7671 0.883833 GTGTGAAAGTGGCATGGGAG 59.116 55.000 0.00 0.00 0.00 4.30
3505 7672 0.770499 TGTGAAAGTGGCATGGGAGA 59.230 50.000 0.00 0.00 0.00 3.71
3506 7673 1.355381 TGTGAAAGTGGCATGGGAGAT 59.645 47.619 0.00 0.00 0.00 2.75
3507 7674 1.747355 GTGAAAGTGGCATGGGAGATG 59.253 52.381 0.00 0.00 0.00 2.90
3508 7675 0.743097 GAAAGTGGCATGGGAGATGC 59.257 55.000 0.00 0.00 43.85 3.91
3509 7676 0.333993 AAAGTGGCATGGGAGATGCT 59.666 50.000 6.60 0.00 44.02 3.79
3510 7677 0.333993 AAGTGGCATGGGAGATGCTT 59.666 50.000 6.60 0.00 44.02 3.91
3511 7678 0.333993 AGTGGCATGGGAGATGCTTT 59.666 50.000 6.60 0.00 44.02 3.51
3512 7679 1.565759 AGTGGCATGGGAGATGCTTTA 59.434 47.619 6.60 0.00 44.02 1.85
3513 7680 2.025037 AGTGGCATGGGAGATGCTTTAA 60.025 45.455 6.60 0.00 44.02 1.52
3514 7681 2.760092 GTGGCATGGGAGATGCTTTAAA 59.240 45.455 6.60 0.00 44.02 1.52
3515 7682 3.195396 GTGGCATGGGAGATGCTTTAAAA 59.805 43.478 6.60 0.00 44.02 1.52
3516 7683 3.837146 TGGCATGGGAGATGCTTTAAAAA 59.163 39.130 6.60 0.00 44.02 1.94
3517 7684 4.470664 TGGCATGGGAGATGCTTTAAAAAT 59.529 37.500 6.60 0.00 44.02 1.82
3518 7685 5.660417 TGGCATGGGAGATGCTTTAAAAATA 59.340 36.000 6.60 0.00 44.02 1.40
3519 7686 6.183360 TGGCATGGGAGATGCTTTAAAAATAG 60.183 38.462 6.60 0.00 44.02 1.73
3520 7687 6.218746 GCATGGGAGATGCTTTAAAAATAGG 58.781 40.000 0.00 0.00 41.52 2.57
3521 7688 6.040842 GCATGGGAGATGCTTTAAAAATAGGA 59.959 38.462 0.00 0.00 41.52 2.94
3522 7689 7.428826 CATGGGAGATGCTTTAAAAATAGGAC 58.571 38.462 0.00 0.00 0.00 3.85
3523 7690 5.891551 TGGGAGATGCTTTAAAAATAGGACC 59.108 40.000 0.00 0.00 0.00 4.46
3524 7691 5.008712 GGGAGATGCTTTAAAAATAGGACCG 59.991 44.000 0.00 0.00 0.00 4.79
3525 7692 5.589050 GGAGATGCTTTAAAAATAGGACCGT 59.411 40.000 0.00 0.00 0.00 4.83
3526 7693 6.095021 GGAGATGCTTTAAAAATAGGACCGTT 59.905 38.462 0.00 0.00 0.00 4.44
3527 7694 7.362660 GGAGATGCTTTAAAAATAGGACCGTTT 60.363 37.037 0.00 0.00 0.00 3.60
3528 7695 7.312899 AGATGCTTTAAAAATAGGACCGTTTG 58.687 34.615 0.00 0.00 0.00 2.93
3529 7696 6.394025 TGCTTTAAAAATAGGACCGTTTGT 57.606 33.333 0.00 0.00 0.00 2.83
3530 7697 7.507733 TGCTTTAAAAATAGGACCGTTTGTA 57.492 32.000 0.00 0.00 0.00 2.41
3531 7698 7.586747 TGCTTTAAAAATAGGACCGTTTGTAG 58.413 34.615 0.00 0.00 0.00 2.74
3532 7699 7.444792 TGCTTTAAAAATAGGACCGTTTGTAGA 59.555 33.333 0.00 0.00 0.00 2.59
3533 7700 8.291740 GCTTTAAAAATAGGACCGTTTGTAGAA 58.708 33.333 0.00 0.00 0.00 2.10
3561 7728 9.871238 AATATAATTTTATGCGATCGTAGGTCT 57.129 29.630 17.81 0.00 0.00 3.85
3564 7731 7.813852 AATTTTATGCGATCGTAGGTCTATC 57.186 36.000 17.81 0.00 0.00 2.08
3565 7732 5.952526 TTTATGCGATCGTAGGTCTATCA 57.047 39.130 17.81 2.75 0.00 2.15
3566 7733 3.833545 ATGCGATCGTAGGTCTATCAC 57.166 47.619 17.81 0.00 0.00 3.06
3567 7734 1.529865 TGCGATCGTAGGTCTATCACG 59.470 52.381 17.81 0.00 37.03 4.35
3568 7735 1.725292 GCGATCGTAGGTCTATCACGC 60.725 57.143 17.81 0.00 35.70 5.34
3569 7736 1.529865 CGATCGTAGGTCTATCACGCA 59.470 52.381 7.03 0.00 35.70 5.24
3570 7737 2.662249 CGATCGTAGGTCTATCACGCAC 60.662 54.545 7.03 0.00 35.70 5.34
3571 7738 0.654160 TCGTAGGTCTATCACGCACG 59.346 55.000 0.00 0.00 35.70 5.34
3572 7739 0.654160 CGTAGGTCTATCACGCACGA 59.346 55.000 0.00 0.00 0.00 4.35
3573 7740 1.594034 CGTAGGTCTATCACGCACGAC 60.594 57.143 0.00 0.00 0.00 4.34
3574 7741 1.399440 GTAGGTCTATCACGCACGACA 59.601 52.381 0.00 0.00 0.00 4.35
3575 7742 0.885879 AGGTCTATCACGCACGACAA 59.114 50.000 0.00 0.00 0.00 3.18
3576 7743 1.271379 AGGTCTATCACGCACGACAAA 59.729 47.619 0.00 0.00 0.00 2.83
3577 7744 2.063266 GGTCTATCACGCACGACAAAA 58.937 47.619 0.00 0.00 0.00 2.44
3578 7745 2.092211 GGTCTATCACGCACGACAAAAG 59.908 50.000 0.00 0.00 0.00 2.27
