Multiple sequence alignment - TraesCS7B01G084100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G084100 chr7B 100.000 2972 0 0 1 2972 94811932 94808961 0.000000e+00 5489.0
1 TraesCS7B01G084100 chr7B 94.939 1225 60 2 859 2082 95046571 95045348 0.000000e+00 1917.0
2 TraesCS7B01G084100 chr7B 92.339 248 15 4 908 1152 94922136 94921890 1.700000e-92 350.0
3 TraesCS7B01G084100 chr7B 89.583 144 15 0 20 163 16178793 16178650 1.820000e-42 183.0
4 TraesCS7B01G084100 chr7B 87.248 149 15 3 538 684 94932707 94932561 1.830000e-37 167.0
5 TraesCS7B01G084100 chr7B 94.203 69 2 1 2611 2679 95045348 95045282 1.460000e-18 104.0
6 TraesCS7B01G084100 chr7D 93.662 1562 69 10 536 2079 133491662 133493211 0.000000e+00 2309.0
7 TraesCS7B01G084100 chr7D 93.610 1565 69 11 536 2082 133612836 133611285 0.000000e+00 2307.0
8 TraesCS7B01G084100 chr7D 93.522 1235 58 9 850 2079 133827095 133828312 0.000000e+00 1818.0
9 TraesCS7B01G084100 chr7D 96.923 65 2 0 2611 2675 133493214 133493278 3.130000e-20 110.0
10 TraesCS7B01G084100 chr7D 96.923 65 2 0 2611 2675 133611285 133611221 3.130000e-20 110.0
11 TraesCS7B01G084100 chr7D 95.385 65 3 0 2611 2675 133828315 133828379 1.460000e-18 104.0
12 TraesCS7B01G084100 chr7A 93.117 1569 73 14 536 2082 132412121 132410566 0.000000e+00 2266.0
13 TraesCS7B01G084100 chr7A 94.265 1238 63 5 850 2079 132618875 132620112 0.000000e+00 1886.0
14 TraesCS7B01G084100 chr7A 84.167 480 41 14 2162 2606 706428378 706428857 1.640000e-117 433.0
15 TraesCS7B01G084100 chr7A 86.084 309 28 10 2675 2972 655373118 655372814 4.780000e-83 318.0
16 TraesCS7B01G084100 chr7A 77.438 523 77 28 2115 2611 35301233 35300726 1.050000e-69 274.0
17 TraesCS7B01G084100 chr7A 77.055 523 80 26 2115 2611 35272589 35272081 6.320000e-67 265.0
18 TraesCS7B01G084100 chr7A 95.726 117 5 0 1189 1305 216416045 216416161 3.910000e-44 189.0
19 TraesCS7B01G084100 chr7A 83.951 81 12 1 147 226 176999305 176999225 3.180000e-10 76.8
20 TraesCS7B01G084100 chrUn 95.220 1025 39 2 1058 2082 429907488 429906474 0.000000e+00 1613.0
21 TraesCS7B01G084100 chrUn 77.333 525 75 27 2115 2611 201314957 201314449 1.360000e-68 270.0
22 TraesCS7B01G084100 chrUn 96.923 65 2 0 2611 2675 429906474 429906410 3.130000e-20 110.0
23 TraesCS7B01G084100 chr6B 80.846 851 133 16 1121 1971 611500191 611501011 2.500000e-180 641.0
24 TraesCS7B01G084100 chr6A 80.328 854 132 20 1121 1971 553055019 553055839 5.440000e-172 614.0
25 TraesCS7B01G084100 chr6A 83.142 261 21 9 159 408 3604904 3605152 1.790000e-52 217.0
26 TraesCS7B01G084100 chr2B 85.526 532 48 9 2115 2624 636759715 636759191 2.030000e-146 529.0
27 TraesCS7B01G084100 chr1D 85.192 520 44 13 2118 2611 188444565 188444053 1.230000e-138 503.0
28 TraesCS7B01G084100 chr1D 83.925 535 52 10 2115 2626 33580251 33580774 5.760000e-132 481.0
29 TraesCS7B01G084100 chr1D 85.176 398 34 14 157 538 469533607 469533995 4.650000e-103 385.0
30 TraesCS7B01G084100 chr1D 85.387 349 27 8 2285 2611 391288644 391288990 1.020000e-89 340.0
31 TraesCS7B01G084100 chr1D 83.206 262 24 7 149 403 458307259 458307507 3.860000e-54 222.0
32 TraesCS7B01G084100 chr1D 82.533 229 34 6 153 376 296519298 296519071 2.340000e-46 196.0
33 TraesCS7B01G084100 chr1D 92.188 128 9 1 1 128 469533180 469533306 2.350000e-41 180.0
34 TraesCS7B01G084100 chr5D 82.734 556 65 13 2078 2611 439657029 439657575 1.610000e-127 466.0
35 TraesCS7B01G084100 chr5D 86.752 234 21 4 149 382 83906994 83907217 4.920000e-63 252.0
36 TraesCS7B01G084100 chr1A 88.251 383 38 4 2115 2492 22661036 22660656 4.520000e-123 451.0
37 TraesCS7B01G084100 chr1A 87.248 298 34 4 2676 2969 520339282 520339579 1.320000e-88 337.0
38 TraesCS7B01G084100 chr1A 87.119 295 30 6 2683 2972 590838326 590838617 7.940000e-86 327.0
39 TraesCS7B01G084100 chr1A 91.919 99 8 0 4 102 556350536 556350634 3.990000e-29 139.0
40 TraesCS7B01G084100 chr3D 83.012 518 50 15 2118 2611 458297056 458296553 4.550000e-118 435.0
41 TraesCS7B01G084100 chr3D 87.541 305 30 4 2675 2972 25967186 25967489 2.190000e-91 346.0
42 TraesCS7B01G084100 chr3D 82.984 382 53 8 2115 2485 17392744 17393124 4.750000e-88 335.0
43 TraesCS7B01G084100 chr3D 85.859 99 12 2 2482 2580 17393154 17393250 1.460000e-18 104.0
44 TraesCS7B01G084100 chr2D 87.708 301 31 4 2676 2972 591378835 591378537 2.190000e-91 346.0
45 TraesCS7B01G084100 chr4B 87.333 300 34 4 2676 2972 139794113 139793815 1.020000e-89 340.0
46 TraesCS7B01G084100 chr3B 86.667 300 35 3 2676 2972 559909967 559909670 7.940000e-86 327.0
47 TraesCS7B01G084100 chr1B 86.319 307 31 6 2672 2972 654026006 654025705 1.030000e-84 324.0
48 TraesCS7B01G084100 chr1B 84.685 222 15 6 2408 2611 16462193 16462413 1.400000e-48 204.0
49 TraesCS7B01G084100 chr5B 86.780 295 32 5 2682 2972 690646866 690647157 3.700000e-84 322.0
50 TraesCS7B01G084100 chr3A 88.372 258 28 2 1 257 737373513 737373769 2.880000e-80 309.0
51 TraesCS7B01G084100 chr3A 91.753 97 7 1 443 539 737374238 737374333 1.860000e-27 134.0
52 TraesCS7B01G084100 chr2A 83.083 266 22 9 149 403 379298379 379298632 1.390000e-53 220.0
53 TraesCS7B01G084100 chr5A 97.059 34 1 0 513 546 705549549 705549582 1.150000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G084100 chr7B 94808961 94811932 2971 True 5489.0 5489 100.0000 1 2972 1 chr7B.!!$R2 2971
1 TraesCS7B01G084100 chr7B 95045282 95046571 1289 True 1010.5 1917 94.5710 859 2679 2 chr7B.!!$R5 1820
2 TraesCS7B01G084100 chr7D 133491662 133493278 1616 False 1209.5 2309 95.2925 536 2675 2 chr7D.!!$F1 2139
3 TraesCS7B01G084100 chr7D 133611221 133612836 1615 True 1208.5 2307 95.2665 536 2675 2 chr7D.!!$R1 2139
4 TraesCS7B01G084100 chr7D 133827095 133828379 1284 False 961.0 1818 94.4535 850 2675 2 chr7D.!!$F2 1825
5 TraesCS7B01G084100 chr7A 132410566 132412121 1555 True 2266.0 2266 93.1170 536 2082 1 chr7A.!!$R3 1546
6 TraesCS7B01G084100 chr7A 132618875 132620112 1237 False 1886.0 1886 94.2650 850 2079 1 chr7A.!!$F1 1229
7 TraesCS7B01G084100 chr7A 35300726 35301233 507 True 274.0 274 77.4380 2115 2611 1 chr7A.!!$R2 496
8 TraesCS7B01G084100 chr7A 35272081 35272589 508 True 265.0 265 77.0550 2115 2611 1 chr7A.!!$R1 496
9 TraesCS7B01G084100 chrUn 429906410 429907488 1078 True 861.5 1613 96.0715 1058 2675 2 chrUn.!!$R2 1617
10 TraesCS7B01G084100 chrUn 201314449 201314957 508 True 270.0 270 77.3330 2115 2611 1 chrUn.!!$R1 496
11 TraesCS7B01G084100 chr6B 611500191 611501011 820 False 641.0 641 80.8460 1121 1971 1 chr6B.!!$F1 850
12 TraesCS7B01G084100 chr6A 553055019 553055839 820 False 614.0 614 80.3280 1121 1971 1 chr6A.!!$F2 850
13 TraesCS7B01G084100 chr2B 636759191 636759715 524 True 529.0 529 85.5260 2115 2624 1 chr2B.!!$R1 509
14 TraesCS7B01G084100 chr1D 188444053 188444565 512 True 503.0 503 85.1920 2118 2611 1 chr1D.!!$R1 493
15 TraesCS7B01G084100 chr1D 33580251 33580774 523 False 481.0 481 83.9250 2115 2626 1 chr1D.!!$F1 511
16 TraesCS7B01G084100 chr1D 469533180 469533995 815 False 282.5 385 88.6820 1 538 2 chr1D.!!$F4 537
17 TraesCS7B01G084100 chr5D 439657029 439657575 546 False 466.0 466 82.7340 2078 2611 1 chr5D.!!$F2 533
18 TraesCS7B01G084100 chr3D 458296553 458297056 503 True 435.0 435 83.0120 2118 2611 1 chr3D.!!$R1 493
19 TraesCS7B01G084100 chr3D 17392744 17393250 506 False 219.5 335 84.4215 2115 2580 2 chr3D.!!$F2 465
20 TraesCS7B01G084100 chr3A 737373513 737374333 820 False 221.5 309 90.0625 1 539 2 chr3A.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 533 0.036765 TTGCGCGACTCTTATTGGGT 60.037 50.0 12.1 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2062 1.276145 GACTCACGTCACTTGTCGCC 61.276 60.0 0.0 0.0 39.98 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.817209 CGGAAGTAGAGGTGAGGGC 59.183 63.158 0.00 0.00 0.00 5.19
155 156 3.083997 GGGGAGACGAGCCACCAT 61.084 66.667 0.00 0.00 0.00 3.55
156 157 1.760875 GGGGAGACGAGCCACCATA 60.761 63.158 0.00 0.00 0.00 2.74
157 158 1.742768 GGGAGACGAGCCACCATAG 59.257 63.158 0.00 0.00 0.00 2.23
158 159 1.068250 GGAGACGAGCCACCATAGC 59.932 63.158 0.00 0.00 0.00 2.97
159 160 1.068250 GAGACGAGCCACCATAGCC 59.932 63.158 0.00 0.00 0.00 3.93
160 161 1.381872 AGACGAGCCACCATAGCCT 60.382 57.895 0.00 0.00 0.00 4.58
161 162 1.068250 GACGAGCCACCATAGCCTC 59.932 63.158 0.00 0.00 0.00 4.70
162 163 2.028190 CGAGCCACCATAGCCTCG 59.972 66.667 0.00 0.00 0.00 4.63
163 164 2.280457 GAGCCACCATAGCCTCGC 60.280 66.667 0.00 0.00 0.00 5.03
164 165 3.816367 GAGCCACCATAGCCTCGCC 62.816 68.421 0.00 0.00 0.00 5.54
166 167 4.609018 CCACCATAGCCTCGCCGG 62.609 72.222 0.00 0.00 0.00 6.13
186 187 4.719369 ACGAAGTGGACGCCGCTC 62.719 66.667 11.51 5.89 44.35 5.03
188 189 4.070552 GAAGTGGACGCCGCTCCT 62.071 66.667 11.51 0.00 44.35 3.69
189 190 4.379243 AAGTGGACGCCGCTCCTG 62.379 66.667 11.51 0.00 44.35 3.86
191 192 4.373116 GTGGACGCCGCTCCTGAA 62.373 66.667 9.42 0.00 0.00 3.02
192 193 3.621805 TGGACGCCGCTCCTGAAA 61.622 61.111 9.42 0.00 0.00 2.69
