Multiple sequence alignment - TraesCS7B01G084000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G084000 chr7B 100.000 2639 0 0 1 2639 94631711 94629073 0.000000e+00 4874.0
1 TraesCS7B01G084000 chr7A 94.295 1788 62 14 43 1807 131938194 131936424 0.000000e+00 2700.0
2 TraesCS7B01G084000 chr7A 89.209 278 27 2 1904 2180 131935823 131935548 6.990000e-91 344.0
3 TraesCS7B01G084000 chr7A 87.815 238 22 5 2166 2397 131883510 131883274 3.350000e-69 272.0
4 TraesCS7B01G084000 chr7D 95.392 1606 56 7 210 1807 133328444 133326849 0.000000e+00 2540.0
5 TraesCS7B01G084000 chr7D 90.496 484 40 6 1902 2381 133323891 133323410 3.710000e-178 634.0
6 TraesCS7B01G084000 chr7D 98.925 93 1 0 2545 2637 626805619 626805711 1.620000e-37 167.0
7 TraesCS7B01G084000 chr7D 94.444 54 3 0 1828 1881 133326790 133326843 1.680000e-12 84.2
8 TraesCS7B01G084000 chr2B 89.407 708 66 7 937 1639 51228693 51229396 0.000000e+00 883.0
9 TraesCS7B01G084000 chr2B 91.304 115 6 4 2523 2635 131318958 131318846 1.260000e-33 154.0
10 TraesCS7B01G084000 chr2B 92.035 113 2 5 2529 2637 732252805 732252914 4.550000e-33 152.0
11 TraesCS7B01G084000 chr2D 88.608 711 70 9 937 1640 30980131 30979425 0.000000e+00 854.0
12 TraesCS7B01G084000 chr2D 85.414 713 78 11 937 1640 30935633 30934938 0.000000e+00 717.0
13 TraesCS7B01G084000 chr2A 88.235 714 70 11 937 1640 33271086 33270377 0.000000e+00 841.0
14 TraesCS7B01G084000 chr3D 100.000 89 0 0 2547 2635 611457759 611457671 5.840000e-37 165.0
15 TraesCS7B01G084000 chr6D 96.939 98 2 1 2539 2635 458236844 458236941 2.100000e-36 163.0
16 TraesCS7B01G084000 chr6D 96.939 98 2 1 2539 2635 458272213 458272310 2.100000e-36 163.0
17 TraesCS7B01G084000 chr6B 94.286 105 3 3 2536 2637 250878723 250878827 9.780000e-35 158.0
18 TraesCS7B01G084000 chr4B 97.802 91 1 1 2546 2635 491071644 491071554 3.520000e-34 156.0
19 TraesCS7B01G084000 chr6A 92.661 109 3 5 2533 2637 595404418 595404311 4.550000e-33 152.0
20 TraesCS7B01G084000 chr1B 86.567 67 9 0 11 77 15184337 15184271 1.010000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G084000 chr7B 94629073 94631711 2638 True 4874 4874 100.000 1 2639 1 chr7B.!!$R1 2638
1 TraesCS7B01G084000 chr7A 131935548 131938194 2646 True 1522 2700 91.752 43 2180 2 chr7A.!!$R2 2137
2 TraesCS7B01G084000 chr7D 133323410 133328444 5034 True 1587 2540 92.944 210 2381 2 chr7D.!!$R1 2171
3 TraesCS7B01G084000 chr2B 51228693 51229396 703 False 883 883 89.407 937 1639 1 chr2B.!!$F1 702
4 TraesCS7B01G084000 chr2D 30979425 30980131 706 True 854 854 88.608 937 1640 1 chr2D.!!$R2 703
5 TraesCS7B01G084000 chr2D 30934938 30935633 695 True 717 717 85.414 937 1640 1 chr2D.!!$R1 703