3579 7746 2.984471 GTCTATCACGCACGACAAAAGA 59.016 45.455 0.00 0.00 0.00 2.52
3580 7747 3.427528 GTCTATCACGCACGACAAAAGAA 59.572 43.478 0.00 0.00 0.00 2.52
3581 7748 4.052608 TCTATCACGCACGACAAAAGAAA 58.947 39.130 0.00 0.00 0.00 2.52
3582 7749 3.684103 ATCACGCACGACAAAAGAAAA 57.316 38.095 0.00 0.00 0.00 2.29
3583 7750 3.473093 TCACGCACGACAAAAGAAAAA 57.527 38.095 0.00 0.00 0.00 1.94
3584 7751 3.165124 TCACGCACGACAAAAGAAAAAC 58.835 40.909 0.00 0.00 0.00 2.43
3585 7752 3.120130 TCACGCACGACAAAAGAAAAACT 60.120 39.130 0.00 0.00 0.00 2.66
3586 7753 3.002149 CACGCACGACAAAAGAAAAACTG 60.002 43.478 0.00 0.00 0.00 3.16
3587 7754 3.168193 CGCACGACAAAAGAAAAACTGT 58.832 40.909 0.00 0.00 0.00 3.55
3588 7755 4.142859 ACGCACGACAAAAGAAAAACTGTA 60.143 37.500 0.00 0.00 0.00 2.74
3589 7756 4.967575 CGCACGACAAAAGAAAAACTGTAT 59.032 37.500 0.00 0.00 0.00 2.29
3590 7757 5.108780 CGCACGACAAAAGAAAAACTGTATG 60.109 40.000 0.00 0.00 0.00 2.39
3591 7758 5.331532 GCACGACAAAAGAAAAACTGTATGC 60.332 40.000 0.00 0.00 31.04 3.14
3592 7759 5.971202 CACGACAAAAGAAAAACTGTATGCT 59.029 36.000 0.00 0.00 0.00 3.79
3593 7760 7.129622 CACGACAAAAGAAAAACTGTATGCTA 58.870 34.615 0.00 0.00 0.00 3.49
3594 7761 7.111593 CACGACAAAAGAAAAACTGTATGCTAC 59.888 37.037 0.00 0.00 0.00 3.58
3595 7762 7.129622 CGACAAAAGAAAAACTGTATGCTACA 58.870 34.615 0.00 0.00 37.13 2.74
3608 7775 6.280855 TGTATGCTACAGTGTTCATACAGT 57.719 37.500 28.51 8.96 43.40 3.55
3609 7776 6.697395 TGTATGCTACAGTGTTCATACAGTT 58.303 36.000 28.51 8.47 43.40 3.16
3610 7777 6.811665 TGTATGCTACAGTGTTCATACAGTTC 59.188 38.462 28.51 15.05 43.40 3.01
3611 7778 5.468540 TGCTACAGTGTTCATACAGTTCT 57.531 39.130 0.00 0.00 35.75 3.01
3612 7779 5.853936 TGCTACAGTGTTCATACAGTTCTT 58.146 37.500 0.00 0.00 35.75 2.52
3613 7780 5.926542 TGCTACAGTGTTCATACAGTTCTTC 59.073 40.000 0.00 0.00 35.75 2.87
3614 7781 5.926542 GCTACAGTGTTCATACAGTTCTTCA 59.073 40.000 0.00 0.00 35.75 3.02
3615 7782 6.090088 GCTACAGTGTTCATACAGTTCTTCAG 59.910 42.308 0.00 0.00 35.75 3.02
3616 7783 6.161855 ACAGTGTTCATACAGTTCTTCAGA 57.838 37.500 0.00 0.00 35.75 3.27
3617 7784 6.582636 ACAGTGTTCATACAGTTCTTCAGAA 58.417 36.000 0.00 0.00 35.75 3.02
3618 7785 7.220030 ACAGTGTTCATACAGTTCTTCAGAAT 58.780 34.615 0.00 0.00 35.75 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.305549 GGACTAGGGGGTGTTCGGA 60.306 63.158 0.00 0.00 0.00 4.55
1 2 1.611261 TGGACTAGGGGGTGTTCGG 60.611 63.158 0.00 0.00 0.00 4.30
2 3 1.614241 CCTGGACTAGGGGGTGTTCG 61.614 65.000 0.00 0.00 43.33 3.95
3 4 2.297937 CCTGGACTAGGGGGTGTTC 58.702 63.158 0.00 0.00 43.33 3.18
4 5 4.581391 CCTGGACTAGGGGGTGTT 57.419 61.111 0.00 0.00 43.33 3.32
5 6 4.306062 GTAGTCCTGGACTAGGGGGTGT 62.306 59.091 31.64 10.28 44.42 4.16
6 7 1.688627 GTAGTCCTGGACTAGGGGGTG 60.689 61.905 31.64 0.00 44.42 4.61
7 8 0.635555 GTAGTCCTGGACTAGGGGGT 59.364 60.000 31.64 11.66 44.42 4.95
8 9 0.105607 GGTAGTCCTGGACTAGGGGG 60.106 65.000 31.64 0.00 44.42 5.40
9 10 0.935194 AGGTAGTCCTGGACTAGGGG 59.065 60.000 31.64 0.00 44.42 4.79
10 11 1.569548 TGAGGTAGTCCTGGACTAGGG 59.430 57.143 31.64 0.00 44.42 3.53
11 12 3.053544 TCTTGAGGTAGTCCTGGACTAGG 60.054 52.174 31.64 16.15 44.42 3.02
12 13 4.237976 TCTTGAGGTAGTCCTGGACTAG 57.762 50.000 31.64 22.16 44.42 2.57
13 14 4.669866 TTCTTGAGGTAGTCCTGGACTA 57.330 45.455 28.36 28.36 45.24 2.59
14 15 3.544698 TTCTTGAGGTAGTCCTGGACT 57.455 47.619 30.48 30.48 45.24 3.85
15 16 3.323979 TGTTTCTTGAGGTAGTCCTGGAC 59.676 47.826 19.20 19.20 45.24 4.02
16 17 3.583228 TGTTTCTTGAGGTAGTCCTGGA 58.417 45.455 0.00 0.00 45.24 3.86
17 18 4.508662 GATGTTTCTTGAGGTAGTCCTGG 58.491 47.826 0.00 0.00 45.24 4.45
18 19 4.020218 TGGATGTTTCTTGAGGTAGTCCTG 60.020 45.833 0.00 0.00 45.24 3.86