193 194 3.119096 GGACGCCGCTCCTGAAAC 61.119 66.667 0.00 0.00 0.00 2.78
194 195 3.119096 GACGCCGCTCCTGAAACC 61.119 66.667 0.00 0.00 0.00 3.27
195 196 4.699522 ACGCCGCTCCTGAAACCC 62.700 66.667 0.00 0.00 0.00 4.11
196 197 4.394712 CGCCGCTCCTGAAACCCT 62.395 66.667 0.00 0.00 0.00 4.34
197 198 2.987125 GCCGCTCCTGAAACCCTA 59.013 61.111 0.00 0.00 0.00 3.53
198 199 1.153349 GCCGCTCCTGAAACCCTAG 60.153 63.158 0.00 0.00 0.00 3.02
199 200 1.153349 CCGCTCCTGAAACCCTAGC 60.153 63.158 0.00 0.00 0.00 3.42
200 201 1.153349 CGCTCCTGAAACCCTAGCC 60.153 63.158 0.00 0.00 0.00 3.93
201 202 1.899437 CGCTCCTGAAACCCTAGCCA 61.899 60.000 0.00 0.00 0.00 4.75
202 203 0.393132 GCTCCTGAAACCCTAGCCAC 60.393 60.000 0.00 0.00 0.00 5.01
203 204 0.108138 CTCCTGAAACCCTAGCCACG 60.108 60.000 0.00 0.00 0.00 4.94
204 205 1.078426 CCTGAAACCCTAGCCACGG 60.078 63.158 0.00 0.00 0.00 4.94
205 206 1.745489 CTGAAACCCTAGCCACGGC 60.745 63.158 0.00 0.00 42.33 5.68
222 223 3.522731 CTGAGGGTCGGGAGCGAG 61.523 72.222 0.00 0.00 0.00 5.03
237 238 2.835431 GAGCGCAGGAGGCCTCTA 60.835 66.667 31.36 0.00 40.31 2.43
238 239 2.837291 AGCGCAGGAGGCCTCTAG 60.837 66.667 31.36 23.60 40.31 2.43
239 240 4.600576 GCGCAGGAGGCCTCTAGC 62.601 72.222 31.36 29.85 40.31 3.42
240 241 3.150335 CGCAGGAGGCCTCTAGCA 61.150 66.667 33.52 0.00 46.50 3.49
241 242 2.725312 CGCAGGAGGCCTCTAGCAA 61.725 63.158 33.52 0.00 46.50 3.91
242 243 1.153269 GCAGGAGGCCTCTAGCAAC 60.153 63.158 31.59 17.62 46.50 4.17
243 244 1.142748 CAGGAGGCCTCTAGCAACG 59.857 63.158 31.36 9.10 46.50 4.10
244 245 1.000486 AGGAGGCCTCTAGCAACGA 60.000 57.895 31.36 0.00 46.50 3.85
245 246 0.614979 AGGAGGCCTCTAGCAACGAA 60.615 55.000 31.36 0.00 46.50 3.85
246 247 0.466124 GGAGGCCTCTAGCAACGAAT 59.534 55.000 31.36 0.00 46.50 3.34
247 248 1.134371 GGAGGCCTCTAGCAACGAATT 60.134 52.381 31.36 0.00 46.50 2.17
248 249 2.633488 GAGGCCTCTAGCAACGAATTT 58.367 47.619 26.25 0.00 46.50 1.82
249 250 2.352960 GAGGCCTCTAGCAACGAATTTG 59.647 50.000 26.25 0.00 46.50 2.32
250 251 1.401905 GGCCTCTAGCAACGAATTTGG 59.598 52.381 0.00 0.00 46.50 3.28
251 252 2.356135 GCCTCTAGCAACGAATTTGGA 58.644 47.619 0.00 0.00 42.97 3.53
252 253 2.352960 GCCTCTAGCAACGAATTTGGAG 59.647 50.000 0.00 0.00 42.97 3.86
253 254 2.939103 CCTCTAGCAACGAATTTGGAGG 59.061 50.000 0.00 0.00 35.85 4.30
254 255 2.939103 CTCTAGCAACGAATTTGGAGGG 59.061 50.000 0.00 0.00 35.51 4.30
255 256 2.569853 TCTAGCAACGAATTTGGAGGGA 59.430 45.455 0.00 0.00 35.51 4.20
256 257 2.514458 AGCAACGAATTTGGAGGGAT 57.486 45.000 0.00 0.00 35.51 3.85
257 258 2.094675 AGCAACGAATTTGGAGGGATG 58.905 47.619 0.00 0.00 35.51 3.51
258 259 1.134946 GCAACGAATTTGGAGGGATGG 59.865 52.381 0.00 0.00 35.51 3.51
259 260 1.750778 CAACGAATTTGGAGGGATGGG 59.249 52.381 0.00 0.00 0.00 4.00
260 261 1.295020 ACGAATTTGGAGGGATGGGA 58.705 50.000 0.00 0.00 0.00 4.37
261 262 1.212935 ACGAATTTGGAGGGATGGGAG 59.787 52.381 0.00 0.00 0.00 4.30
262 263 1.477558 CGAATTTGGAGGGATGGGAGG 60.478 57.143 0.00 0.00 0.00 4.30
263 264 1.852965 GAATTTGGAGGGATGGGAGGA 59.147 52.381 0.00 0.00 0.00 3.71
264 265 2.000290 ATTTGGAGGGATGGGAGGAA 58.000 50.000 0.00 0.00 0.00 3.36
265 266 1.298953 TTTGGAGGGATGGGAGGAAG 58.701 55.000 0.00 0.00 0.00 3.46
266 267 0.624500 TTGGAGGGATGGGAGGAAGG 60.625 60.000 0.00 0.00 0.00 3.46
267 268 1.318380 GGAGGGATGGGAGGAAGGA 59.682 63.158 0.00 0.00 0.00 3.36
268 269 0.766288 GGAGGGATGGGAGGAAGGAG 60.766 65.000 0.00 0.00 0.00 3.69
269 270 1.385206 AGGGATGGGAGGAAGGAGC 60.385 63.158 0.00 0.00 0.00 4.70
270 271 1.694169 GGGATGGGAGGAAGGAGCA 60.694 63.158 0.00 0.00 0.00 4.26
271 272 1.704007 GGGATGGGAGGAAGGAGCAG 61.704 65.000 0.00 0.00 0.00 4.24
272 273 0.692419 GGATGGGAGGAAGGAGCAGA 60.692 60.000 0.00 0.00 0.00 4.26
273 274 0.758123 GATGGGAGGAAGGAGCAGAG 59.242 60.000 0.00 0.00 0.00 3.35
274 275 1.344191 ATGGGAGGAAGGAGCAGAGC 61.344 60.000 0.00 0.00 0.00 4.09
275 276 2.498726 GGAGGAAGGAGCAGAGCG 59.501 66.667 0.00 0.00 0.00 5.03
276 277 2.055042 GGAGGAAGGAGCAGAGCGA 61.055 63.158 0.00 0.00 0.00 4.93
277 278 1.437160 GAGGAAGGAGCAGAGCGAG 59.563 63.158 0.00 0.00 0.00 5.03
278 279 2.015227 GAGGAAGGAGCAGAGCGAGG 62.015 65.000 0.00 0.00 0.00 4.63
279 280 2.498726 GAAGGAGCAGAGCGAGGG 59.501 66.667 0.00 0.00 0.00 4.30
280 281 3.080121 AAGGAGCAGAGCGAGGGG 61.080 66.667 0.00 0.00 0.00 4.79
281 282 3.608759 AAGGAGCAGAGCGAGGGGA 62.609 63.158 0.00 0.00 0.00 4.81
282 283 3.535962 GGAGCAGAGCGAGGGGAG 61.536 72.222 0.00 0.00 0.00 4.30
283 284 3.535962 GAGCAGAGCGAGGGGAGG 61.536 72.222 0.00 0.00 0.00 4.30
284 285 4.390556 AGCAGAGCGAGGGGAGGT 62.391 66.667 0.00 0.00 0.00 3.85
285 286 3.844090 GCAGAGCGAGGGGAGGTC 61.844 72.222 0.00 0.00 36.46 3.85
286 287 3.522731 CAGAGCGAGGGGAGGTCG 61.523 72.222 0.00 0.00 40.65 4.79
287 288 4.049817 AGAGCGAGGGGAGGTCGT 62.050 66.667 0.00 0.00 40.65 4.34
288 289 2.124403 GAGCGAGGGGAGGTCGTA 60.124 66.667 0.00 0.00 39.69 3.43
289 290 2.124236 AGCGAGGGGAGGTCGTAG 60.124 66.667 0.00 0.00 39.69 3.51
290 291 3.217743 GCGAGGGGAGGTCGTAGG 61.218 72.222 0.00 0.00 39.69 3.18
291 292 2.274760 CGAGGGGAGGTCGTAGGT 59.725 66.667 0.00 0.00 32.62 3.08
292 293 1.823041 CGAGGGGAGGTCGTAGGTC 60.823 68.421 0.00 0.00 32.62 3.85
293 294 1.614160 GAGGGGAGGTCGTAGGTCT 59.386 63.158 0.00 0.00 0.00 3.85
294 295 0.752376 GAGGGGAGGTCGTAGGTCTG 60.752 65.000 0.00 0.00 0.00 3.51
295 296 2.424733 GGGGAGGTCGTAGGTCTGC 61.425 68.421 0.00 0.00 0.00 4.26
296 297 2.424733 GGGAGGTCGTAGGTCTGCC 61.425 68.421 4.22 4.22 32.93 4.85
297 298 1.681327 GGAGGTCGTAGGTCTGCCA 60.681 63.158 0.00 0.00 37.19 4.92
298 299 1.511768 GAGGTCGTAGGTCTGCCAC 59.488 63.158 0.00 0.00 37.19 5.01
322 323 3.524606 TCGGGACTCGCCGGAATC 61.525 66.667 5.05 0.00 42.39 2.52
323 324 4.925576 CGGGACTCGCCGGAATCG 62.926 72.222 5.05 0.00 39.22 3.34
334 335 2.974698 GGAATCGGCCGGCATGAG 60.975 66.667 30.85 16.24 0.00 2.90
335 336 2.203070 GAATCGGCCGGCATGAGT 60.203 61.111 30.85 24.25 0.00 3.41
336 337 2.514592 AATCGGCCGGCATGAGTG 60.515 61.111 30.85 10.20 0.00 3.51
337 338 4.552365 ATCGGCCGGCATGAGTGG 62.552 66.667 30.85 7.71 0.00 4.00
365 366 4.816984 GAGGAGTCGCGGGGAGGA 62.817 72.222 6.13 0.00 0.00 3.71
366 367 4.824515 AGGAGTCGCGGGGAGGAG 62.825 72.222 6.13 0.00 0.00 3.69
367 368 4.816984 GGAGTCGCGGGGAGGAGA 62.817 72.222 6.13 0.00 0.00 3.71
368 369 3.213402 GAGTCGCGGGGAGGAGAG 61.213 72.222 6.13 0.00 0.00 3.20
369 370 3.700831 GAGTCGCGGGGAGGAGAGA 62.701 68.421 6.13 0.00 0.00 3.10
370 371 3.213402 GTCGCGGGGAGGAGAGAG 61.213 72.222 6.13 0.00 0.00 3.20
371 372 4.507916 TCGCGGGGAGGAGAGAGG 62.508 72.222 6.13 0.00 0.00 3.69
374 375 4.150454 CGGGGAGGAGAGAGGGCT 62.150 72.222 0.00 0.00 0.00 5.19
375 376 2.123033 GGGGAGGAGAGAGGGCTC 60.123 72.222 0.00 0.00 41.62 4.70
376 377 2.520741 GGGAGGAGAGAGGGCTCG 60.521 72.222 0.00 0.00 45.98 5.03
377 378 3.223589 GGAGGAGAGAGGGCTCGC 61.224 72.222 0.00 0.00 45.98 5.03
378 379 2.441164 GAGGAGAGAGGGCTCGCA 60.441 66.667 0.00 0.00 45.98 5.10
379 380 2.038007 AGGAGAGAGGGCTCGCAA 59.962 61.111 0.00 0.00 45.98 4.85
380 381 2.015227 GAGGAGAGAGGGCTCGCAAG 62.015 65.000 0.00 0.00 45.98 4.01
381 382 2.055042 GGAGAGAGGGCTCGCAAGA 61.055 63.158 0.00 0.00 45.98 3.02
382 383 1.140804 GAGAGAGGGCTCGCAAGAC 59.859 63.158 0.00 0.00 45.98 3.01
383 384 1.599606 GAGAGAGGGCTCGCAAGACA 61.600 60.000 0.00 0.00 45.98 3.41
384 385 1.188219 AGAGAGGGCTCGCAAGACAA 61.188 55.000 0.00 0.00 45.98 3.18
385 386 0.739112 GAGAGGGCTCGCAAGACAAG 60.739 60.000 0.00 0.00 45.01 3.16
386 387 1.188219 AGAGGGCTCGCAAGACAAGA 61.188 55.000 0.00 0.00 45.01 3.02
387 388 0.739112 GAGGGCTCGCAAGACAAGAG 60.739 60.000 0.00 0.00 45.01 2.85
388 389 1.188219 AGGGCTCGCAAGACAAGAGA 61.188 55.000 0.00 0.00 45.01 3.10
389 390 0.739112 GGGCTCGCAAGACAAGAGAG 60.739 60.000 0.00 0.00 45.01 3.20
390 391 0.244994 GGCTCGCAAGACAAGAGAGA 59.755 55.000 0.00 0.00 45.01 3.10
391 392 1.627879 GCTCGCAAGACAAGAGAGAG 58.372 55.000 0.00 0.00 45.01 3.20
392 393 1.201181 GCTCGCAAGACAAGAGAGAGA 59.799 52.381 0.00 0.00 45.01 3.10
393 394 2.731968 GCTCGCAAGACAAGAGAGAGAG 60.732 54.545 0.00 0.00 45.01 3.20
394 395 1.815613 TCGCAAGACAAGAGAGAGAGG 59.184 52.381 0.00 0.00 45.01 3.69
395 396 1.815613 CGCAAGACAAGAGAGAGAGGA 59.184 52.381 0.00 0.00 43.02 3.71
396 397 2.159393 CGCAAGACAAGAGAGAGAGGAG 60.159 54.545 0.00 0.00 43.02 3.69
397 398 2.166254 GCAAGACAAGAGAGAGAGGAGG 59.834 54.545 0.00 0.00 0.00 4.30
398 399 2.143876 AGACAAGAGAGAGAGGAGGC 57.856 55.000 0.00 0.00 0.00 4.70
399 400 1.640670 AGACAAGAGAGAGAGGAGGCT 59.359 52.381 0.00 0.00 0.00 4.58
400 401 2.042979 AGACAAGAGAGAGAGGAGGCTT 59.957 50.000 0.00 0.00 0.00 4.35
401 402 2.166254 GACAAGAGAGAGAGGAGGCTTG 59.834 54.545 0.00 0.00 38.81 4.01
402 403 1.134729 CAAGAGAGAGAGGAGGCTTGC 60.135 57.143 0.00 0.00 0.00 4.01
403 404 1.037030 AGAGAGAGAGGAGGCTTGCG 61.037 60.000 0.00 0.00 0.00 4.85
404 405 1.304879 AGAGAGAGGAGGCTTGCGT 60.305 57.895 0.00 0.00 0.00 5.24
405 406 1.153667 GAGAGAGGAGGCTTGCGTG 60.154 63.158 0.00 0.00 0.00 5.34