6 TraesCS7B01G084000 chr2A 33270377 33271086 709 True 841 841 88.235 937 1640 1 chr2A.!!$R1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 857 0.035439 TCCCAAAAGATCCGGACAGC 60.035 55.0 6.12 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2491 5570 0.033642 GACTATCTACAAGCCGGGGC 59.966 60.0 2.18 0.18 42.33 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.162592 AGGGTGTGTGTGCATGTG 57.837 55.556 0.00 0.00 0.00 3.21
18 19 1.227102 AGGGTGTGTGTGCATGTGT 59.773 52.632 0.00 0.00 0.00 3.72
19 20 0.395586 AGGGTGTGTGTGCATGTGTT 60.396 50.000 0.00 0.00 0.00 3.32
20 21 0.459489 GGGTGTGTGTGCATGTGTTT 59.541 50.000 0.00 0.00 0.00 2.83
21 22 1.678627 GGGTGTGTGTGCATGTGTTTA 59.321 47.619 0.00 0.00 0.00 2.01
22 23 2.295909 GGGTGTGTGTGCATGTGTTTAT 59.704 45.455 0.00 0.00 0.00 1.40
23 24 3.504134 GGGTGTGTGTGCATGTGTTTATA 59.496 43.478 0.00 0.00 0.00 0.98
24 25 4.379394 GGGTGTGTGTGCATGTGTTTATAG 60.379 45.833 0.00 0.00 0.00 1.31
25 26 4.379394 GGTGTGTGTGCATGTGTTTATAGG 60.379 45.833 0.00 0.00 0.00 2.57
26 27 4.454161 GTGTGTGTGCATGTGTTTATAGGA 59.546 41.667 0.00 0.00 0.00 2.94
27 28 5.049060 GTGTGTGTGCATGTGTTTATAGGAA 60.049 40.000 0.00 0.00 0.00 3.36
28 29 5.709631 TGTGTGTGCATGTGTTTATAGGAAT 59.290 36.000 0.00 0.00 0.00 3.01
29 30 6.029607 GTGTGTGCATGTGTTTATAGGAATG 58.970 40.000 0.00 0.00 0.00 2.67
30 31 5.942826 TGTGTGCATGTGTTTATAGGAATGA 59.057 36.000 0.00 0.00 0.00 2.57
31 32 6.093909 TGTGTGCATGTGTTTATAGGAATGAG 59.906 38.462 0.00 0.00 0.00 2.90
32 33 6.094048 GTGTGCATGTGTTTATAGGAATGAGT 59.906 38.462 0.00 0.00 0.00 3.41
33 34 6.093909 TGTGCATGTGTTTATAGGAATGAGTG 59.906 38.462 0.00 0.00 0.00 3.51
34 35 6.094048 GTGCATGTGTTTATAGGAATGAGTGT 59.906 38.462 0.00 0.00 0.00 3.55
35 36 7.279981 GTGCATGTGTTTATAGGAATGAGTGTA 59.720 37.037 0.00 0.00 0.00 2.90
36 37 7.992608 TGCATGTGTTTATAGGAATGAGTGTAT 59.007 33.333 0.00 0.00 0.00 2.29
37 38 8.285394 GCATGTGTTTATAGGAATGAGTGTATG 58.715 37.037 0.00 0.00 0.00 2.39
38 39 9.330063 CATGTGTTTATAGGAATGAGTGTATGT 57.670 33.333 0.00 0.00 0.00 2.29
39 40 8.716646 TGTGTTTATAGGAATGAGTGTATGTG 57.283 34.615 0.00 0.00 0.00 3.21
40 41 7.279981 TGTGTTTATAGGAATGAGTGTATGTGC 59.720 37.037 0.00 0.00 0.00 4.57
41 42 7.279981 GTGTTTATAGGAATGAGTGTATGTGCA 59.720 37.037 0.00 0.00 0.00 4.57
53 54 8.856490 TGAGTGTATGTGCATATATATAAGCG 57.144 34.615 13.63 0.48 30.14 4.68
57 58 7.704899 GTGTATGTGCATATATATAAGCGTCCA 59.295 37.037 13.63 10.74 30.14 4.02
58 59 7.704899 TGTATGTGCATATATATAAGCGTCCAC 59.295 37.037 13.63 7.91 30.14 4.02
63 64 6.090223 TGCATATATATAAGCGTCCACGTTTG 59.910 38.462 13.63 0.00 42.49 2.93
69 70 1.153353 AGCGTCCACGTTTGTATTGG 58.847 50.000 0.36 0.00 42.22 3.16
89 90 9.678941 GTATTGGGTTGAAAGAGAAAAACTAAG 57.321 33.333 0.00 0.00 0.00 2.18
98 99 7.170998 TGAAAGAGAAAAACTAAGTAAGAGCCG 59.829 37.037 0.00 0.00 0.00 5.52
118 119 4.253685 CCGAGAAATGCCCGACATATTAT 58.746 43.478 0.00 0.00 38.34 1.28
119 120 5.416083 CCGAGAAATGCCCGACATATTATA 58.584 41.667 0.00 0.00 38.34 0.98