20 21 4.553330 TGGATGTTTCTTGAGGTAGTCC 57.447 45.455 0.00 0.00 0.00 3.85
21 22 5.734720 TCATGGATGTTTCTTGAGGTAGTC 58.265 41.667 0.00 0.00 0.00 2.59
22 23 5.762179 TCATGGATGTTTCTTGAGGTAGT 57.238 39.130 0.00 0.00 0.00 2.73
23 24 6.825213 TCAATCATGGATGTTTCTTGAGGTAG 59.175 38.462 0.00 0.00 0.00 3.18
24 25 6.720309 TCAATCATGGATGTTTCTTGAGGTA 58.280 36.000 0.00 0.00 0.00 3.08
25 26 5.573219 TCAATCATGGATGTTTCTTGAGGT 58.427 37.500 0.00 0.00 0.00 3.85
26 27 6.512903 CGATCAATCATGGATGTTTCTTGAGG 60.513 42.308 0.00 0.00 0.00 3.86
27 28 6.427974 CGATCAATCATGGATGTTTCTTGAG 58.572 40.000 0.00 0.00 0.00 3.02
28 29 5.220912 GCGATCAATCATGGATGTTTCTTGA 60.221 40.000 0.00 0.00 0.00 3.02
29 30 4.974275 GCGATCAATCATGGATGTTTCTTG 59.026 41.667 0.00 0.00 0.00 3.02
30 31 4.260907 CGCGATCAATCATGGATGTTTCTT 60.261 41.667 0.00 0.00 0.00 2.52
31 32 3.249320 CGCGATCAATCATGGATGTTTCT 59.751 43.478 0.00 0.00 0.00 2.52
32 33 3.548587 CGCGATCAATCATGGATGTTTC 58.451 45.455 0.00 0.00 0.00 2.78
33 34 2.287188 GCGCGATCAATCATGGATGTTT 60.287 45.455 12.10 0.00 0.00 2.83
34 35 1.265095 GCGCGATCAATCATGGATGTT 59.735 47.619 12.10 0.00 0.00 2.71
35 36 0.870393 GCGCGATCAATCATGGATGT 59.130 50.000 12.10 0.00 0.00 3.06
252 253 6.515272 TTGAAGCATTTGTCTATTCTTCCC 57.485 37.500 0.00 0.00 29.99 3.97
296 297 1.025812 TGACCGCGACCATTGTTTTT 58.974 45.000 8.23 0.00 0.00 1.94
443 454 3.724751 CGCGGAATAACAAAACGTTTTCA 59.275 39.130 22.90 11.77 39.14 2.69
516 527 5.281314 ACACTATCCAGTATCCTTTGGAGT 58.719 41.667 0.00 0.00 46.01 3.85
560 590 5.468746 TGAGAGGGAAACAGATACAAAAACG 59.531 40.000 0.00 0.00 0.00 3.60
572 608 6.017192 ACAAGTATACTCTGAGAGGGAAACA 58.983 40.000 14.83 0.00 33.35 2.83
578 614 9.378551 CTAGCTATACAAGTATACTCTGAGAGG 57.621 40.741 14.83 0.00 33.35 3.69
597 641 1.216122 GACCGACGACGACTAGCTAT 58.784 55.000 9.28 0.00 42.66 2.97
648 698 0.976073 CTGGTCGGGCTTCTTCCCTA 60.976 60.000 0.00 0.00 44.30 3.53
726 781 1.810755 GTGTCCTCCGGAACAAAATCC 59.189 52.381 10.53 0.00 31.38 3.01
930 995 0.670546 CGCACTTCCTACACACCCTG 60.671 60.000 0.00 0.00 0.00 4.45
931 996 0.830444 TCGCACTTCCTACACACCCT 60.830 55.000 0.00 0.00 0.00 4.34
997 1065 4.240103 CATGGCCGCTCCCATCGA 62.240 66.667 0.00 0.00 43.63 3.59
1137 1205 3.414700 CGCTCGTGGTTGTGCTCC 61.415 66.667 0.00 0.00 0.00 4.70
1422 1490 1.224592 GGTGCCCCAGATCACGAAT 59.775 57.895 0.00 0.00 34.20 3.34
1503 1571 4.092968 GCGATCGTTGAAATACCTTTGAGT 59.907 41.667 17.81 0.00 0.00 3.41
1542 1627 2.665245 CGCTCATGCAACGATCAACAAA 60.665 45.455 0.00 0.00 39.64 2.83
1546 1631 1.297456 TGCGCTCATGCAACGATCAA 61.297 50.000 9.73 0.00 43.02 2.57
1590 1675 9.874215 GAATATTTGCATCGATCCATATACATG 57.126 33.333 2.11 0.00 0.00 3.21
1591 1676 9.617523 TGAATATTTGCATCGATCCATATACAT 57.382 29.630 2.11 0.00 0.00 2.29
1613 1699 3.753294 AGAAACAGACACGGACTGAAT 57.247 42.857 11.48 1.86 38.55 2.57
1618 1704 0.586802 GCCAAGAAACAGACACGGAC 59.413 55.000 0.00 0.00 0.00 4.79
1757 1843 4.063967 ACGCGCAGACCGAATCCA 62.064 61.111 5.73 0.00 40.02 3.41
1871 1957 3.367743 TACACGCGCGGGAACTCT 61.368 61.111 41.88 19.42 0.00 3.24
1949 2035 2.284921 TCCTCCTCCCACAGGCTG 60.285 66.667 14.16 14.16 43.08 4.85
2005 2091 3.687102 CGTACAGCACCGACCCCA 61.687 66.667 0.00 0.00 0.00 4.96
2625 2714 1.377202 GACATGACATGCCCGGTGT 60.377 57.895 15.49 0.00 0.00 4.16
2626 2715 2.114670 GGACATGACATGCCCGGTG 61.115 63.158 15.49 0.00 0.00 4.94
2627 2716 2.272146 GGACATGACATGCCCGGT 59.728 61.111 15.49 0.00 0.00 5.28
2629 2718 2.114670 GTGGGACATGACATGCCCG 61.115 63.158 28.11 6.28 44.48 6.13
2632 2721 1.200716 CAACAGTGGGACATGACATGC 59.799 52.381 15.49 8.15 44.52 4.06
2633 2722 1.200716 GCAACAGTGGGACATGACATG 59.799 52.381 14.02 14.02 44.52 3.21