406 407 1.882989 GAGAGAGGAGGCTTGCGTGT 61.883 60.000 0.00 0.00 0.00 4.49
407 408 1.739562 GAGAGGAGGCTTGCGTGTG 60.740 63.158 0.00 0.00 0.00 3.82
408 409 2.159819 GAGAGGAGGCTTGCGTGTGA 62.160 60.000 0.00 0.00 0.00 3.58
409 410 1.739562 GAGGAGGCTTGCGTGTGAG 60.740 63.158 0.00 0.00 0.00 3.51
410 411 2.159819 GAGGAGGCTTGCGTGTGAGA 62.160 60.000 0.00 0.00 0.00 3.27
411 412 1.739562 GGAGGCTTGCGTGTGAGAG 60.740 63.158 0.00 0.00 0.00 3.20
412 413 1.739562 GAGGCTTGCGTGTGAGAGG 60.740 63.158 0.00 0.00 0.00 3.69
413 414 2.159819 GAGGCTTGCGTGTGAGAGGA 62.160 60.000 0.00 0.00 0.00 3.71
414 415 1.078848 GGCTTGCGTGTGAGAGGAT 60.079 57.895 0.00 0.00 0.00 3.24
415 416 1.086634 GGCTTGCGTGTGAGAGGATC 61.087 60.000 0.00 0.00 0.00 3.36
416 417 0.390340 GCTTGCGTGTGAGAGGATCA 60.390 55.000 0.00 0.00 37.82 2.92
417 418 1.941209 GCTTGCGTGTGAGAGGATCAA 60.941 52.381 0.00 0.00 40.43 2.57
418 419 2.625737 CTTGCGTGTGAGAGGATCAAT 58.374 47.619 0.00 0.00 40.43 2.57
419 420 2.014335 TGCGTGTGAGAGGATCAATG 57.986 50.000 0.00 0.00 40.43 2.82
420 421 1.293924 GCGTGTGAGAGGATCAATGG 58.706 55.000 0.00 0.00 40.43 3.16
421 422 1.945387 CGTGTGAGAGGATCAATGGG 58.055 55.000 0.00 0.00 40.43 4.00
422 423 1.208052 CGTGTGAGAGGATCAATGGGT 59.792 52.381 0.00 0.00 40.43 4.51
423 424 2.430694 CGTGTGAGAGGATCAATGGGTA 59.569 50.000 0.00 0.00 40.43 3.69
424 425 3.491619 CGTGTGAGAGGATCAATGGGTAG 60.492 52.174 0.00 0.00 40.43 3.18
425 426 3.706594 GTGTGAGAGGATCAATGGGTAGA 59.293 47.826 0.00 0.00 40.43 2.59
426 427 4.346418 GTGTGAGAGGATCAATGGGTAGAT 59.654 45.833 0.00 0.00 40.43 1.98
427 428 4.346127 TGTGAGAGGATCAATGGGTAGATG 59.654 45.833 0.00 0.00 40.43 2.90
428 429 3.326006 TGAGAGGATCAATGGGTAGATGC 59.674 47.826 0.00 0.00 37.82 3.91
429 430 2.301296 AGAGGATCAATGGGTAGATGCG 59.699 50.000 0.00 0.00 37.62 4.73
430 431 1.349026 AGGATCAATGGGTAGATGCGG 59.651 52.381 0.00 0.00 37.62 5.69
431 432 1.347707 GGATCAATGGGTAGATGCGGA 59.652 52.381 0.00 0.00 0.00 5.54
432 433 2.026822 GGATCAATGGGTAGATGCGGAT 60.027 50.000 0.00 0.00 0.00 4.18
433 434 3.560025 GGATCAATGGGTAGATGCGGATT 60.560 47.826 0.00 0.00 0.00 3.01
434 435 3.576078 TCAATGGGTAGATGCGGATTT 57.424 42.857 0.00 0.00 0.00 2.17
435 436 3.897239 TCAATGGGTAGATGCGGATTTT 58.103 40.909 0.00 0.00 0.00 1.82
436 437 4.277476 TCAATGGGTAGATGCGGATTTTT 58.723 39.130 0.00 0.00 0.00 1.94
454 455 2.871096 TTTAGATTGGGTCCAAGCGT 57.129 45.000 11.66 4.34 45.72 5.07
455 456 2.871096 TTAGATTGGGTCCAAGCGTT 57.129 45.000 11.66 0.00 45.72 4.84
456 457 2.871096 TAGATTGGGTCCAAGCGTTT 57.129 45.000 11.66 0.00 45.72 3.60
457 458 1.995376 AGATTGGGTCCAAGCGTTTT 58.005 45.000 11.66 0.00 45.72 2.43
458 459 2.316108 AGATTGGGTCCAAGCGTTTTT 58.684 42.857 11.66 0.00 45.72 1.94
459 460 3.492337 AGATTGGGTCCAAGCGTTTTTA 58.508 40.909 11.66 0.00 45.72 1.52
460 461 3.892588 AGATTGGGTCCAAGCGTTTTTAA 59.107 39.130 11.66 0.00 45.72 1.52
461 462 3.439895 TTGGGTCCAAGCGTTTTTAAC 57.560 42.857 0.00 0.00 0.00 2.01
462 463 1.682323 TGGGTCCAAGCGTTTTTAACC 59.318 47.619 0.00 0.23 0.00 2.85
463 464 1.958579 GGGTCCAAGCGTTTTTAACCT 59.041 47.619 7.01 0.00 0.00 3.50
464 465 2.363038 GGGTCCAAGCGTTTTTAACCTT 59.637 45.455 7.01 0.00 0.00 3.50
465 466 3.181473 GGGTCCAAGCGTTTTTAACCTTT 60.181 43.478 7.01 0.00 0.00 3.11
466 467 4.046462 GGTCCAAGCGTTTTTAACCTTTC 58.954 43.478 1.41 0.00 0.00 2.62
467 468 4.046462 GTCCAAGCGTTTTTAACCTTTCC 58.954 43.478 0.00 0.00 0.00 3.13
468 469 3.068448 TCCAAGCGTTTTTAACCTTTCCC 59.932 43.478 0.00 0.00 0.00 3.97
469 470 3.386486 CAAGCGTTTTTAACCTTTCCCC 58.614 45.455 0.00 0.00 0.00 4.81
470 471 2.953453 AGCGTTTTTAACCTTTCCCCT 58.047 42.857 0.00 0.00 0.00 4.79
471 472 3.302161 AGCGTTTTTAACCTTTCCCCTT 58.698 40.909 0.00 0.00 0.00 3.95
472 473 3.069016 AGCGTTTTTAACCTTTCCCCTTG 59.931 43.478 0.00 0.00 0.00 3.61
473 474 3.800949 GCGTTTTTAACCTTTCCCCTTGG 60.801 47.826 0.00 0.00 0.00 3.61
474 475 3.735591 GTTTTTAACCTTTCCCCTTGGC 58.264 45.455 0.00 0.00 0.00 4.52
475 476 2.777459 TTTAACCTTTCCCCTTGGCA 57.223 45.000 0.00 0.00 0.00 4.92
476 477 2.003937 TTAACCTTTCCCCTTGGCAC 57.996 50.000 0.00 0.00 0.00 5.01
477 478 0.854218 TAACCTTTCCCCTTGGCACA 59.146 50.000 0.00 0.00 0.00 4.57
478 479 0.469892 AACCTTTCCCCTTGGCACAG 60.470 55.000 0.00 0.00 42.39 3.66
479 480 1.153756 CCTTTCCCCTTGGCACAGT 59.846 57.895 0.00 0.00 42.39 3.55
480 481 0.404040 CCTTTCCCCTTGGCACAGTA 59.596 55.000 0.00 0.00 42.39 2.74
481 482 1.203001 CCTTTCCCCTTGGCACAGTAA 60.203 52.381 0.00 0.00 42.39 2.24
482 483 2.593026 CTTTCCCCTTGGCACAGTAAA 58.407 47.619 0.00 0.00 42.39 2.01
483 484 2.757894 TTCCCCTTGGCACAGTAAAA 57.242 45.000 0.00 0.00 42.39 1.52
484 485 2.990740 TCCCCTTGGCACAGTAAAAT 57.009 45.000 0.00 0.00 42.39 1.82
485 486 2.802719 TCCCCTTGGCACAGTAAAATC 58.197 47.619 0.00 0.00 42.39 2.17
486 487 1.472480 CCCCTTGGCACAGTAAAATCG 59.528 52.381 0.00 0.00 42.39 3.34
487 488 2.432444 CCCTTGGCACAGTAAAATCGA 58.568 47.619 0.00 0.00 42.39 3.59
488 489 3.016736 CCCTTGGCACAGTAAAATCGAT 58.983 45.455 0.00 0.00 42.39 3.59
489 490 3.181497 CCCTTGGCACAGTAAAATCGATG 60.181 47.826 0.00 0.00 42.39 3.84
490 491 3.440173 CCTTGGCACAGTAAAATCGATGT 59.560 43.478 0.00 0.00 42.39 3.06
491 492 4.406069 CTTGGCACAGTAAAATCGATGTG 58.594 43.478 9.66 9.66 44.58 3.21
492 493 2.746904 TGGCACAGTAAAATCGATGTGG 59.253 45.455 14.51 0.00 42.56 4.17
493 494 2.785679 GCACAGTAAAATCGATGTGGC 58.214 47.619 14.51 5.39 42.56 5.01
494 495 2.161410 GCACAGTAAAATCGATGTGGCA 59.839 45.455 14.51 0.00 42.56 4.92
495 496 3.747193 CACAGTAAAATCGATGTGGCAC 58.253 45.455 11.55 11.55 39.45 5.01
496 497 3.188254 CACAGTAAAATCGATGTGGCACA 59.812 43.478 24.36 24.36 39.45 4.57
497 498 3.436704 ACAGTAAAATCGATGTGGCACAG 59.563 43.478 26.04 13.35 41.80 3.66
498 499 3.009723 AGTAAAATCGATGTGGCACAGG 58.990 45.455 26.04 19.21 41.80 4.00
499 500 1.909700 AAAATCGATGTGGCACAGGT 58.090 45.000 26.04 10.23 41.80 4.00
500 501 1.167851 AAATCGATGTGGCACAGGTG 58.832 50.000 26.04 16.94 41.80 4.00
501 502 0.324614 AATCGATGTGGCACAGGTGA 59.675 50.000 26.04 21.31 41.80 4.02
502 503 0.107993 ATCGATGTGGCACAGGTGAG 60.108 55.000 26.04 14.03 41.80 3.51
503 504 1.742880 CGATGTGGCACAGGTGAGG 60.743 63.158 26.04 7.16 41.80 3.86
504 505 1.679311 GATGTGGCACAGGTGAGGA 59.321 57.895 26.04 0.00 41.80 3.71
505 506 0.392193 GATGTGGCACAGGTGAGGAG 60.392 60.000 26.04 0.00 41.80 3.69
506 507 1.845627 ATGTGGCACAGGTGAGGAGG 61.846 60.000 26.04 0.00 41.80 4.30
507 508 3.640407 TGGCACAGGTGAGGAGGC 61.640 66.667 3.10 0.00 0.00 4.70
508 509 4.767255 GGCACAGGTGAGGAGGCG 62.767 72.222 3.10 0.00 0.00 5.52
510 511 4.767255 CACAGGTGAGGAGGCGCC 62.767 72.222 21.89 21.89 38.73 6.53
512 513 3.790437 CAGGTGAGGAGGCGCCAT 61.790 66.667 31.54 14.66 40.91 4.40
513 514 3.011517 AGGTGAGGAGGCGCCATT 61.012 61.111 31.54 13.74 40.91 3.16
514 515 2.044946 GGTGAGGAGGCGCCATTT 60.045 61.111 31.54 13.31 40.02 2.32
515 516 2.409870 GGTGAGGAGGCGCCATTTG 61.410 63.158 31.54 0.00 40.02 2.32
516 517 2.751436 TGAGGAGGCGCCATTTGC 60.751 61.111 31.54 14.08 40.02 3.68
525 526 2.870372 GCCATTTGCGCGACTCTT 59.130 55.556 12.10 0.00 0.00 2.85
526 527 2.086510 GCCATTTGCGCGACTCTTA 58.913 52.632 12.10 0.00 0.00 2.10
527 528 0.657840 GCCATTTGCGCGACTCTTAT 59.342 50.000 12.10 0.00 0.00 1.73
528 529 1.064060 GCCATTTGCGCGACTCTTATT 59.936 47.619 12.10 0.00 0.00 1.40
529 530 2.708514 CCATTTGCGCGACTCTTATTG 58.291 47.619 12.10 0.00 0.00 1.90
530 531 2.539547 CCATTTGCGCGACTCTTATTGG 60.540 50.000 12.10 0.82 0.00 3.16
531 532 1.083489 TTTGCGCGACTCTTATTGGG 58.917 50.000 12.10 0.00 0.00 4.12
532 533 0.036765 TTGCGCGACTCTTATTGGGT 60.037 50.000 12.10 0.00 0.00 4.51
533 534 0.036765 TGCGCGACTCTTATTGGGTT 60.037 50.000 12.10 0.00 0.00 4.11
534 535 1.084289 GCGCGACTCTTATTGGGTTT 58.916 50.000 12.10 0.00 0.00 3.27
587 589 1.270625 ACACGCTAGCAGCCAAAAGTA 60.271 47.619 16.45 0.00 38.18 2.24
588 590 2.009774 CACGCTAGCAGCCAAAAGTAT 58.990 47.619 16.45 0.00 38.18 2.12
618 621 1.226888 CGAATCGAGGGGTCGAACC 60.227 63.158 12.37 12.37 45.62 3.62
625 628 2.112297 GGGGTCGAACCAGCACAA 59.888 61.111 23.64 0.00 41.02 3.33
627 630 1.525077 GGGTCGAACCAGCACAACA 60.525 57.895 16.61 0.00 41.02 3.33
632 635 1.701545 CGAACCAGCACAACACACGT 61.702 55.000 0.00 0.00 0.00 4.49
694 697 4.657969 GGATAGATAGCTAATGAGGCCCAT 59.342 45.833 0.00 0.00 36.99 4.00
705 708 2.599597 GGCCCATCTGACAGCCAT 59.400 61.111 8.99 0.00 45.07 4.40
710 713 2.487805 GCCCATCTGACAGCCATTCATA 60.488 50.000 0.00 0.00 0.00 2.15
758 762 2.562912 GTTCACCACATGCCAGCG 59.437 61.111 0.00 0.00 0.00 5.18
771 775 1.898574 CCAGCGGGCAAAAGTGAGT 60.899 57.895 0.00 0.00 0.00 3.41
774 778 1.812571 CAGCGGGCAAAAGTGAGTTAT 59.187 47.619 0.00 0.00 0.00 1.89
806 810 2.357034 GCGGTCGAAGGAGCACAA 60.357 61.111 0.00 0.00 40.71 3.33
832 836 1.894282 GGGGCTCTAGAATTGCGGC 60.894 63.158 0.00 0.00 0.00 6.53
991 1020 4.216411 TCTTCCAAATCTAAACCCCTCG 57.784 45.455 0.00 0.00 0.00 4.63
1053 1089 2.586079 GCGCTCGCCTCAAGCATA 60.586 61.111 0.00 0.00 44.04 3.14