121 122 6.036083 CCGAGAAATGCCCGACATATTATAAG 59.964 42.308 0.00 0.00 38.34 1.73
122 123 6.036083 CGAGAAATGCCCGACATATTATAAGG 59.964 42.308 0.00 0.00 38.34 2.69
123 124 6.180472 AGAAATGCCCGACATATTATAAGGG 58.820 40.000 1.63 1.63 38.34 3.95
124 125 3.992943 TGCCCGACATATTATAAGGGG 57.007 47.619 7.20 4.46 39.24 4.79
125 126 3.253220 TGCCCGACATATTATAAGGGGT 58.747 45.455 7.20 0.00 39.24 4.95
140 149 3.538634 AGGGGTCACTCTATTTTACGC 57.461 47.619 0.00 0.00 0.00 4.42
141 150 2.835764 AGGGGTCACTCTATTTTACGCA 59.164 45.455 0.00 0.00 0.00 5.24
164 173 7.222224 CGCATAGAAACTTTTTCGGTAGTCTAT 59.778 37.037 0.00 0.00 30.77 1.98
165 174 9.525409 GCATAGAAACTTTTTCGGTAGTCTATA 57.475 33.333 0.00 0.00 30.17 1.31
184 193 7.381839 GTCTATAGAGACGCTTTTGTTTTACG 58.618 38.462 1.64 0.00 42.73 3.18
188 197 2.041244 GACGCTTTTGTTTTACGCAGG 58.959 47.619 0.00 0.00 0.00 4.85
191 200 2.796735 CGCTTTTGTTTTACGCAGGGTT 60.797 45.455 0.00 0.00 0.00 4.11
199 208 4.060205 GTTTTACGCAGGGTTTAGAGACA 58.940 43.478 0.00 0.00 0.00 3.41
381 390 3.708121 AGGCATCACACATATCACTCTCA 59.292 43.478 0.00 0.00 0.00 3.27
393 402 7.328982 CACATATCACTCTCAGAATATGCTGTC 59.671 40.741 10.66 0.00 37.20 3.51
400 409 5.993055 TCTCAGAATATGCTGTCCATGAAA 58.007 37.500 10.66 0.00 37.20 2.69
449 472 4.681025 AGCAGTTAAAATTTCACATGCACG 59.319 37.500 16.09 0.00 34.93 5.34
471 494 2.286418 CCCGATATCTCGTTTTGCAAGC 60.286 50.000 0.00 0.00 43.49 4.01
472 495 2.609459 CCGATATCTCGTTTTGCAAGCT 59.391 45.455 0.00 0.00 43.49 3.74
473 496 3.802139 CCGATATCTCGTTTTGCAAGCTA 59.198 43.478 0.00 0.00 43.49 3.32
474 497 4.084849 CCGATATCTCGTTTTGCAAGCTAG 60.085 45.833 0.00 0.00 43.49 3.42
546 569 4.517075 TGTCGATCACAGCAAAATACCAAA 59.483 37.500 0.00 0.00 0.00 3.28
547 570 4.851558 GTCGATCACAGCAAAATACCAAAC 59.148 41.667 0.00 0.00 0.00 2.93
664 687 2.609459 GCATGAGACAATGGGTAGTTCG 59.391 50.000 0.00 0.00 0.00 3.95
834 857 0.035439 TCCCAAAAGATCCGGACAGC 60.035 55.000 6.12 0.00 0.00 4.40
859 882 1.153823 CACGTGAACCCTAGCTCGG 60.154 63.158 10.90 0.00 0.00 4.63
875 898 1.787155 CTCGGTCGCCAAAGAATATCG 59.213 52.381 0.00 0.00 0.00 2.92
879 902 1.190323 GTCGCCAAAGAATATCGCTCG 59.810 52.381 0.00 0.00 0.00 5.03
959 983 4.821805 CCTATATAAACACCACAAGGGCAG 59.178 45.833 0.00 0.00 42.05 4.85
1041 1072 0.539051 CCGTGCTCATCTCCTTCCTT 59.461 55.000 0.00 0.00 0.00 3.36
1045 1076 3.068732 CGTGCTCATCTCCTTCCTTATCA 59.931 47.826 0.00 0.00 0.00 2.15
1060 1091 1.053835 TATCATGCCCTTCTCCGCCA 61.054 55.000 0.00 0.00 0.00 5.69
1335 1366 4.527583 GCCGCCTCTGAGCTCCTG 62.528 72.222 12.15 4.27 0.00 3.86
1338 1369 1.294780 CGCCTCTGAGCTCCTGTTT 59.705 57.895 12.15 0.00 0.00 2.83
1404 1435 0.825410 ACACCGTGTACACCAAGACA 59.175 50.000 20.11 0.00 0.00 3.41
1641 1672 2.174969 CGGCGGCAGCGGTTAATTA 61.175 57.895 10.53 0.00 46.35 1.40
1860 2197 9.926158 ATGCAATAAAAAGATTGTGTACATCAA 57.074 25.926 0.00 6.10 38.77 2.57