2634 2723 1.538047 GCAACAGTGGGACATGACAT 58.462 50.000 0.00 0.00 44.52 3.06
2680 2769 6.009589 TCCAGTGAAAACAACATGATATGGT 58.990 36.000 0.00 0.00 33.60 3.55
2681 2770 6.513806 TCCAGTGAAAACAACATGATATGG 57.486 37.500 0.00 0.00 33.60 2.74
2682 2771 7.993101 AGATCCAGTGAAAACAACATGATATG 58.007 34.615 0.00 0.00 0.00 1.78
2683 2772 7.830697 TGAGATCCAGTGAAAACAACATGATAT 59.169 33.333 0.00 0.00 0.00 1.63
2684 2773 7.167535 TGAGATCCAGTGAAAACAACATGATA 58.832 34.615 0.00 0.00 0.00 2.15
2685 2774 6.005823 TGAGATCCAGTGAAAACAACATGAT 58.994 36.000 0.00 0.00 0.00 2.45
2686 2775 5.375773 TGAGATCCAGTGAAAACAACATGA 58.624 37.500 0.00 0.00 0.00 3.07
2687 2776 5.694231 TGAGATCCAGTGAAAACAACATG 57.306 39.130 0.00 0.00 0.00 3.21
2688 2777 6.322201 ACTTTGAGATCCAGTGAAAACAACAT 59.678 34.615 0.00 0.00 0.00 2.71
2699 2788 4.696479 ACTGACAACTTTGAGATCCAGT 57.304 40.909 0.00 0.00 0.00 4.00
2702 2791 5.869888 ACGATAACTGACAACTTTGAGATCC 59.130 40.000 0.00 0.00 0.00 3.36
2709 2798 7.730364 AATCTTGACGATAACTGACAACTTT 57.270 32.000 0.00 0.00 0.00 2.66
2719 2808 5.331905 CGCTGAGCTAAATCTTGACGATAAC 60.332 44.000 1.78 0.00 0.00 1.89
2758 2847 0.515564 ATGCGTGCGTGTAAGAAACC 59.484 50.000 0.00 0.00 0.00 3.27
2767 2856 3.857854 GAGAGCCATGCGTGCGTG 61.858 66.667 7.08 7.08 0.00 5.34
2768 2857 3.596066 AAGAGAGCCATGCGTGCGT 62.596 57.895 0.00 0.00 0.00 5.24
2769 2858 2.816958 AAGAGAGCCATGCGTGCG 60.817 61.111 0.00 0.00 0.00 5.34
2770 2859 1.300971 TTCAAGAGAGCCATGCGTGC 61.301 55.000 0.00 0.00 0.00 5.34
2787 2876 7.115520 GGTTTAGTCGAAACTAGGTACACTTTC 59.884 40.741 8.25 0.00 45.80 2.62
2791 2880 5.164233 GGGTTTAGTCGAAACTAGGTACAC 58.836 45.833 8.25 0.00 45.80 2.90
2793 2882 5.183904 TCTGGGTTTAGTCGAAACTAGGTAC 59.816 44.000 8.25 0.00 45.80 3.34
2795 2884 4.154942 TCTGGGTTTAGTCGAAACTAGGT 58.845 43.478 8.25 0.00 45.80 3.08
2797 2886 6.872020 TCATTTCTGGGTTTAGTCGAAACTAG 59.128 38.462 8.25 7.47 45.80 2.57
2798 2887 6.761312 TCATTTCTGGGTTTAGTCGAAACTA 58.239 36.000 8.25 0.00 45.80 2.24
2800 2889 5.934935 TCATTTCTGGGTTTAGTCGAAAC 57.065 39.130 0.26 0.26 45.80 2.78
2801 2890 5.646360 GGATCATTTCTGGGTTTAGTCGAAA 59.354 40.000 0.00 0.00 0.00 3.46
2802 2891 5.183228 GGATCATTTCTGGGTTTAGTCGAA 58.817 41.667 0.00 0.00 0.00 3.71
2804 2893 3.555956 CGGATCATTTCTGGGTTTAGTCG 59.444 47.826 0.00 0.00 0.00 4.18
2806 2895 4.469945 TCTCGGATCATTTCTGGGTTTAGT 59.530 41.667 0.00 0.00 32.47 2.24
2809 2898 4.301072 TTCTCGGATCATTTCTGGGTTT 57.699 40.909 0.00 0.00 32.47 3.27
2812 2901 3.378427 GGTTTTCTCGGATCATTTCTGGG 59.622 47.826 0.00 0.00 31.77 4.45
2813 2902 4.095483 CAGGTTTTCTCGGATCATTTCTGG 59.905 45.833 0.00 0.00 0.00 3.86
2814 2903 4.095483 CCAGGTTTTCTCGGATCATTTCTG 59.905 45.833 0.00 0.00 0.00 3.02
2815 2904 4.019321 TCCAGGTTTTCTCGGATCATTTCT 60.019 41.667 0.00 0.00 0.00 2.52
2816 2905 4.261801 TCCAGGTTTTCTCGGATCATTTC 58.738 43.478 0.00 0.00 0.00 2.17
2817 2906 4.265073 CTCCAGGTTTTCTCGGATCATTT 58.735 43.478 0.00 0.00 0.00 2.32
2818 2907 3.370953 CCTCCAGGTTTTCTCGGATCATT 60.371 47.826 0.00 0.00 0.00 2.57
2819 2908 2.171448 CCTCCAGGTTTTCTCGGATCAT 59.829 50.000 0.00 0.00 0.00 2.45
2820 2909 1.555075 CCTCCAGGTTTTCTCGGATCA 59.445 52.381 0.00 0.00 0.00 2.92
2821 2910 2.317530 CCTCCAGGTTTTCTCGGATC 57.682 55.000 0.00 0.00 0.00 3.36
2835 6643 1.076014 TGTCGCCTAGTCACCTCCA 59.924 57.895 0.00 0.00 0.00 3.86
2836 6644 1.511768 GTGTCGCCTAGTCACCTCC 59.488 63.158 0.00 0.00 33.72 4.30
2848 6656 2.809601 ACGGAATGCTCGTGTCGC 60.810 61.111 0.00 0.00 39.55 5.19
2853 6661 1.066143 AGGAAATCACGGAATGCTCGT 60.066 47.619 0.00 0.00 41.93 4.18
2854 6662 1.656652 AGGAAATCACGGAATGCTCG 58.343 50.000 0.00 0.00 0.00 5.03