1065 1101 3.664025 AAGCATAGCAGCCGCGTCA 62.664 57.895 4.92 0.00 45.49 4.35
2004 2074 1.227556 AGTGGTGGCGACAAGTGAC 60.228 57.895 0.00 0.00 46.06 3.67
2021 2091 1.079819 ACGTGAGTCCAATCCGCTG 60.080 57.895 0.00 0.00 44.19 5.18
2059 2129 6.469410 CCAAGAGTGTATTGGGTACAACTAA 58.531 40.000 0.00 0.00 44.52 2.24
2063 2133 8.370266 AGAGTGTATTGGGTACAACTAATACA 57.630 34.615 10.98 10.98 44.52 2.29
2097 2167 9.137459 AGTGCATACATCTATATCTATACCACC 57.863 37.037 0.00 0.00 0.00 4.61
2113 2183 9.317827 TCTATACCACCATATAGGGTAAGAAAC 57.682 37.037 9.11 0.00 43.89 2.78
2149 2225 7.931578 TGAAATAATAACCGTTGGATGAAGT 57.068 32.000 0.00 0.00 0.00 3.01
2153 2229 5.622770 AATAACCGTTGGATGAAGTTGAC 57.377 39.130 0.00 0.00 0.00 3.18
2181 2257 3.442273 GGTAGAAACATGGCAAATCCGAA 59.558 43.478 0.00 0.00 37.80 4.30
2196 2273 3.342377 TCCGAATGTTGCTGACCATTA 57.658 42.857 0.00 0.00 0.00 1.90
2197 2274 3.680490 TCCGAATGTTGCTGACCATTAA 58.320 40.909 0.00 0.00 0.00 1.40
2206 2283 5.122239 TGTTGCTGACCATTAAATCTTCTCG 59.878 40.000 0.00 0.00 0.00 4.04
2229 2306 3.618690 ACTTCACTAGATTCTGCCACC 57.381 47.619 0.00 0.00 0.00 4.61
2237 2314 1.630369 AGATTCTGCCACCTGTGCTAA 59.370 47.619 0.00 0.00 0.00 3.09
2249 2326 5.112686 CACCTGTGCTAACTAGAAGATTCC 58.887 45.833 0.00 0.00 0.00 3.01
2270 2347 2.676342 CGTGGTTGGACTTAAGCCATAC 59.324 50.000 16.21 15.46 34.90 2.39
2389 2763 9.162764 TCATTTTTACTCTGTATTCAAGGCTAC 57.837 33.333 0.00 0.00 0.00 3.58
2392 2766 4.111375 ACTCTGTATTCAAGGCTACGTG 57.889 45.455 0.00 0.00 0.00 4.49
2469 2843 7.934120 GCCAGAATAGATACCTAGACAAAACAT 59.066 37.037 0.00 0.00 0.00 2.71
2557 2962 7.523293 ACAACAACAATATGTCCATCTTTGA 57.477 32.000 8.86 0.00 31.81 2.69
2558 2963 7.370383 ACAACAACAATATGTCCATCTTTGAC 58.630 34.615 8.86 0.00 31.81 3.18
2642 3051 9.811995 AATAGTTCGTATATGAGCTTGTGTTTA 57.188 29.630 15.47 0.00 31.48 2.01
2683 3092 8.665643 AATAAAATATGTAAATCGGACGTGGA 57.334 30.769 0.00 0.00 0.00 4.02
2684 3093 6.598753 AAAATATGTAAATCGGACGTGGAG 57.401 37.500 0.00 0.00 0.00 3.86
2685 3094 4.931661 ATATGTAAATCGGACGTGGAGT 57.068 40.909 0.00 0.00 0.00 3.85
2686 3095 3.604875 ATGTAAATCGGACGTGGAGTT 57.395 42.857 0.00 0.00 0.00 3.01
2687 3096 3.389925 TGTAAATCGGACGTGGAGTTT 57.610 42.857 0.00 0.00 0.00 2.66
2688 3097 3.319755 TGTAAATCGGACGTGGAGTTTC 58.680 45.455 0.00 0.00 0.00 2.78
2689 3098 2.833631 AAATCGGACGTGGAGTTTCT 57.166 45.000 0.00 0.00 0.00 2.52
2690 3099 2.080286 AATCGGACGTGGAGTTTCTG 57.920 50.000 0.00 0.00 0.00 3.02
2691 3100 0.389948 ATCGGACGTGGAGTTTCTGC 60.390 55.000 0.00 0.00 0.00 4.26
2692 3101 1.006102 CGGACGTGGAGTTTCTGCT 60.006 57.895 0.00 0.00 0.00 4.24
2693 3102 1.009389 CGGACGTGGAGTTTCTGCTC 61.009 60.000 0.00 0.00 34.89 4.26
2699 3108 2.436824 GAGTTTCTGCTCCCGGGC 60.437 66.667 18.49 5.48 0.00 6.13
2700 3109 2.930562 AGTTTCTGCTCCCGGGCT 60.931 61.111 18.49 0.25 0.00 5.19
2701 3110 2.436824 GTTTCTGCTCCCGGGCTC 60.437 66.667 18.49 10.53 0.00 4.70
2702 3111 2.927856 TTTCTGCTCCCGGGCTCA 60.928 61.111 18.49 15.04 0.00 4.26
2703 3112 2.300967 TTTCTGCTCCCGGGCTCAT 61.301 57.895 18.49 0.00 0.00 2.90
2704 3113 2.257409 TTTCTGCTCCCGGGCTCATC 62.257 60.000 18.49 2.79 0.00 2.92
2705 3114 3.160047 CTGCTCCCGGGCTCATCT 61.160 66.667 18.49 0.00 0.00 2.90
2706 3115 3.457625 CTGCTCCCGGGCTCATCTG 62.458 68.421 18.49 0.27 0.00 2.90
2707 3116 4.925861 GCTCCCGGGCTCATCTGC 62.926 72.222 18.49 7.22 0.00 4.26
2708 3117 3.473647 CTCCCGGGCTCATCTGCA 61.474 66.667 18.49 0.00 34.04 4.41
2709 3118 3.746949 CTCCCGGGCTCATCTGCAC 62.747 68.421 18.49 0.00 34.04 4.57
2710 3119 4.864334 CCCGGGCTCATCTGCACC 62.864 72.222 8.08 0.00 31.60 5.01
2711 3120 4.864334 CCGGGCTCATCTGCACCC 62.864 72.222 0.00 0.00 39.12 4.61
2716 3125 3.790437 CTCATCTGCACCCGCCCT 61.790 66.667 0.00 0.00 37.32 5.19
2717 3126 3.746949 CTCATCTGCACCCGCCCTC 62.747 68.421 0.00 0.00 37.32 4.30
2718 3127 4.100084 CATCTGCACCCGCCCTCA 62.100 66.667 0.00 0.00 37.32 3.86
2719 3128 3.790437 ATCTGCACCCGCCCTCAG 61.790 66.667 0.00 0.00 37.32 3.35
2723 3132 4.344865 GCACCCGCCCTCAGGAAA 62.345 66.667 0.00 0.00 33.47 3.13
2724 3133 2.434331 CACCCGCCCTCAGGAAAA 59.566 61.111 0.00 0.00 33.47 2.29
2725 3134 1.228429 CACCCGCCCTCAGGAAAAA 60.228 57.895 0.00 0.00 33.47 1.94
2792 3201 6.724694 TTTTTGTGGCAGATAATTTGATGC 57.275 33.333 0.00 0.00 37.95 3.91
2793 3202 3.696281 TGTGGCAGATAATTTGATGCG 57.304 42.857 0.00 0.00 39.58 4.73
2794 3203 3.016031 TGTGGCAGATAATTTGATGCGT 58.984 40.909 0.00 0.00 39.58 5.24
2795 3204 3.181498 TGTGGCAGATAATTTGATGCGTG 60.181 43.478 0.00 0.00 39.58 5.34
2796 3205 3.065233 GTGGCAGATAATTTGATGCGTGA 59.935 43.478 0.00 0.00 39.58 4.35
2797 3206 3.313249 TGGCAGATAATTTGATGCGTGAG 59.687 43.478 0.00 0.00 39.58 3.51
2798 3207 3.304257 GGCAGATAATTTGATGCGTGAGG 60.304 47.826 0.00 0.00 39.58 3.86
2799 3208 3.313526 GCAGATAATTTGATGCGTGAGGT 59.686 43.478 0.00 0.00 0.00 3.85
2800 3209 4.553547 GCAGATAATTTGATGCGTGAGGTC 60.554 45.833 0.00 0.00 0.00 3.85
2801 3210 4.813161 CAGATAATTTGATGCGTGAGGTCT 59.187 41.667 0.00 0.00 0.00 3.85
2802 3211 5.985530 CAGATAATTTGATGCGTGAGGTCTA 59.014 40.000 0.00 0.00 0.00 2.59
2803 3212 5.986135 AGATAATTTGATGCGTGAGGTCTAC 59.014 40.000 0.00 0.00 0.00 2.59
2804 3213 3.895232 ATTTGATGCGTGAGGTCTACT 57.105 42.857 0.00 0.00 0.00 2.57
2805 3214 2.941453 TTGATGCGTGAGGTCTACTC 57.059 50.000 0.00 0.00 46.78 2.59
2806 3215 1.103803 TGATGCGTGAGGTCTACTCC 58.896 55.000 0.00 0.00 46.01 3.85
2807 3216 1.103803 GATGCGTGAGGTCTACTCCA 58.896 55.000 0.00 0.00 46.01 3.86
2808 3217 1.476891 GATGCGTGAGGTCTACTCCAA 59.523 52.381 0.00 0.00 46.01 3.53
2809 3218 1.334160 TGCGTGAGGTCTACTCCAAA 58.666 50.000 0.00 0.00 46.01 3.28
2810 3219 1.899814 TGCGTGAGGTCTACTCCAAAT 59.100 47.619 0.00 0.00 46.01 2.32
2811 3220 2.301870 TGCGTGAGGTCTACTCCAAATT 59.698 45.455 0.00 0.00 46.01 1.82
2812 3221 3.244422 TGCGTGAGGTCTACTCCAAATTT 60.244 43.478 0.00 0.00 46.01 1.82
2813 3222 3.371285 GCGTGAGGTCTACTCCAAATTTC 59.629 47.826 0.00 0.00 46.01 2.17
2814 3223 4.566004 CGTGAGGTCTACTCCAAATTTCA 58.434 43.478 0.00 0.00 46.01 2.69
2815 3224 4.994852 CGTGAGGTCTACTCCAAATTTCAA 59.005 41.667 0.00 0.00 46.01 2.69
2816 3225 5.107065 CGTGAGGTCTACTCCAAATTTCAAC 60.107 44.000 0.00 0.00 46.01 3.18
2817 3226 5.998363 GTGAGGTCTACTCCAAATTTCAACT 59.002 40.000 0.00 0.00 46.01 3.16
2818 3227 6.147985 GTGAGGTCTACTCCAAATTTCAACTC 59.852 42.308 0.00 0.00 46.01 3.01
2819 3228 6.183361 TGAGGTCTACTCCAAATTTCAACTCA 60.183 38.462 0.00 0.00 46.01 3.41
2820 3229 6.784031 AGGTCTACTCCAAATTTCAACTCAT 58.216 36.000 0.00 0.00 0.00 2.90
2821 3230 7.234355 AGGTCTACTCCAAATTTCAACTCATT 58.766 34.615 0.00 0.00 0.00 2.57
2822 3231 7.725844 AGGTCTACTCCAAATTTCAACTCATTT 59.274 33.333 0.00 0.00 0.00 2.32
2823 3232 9.010029 GGTCTACTCCAAATTTCAACTCATTTA 57.990 33.333 0.00 0.00 0.00 1.40
2827 3236 8.463930 ACTCCAAATTTCAACTCATTTAGACA 57.536 30.769 0.00 0.00 0.00 3.41
2828 3237 9.082313 ACTCCAAATTTCAACTCATTTAGACAT 57.918 29.630 0.00 0.00 0.00 3.06
2829 3238 9.565213 CTCCAAATTTCAACTCATTTAGACATC 57.435 33.333 0.00 0.00 0.00 3.06
2830 3239 9.300681 TCCAAATTTCAACTCATTTAGACATCT 57.699 29.630 0.00 0.00 0.00 2.90
2831 3240 9.350357 CCAAATTTCAACTCATTTAGACATCTG 57.650 33.333 0.00 0.00 0.00 2.90
2834 3243 6.974932 TTCAACTCATTTAGACATCTGAGC 57.025 37.500 0.00 0.00 38.94 4.26
2835 3244 6.041423 TCAACTCATTTAGACATCTGAGCA 57.959 37.500 0.00 0.00 38.94 4.26
2836 3245 6.104665 TCAACTCATTTAGACATCTGAGCAG 58.895 40.000 0.00 0.00 38.94 4.24
2837 3246 4.440880 ACTCATTTAGACATCTGAGCAGC 58.559 43.478 0.00 0.00 38.94 5.25
2838 3247 4.161942 ACTCATTTAGACATCTGAGCAGCT 59.838 41.667 0.00 0.00 38.94 4.24
2839 3248 4.691175 TCATTTAGACATCTGAGCAGCTC 58.309 43.478 16.21 16.21 0.00 4.09
2840 3249 4.405036 TCATTTAGACATCTGAGCAGCTCT 59.595 41.667 23.15 2.04 0.00 4.09
2841 3250 4.383850 TTTAGACATCTGAGCAGCTCTC 57.616 45.455 23.15 11.79 42.23 3.20
2842 3251 0.740149 AGACATCTGAGCAGCTCTCG 59.260 55.000 23.15 13.93 44.86 4.04
2844 3253 1.592131 CATCTGAGCAGCTCTCGGC 60.592 63.158 23.15 0.00 45.76 5.54
2845 3254 2.056815 ATCTGAGCAGCTCTCGGCA 61.057 57.895 23.15 2.15 45.76 5.69
2846 3255 1.611474 ATCTGAGCAGCTCTCGGCAA 61.611 55.000 23.15 0.68 45.76 4.52
2847 3256 1.375140 CTGAGCAGCTCTCGGCAAA 60.375 57.895 23.15 0.00 44.86 3.68
2848 3257 0.952497 CTGAGCAGCTCTCGGCAAAA 60.952 55.000 23.15 0.00 44.86 2.44
2849 3258 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
2893 3302 8.831000 AAAAGTTTACTGTTCACGTATTGTTC 57.169 30.769 0.00 0.00 0.00 3.18
2894 3303 7.781548 AAGTTTACTGTTCACGTATTGTTCT 57.218 32.000 0.00 0.00 0.00 3.01
2895 3304 7.173863 AGTTTACTGTTCACGTATTGTTCTG 57.826 36.000 0.00 0.00 0.00 3.02
2896 3305 6.982141 AGTTTACTGTTCACGTATTGTTCTGA 59.018 34.615 0.00 0.00 0.00 3.27
2897 3306 6.758593 TTACTGTTCACGTATTGTTCTGAC 57.241 37.500 0.00 0.00 0.00 3.51
2898 3307 4.056050 ACTGTTCACGTATTGTTCTGACC 58.944 43.478 0.00 0.00 0.00 4.02
2899 3308 3.395639 TGTTCACGTATTGTTCTGACCC 58.604 45.455 0.00 0.00 0.00 4.46