2855 6663 4.440839 AAAAGGAAATCACGGAATGCTC 57.559 40.909 0.00 0.00 0.00 4.26
2856 6664 4.142687 CGTAAAAGGAAATCACGGAATGCT 60.143 41.667 0.00 0.00 0.00 3.79
2857 6665 4.095610 CGTAAAAGGAAATCACGGAATGC 58.904 43.478 0.00 0.00 0.00 3.56
2868 6680 3.829601 ACATGATTGCCCGTAAAAGGAAA 59.170 39.130 0.00 0.00 0.00 3.13
2869 6681 3.426615 ACATGATTGCCCGTAAAAGGAA 58.573 40.909 0.00 0.00 0.00 3.36
2872 6684 2.791158 GCGACATGATTGCCCGTAAAAG 60.791 50.000 0.00 0.00 0.00 2.27
2876 6688 1.880796 CGCGACATGATTGCCCGTA 60.881 57.895 0.00 0.00 33.57 4.02
2880 6692 0.447801 AGTTTCGCGACATGATTGCC 59.552 50.000 9.15 0.00 33.57 4.52
2881 6693 1.135972 ACAGTTTCGCGACATGATTGC 60.136 47.619 9.15 0.00 0.00 3.56
2882 6694 2.880822 ACAGTTTCGCGACATGATTG 57.119 45.000 9.15 5.14 0.00 2.67
2883 6695 3.994392 ACTAACAGTTTCGCGACATGATT 59.006 39.130 9.15 3.63 0.00 2.57
2884 6696 3.585862 ACTAACAGTTTCGCGACATGAT 58.414 40.909 9.15 5.32 0.00 2.45
2889 6701 3.546670 CCAGATACTAACAGTTTCGCGAC 59.453 47.826 9.15 0.00 32.50 5.19
2891 6703 3.508762 ACCAGATACTAACAGTTTCGCG 58.491 45.455 0.00 0.00 32.50 5.87
2896 6708 4.321750 CGTGGTGACCAGATACTAACAGTT 60.322 45.833 3.58 0.00 32.34 3.16
2904 6716 1.816835 TCTGACGTGGTGACCAGATAC 59.183 52.381 3.58 0.00 32.34 2.24
2905 6717 1.816835 GTCTGACGTGGTGACCAGATA 59.183 52.381 3.58 0.00 37.88 1.98
2906 6718 0.603569 GTCTGACGTGGTGACCAGAT 59.396 55.000 3.58 0.00 37.88 2.90
2907 6719 1.792118 CGTCTGACGTGGTGACCAGA 61.792 60.000 21.30 0.00 36.74 3.86
2908 6720 1.371758 CGTCTGACGTGGTGACCAG 60.372 63.158 21.30 1.62 36.74 4.00
2909 6721 2.725641 CGTCTGACGTGGTGACCA 59.274 61.111 21.30 0.00 36.74 4.02
2919 6731 1.269309 ACTCTCAAGCACACGTCTGAC 60.269 52.381 0.00 0.00 0.00 3.51
2920 6732 1.032794 ACTCTCAAGCACACGTCTGA 58.967 50.000 0.00 0.00 0.00 3.27
2921 6733 1.135046 CACTCTCAAGCACACGTCTG 58.865 55.000 0.00 0.00 0.00 3.51
2922 6734 1.032794 TCACTCTCAAGCACACGTCT 58.967 50.000 0.00 0.00 0.00 4.18
2938 7026 2.660900 GCCACGTTTATTGACACGTCAC 60.661 50.000 0.00 0.00 46.52 3.67
2943 7031 4.384547 GGATTTTGCCACGTTTATTGACAC 59.615 41.667 0.00 0.00 0.00 3.67
2964 7052 9.489084 CGATCATGGACAATAAACTTTATAGGA 57.511 33.333 0.00 0.00 0.00 2.94
3050 7153 2.680841 CAAGTCAAAAACGGTCCTGTCA 59.319 45.455 0.00 0.00 0.00 3.58
3055 7158 1.001706 GCTCCAAGTCAAAAACGGTCC 60.002 52.381 0.00 0.00 0.00 4.46
3058 7161 0.313987 GGGCTCCAAGTCAAAAACGG 59.686 55.000 0.00 0.00 0.00 4.44
3091 7194 4.754667 GGTTCGCAGGGACCCGTC 62.755 72.222 4.40 0.00 0.00 4.79
3100 7203 2.552315 AGGTGTTGTAAATGGTTCGCAG 59.448 45.455 0.00 0.00 0.00 5.18
3103 7206 3.562141 TGTGAGGTGTTGTAAATGGTTCG 59.438 43.478 0.00 0.00 0.00 3.95
3123 7226 0.813184 CCGCCAAAATCATCAGCTGT 59.187 50.000 14.67 0.00 0.00 4.40
3125 7228 0.323725 ACCCGCCAAAATCATCAGCT 60.324 50.000 0.00 0.00 0.00 4.24
3129 7232 1.750193 TCAGACCCGCCAAAATCATC 58.250 50.000 0.00 0.00 0.00 2.92
3133 7270 0.603065 GCTTTCAGACCCGCCAAAAT 59.397 50.000 0.00 0.00 0.00 1.82
3141 7278 2.673368 CGAGTATGTTGCTTTCAGACCC 59.327 50.000 0.00 0.00 0.00 4.46
3146 7283 7.485418 TTTTAGAACGAGTATGTTGCTTTCA 57.515 32.000 0.00 0.00 30.75 2.69
3170 7307 4.555348 TCGCTTCGGTTAAACATGTTTT 57.445 36.364 27.66 12.78 34.23 2.43
3174 7311 3.424433 GGACTTCGCTTCGGTTAAACATG 60.424 47.826 0.00 0.00 0.00 3.21
3248 7415 2.174349 CAAAGAGCGGCTTCGTGC 59.826 61.111 2.97 0.00 35.24 5.34
3258 7425 1.566018 CGTCCCCGTTGACAAAGAGC 61.566 60.000 2.40 0.00 34.88 4.09
3262 7429 0.748729 AAAGCGTCCCCGTTGACAAA 60.749 50.000 0.00 0.00 34.88 2.83
3264 7431 1.890041 CAAAGCGTCCCCGTTGACA 60.890 57.895 2.97 0.00 34.88 3.58
3333 7500 2.051703 TTTTCCTTGCGCGCGTTC 60.052 55.556 32.35 16.47 0.00 3.95
3368 7535 0.179048 TATCACCATCCTTGCCAGCG 60.179 55.000 0.00 0.00 0.00 5.18
3370 7537 2.684881 GTGTTATCACCATCCTTGCCAG 59.315 50.000 0.00 0.00 38.51 4.85
3373 7540 4.398988 TGAATGTGTTATCACCATCCTTGC 59.601 41.667 1.53 0.00 43.26 4.01
3400 7567 8.358148 GCCTGAGATGTCATAATCATCATTTTT 58.642 33.333 0.00 0.00 42.63 1.94
3401 7568 7.504574 TGCCTGAGATGTCATAATCATCATTTT 59.495 33.333 0.00 0.00 42.63 1.82
3402 7569 7.002276 TGCCTGAGATGTCATAATCATCATTT 58.998 34.615 0.00 0.00 42.63 2.32
3403 7570 6.430308 GTGCCTGAGATGTCATAATCATCATT 59.570 38.462 0.00 0.00 42.63 2.57
3404 7571 5.938710 GTGCCTGAGATGTCATAATCATCAT 59.061 40.000 0.00 0.00 42.63 2.45
3405 7572 5.303165 GTGCCTGAGATGTCATAATCATCA 58.697 41.667 0.00 1.64 42.63 3.07
3406 7573 4.694509 GGTGCCTGAGATGTCATAATCATC 59.305 45.833 0.00 0.00 41.11 2.92
3407 7574 4.103627 TGGTGCCTGAGATGTCATAATCAT 59.896 41.667 0.00 0.00 30.18 2.45
3408 7575 3.455543 TGGTGCCTGAGATGTCATAATCA 59.544 43.478 0.00 1.40 30.18 2.57
3409 7576 3.812053 GTGGTGCCTGAGATGTCATAATC 59.188 47.826 0.00 0.00 30.18 1.75
3410 7577 3.457380 AGTGGTGCCTGAGATGTCATAAT 59.543 43.478 0.00 0.00 30.18 1.28
3411 7578 2.840038 AGTGGTGCCTGAGATGTCATAA 59.160 45.455 0.00 0.00 30.18 1.90
3412 7579 2.470990 AGTGGTGCCTGAGATGTCATA 58.529 47.619 0.00 0.00 30.18 2.15
3413 7580 1.283347 AGTGGTGCCTGAGATGTCAT 58.717 50.000 0.00 0.00 30.18 3.06
3414 7581 1.550524 GTAGTGGTGCCTGAGATGTCA 59.449 52.381 0.00 0.00 0.00 3.58
3415 7582 1.550524 TGTAGTGGTGCCTGAGATGTC 59.449 52.381 0.00 0.00 0.00 3.06
3416 7583 1.276421 GTGTAGTGGTGCCTGAGATGT 59.724 52.381 0.00 0.00 0.00 3.06
3417 7584 1.406069 GGTGTAGTGGTGCCTGAGATG 60.406 57.143 0.00 0.00 0.00 2.90
3418 7585 0.905357 GGTGTAGTGGTGCCTGAGAT 59.095 55.000 0.00 0.00 0.00 2.75
3419 7586 1.192146 GGGTGTAGTGGTGCCTGAGA 61.192 60.000 0.00 0.00 0.00 3.27
3420 7587 1.296715 GGGTGTAGTGGTGCCTGAG 59.703 63.158 0.00 0.00 0.00 3.35
3421 7588 2.579657 CGGGTGTAGTGGTGCCTGA 61.580 63.158 0.00 0.00 0.00 3.86
3422 7589 1.899437 ATCGGGTGTAGTGGTGCCTG 61.899 60.000 0.00 0.00 0.00 4.85
3423 7590 1.612442 ATCGGGTGTAGTGGTGCCT 60.612 57.895 0.00 0.00 0.00 4.75
3424 7591 1.153429 GATCGGGTGTAGTGGTGCC 60.153 63.158 0.00 0.00 0.00 5.01
3425 7592 1.518572 CGATCGGGTGTAGTGGTGC 60.519 63.158 7.38 0.00 0.00 5.01
3426 7593 1.518572 GCGATCGGGTGTAGTGGTG 60.519 63.158 18.30 0.00 0.00 4.17
3427 7594 1.681327 AGCGATCGGGTGTAGTGGT 60.681 57.895 18.30 0.00 0.00 4.16
3428 7595 1.226974 CAGCGATCGGGTGTAGTGG 60.227 63.158 18.30 0.00 39.31 4.00
3429 7596 4.402192 CAGCGATCGGGTGTAGTG 57.598 61.111 18.30 0.00 39.31 2.74
3435 7602 1.227556 GGCATAACAGCGATCGGGT 60.228 57.895 18.30 1.71 34.64 5.28
3436 7603 0.946221 GAGGCATAACAGCGATCGGG 60.946 60.000 18.30 0.00 34.64 5.14
3437 7604 0.032678 AGAGGCATAACAGCGATCGG 59.967 55.000 18.30 3.26 34.64 4.18
3438 7605 1.789464 GAAGAGGCATAACAGCGATCG 59.211 52.381 11.69 11.69 34.64 3.69
3439 7606 2.826428 TGAAGAGGCATAACAGCGATC 58.174 47.619 0.00 0.00 34.64 3.69
3440 7607 2.988010 TGAAGAGGCATAACAGCGAT 57.012 45.000 0.00 0.00 34.64 4.58
3441 7608 2.760634 TTGAAGAGGCATAACAGCGA 57.239 45.000 0.00 0.00 34.64 4.93
3442 7609 2.033407 CGATTGAAGAGGCATAACAGCG 60.033 50.000 0.00 0.00 34.64 5.18
3443 7610 2.286654 GCGATTGAAGAGGCATAACAGC 60.287 50.000 0.00 0.00 0.00 4.40
3444 7611 2.938451 TGCGATTGAAGAGGCATAACAG 59.062 45.455 0.00 0.00 0.00 3.16
3445 7612 2.677836 GTGCGATTGAAGAGGCATAACA 59.322 45.455 0.00 0.00 37.77 2.41
3446 7613 2.677836 TGTGCGATTGAAGAGGCATAAC 59.322 45.455 0.00 0.00 37.77 1.89
3447 7614 2.677836 GTGTGCGATTGAAGAGGCATAA 59.322 45.455 0.00 0.00 37.77 1.90
3448 7615 2.279741 GTGTGCGATTGAAGAGGCATA 58.720 47.619 0.00 0.00 37.77 3.14