2900 3309 3.181464 TGTTCACGTATTGTTCTGACCCA 60.181 43.478 0.00 0.00 0.00 4.51
2901 3310 3.755112 TCACGTATTGTTCTGACCCAA 57.245 42.857 0.00 0.00 0.00 4.12
2902 3311 4.280436 TCACGTATTGTTCTGACCCAAT 57.720 40.909 0.00 6.88 35.55 3.16
2903 3312 4.647611 TCACGTATTGTTCTGACCCAATT 58.352 39.130 6.96 0.00 33.54 2.32
2904 3313 5.067273 TCACGTATTGTTCTGACCCAATTT 58.933 37.500 6.96 0.00 33.54 1.82
2905 3314 5.049060 TCACGTATTGTTCTGACCCAATTTG 60.049 40.000 6.96 0.00 33.54 2.32
2906 3315 4.825085 ACGTATTGTTCTGACCCAATTTGT 59.175 37.500 6.96 4.59 33.54 2.83
2907 3316 5.300792 ACGTATTGTTCTGACCCAATTTGTT 59.699 36.000 6.96 0.00 33.54 2.83
2908 3317 6.183360 ACGTATTGTTCTGACCCAATTTGTTT 60.183 34.615 6.96 0.00 33.54 2.83
2909 3318 6.699642 CGTATTGTTCTGACCCAATTTGTTTT 59.300 34.615 6.96 0.00 33.54 2.43
2910 3319 7.223777 CGTATTGTTCTGACCCAATTTGTTTTT 59.776 33.333 6.96 0.00 33.54 1.94
2926 3335 2.824961 TTTTTGGCCAAGAGCTGCT 58.175 47.368 19.48 0.00 43.05 4.24
2927 3336 0.675633 TTTTTGGCCAAGAGCTGCTC 59.324 50.000 21.72 21.72 43.05 4.26
2928 3337 0.467844 TTTTGGCCAAGAGCTGCTCA 60.468 50.000 29.49 7.39 43.05 4.26
2929 3338 0.467844 TTTGGCCAAGAGCTGCTCAA 60.468 50.000 29.49 13.07 43.05 3.02
2930 3339 0.467844 TTGGCCAAGAGCTGCTCAAA 60.468 50.000 29.49 11.86 43.05 2.69
2931 3340 0.251474 TGGCCAAGAGCTGCTCAAAT 60.251 50.000 29.49 13.72 43.05 2.32
2932 3341 0.172803 GGCCAAGAGCTGCTCAAATG 59.827 55.000 29.49 22.81 43.05 2.32
2933 3342 0.886563 GCCAAGAGCTGCTCAAATGT 59.113 50.000 29.49 7.47 38.99 2.71
2934 3343 1.135460 GCCAAGAGCTGCTCAAATGTC 60.135 52.381 29.49 12.82 38.99 3.06
2935 3344 1.471684 CCAAGAGCTGCTCAAATGTCC 59.528 52.381 29.49 2.47 32.06 4.02
2936 3345 2.156917 CAAGAGCTGCTCAAATGTCCA 58.843 47.619 29.49 0.00 32.06 4.02
2937 3346 2.555325 CAAGAGCTGCTCAAATGTCCAA 59.445 45.455 29.49 0.00 32.06 3.53
2938 3347 2.867624 AGAGCTGCTCAAATGTCCAAA 58.132 42.857 29.49 0.00 32.06 3.28
2939 3348 3.428532 AGAGCTGCTCAAATGTCCAAAT 58.571 40.909 29.49 3.19 32.06 2.32
2940 3349 3.192844 AGAGCTGCTCAAATGTCCAAATG 59.807 43.478 29.49 0.00 32.06 2.32
2941 3350 3.159472 AGCTGCTCAAATGTCCAAATGA 58.841 40.909 0.00 0.00 0.00 2.57
2942 3351 3.192844 AGCTGCTCAAATGTCCAAATGAG 59.807 43.478 0.00 7.82 41.69 2.90
2943 3352 3.057033 GCTGCTCAAATGTCCAAATGAGT 60.057 43.478 11.79 0.00 41.03 3.41
2944 3353 4.560108 GCTGCTCAAATGTCCAAATGAGTT 60.560 41.667 11.79 0.00 41.03 3.01
2945 3354 5.335897 GCTGCTCAAATGTCCAAATGAGTTA 60.336 40.000 11.79 4.42 41.03 2.24
2946 3355 6.647334 TGCTCAAATGTCCAAATGAGTTAA 57.353 33.333 11.79 0.00 41.03 2.01
2947 3356 7.048629 TGCTCAAATGTCCAAATGAGTTAAA 57.951 32.000 11.79 0.00 41.03 1.52
2948 3357 7.495901 TGCTCAAATGTCCAAATGAGTTAAAA 58.504 30.769 11.79 0.00 41.03 1.52
2949 3358 8.149647 TGCTCAAATGTCCAAATGAGTTAAAAT 58.850 29.630 11.79 0.00 41.03 1.82
2950 3359 8.992073 GCTCAAATGTCCAAATGAGTTAAAATT 58.008 29.630 11.79 0.00 41.03 1.82
2963 3372 9.687210 AATGAGTTAAAATTTAAAACGGACCTC 57.313 29.630 0.00 2.25 0.00 3.85
2964 3373 8.223177 TGAGTTAAAATTTAAAACGGACCTCA 57.777 30.769 0.00 4.59 0.00 3.86
2965 3374 8.852135 TGAGTTAAAATTTAAAACGGACCTCAT 58.148 29.630 0.00 0.00 0.00 2.90
2966 3375 9.124807 GAGTTAAAATTTAAAACGGACCTCATG 57.875 33.333 0.00 0.00 0.00 3.07
2967 3376 7.597369 AGTTAAAATTTAAAACGGACCTCATGC 59.403 33.333 0.00 0.00 0.00 4.06
2968 3377 5.461032 AAATTTAAAACGGACCTCATGCA 57.539 34.783 0.00 0.00 0.00 3.96
2969 3378 5.659440 AATTTAAAACGGACCTCATGCAT 57.341 34.783 0.00 0.00 0.00 3.96
2970 3379 4.695217 TTTAAAACGGACCTCATGCATC 57.305 40.909 0.00 0.00 0.00 3.91
2971 3380 2.198827 AAAACGGACCTCATGCATCA 57.801 45.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.440938 CTACTCCGCTCGAGGTCTGG 61.441 65.000 15.58 4.81 43.57 3.86
27 28 2.151202 CTCATCCTCTCTACTCCGCTC 58.849 57.143 0.00 0.00 0.00 5.03
56 57 2.158623 TCCTTTGCACCAGTGAGTTCAT 60.159 45.455 0.99 0.00 0.00 2.57
138 139 1.749334 CTATGGTGGCTCGTCTCCCC 61.749 65.000 0.00 0.00 0.00 4.81
139 140 1.742768 CTATGGTGGCTCGTCTCCC 59.257 63.158 0.00 0.00 0.00 4.30
140 141 1.068250 GCTATGGTGGCTCGTCTCC 59.932 63.158 0.00 0.00 0.00 3.71
141 142 1.068250 GGCTATGGTGGCTCGTCTC 59.932 63.158 0.00 0.00 0.00 3.36
142 143 1.381872 AGGCTATGGTGGCTCGTCT 60.382 57.895 0.00 0.00 38.54 4.18
143 144 1.068250 GAGGCTATGGTGGCTCGTC 59.932 63.158 2.51 0.00 46.78 4.20
144 145 3.221222 GAGGCTATGGTGGCTCGT 58.779 61.111 2.51 0.00 46.78 4.18
147 148 3.866582 GGCGAGGCTATGGTGGCT 61.867 66.667 0.00 0.00 45.80 4.75
149 150 4.609018 CCGGCGAGGCTATGGTGG 62.609 72.222 9.30 0.00 0.00 4.61
168 169 4.719369 AGCGGCGTCCACTTCGTC 62.719 66.667 9.37 0.00 0.00 4.20
169 170 4.719369 GAGCGGCGTCCACTTCGT 62.719 66.667 9.37 0.00 0.00 3.85
171 172 4.070552 AGGAGCGGCGTCCACTTC 62.071 66.667 23.66 6.82 39.34 3.01
172 173 4.379243 CAGGAGCGGCGTCCACTT 62.379 66.667 23.66 6.99 39.34 3.16
174 175 3.876589 TTTCAGGAGCGGCGTCCAC 62.877 63.158 23.66 7.82 39.34 4.02
175 176 3.621805 TTTCAGGAGCGGCGTCCA 61.622 61.111 23.66 7.56 39.34 4.02
176 177 3.119096 GTTTCAGGAGCGGCGTCC 61.119 66.667 17.16 17.16 36.79 4.79
177 178 3.119096 GGTTTCAGGAGCGGCGTC 61.119 66.667 9.37 4.77 0.00 5.19
178 179 4.699522 GGGTTTCAGGAGCGGCGT 62.700 66.667 9.37 0.00 0.00 5.68
179 180 2.907897 CTAGGGTTTCAGGAGCGGCG 62.908 65.000 0.51 0.51 0.00 6.46
180 181 1.153349 CTAGGGTTTCAGGAGCGGC 60.153 63.158 0.00 0.00 0.00 6.53
181 182 1.153349 GCTAGGGTTTCAGGAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
182 183 1.153349 GGCTAGGGTTTCAGGAGCG 60.153 63.158 0.00 0.00 33.85 5.03
183 184 0.393132 GTGGCTAGGGTTTCAGGAGC 60.393 60.000 0.00 0.00 0.00 4.70
184 185 0.108138 CGTGGCTAGGGTTTCAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
185 186 1.550130 CCGTGGCTAGGGTTTCAGGA 61.550 60.000 0.00 0.00 0.00 3.86
186 187 1.078426 CCGTGGCTAGGGTTTCAGG 60.078 63.158 0.00 0.00 0.00 3.86
187 188 1.745489 GCCGTGGCTAGGGTTTCAG 60.745 63.158 10.71 0.00 38.26 3.02
188 189 2.349755 GCCGTGGCTAGGGTTTCA 59.650 61.111 10.71 0.00 38.26 2.69
205 206 3.522731 CTCGCTCCCGACCCTCAG 61.523 72.222 0.00 0.00 38.82 3.35
220 221 2.835431 TAGAGGCCTCCTGCGCTC 60.835 66.667 29.54 2.20 42.61 5.03
221 222 2.837291 CTAGAGGCCTCCTGCGCT 60.837 66.667 29.54 12.24 42.61 5.92
222 223 4.600576 GCTAGAGGCCTCCTGCGC 62.601 72.222 29.54 21.02 42.61 6.09
223 224 2.725312 TTGCTAGAGGCCTCCTGCG 61.725 63.158 30.14 18.70 42.61 5.18
224 225 1.153269 GTTGCTAGAGGCCTCCTGC 60.153 63.158 29.88 29.88 40.92 4.85
225 226 1.142748 CGTTGCTAGAGGCCTCCTG 59.857 63.158 29.54 21.90 40.92 3.86
226 227 0.614979 TTCGTTGCTAGAGGCCTCCT 60.615 55.000 29.54 18.26 40.92 3.69
227 228 0.466124 ATTCGTTGCTAGAGGCCTCC 59.534 55.000 29.54 14.74 40.92 4.30
228 229 2.317530 AATTCGTTGCTAGAGGCCTC 57.682 50.000 26.22 26.22 40.92 4.70
229 230 2.359900 CAAATTCGTTGCTAGAGGCCT 58.640 47.619 3.86 3.86 40.92 5.19
230 231 1.401905 CCAAATTCGTTGCTAGAGGCC 59.598 52.381 0.00 0.00 40.92 5.19
231 232 2.352960 CTCCAAATTCGTTGCTAGAGGC 59.647 50.000 0.00 0.00 42.22 4.70
232 233 2.939103 CCTCCAAATTCGTTGCTAGAGG 59.061 50.000 0.00 0.00 37.06 3.69
233 234 2.939103 CCCTCCAAATTCGTTGCTAGAG 59.061 50.000 0.00 0.00 35.74 2.43
234 235 2.569853 TCCCTCCAAATTCGTTGCTAGA 59.430 45.455 0.00 0.00 35.74 2.43
235 236 2.985896 TCCCTCCAAATTCGTTGCTAG 58.014 47.619 0.00 0.00 35.74 3.42
236 237 3.278574 CATCCCTCCAAATTCGTTGCTA 58.721 45.455 0.00 0.00 35.74 3.49
237 238 2.094675 CATCCCTCCAAATTCGTTGCT 58.905 47.619 0.00 0.00 35.74 3.91
238 239 1.134946 CCATCCCTCCAAATTCGTTGC 59.865 52.381 0.00 0.00 35.74 4.17
239 240 1.750778 CCCATCCCTCCAAATTCGTTG 59.249 52.381 0.00 0.00 36.94 4.10
240 241 1.638589 TCCCATCCCTCCAAATTCGTT 59.361 47.619 0.00 0.00 0.00 3.85
241 242 1.212935 CTCCCATCCCTCCAAATTCGT 59.787 52.381 0.00 0.00 0.00 3.85
242 243 1.477558 CCTCCCATCCCTCCAAATTCG 60.478 57.143 0.00 0.00 0.00 3.34
243 244 1.852965 TCCTCCCATCCCTCCAAATTC 59.147 52.381 0.00 0.00 0.00 2.17
244 245 2.000290 TCCTCCCATCCCTCCAAATT 58.000 50.000 0.00 0.00 0.00 1.82
245 246 1.855599 CTTCCTCCCATCCCTCCAAAT 59.144 52.381 0.00 0.00 0.00 2.32
246 247 1.298953 CTTCCTCCCATCCCTCCAAA 58.701 55.000 0.00 0.00 0.00 3.28
247 248 0.624500 CCTTCCTCCCATCCCTCCAA 60.625 60.000 0.00 0.00 0.00 3.53
248 249 1.004758 CCTTCCTCCCATCCCTCCA 59.995 63.158 0.00 0.00 0.00 3.86
249 250 0.766288 CTCCTTCCTCCCATCCCTCC 60.766 65.000 0.00 0.00 0.00 4.30
250 251 1.414866 GCTCCTTCCTCCCATCCCTC 61.415 65.000 0.00 0.00 0.00 4.30
251 252 1.385206 GCTCCTTCCTCCCATCCCT 60.385 63.158 0.00 0.00 0.00 4.20
252 253 1.694169 TGCTCCTTCCTCCCATCCC 60.694 63.158 0.00 0.00 0.00 3.85
253 254 0.692419 TCTGCTCCTTCCTCCCATCC 60.692 60.000 0.00 0.00 0.00 3.51
254 255 0.758123 CTCTGCTCCTTCCTCCCATC 59.242 60.000 0.00 0.00 0.00 3.51
255 256 1.344191 GCTCTGCTCCTTCCTCCCAT 61.344 60.000 0.00 0.00 0.00 4.00
256 257 1.992277 GCTCTGCTCCTTCCTCCCA 60.992 63.158 0.00 0.00 0.00 4.37
257 258 2.907236 GCTCTGCTCCTTCCTCCC 59.093 66.667 0.00 0.00 0.00 4.30