3449 7616 1.089920 GTGTGCGATTGAAGAGGCAT 58.910 50.000 0.00 0.00 37.77 4.40
3450 7617 1.291184 CGTGTGCGATTGAAGAGGCA 61.291 55.000 0.00 0.00 41.33 4.75
3451 7618 1.014044 TCGTGTGCGATTGAAGAGGC 61.014 55.000 0.00 0.00 42.81 4.70
3452 7619 3.122150 TCGTGTGCGATTGAAGAGG 57.878 52.632 0.00 0.00 42.81 3.69
3463 7630 2.096417 ACAGTTTTTCGCTATCGTGTGC 60.096 45.455 0.00 0.00 36.96 4.57
3464 7631 3.059868 ACACAGTTTTTCGCTATCGTGTG 60.060 43.478 0.00 4.29 39.52 3.82
3465 7632 3.059868 CACACAGTTTTTCGCTATCGTGT 60.060 43.478 0.00 0.00 36.84 4.49
3466 7633 3.059868 ACACACAGTTTTTCGCTATCGTG 60.060 43.478 0.00 0.00 36.96 4.35
3467 7634 3.059868 CACACACAGTTTTTCGCTATCGT 60.060 43.478 0.00 0.00 36.96 3.73
3468 7635 3.183574 TCACACACAGTTTTTCGCTATCG 59.816 43.478 0.00 0.00 0.00 2.92
3469 7636 4.725556 TCACACACAGTTTTTCGCTATC 57.274 40.909 0.00 0.00 0.00 2.08
3470 7637 5.065988 ACTTTCACACACAGTTTTTCGCTAT 59.934 36.000 0.00 0.00 0.00 2.97
3471 7638 4.393680 ACTTTCACACACAGTTTTTCGCTA 59.606 37.500 0.00 0.00 0.00 4.26
3472 7639 3.190535 ACTTTCACACACAGTTTTTCGCT 59.809 39.130 0.00 0.00 0.00 4.93
3473 7640 3.300590 CACTTTCACACACAGTTTTTCGC 59.699 43.478 0.00 0.00 0.00 4.70
3474 7641 3.851403 CCACTTTCACACACAGTTTTTCG 59.149 43.478 0.00 0.00 0.00 3.46
3475 7642 3.612423 GCCACTTTCACACACAGTTTTTC 59.388 43.478 0.00 0.00 0.00 2.29
3476 7643 3.006323 TGCCACTTTCACACACAGTTTTT 59.994 39.130 0.00 0.00 0.00 1.94
3477 7644 2.560542 TGCCACTTTCACACACAGTTTT 59.439 40.909 0.00 0.00 0.00 2.43
3478 7645 2.166829 TGCCACTTTCACACACAGTTT 58.833 42.857 0.00 0.00 0.00 2.66
3479 7646 1.832883 TGCCACTTTCACACACAGTT 58.167 45.000 0.00 0.00 0.00 3.16
3480 7647 1.677576 CATGCCACTTTCACACACAGT 59.322 47.619 0.00 0.00 0.00 3.55
3481 7648 1.001048 CCATGCCACTTTCACACACAG 60.001 52.381 0.00 0.00 0.00 3.66
3482 7649 1.031235 CCATGCCACTTTCACACACA 58.969 50.000 0.00 0.00 0.00 3.72
3483 7650 0.314935 CCCATGCCACTTTCACACAC 59.685 55.000 0.00 0.00 0.00 3.82
3484 7651 0.184692 TCCCATGCCACTTTCACACA 59.815 50.000 0.00 0.00 0.00 3.72
3485 7652 0.883833 CTCCCATGCCACTTTCACAC 59.116 55.000 0.00 0.00 0.00 3.82
3486 7653 0.770499 TCTCCCATGCCACTTTCACA 59.230 50.000 0.00 0.00 0.00 3.58
3487 7654 1.747355 CATCTCCCATGCCACTTTCAC 59.253 52.381 0.00 0.00 0.00 3.18
3488 7655 1.956636 GCATCTCCCATGCCACTTTCA 60.957 52.381 0.00 0.00 39.01 2.69
3489 7656 0.743097 GCATCTCCCATGCCACTTTC 59.257 55.000 0.00 0.00 39.01 2.62
3490 7657 0.333993 AGCATCTCCCATGCCACTTT 59.666 50.000 2.93 0.00 45.59 2.66
3491 7658 0.333993 AAGCATCTCCCATGCCACTT 59.666 50.000 2.93 0.00 45.59 3.16
3492 7659 0.333993 AAAGCATCTCCCATGCCACT 59.666 50.000 2.93 0.00 45.59 4.00
3493 7660 2.057137 TAAAGCATCTCCCATGCCAC 57.943 50.000 2.93 0.00 45.59 5.01
3494 7661 2.824689 TTAAAGCATCTCCCATGCCA 57.175 45.000 2.93 0.00 45.59 4.92
3495 7662 4.470334 TTTTTAAAGCATCTCCCATGCC 57.530 40.909 2.93 0.00 45.59 4.40
3496 7663 6.040842 TCCTATTTTTAAAGCATCTCCCATGC 59.959 38.462 0.00 0.00 44.85 4.06
3497 7664 7.428826 GTCCTATTTTTAAAGCATCTCCCATG 58.571 38.462 0.00 0.00 0.00 3.66
3498 7665 6.551227 GGTCCTATTTTTAAAGCATCTCCCAT 59.449 38.462 0.00 0.00 0.00 4.00
3499 7666 5.891551 GGTCCTATTTTTAAAGCATCTCCCA 59.108 40.000 0.00 0.00 0.00 4.37
3500 7667 5.008712 CGGTCCTATTTTTAAAGCATCTCCC 59.991 44.000 0.00 0.00 0.00 4.30
3501 7668 5.589050 ACGGTCCTATTTTTAAAGCATCTCC 59.411 40.000 0.00 0.00 0.00 3.71
3502 7669 6.679327 ACGGTCCTATTTTTAAAGCATCTC 57.321 37.500 0.00 0.00 0.00 2.75
3503 7670 7.039993 ACAAACGGTCCTATTTTTAAAGCATCT 60.040 33.333 0.00 0.00 0.00 2.90
3504 7671 7.088272 ACAAACGGTCCTATTTTTAAAGCATC 58.912 34.615 0.00 0.00 0.00 3.91
3505 7672 6.988522 ACAAACGGTCCTATTTTTAAAGCAT 58.011 32.000 0.00 0.00 0.00 3.79