258 259 2.015227 CTCGCTCTGCTCCTTCCTCC 62.015 65.000 0.00 0.00 0.00 4.30
259 260 1.437160 CTCGCTCTGCTCCTTCCTC 59.563 63.158 0.00 0.00 0.00 3.71
260 261 2.057408 CCTCGCTCTGCTCCTTCCT 61.057 63.158 0.00 0.00 0.00 3.36
261 262 2.498726 CCTCGCTCTGCTCCTTCC 59.501 66.667 0.00 0.00 0.00 3.46
262 263 2.498726 CCCTCGCTCTGCTCCTTC 59.501 66.667 0.00 0.00 0.00 3.46
263 264 3.080121 CCCCTCGCTCTGCTCCTT 61.080 66.667 0.00 0.00 0.00 3.36
264 265 4.067512 TCCCCTCGCTCTGCTCCT 62.068 66.667 0.00 0.00 0.00 3.69
265 266 3.535962 CTCCCCTCGCTCTGCTCC 61.536 72.222 0.00 0.00 0.00 4.70
266 267 3.535962 CCTCCCCTCGCTCTGCTC 61.536 72.222 0.00 0.00 0.00 4.26
267 268 4.390556 ACCTCCCCTCGCTCTGCT 62.391 66.667 0.00 0.00 0.00 4.24
268 269 3.844090 GACCTCCCCTCGCTCTGC 61.844 72.222 0.00 0.00 0.00 4.26
269 270 2.888464 TACGACCTCCCCTCGCTCTG 62.888 65.000 0.00 0.00 34.34 3.35
270 271 2.612095 CTACGACCTCCCCTCGCTCT 62.612 65.000 0.00 0.00 34.34 4.09
271 272 2.124403 TACGACCTCCCCTCGCTC 60.124 66.667 0.00 0.00 34.34 5.03
272 273 2.124236 CTACGACCTCCCCTCGCT 60.124 66.667 0.00 0.00 34.34 4.93
273 274 3.217743 CCTACGACCTCCCCTCGC 61.218 72.222 0.00 0.00 34.34 5.03
274 275 1.823041 GACCTACGACCTCCCCTCG 60.823 68.421 0.00 0.00 37.17 4.63
275 276 0.752376 CAGACCTACGACCTCCCCTC 60.752 65.000 0.00 0.00 0.00 4.30
276 277 1.306970 CAGACCTACGACCTCCCCT 59.693 63.158 0.00 0.00 0.00 4.79
277 278 2.424733 GCAGACCTACGACCTCCCC 61.425 68.421 0.00 0.00 0.00 4.81
278 279 2.424733 GGCAGACCTACGACCTCCC 61.425 68.421 0.00 0.00 0.00 4.30
279 280 1.681327 TGGCAGACCTACGACCTCC 60.681 63.158 0.00 0.00 36.63 4.30
280 281 1.511768 GTGGCAGACCTACGACCTC 59.488 63.158 0.00 0.00 36.63 3.85
281 282 1.982938 GGTGGCAGACCTACGACCT 60.983 63.158 0.00 0.00 42.25 3.85
282 283 2.577593 GGTGGCAGACCTACGACC 59.422 66.667 0.00 0.00 42.25 4.79
283 284 2.577593 GGGTGGCAGACCTACGAC 59.422 66.667 4.28 0.00 45.33 4.34
284 285 3.066190 CGGGTGGCAGACCTACGA 61.066 66.667 6.59 0.00 45.33 3.43
285 286 4.814294 GCGGGTGGCAGACCTACG 62.814 72.222 6.59 2.11 45.33 3.51
286 287 4.468689 GGCGGGTGGCAGACCTAC 62.469 72.222 6.59 0.00 45.33 3.18
317 318 2.974698 CTCATGCCGGCCGATTCC 60.975 66.667 30.73 12.45 0.00 3.01
318 319 2.203070 ACTCATGCCGGCCGATTC 60.203 61.111 30.73 15.91 0.00 2.52
319 320 2.514592 CACTCATGCCGGCCGATT 60.515 61.111 30.73 12.11 0.00 3.34
320 321 4.552365 CCACTCATGCCGGCCGAT 62.552 66.667 30.73 10.80 0.00 4.18
348 349 4.816984 TCCTCCCCGCGACTCCTC 62.817 72.222 8.23 0.00 0.00 3.71
349 350 4.824515 CTCCTCCCCGCGACTCCT 62.825 72.222 8.23 0.00 0.00 3.69
350 351 4.816984 TCTCCTCCCCGCGACTCC 62.817 72.222 8.23 0.00 0.00 3.85
351 352 3.213402 CTCTCCTCCCCGCGACTC 61.213 72.222 8.23 0.00 0.00 3.36
352 353 3.707640 CTCTCTCCTCCCCGCGACT 62.708 68.421 8.23 0.00 0.00 4.18
353 354 3.213402 CTCTCTCCTCCCCGCGAC 61.213 72.222 8.23 0.00 0.00 5.19
354 355 4.507916 CCTCTCTCCTCCCCGCGA 62.508 72.222 8.23 0.00 0.00 5.87
357 358 4.150454 AGCCCTCTCTCCTCCCCG 62.150 72.222 0.00 0.00 0.00 5.73
358 359 2.123033 GAGCCCTCTCTCCTCCCC 60.123 72.222 0.00 0.00 36.42 4.81
359 360 2.520741 CGAGCCCTCTCTCCTCCC 60.521 72.222 0.00 0.00 37.19 4.30
360 361 3.223589 GCGAGCCCTCTCTCCTCC 61.224 72.222 0.00 0.00 37.19 4.30
361 362 2.015227 CTTGCGAGCCCTCTCTCCTC 62.015 65.000 0.00 0.00 37.19 3.71
362 363 2.038007 TTGCGAGCCCTCTCTCCT 59.962 61.111 0.00 0.00 37.19 3.69
363 364 2.055042 TCTTGCGAGCCCTCTCTCC 61.055 63.158 0.00 0.00 37.19 3.71
364 365 1.140804 GTCTTGCGAGCCCTCTCTC 59.859 63.158 0.00 0.00 37.19 3.20
365 366 1.188219 TTGTCTTGCGAGCCCTCTCT 61.188 55.000 0.00 0.00 37.19 3.10
366 367 0.739112 CTTGTCTTGCGAGCCCTCTC 60.739 60.000 0.00 0.00 35.99 3.20
367 368 1.188219 TCTTGTCTTGCGAGCCCTCT 61.188 55.000 0.00 0.00 0.00 3.69
368 369 0.739112 CTCTTGTCTTGCGAGCCCTC 60.739 60.000 0.00 0.00 0.00 4.30
369 370 1.188219 TCTCTTGTCTTGCGAGCCCT 61.188 55.000 0.00 0.00 0.00 5.19
370 371 0.739112 CTCTCTTGTCTTGCGAGCCC 60.739 60.000 0.00 0.00 0.00 5.19
371 372 0.244994 TCTCTCTTGTCTTGCGAGCC 59.755 55.000 0.00 0.00 0.00 4.70
372 373 1.201181 TCTCTCTCTTGTCTTGCGAGC 59.799 52.381 0.00 0.00 0.00 5.03
373 374 2.159393 CCTCTCTCTCTTGTCTTGCGAG 60.159 54.545 0.00 0.00 0.00 5.03
374 375 1.815613 CCTCTCTCTCTTGTCTTGCGA 59.184 52.381 0.00 0.00 0.00 5.10
375 376 1.815613 TCCTCTCTCTCTTGTCTTGCG 59.184 52.381 0.00 0.00 0.00 4.85
376 377 2.166254 CCTCCTCTCTCTCTTGTCTTGC 59.834 54.545 0.00 0.00 0.00 4.01
377 378 2.166254 GCCTCCTCTCTCTCTTGTCTTG 59.834 54.545 0.00 0.00 0.00 3.02
378 379 2.042979 AGCCTCCTCTCTCTCTTGTCTT 59.957 50.000 0.00 0.00 0.00 3.01
379 380 1.640670 AGCCTCCTCTCTCTCTTGTCT 59.359 52.381 0.00 0.00 0.00 3.41
380 381 2.143876 AGCCTCCTCTCTCTCTTGTC 57.856 55.000 0.00 0.00 0.00 3.18
381 382 2.178580 CAAGCCTCCTCTCTCTCTTGT 58.821 52.381 0.00 0.00 0.00 3.16
382 383 1.134729 GCAAGCCTCCTCTCTCTCTTG 60.135 57.143 0.00 0.00 35.37 3.02
383 384 1.194218 GCAAGCCTCCTCTCTCTCTT 58.806 55.000 0.00 0.00 0.00 2.85
384 385 1.037030 CGCAAGCCTCCTCTCTCTCT 61.037 60.000 0.00 0.00 0.00 3.10
385 386 1.319614 ACGCAAGCCTCCTCTCTCTC 61.320 60.000 0.00 0.00 45.62 3.20
386 387 1.304879 ACGCAAGCCTCCTCTCTCT 60.305 57.895 0.00 0.00 45.62 3.10
387 388 1.153667 CACGCAAGCCTCCTCTCTC 60.154 63.158 0.00 0.00 45.62 3.20
388 389 1.910772 ACACGCAAGCCTCCTCTCT 60.911 57.895 0.00 0.00 45.62 3.10
389 390 1.739562 CACACGCAAGCCTCCTCTC 60.740 63.158 0.00 0.00 45.62 3.20
390 391 2.164865 CTCACACGCAAGCCTCCTCT 62.165 60.000 0.00 0.00 45.62 3.69
391 392 1.739562 CTCACACGCAAGCCTCCTC 60.740 63.158 0.00 0.00 45.62 3.71
392 393 2.164865 CTCTCACACGCAAGCCTCCT 62.165 60.000 0.00 0.00 45.62 3.69
393 394 1.739562 CTCTCACACGCAAGCCTCC 60.740 63.158 0.00 0.00 45.62 4.30
394 395 1.739562 CCTCTCACACGCAAGCCTC 60.740 63.158 0.00 0.00 45.62 4.70
395 396 1.548357 ATCCTCTCACACGCAAGCCT 61.548 55.000 0.00 0.00 45.62 4.58
396 397 1.078848 ATCCTCTCACACGCAAGCC 60.079 57.895 0.00 0.00 45.62 4.35
397 398 0.390340 TGATCCTCTCACACGCAAGC 60.390 55.000 0.00 0.00 45.62 4.01
398 399 2.084610 TTGATCCTCTCACACGCAAG 57.915 50.000 0.00 0.00 37.11 4.01
399 400 2.349590 CATTGATCCTCTCACACGCAA 58.650 47.619 0.00 0.00 32.17 4.85
400 401 1.405933 CCATTGATCCTCTCACACGCA 60.406 52.381 0.00 0.00 32.17 5.24
401 402 1.293924 CCATTGATCCTCTCACACGC 58.706 55.000 0.00 0.00 32.17 5.34
402 403 1.208052 ACCCATTGATCCTCTCACACG 59.792 52.381 0.00 0.00 32.17 4.49
403 404 3.706594 TCTACCCATTGATCCTCTCACAC 59.293 47.826 0.00 0.00 32.17 3.82
404 405 3.994317 TCTACCCATTGATCCTCTCACA 58.006 45.455 0.00 0.00 32.17 3.58
405 406 4.802248 GCATCTACCCATTGATCCTCTCAC 60.802 50.000 0.00 0.00 32.17 3.51
406 407 3.326006 GCATCTACCCATTGATCCTCTCA 59.674 47.826 0.00 0.00 0.00 3.27
407 408 3.616076 CGCATCTACCCATTGATCCTCTC 60.616 52.174 0.00 0.00 0.00 3.20
408 409 2.301296 CGCATCTACCCATTGATCCTCT 59.699 50.000 0.00 0.00 0.00 3.69
409 410 2.613977 CCGCATCTACCCATTGATCCTC 60.614 54.545 0.00 0.00 0.00 3.71
410 411 1.349026 CCGCATCTACCCATTGATCCT 59.651 52.381 0.00 0.00 0.00 3.24
411 412 1.347707 TCCGCATCTACCCATTGATCC 59.652 52.381 0.00 0.00 0.00 3.36
412 413 2.839486 TCCGCATCTACCCATTGATC 57.161 50.000 0.00 0.00 0.00 2.92
413 414 3.795688 AATCCGCATCTACCCATTGAT 57.204 42.857 0.00 0.00 0.00 2.57
414 415 3.576078 AAATCCGCATCTACCCATTGA 57.424 42.857 0.00 0.00 0.00 2.57
415 416 4.654091 AAAAATCCGCATCTACCCATTG 57.346 40.909 0.00 0.00 0.00 2.82
433 434 3.492337 ACGCTTGGACCCAATCTAAAAA 58.508 40.909 1.46 0.00 35.20 1.94
434 435 3.149005 ACGCTTGGACCCAATCTAAAA 57.851 42.857 1.46 0.00 35.20 1.52
435 436 2.871096 ACGCTTGGACCCAATCTAAA 57.129 45.000 1.46 0.00 35.20 1.85
436 437 2.871096 AACGCTTGGACCCAATCTAA 57.129 45.000 1.46 0.00 35.20 2.10
437 438 2.871096 AAACGCTTGGACCCAATCTA 57.129 45.000 1.46 0.00 35.20 1.98
438 439 1.995376 AAAACGCTTGGACCCAATCT 58.005 45.000 1.46 0.00 35.20 2.40
439 440 2.812358 AAAAACGCTTGGACCCAATC 57.188 45.000 1.46 0.00 35.20 2.67
440 441 3.243941 GGTTAAAAACGCTTGGACCCAAT 60.244 43.478 1.46 0.00 35.20 3.16
441 442 2.101082 GGTTAAAAACGCTTGGACCCAA 59.899 45.455 1.11 1.11 0.00 4.12
442 443 1.682323 GGTTAAAAACGCTTGGACCCA 59.318 47.619 0.00 0.00 0.00 4.51
443 444 1.958579 AGGTTAAAAACGCTTGGACCC 59.041 47.619 0.00 0.00 0.00 4.46
444 445 3.720949 AAGGTTAAAAACGCTTGGACC 57.279 42.857 0.00 0.00 0.00 4.46
445 446 4.046462 GGAAAGGTTAAAAACGCTTGGAC 58.954 43.478 0.00 0.00 0.00 4.02
446 447 3.068448 GGGAAAGGTTAAAAACGCTTGGA 59.932 43.478 0.00 0.00 0.00 3.53
447 448 3.386486 GGGAAAGGTTAAAAACGCTTGG 58.614 45.455 0.00 0.00 0.00 3.61
448 449 3.069016 AGGGGAAAGGTTAAAAACGCTTG 59.931 43.478 0.00 0.00 0.00 4.01
449 450 3.302161 AGGGGAAAGGTTAAAAACGCTT 58.698 40.909 0.00 0.00 0.00 4.68
450 451 2.953453 AGGGGAAAGGTTAAAAACGCT 58.047 42.857 0.00 0.00 0.00 5.07
451 452 3.386486 CAAGGGGAAAGGTTAAAAACGC 58.614 45.455 0.00 0.00 0.00 4.84
452 453 3.800949 GCCAAGGGGAAAGGTTAAAAACG 60.801 47.826 0.00 0.00 35.59 3.60
453 454 3.134985 TGCCAAGGGGAAAGGTTAAAAAC 59.865 43.478 0.00 0.00 35.59 2.43
454 455 3.134985 GTGCCAAGGGGAAAGGTTAAAAA 59.865 43.478 0.00 0.00 35.59 1.94
455 456 2.701423 GTGCCAAGGGGAAAGGTTAAAA 59.299 45.455 0.00 0.00 35.59 1.52
456 457 2.321719 GTGCCAAGGGGAAAGGTTAAA 58.678 47.619 0.00 0.00 35.59 1.52
457 458 1.218196 TGTGCCAAGGGGAAAGGTTAA 59.782 47.619 0.00 0.00 35.59 2.01
458 459 0.854218 TGTGCCAAGGGGAAAGGTTA 59.146 50.000 0.00 0.00 35.59 2.85
459 460 0.469892 CTGTGCCAAGGGGAAAGGTT 60.470 55.000 0.00 0.00 35.59 3.50
460 461 1.153756 CTGTGCCAAGGGGAAAGGT 59.846 57.895 0.00 0.00 35.59 3.50
461 462 0.404040 TACTGTGCCAAGGGGAAAGG 59.596 55.000 0.00 0.00 32.27 3.11
462 463 2.286365 TTACTGTGCCAAGGGGAAAG 57.714 50.000 0.00 0.00 34.34 2.62
463 464 2.757894 TTTACTGTGCCAAGGGGAAA 57.242 45.000 0.00 0.00 35.59 3.13
464 465 2.757894 TTTTACTGTGCCAAGGGGAA 57.242 45.000 0.00 0.00 35.59 3.97
465 466 2.802719 GATTTTACTGTGCCAAGGGGA 58.197 47.619 0.00 0.00 35.59 4.81
466 467 1.472480 CGATTTTACTGTGCCAAGGGG 59.528 52.381 0.00 0.00 37.18 4.79
467 468 2.432444 TCGATTTTACTGTGCCAAGGG 58.568 47.619 0.00 0.00 0.00 3.95
468 469 3.440173 ACATCGATTTTACTGTGCCAAGG 59.560 43.478 0.00 0.00 0.00 3.61
469 470 4.406069 CACATCGATTTTACTGTGCCAAG 58.594 43.478 0.00 0.00 33.35 3.61
470 471 3.190327 CCACATCGATTTTACTGTGCCAA 59.810 43.478 8.70 0.00 38.10 4.52
471 472 2.746904 CCACATCGATTTTACTGTGCCA 59.253 45.455 8.70 0.00 38.10 4.92
472 473 2.477863 GCCACATCGATTTTACTGTGCC 60.478 50.000 8.70 0.00 38.10 5.01
473 474 2.161410 TGCCACATCGATTTTACTGTGC 59.839 45.455 8.70 5.82 38.10 4.57
474 475 3.188254 TGTGCCACATCGATTTTACTGTG 59.812 43.478 7.46 7.46 38.92 3.66
475 476 3.407698 TGTGCCACATCGATTTTACTGT 58.592 40.909 0.00 0.00 0.00 3.55
476 477 3.181507 CCTGTGCCACATCGATTTTACTG 60.182 47.826 0.00 0.00 0.00 2.74
477 478 3.009723 CCTGTGCCACATCGATTTTACT 58.990 45.455 0.00 0.00 0.00 2.24
478 479 2.747446 ACCTGTGCCACATCGATTTTAC 59.253 45.455 0.00 0.00 0.00 2.01
479 480 2.746904 CACCTGTGCCACATCGATTTTA 59.253 45.455 0.00 0.00 0.00 1.52
480 481 1.541147 CACCTGTGCCACATCGATTTT 59.459 47.619 0.00 0.00 0.00 1.82
481 482 1.167851 CACCTGTGCCACATCGATTT 58.832 50.000 0.00 0.00 0.00 2.17
482 483 0.324614 TCACCTGTGCCACATCGATT 59.675 50.000 0.00 0.00 0.00 3.34
483 484 0.107993 CTCACCTGTGCCACATCGAT 60.108 55.000 0.00 0.00 0.00 3.59
484 485 1.293179 CTCACCTGTGCCACATCGA 59.707 57.895 0.00 0.00 0.00 3.59
485 486 1.742880 CCTCACCTGTGCCACATCG 60.743 63.158 0.00 0.00 0.00 3.84
486 487 0.392193 CTCCTCACCTGTGCCACATC 60.392 60.000 0.00 0.00 0.00 3.06
487 488 1.681666 CTCCTCACCTGTGCCACAT 59.318 57.895 0.00 0.00 0.00 3.21
488 489 2.519622 CCTCCTCACCTGTGCCACA 61.520 63.158 0.00 0.00 0.00 4.17
489 490 2.348998 CCTCCTCACCTGTGCCAC 59.651 66.667 0.00 0.00 0.00 5.01
490 491 3.640407 GCCTCCTCACCTGTGCCA 61.640 66.667 0.00 0.00 0.00 4.92
491 492 4.767255 CGCCTCCTCACCTGTGCC 62.767 72.222 0.00 0.00 0.00 5.01
493 494 4.767255 GGCGCCTCCTCACCTGTG 62.767 72.222 22.15 0.00 0.00 3.66
495 496 2.826777 AAATGGCGCCTCCTCACCTG 62.827 60.000 29.70 0.00 35.26 4.00
496 497 2.606587 AAATGGCGCCTCCTCACCT 61.607 57.895 29.70 0.00 35.26 4.00
497 498 2.044946 AAATGGCGCCTCCTCACC 60.045 61.111 29.70 0.00 35.26 4.02
498 499 3.056313 GCAAATGGCGCCTCCTCAC 62.056 63.158 29.70 9.13 35.26 3.51
499 500 2.751436 GCAAATGGCGCCTCCTCA 60.751 61.111 29.70 7.00 35.26 3.86
508 509 0.657840 ATAAGAGTCGCGCAAATGGC 59.342 50.000 8.75 0.00 39.90 4.40
509 510 2.539547 CCAATAAGAGTCGCGCAAATGG 60.540 50.000 8.75 0.00 0.00 3.16
510 511 2.539547 CCCAATAAGAGTCGCGCAAATG 60.540 50.000 8.75 0.00 0.00 2.32
511 512 1.670811 CCCAATAAGAGTCGCGCAAAT 59.329 47.619 8.75 0.00 0.00 2.32
512 513 1.083489 CCCAATAAGAGTCGCGCAAA 58.917 50.000 8.75 0.00 0.00 3.68
513 514 0.036765 ACCCAATAAGAGTCGCGCAA 60.037 50.000 8.75 0.00 0.00 4.85
514 515 0.036765 AACCCAATAAGAGTCGCGCA 60.037 50.000 8.75 0.00 0.00 6.09
515 516 1.084289 AAACCCAATAAGAGTCGCGC 58.916 50.000 0.00 0.00 0.00 6.86
516 517 4.331717 ACATTAAACCCAATAAGAGTCGCG 59.668 41.667 0.00 0.00 0.00 5.87
517 518 5.353123 TCACATTAAACCCAATAAGAGTCGC 59.647 40.000 0.00 0.00 0.00 5.19
518 519 6.978343 TCACATTAAACCCAATAAGAGTCG 57.022 37.500 0.00 0.00 0.00 4.18
519 520 8.739972 ACATTCACATTAAACCCAATAAGAGTC 58.260 33.333 0.00 0.00 0.00 3.36
520 521 8.650143 ACATTCACATTAAACCCAATAAGAGT 57.350 30.769 0.00 0.00 0.00 3.24
555 557 0.179078 TAGCGTGTGGTGAACCGTTT 60.179 50.000 0.00 0.00 39.43 3.60
587 589 1.754803 TCGATTCGTTCCCTGTAGCAT 59.245 47.619 5.89 0.00 0.00 3.79
588 590 1.134367 CTCGATTCGTTCCCTGTAGCA 59.866 52.381 5.89 0.00 0.00 3.49
618 621 1.643292 CCTCACGTGTGTTGTGCTG 59.357 57.895 16.51 0.00 37.26 4.41
625 628 1.617322 TTCTAGAGCCTCACGTGTGT 58.383 50.000 16.51 0.00 0.00 3.72
627 630 1.478510 CCATTCTAGAGCCTCACGTGT 59.521 52.381 16.51 0.00 0.00 4.49
632 635 1.402896 CCCGCCATTCTAGAGCCTCA 61.403 60.000 0.00 0.00 0.00 3.86
679 682 1.419387 GTCAGATGGGCCTCATTAGCT 59.581 52.381 4.53 0.00 35.97 3.32
694 697 3.954200 TGCTTTATGAATGGCTGTCAGA 58.046 40.909 3.32 0.00 0.00 3.27
758 762 4.230745 TCCCTATAACTCACTTTTGCCC 57.769 45.455 0.00 0.00 0.00 5.36
771 775 2.030540 CCGCTCGATTCGTTCCCTATAA 60.031 50.000 5.89 0.00 0.00 0.98
774 778 1.033746 ACCGCTCGATTCGTTCCCTA 61.034 55.000 5.89 0.00 0.00 3.53
832 836 2.668457 CGCATCCTATAAAAGGCGCTAG 59.332 50.000 7.64 0.00 46.10 3.42
991 1020 0.897621 CTCTTGGCCATTTGGGGAAC 59.102 55.000 6.09 0.00 37.04 3.62
1053 1089 2.432628 GTAACTGACGCGGCTGCT 60.433 61.111 19.73 9.65 39.65 4.24
1065 1101 0.892358 TCCTCGTGCTCGTGGTAACT 60.892 55.000 23.71 0.00 46.59 2.24
1992 2062 1.276145 GACTCACGTCACTTGTCGCC 61.276 60.000 0.00 0.00 39.98 5.54
2004 2074 1.811266 CCAGCGGATTGGACTCACG 60.811 63.158 0.00 0.00 40.87 4.35
2088 2158 9.322769 AGTTTCTTACCCTATATGGTGGTATAG 57.677 37.037 9.76 7.71 39.53 1.31
2133 2204 3.071892 AGGTCAACTTCATCCAACGGTTA 59.928 43.478 0.00 0.00 0.00 2.85
2153 2229 1.338674 TGCCATGTTTCTACCGTCAGG 60.339 52.381 0.00 0.00 45.13 3.86
2181 2257 6.183360 CGAGAAGATTTAATGGTCAGCAACAT 60.183 38.462 0.00 0.00 0.00 2.71
2196 2273 9.575783 GAATCTAGTGAAGTAACGAGAAGATTT 57.424 33.333 0.00 0.00 35.76 2.17
2197 2274 8.962679 AGAATCTAGTGAAGTAACGAGAAGATT 58.037 33.333 0.00 0.00 35.76 2.40
2206 2283 4.870991 GGTGGCAGAATCTAGTGAAGTAAC 59.129 45.833 0.00 0.00 0.00 2.50
2229 2306 4.800993 CACGGAATCTTCTAGTTAGCACAG 59.199 45.833 0.00 0.00 0.00 3.66
2237 2314 3.056035 GTCCAACCACGGAATCTTCTAGT 60.056 47.826 0.00 0.00 36.62 2.57
2249 2326 1.821216 ATGGCTTAAGTCCAACCACG 58.179 50.000 18.48 0.00 37.13 4.94
2270 2347 5.623673 GTGTATTTAAGTTTTGTGCAGTCCG 59.376 40.000 0.00 0.00 0.00 4.79
2340 2704 8.421249 TGAATGATAGTTTGGACAGGAAAAAT 57.579 30.769 0.00 0.00 0.00 1.82
2346 2710 9.573133 GTAAAAATGAATGATAGTTTGGACAGG 57.427 33.333 0.00 0.00 0.00 4.00
2385 2759 7.178712 AGTATGATTTATGAAAGCACGTAGC 57.821 36.000 0.00 0.00 39.89 3.58
2469 2843 7.597369 ACATAGCACGTAAAAATATATCGAGCA 59.403 33.333 12.98 3.47 39.60 4.26
2498 2903 2.288948 TGCAAATGGAATTGTGAGGCAC 60.289 45.455 0.00 0.00 36.10 5.01
2537 2942 7.149569 ACAGTCAAAGATGGACATATTGTTG 57.850 36.000 8.99 10.32 37.74 3.33
2557 2962 8.414003 TCAGAGCTCGTATAATCAAATTACAGT 58.586 33.333 8.37 0.00 0.00 3.55
2558 2963 8.695284 GTCAGAGCTCGTATAATCAAATTACAG 58.305 37.037 8.37 0.00 0.00 2.74
2574 2983 1.138337 GCATAGCATGTCAGAGCTCG 58.862 55.000 8.37 3.55 42.05 5.03
2675 3084 2.828933 GAGCAGAAACTCCACGTCC 58.171 57.895 0.00 0.00 0.00 4.79
2682 3091 2.436824 GCCCGGGAGCAGAAACTC 60.437 66.667 29.31 0.00 35.86 3.01
2683 3092 2.930562 AGCCCGGGAGCAGAAACT 60.931 61.111 29.31 5.79 34.23 2.66
2684 3093 2.436824 GAGCCCGGGAGCAGAAAC 60.437 66.667 29.31 2.84 34.23 2.78
2685 3094 2.257409 GATGAGCCCGGGAGCAGAAA 62.257 60.000 29.31 1.13 34.23 2.52
2686 3095 2.688666 ATGAGCCCGGGAGCAGAA 60.689 61.111 29.31 2.41 34.23 3.02
2687 3096 3.157252 GATGAGCCCGGGAGCAGA 61.157 66.667 29.31 1.97 34.23 4.26
2688 3097 3.160047 AGATGAGCCCGGGAGCAG 61.160 66.667 29.31 0.00 34.23 4.24
2689 3098 3.473647 CAGATGAGCCCGGGAGCA 61.474 66.667 29.31 21.92 34.23 4.26
2690 3099 4.925861 GCAGATGAGCCCGGGAGC 62.926 72.222 29.31 16.09 0.00 4.70
2691 3100 3.473647 TGCAGATGAGCCCGGGAG 61.474 66.667 29.31 0.00 0.00 4.30
2692 3101 3.785859 GTGCAGATGAGCCCGGGA 61.786 66.667 29.31 2.74 0.00 5.14
2693 3102 4.864334 GGTGCAGATGAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
2694 3103 4.864334 GGGTGCAGATGAGCCCGG 62.864 72.222 0.00 0.00 0.00 5.73
2699 3108 3.746949 GAGGGCGGGTGCAGATGAG 62.747 68.421 0.00 0.00 45.35 2.90
2700 3109 3.785859 GAGGGCGGGTGCAGATGA 61.786 66.667 0.00 0.00 45.35 2.92
2701 3110 4.100084 TGAGGGCGGGTGCAGATG 62.100 66.667 0.00 0.00 45.35 2.90
2702 3111 3.790437 CTGAGGGCGGGTGCAGAT 61.790 66.667 0.00 0.00 45.35 2.90
2706 3115 3.860930 TTTTCCTGAGGGCGGGTGC 62.861 63.158 0.00 0.00 41.60 5.01
2707 3116 1.228429 TTTTTCCTGAGGGCGGGTG 60.228 57.895 0.00 0.00 41.60 4.61
2708 3117 3.257133 TTTTTCCTGAGGGCGGGT 58.743 55.556 0.00 0.00 41.60 5.28
2769 3178 5.348179 CGCATCAAATTATCTGCCACAAAAA 59.652 36.000 0.00 0.00 0.00 1.94