3506 7673 6.394025 ACAAACGGTCCTATTTTTAAAGCA 57.606 33.333 0.00 0.00 0.00 3.91
3507 7674 7.809665 TCTACAAACGGTCCTATTTTTAAAGC 58.190 34.615 0.00 0.00 0.00 3.51
3535 7702 9.871238 AGACCTACGATCGCATAAAATTATATT 57.129 29.630 16.60 0.00 0.00 1.28
3538 7705 9.517609 GATAGACCTACGATCGCATAAAATTAT 57.482 33.333 16.60 4.35 0.00 1.28
3539 7706 8.517056 TGATAGACCTACGATCGCATAAAATTA 58.483 33.333 16.60 0.00 34.20 1.40
3540 7707 7.328737 GTGATAGACCTACGATCGCATAAAATT 59.671 37.037 16.60 0.00 39.63 1.82
3541 7708 6.807230 GTGATAGACCTACGATCGCATAAAAT 59.193 38.462 16.60 0.88 39.63 1.82
3542 7709 6.147581 GTGATAGACCTACGATCGCATAAAA 58.852 40.000 16.60 0.00 39.63 1.52
3543 7710 5.616204 CGTGATAGACCTACGATCGCATAAA 60.616 44.000 16.60 0.00 39.76 1.40
3544 7711 4.142966 CGTGATAGACCTACGATCGCATAA 60.143 45.833 16.60 0.00 39.76 1.90
3545 7712 3.370061 CGTGATAGACCTACGATCGCATA 59.630 47.826 16.60 0.00 39.76 3.14
3546 7713 2.159824 CGTGATAGACCTACGATCGCAT 59.840 50.000 16.60 0.00 39.76 4.73
3547 7714 1.529865 CGTGATAGACCTACGATCGCA 59.470 52.381 16.60 0.00 39.76 5.10
3548 7715 1.725292 GCGTGATAGACCTACGATCGC 60.725 57.143 16.60 0.00 40.01 4.58
3549 7716 1.529865 TGCGTGATAGACCTACGATCG 59.470 52.381 14.88 14.88 40.01 3.69
3550 7717 2.662249 CGTGCGTGATAGACCTACGATC 60.662 54.545 0.00 0.00 40.01 3.69
3551 7718 1.263484 CGTGCGTGATAGACCTACGAT 59.737 52.381 0.00 0.00 40.01 3.73
3552 7719 0.654160 CGTGCGTGATAGACCTACGA 59.346 55.000 0.00 0.00 40.01 3.43
3553 7720 0.654160 TCGTGCGTGATAGACCTACG 59.346 55.000 0.00 0.00 40.52 3.51
3554 7721 1.399440 TGTCGTGCGTGATAGACCTAC 59.601 52.381 0.00 0.00 33.04 3.18
3555 7722 1.741528 TGTCGTGCGTGATAGACCTA 58.258 50.000 0.00 0.00 33.04 3.08
3556 7723 0.885879 TTGTCGTGCGTGATAGACCT 59.114 50.000 0.00 0.00 33.04 3.85
3557 7724 1.705256 TTTGTCGTGCGTGATAGACC 58.295 50.000 0.00 0.00 33.04 3.85
3558 7725 2.984471 TCTTTTGTCGTGCGTGATAGAC 59.016 45.455 0.00 0.00 0.00 2.59
3559 7726 3.291809 TCTTTTGTCGTGCGTGATAGA 57.708 42.857 0.00 0.00 0.00 1.98
3560 7727 4.383774 TTTCTTTTGTCGTGCGTGATAG 57.616 40.909 0.00 0.00 0.00 2.08
3561 7728 4.797693 TTTTCTTTTGTCGTGCGTGATA 57.202 36.364 0.00 0.00 0.00 2.15
3562 7729 3.684103 TTTTCTTTTGTCGTGCGTGAT 57.316 38.095 0.00 0.00 0.00 3.06
3563 7730 3.120130 AGTTTTTCTTTTGTCGTGCGTGA 60.120 39.130 0.00 0.00 0.00 4.35
3564 7731 3.002149 CAGTTTTTCTTTTGTCGTGCGTG 60.002 43.478 0.00 0.00 0.00 5.34
3565 7732 3.168193 CAGTTTTTCTTTTGTCGTGCGT 58.832 40.909 0.00 0.00 0.00 5.24
3566 7733 3.168193 ACAGTTTTTCTTTTGTCGTGCG 58.832 40.909 0.00 0.00 0.00 5.34
3567 7734 5.331532 GCATACAGTTTTTCTTTTGTCGTGC 60.332 40.000 0.00 0.00 32.28 5.34
3568 7735 5.971202 AGCATACAGTTTTTCTTTTGTCGTG 59.029 36.000 0.00 0.00 0.00 4.35
3569 7736 6.131544 AGCATACAGTTTTTCTTTTGTCGT 57.868 33.333 0.00 0.00 0.00 4.34
3570 7737 7.534848 GTAGCATACAGTTTTTCTTTTGTCG 57.465 36.000 0.00 0.00 42.43 4.35
3586 7753 7.036220 AGAACTGTATGAACACTGTAGCATAC 58.964 38.462 19.03 19.03 41.96 2.39
3587 7754 7.170393 AGAACTGTATGAACACTGTAGCATA 57.830 36.000 0.00 2.18 31.24 3.14
3588 7755 6.042638 AGAACTGTATGAACACTGTAGCAT 57.957 37.500 0.00 3.70 31.24 3.79
3589 7756 5.468540 AGAACTGTATGAACACTGTAGCA 57.531 39.130 0.00 0.00 31.24 3.49
3590 7757 5.926542 TGAAGAACTGTATGAACACTGTAGC 59.073 40.000 0.00 0.00 31.24 3.58
3591 7758 7.371159 TCTGAAGAACTGTATGAACACTGTAG 58.629 38.462 0.00 0.00 31.24 2.74
3592 7759 7.284919 TCTGAAGAACTGTATGAACACTGTA 57.715 36.000 0.00 0.00 31.24 2.74
3593 7760 6.161855 TCTGAAGAACTGTATGAACACTGT 57.838 37.500 0.00 0.00 32.62 3.55
3594 7761 7.664082 ATTCTGAAGAACTGTATGAACACTG 57.336 36.000 0.00 0.00 36.80 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.