2770 3179 4.863689 CGCATCAAATTATCTGCCACAAAA 59.136 37.500 0.00 0.00 0.00 2.44
2771 3180 4.082300 ACGCATCAAATTATCTGCCACAAA 60.082 37.500 0.00 0.00 0.00 2.83
2772 3181 3.443329 ACGCATCAAATTATCTGCCACAA 59.557 39.130 0.00 0.00 0.00 3.33
2773 3182 3.016031 ACGCATCAAATTATCTGCCACA 58.984 40.909 0.00 0.00 0.00 4.17
2774 3183 3.065233 TCACGCATCAAATTATCTGCCAC 59.935 43.478 0.00 0.00 0.00 5.01
2775 3184 3.277715 TCACGCATCAAATTATCTGCCA 58.722 40.909 0.00 0.00 0.00 4.92
2776 3185 3.304257 CCTCACGCATCAAATTATCTGCC 60.304 47.826 0.00 0.00 0.00 4.85
2777 3186 3.313526 ACCTCACGCATCAAATTATCTGC 59.686 43.478 0.00 0.00 0.00 4.26
2778 3187 4.813161 AGACCTCACGCATCAAATTATCTG 59.187 41.667 0.00 0.00 0.00 2.90
2779 3188 5.028549 AGACCTCACGCATCAAATTATCT 57.971 39.130 0.00 0.00 0.00 1.98
2780 3189 5.986135 AGTAGACCTCACGCATCAAATTATC 59.014 40.000 0.00 0.00 0.00 1.75
2781 3190 5.918608 AGTAGACCTCACGCATCAAATTAT 58.081 37.500 0.00 0.00 0.00 1.28
2782 3191 5.339008 AGTAGACCTCACGCATCAAATTA 57.661 39.130 0.00 0.00 0.00 1.40
2783 3192 4.184629 GAGTAGACCTCACGCATCAAATT 58.815 43.478 0.00 0.00 40.17 1.82
2784 3193 3.430929 GGAGTAGACCTCACGCATCAAAT 60.431 47.826 0.00 0.00 42.40 2.32
2785 3194 2.094182 GGAGTAGACCTCACGCATCAAA 60.094 50.000 0.00 0.00 42.40 2.69
2786 3195 1.476891 GGAGTAGACCTCACGCATCAA 59.523 52.381 0.00 0.00 42.40 2.57
2787 3196 1.103803 GGAGTAGACCTCACGCATCA 58.896 55.000 0.00 0.00 42.40 3.07
2788 3197 1.103803 TGGAGTAGACCTCACGCATC 58.896 55.000 0.00 0.00 42.40 3.91
2789 3198 1.557099 TTGGAGTAGACCTCACGCAT 58.443 50.000 0.00 0.00 42.40 4.73
2790 3199 1.334160 TTTGGAGTAGACCTCACGCA 58.666 50.000 0.00 0.00 42.40 5.24
2791 3200 2.674796 ATTTGGAGTAGACCTCACGC 57.325 50.000 0.00 0.00 42.40 5.34
2792 3201 4.566004 TGAAATTTGGAGTAGACCTCACG 58.434 43.478 0.00 0.00 42.40 4.35
2793 3202 5.998363 AGTTGAAATTTGGAGTAGACCTCAC 59.002 40.000 0.00 0.00 42.40 3.51
2794 3203 6.183361 TGAGTTGAAATTTGGAGTAGACCTCA 60.183 38.462 0.00 0.00 42.40 3.86
2795 3204 6.231211 TGAGTTGAAATTTGGAGTAGACCTC 58.769 40.000 0.00 0.00 39.67 3.85
2796 3205 6.187727 TGAGTTGAAATTTGGAGTAGACCT 57.812 37.500 0.00 0.00 0.00 3.85
2797 3206 7.454260 AATGAGTTGAAATTTGGAGTAGACC 57.546 36.000 0.00 0.00 0.00 3.85
2801 3210 9.567776 TGTCTAAATGAGTTGAAATTTGGAGTA 57.432 29.630 0.00 0.00 34.98 2.59
2802 3211 8.463930 TGTCTAAATGAGTTGAAATTTGGAGT 57.536 30.769 0.00 0.00 34.98 3.85
2803 3212 9.565213 GATGTCTAAATGAGTTGAAATTTGGAG 57.435 33.333 0.00 0.00 34.98 3.86
2804 3213 9.300681 AGATGTCTAAATGAGTTGAAATTTGGA 57.699 29.630 0.00 0.00 32.77 3.53
2805 3214 9.350357 CAGATGTCTAAATGAGTTGAAATTTGG 57.650 33.333 0.00 0.00 0.00 3.28
2808 3217 8.457261 GCTCAGATGTCTAAATGAGTTGAAATT 58.543 33.333 3.30 0.00 41.00 1.82
2809 3218 7.609146 TGCTCAGATGTCTAAATGAGTTGAAAT 59.391 33.333 3.30 0.00 41.00 2.17
2810 3219 6.936335 TGCTCAGATGTCTAAATGAGTTGAAA 59.064 34.615 3.30 0.00 41.00 2.69
2811 3220 6.466812 TGCTCAGATGTCTAAATGAGTTGAA 58.533 36.000 3.30 0.00 41.00 2.69
2812 3221 6.041423 TGCTCAGATGTCTAAATGAGTTGA 57.959 37.500 3.30 0.00 41.00 3.18
2813 3222 5.220624 GCTGCTCAGATGTCTAAATGAGTTG 60.221 44.000 0.29 0.00 41.00 3.16
2814 3223 4.874966 GCTGCTCAGATGTCTAAATGAGTT 59.125 41.667 0.29 0.00 41.00 3.01
2815 3224 4.161942 AGCTGCTCAGATGTCTAAATGAGT 59.838 41.667 0.00 0.00 41.00 3.41
2816 3225 4.695396 AGCTGCTCAGATGTCTAAATGAG 58.305 43.478 0.00 0.00 41.68 2.90
2817 3226 4.405036 AGAGCTGCTCAGATGTCTAAATGA 59.595 41.667 29.49 0.00 32.06 2.57
2818 3227 4.695396 AGAGCTGCTCAGATGTCTAAATG 58.305 43.478 29.49 0.00 32.06 2.32
2819 3228 4.499526 CGAGAGCTGCTCAGATGTCTAAAT 60.500 45.833 29.49 5.90 44.15 1.40
2820 3229 3.181492 CGAGAGCTGCTCAGATGTCTAAA 60.181 47.826 29.49 0.00 44.15 1.85
2821 3230 2.357323 CGAGAGCTGCTCAGATGTCTAA 59.643 50.000 29.49 0.00 44.15 2.10
2822 3231 1.946081 CGAGAGCTGCTCAGATGTCTA 59.054 52.381 29.49 0.00 44.15 2.59
2823 3232 0.740149 CGAGAGCTGCTCAGATGTCT 59.260 55.000 29.49 8.69 44.15 3.41
2824 3233 0.248990 CCGAGAGCTGCTCAGATGTC 60.249 60.000 29.49 17.18 44.15 3.06
2825 3234 1.815196 CCGAGAGCTGCTCAGATGT 59.185 57.895 29.49 10.20 44.15 3.06
2826 3235 1.592131 GCCGAGAGCTGCTCAGATG 60.592 63.158 29.49 16.14 44.15 2.90
2827 3236 1.611474 TTGCCGAGAGCTGCTCAGAT 61.611 55.000 29.49 10.97 44.15 2.90
2828 3237 1.820010 TTTGCCGAGAGCTGCTCAGA 61.820 55.000 29.49 7.15 44.15 3.27
2829 3238 0.952497 TTTTGCCGAGAGCTGCTCAG 60.952 55.000 29.49 21.79 44.15 3.35
2830 3239 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
2831 3240 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
2832 3241 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
2867 3276 9.281075 GAACAATACGTGAACAGTAAACTTTTT 57.719 29.630 0.00 0.00 0.00 1.94
2868 3277 8.671028 AGAACAATACGTGAACAGTAAACTTTT 58.329 29.630 0.00 0.00 0.00 2.27
2869 3278 8.120465 CAGAACAATACGTGAACAGTAAACTTT 58.880 33.333 0.00 0.00 0.00 2.66
2870 3279 7.493320 TCAGAACAATACGTGAACAGTAAACTT 59.507 33.333 0.00 0.00 0.00 2.66
2871 3280 6.982141 TCAGAACAATACGTGAACAGTAAACT 59.018 34.615 0.00 0.00 0.00 2.66
2872 3281 7.061634 GTCAGAACAATACGTGAACAGTAAAC 58.938 38.462 0.00 0.00 0.00 2.01
2873 3282 6.201425 GGTCAGAACAATACGTGAACAGTAAA 59.799 38.462 0.00 0.00 0.00 2.01
2874 3283 5.693104 GGTCAGAACAATACGTGAACAGTAA 59.307 40.000 0.00 0.00 0.00 2.24
2875 3284 5.224888 GGTCAGAACAATACGTGAACAGTA 58.775 41.667 0.00 0.00 0.00 2.74
2876 3285 4.056050 GGTCAGAACAATACGTGAACAGT 58.944 43.478 0.00 0.00 0.00 3.55
2877 3286 3.432252 GGGTCAGAACAATACGTGAACAG 59.568 47.826 0.00 0.00 0.00 3.16
2878 3287 3.181464 TGGGTCAGAACAATACGTGAACA 60.181 43.478 0.00 0.00 0.00 3.18
2879 3288 3.395639 TGGGTCAGAACAATACGTGAAC 58.604 45.455 0.00 0.00 0.00 3.18
2880 3289 3.755112 TGGGTCAGAACAATACGTGAA 57.245 42.857 0.00 0.00 0.00 3.18
2881 3290 3.755112 TTGGGTCAGAACAATACGTGA 57.245 42.857 0.00 0.00 0.00 4.35
2882 3291 5.153513 CAAATTGGGTCAGAACAATACGTG 58.846 41.667 0.00 0.00 36.36 4.49
2883 3292 4.825085 ACAAATTGGGTCAGAACAATACGT 59.175 37.500 0.00 0.00 36.36 3.57
2884 3293 5.371115 ACAAATTGGGTCAGAACAATACG 57.629 39.130 0.00 0.00 36.36 3.06
2885 3294 8.432110 AAAAACAAATTGGGTCAGAACAATAC 57.568 30.769 0.00 0.00 36.36 1.89
2908 3317 0.675633 GAGCAGCTCTTGGCCAAAAA 59.324 50.000 20.91 9.83 43.05 1.94
2909 3318 0.467844 TGAGCAGCTCTTGGCCAAAA 60.468 50.000 23.15 5.20 43.05 2.44
2910 3319 0.467844 TTGAGCAGCTCTTGGCCAAA 60.468 50.000 23.15 9.73 43.05 3.28
2911 3320 0.467844 TTTGAGCAGCTCTTGGCCAA 60.468 50.000 23.15 19.25 43.05 4.52
2912 3321 0.251474 ATTTGAGCAGCTCTTGGCCA 60.251 50.000 23.15 0.00 43.05 5.36
2913 3322 0.172803 CATTTGAGCAGCTCTTGGCC 59.827 55.000 23.15 0.00 43.05 5.36
2914 3323 0.886563 ACATTTGAGCAGCTCTTGGC 59.113 50.000 23.15 0.00 42.19 4.52
2915 3324 1.471684 GGACATTTGAGCAGCTCTTGG 59.528 52.381 23.15 12.17 0.00 3.61
2916 3325 2.156917 TGGACATTTGAGCAGCTCTTG 58.843 47.619 23.15 18.44 0.00 3.02
2917 3326 2.574006 TGGACATTTGAGCAGCTCTT 57.426 45.000 23.15 5.67 0.00 2.85
2918 3327 2.574006 TTGGACATTTGAGCAGCTCT 57.426 45.000 23.15 2.04 0.00 4.09
2919 3328 3.192001 TCATTTGGACATTTGAGCAGCTC 59.808 43.478 16.21 16.21 0.00 4.09
2920 3329 3.159472 TCATTTGGACATTTGAGCAGCT 58.841 40.909 0.00 0.00 0.00 4.24
2921 3330 3.057033 ACTCATTTGGACATTTGAGCAGC 60.057 43.478 10.25 0.00 39.33 5.25
2922 3331 4.778534 ACTCATTTGGACATTTGAGCAG 57.221 40.909 10.25 0.00 39.33 4.24
2923 3332 6.647334 TTAACTCATTTGGACATTTGAGCA 57.353 33.333 10.25 0.00 39.33 4.26
2924 3333 7.945033 TTTTAACTCATTTGGACATTTGAGC 57.055 32.000 10.25 0.00 39.33 4.26
2937 3346 9.687210 GAGGTCCGTTTTAAATTTTAACTCATT 57.313 29.630 0.00 0.00 0.00 2.57
2938 3347 8.852135 TGAGGTCCGTTTTAAATTTTAACTCAT 58.148 29.630 0.00 0.00 0.00 2.90
2939 3348 8.223177 TGAGGTCCGTTTTAAATTTTAACTCA 57.777 30.769 0.00 6.57 0.00 3.41
2940 3349 9.124807 CATGAGGTCCGTTTTAAATTTTAACTC 57.875 33.333 0.00 4.42 0.00 3.01
2941 3350 7.597369 GCATGAGGTCCGTTTTAAATTTTAACT 59.403 33.333 0.00 0.00 0.00 2.24
2942 3351 7.382759 TGCATGAGGTCCGTTTTAAATTTTAAC 59.617 33.333 0.00 1.10 0.00 2.01
2943 3352 7.434492 TGCATGAGGTCCGTTTTAAATTTTAA 58.566 30.769 0.00 0.00 0.00 1.52
2944 3353 6.982852 TGCATGAGGTCCGTTTTAAATTTTA 58.017 32.000 0.00 0.00 0.00 1.52
2945 3354 5.848406 TGCATGAGGTCCGTTTTAAATTTT 58.152 33.333 0.00 0.00 0.00 1.82
2946 3355 5.461032 TGCATGAGGTCCGTTTTAAATTT 57.539 34.783 0.00 0.00 0.00 1.82
2947 3356 5.184864 TGATGCATGAGGTCCGTTTTAAATT 59.815 36.000 2.46 0.00 0.00 1.82
2948 3357 4.704540 TGATGCATGAGGTCCGTTTTAAAT 59.295 37.500 2.46 0.00 0.00 1.40
2949 3358 4.075682 TGATGCATGAGGTCCGTTTTAAA 58.924 39.130 2.46 0.00 0.00 1.52
2950 3359 3.680490 TGATGCATGAGGTCCGTTTTAA 58.320 40.909 2.46 0.00 0.00 1.52
2951 3360 3.342377 TGATGCATGAGGTCCGTTTTA 57.658 42.857 2.46 0.00 0.00 1.52
2952 3361 2.198827 TGATGCATGAGGTCCGTTTT 57.801 45.000 2.46 0.00 0.00 2.43
2953 3362 3.955145 TGATGCATGAGGTCCGTTT 57.045 47.368 2.46 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.