1871 2208 8.446489 GATTGTGTACATCAATCGAGATAGAG 57.554 38.462 23.24 0.00 40.69 2.43
1872 2209 6.944234 TGTGTACATCAATCGAGATAGAGT 57.056 37.500 0.00 0.00 0.00 3.24
1873 2210 6.960468 TGTGTACATCAATCGAGATAGAGTC 58.040 40.000 0.00 0.00 0.00 3.36
1874 2211 6.017026 TGTGTACATCAATCGAGATAGAGTCC 60.017 42.308 0.00 0.00 0.00 3.85
1876 2213 4.390264 ACATCAATCGAGATAGAGTCCGA 58.610 43.478 0.00 0.00 35.20 4.55
1878 2215 3.403968 TCAATCGAGATAGAGTCCGAGG 58.596 50.000 0.00 0.00 34.56 4.63
1882 2629 1.202663 CGAGATAGAGTCCGAGGGTGA 60.203 57.143 0.00 0.00 0.00 4.02
1926 2673 5.168569 TCTTAGACACAACATCATTCCGAC 58.831 41.667 0.00 0.00 0.00 4.79
1932 2679 4.761739 ACACAACATCATTCCGACAATTCT 59.238 37.500 0.00 0.00 0.00 2.40
1953 5031 8.910351 ATTCTAAGTTATCCAACATAAGGCTC 57.090 34.615 0.00 0.00 37.10 4.70
1965 5043 1.410004 TAAGGCTCATACTCCCACCG 58.590 55.000 0.00 0.00 0.00 4.94
1976 5054 3.851458 ACTCCCACCGGTATTTTATCC 57.149 47.619 6.87 0.00 0.00 2.59
1978 5056 2.103601 CTCCCACCGGTATTTTATCCGT 59.896 50.000 6.87 0.00 44.51 4.69
2000 5078 3.330110 TCCCATGCAACCAATTTCCAAAT 59.670 39.130 0.00 0.00 0.00 2.32
2004 5082 7.072202 TCCCATGCAACCAATTTCCAAATATAT 59.928 33.333 0.00 0.00 0.00 0.86
2037 5115 8.012957 ACAAGTATGTGGTGGAACATTAAAAA 57.987 30.769 0.00 0.00 41.09 1.94
2040 5118 7.657336 AGTATGTGGTGGAACATTAAAAACAG 58.343 34.615 0.00 0.00 44.52 3.16
2056 5134 4.457496 AGCATGGACCGTCTGCCG 62.457 66.667 8.69 0.00 36.56 5.69
2072 5150 0.452784 GCCGTAGCAAGCACGAAAAG 60.453 55.000 15.11 3.86 41.91 2.27
2092 5170 3.026694 AGGGGCAAAGAGAAATATGTGC 58.973 45.455 0.00 0.00 0.00 4.57
2150 5229 1.530323 ACCACCCAGTTACGATTTGC 58.470 50.000 0.00 0.00 0.00 3.68
2158 5237 5.583457 ACCCAGTTACGATTTGCTATGTTAC 59.417 40.000 0.00 0.00 0.00 2.50
2205 5284 9.567776 TGTAAAGATACCAATCAAAACTCTTGA 57.432 29.630 0.00 0.00 34.28 3.02
2241 5320 4.782019 TTCAGGTTGCACATGTATTTCC 57.218 40.909 0.00 0.00 30.95 3.13
2249 5328 7.015195 AGGTTGCACATGTATTTCCTTTTAAGT 59.985 33.333 0.00 0.00 0.00 2.24
2250 5329 7.116233 GGTTGCACATGTATTTCCTTTTAAGTG 59.884 37.037 0.00 0.00 0.00 3.16
2263 5342 7.324388 TCCTTTTAAGTGGAATAGTGGAAGA 57.676 36.000 0.00 0.00 0.00 2.87
2267 5346 9.678941 CTTTTAAGTGGAATAGTGGAAGAAAAC 57.321 33.333 0.00 0.00 0.00 2.43
2268 5347 8.990163 TTTAAGTGGAATAGTGGAAGAAAACT 57.010 30.769 0.00 0.00 0.00 2.66
2283 5362 9.191479 TGGAAGAAAACTCCACTGTAATTTTTA 57.809 29.630 0.00 0.00 38.07 1.52
2284 5363 9.678941 GGAAGAAAACTCCACTGTAATTTTTAG 57.321 33.333 0.00 0.00 32.77 1.85
2352 5431 3.208747 AGCCAAAGACGGAAGAGAAAA 57.791 42.857 0.00 0.00 0.00 2.29
2378 5457 8.831715 AAAAGAAAAAGAAAGAACAAAGCAGA 57.168 26.923 0.00 0.00 0.00 4.26
2382 5461 8.712363 AGAAAAAGAAAGAACAAAGCAGAAAAC 58.288 29.630 0.00 0.00 0.00 2.43
2383 5462 8.607441 AAAAAGAAAGAACAAAGCAGAAAACT 57.393 26.923 0.00 0.00 0.00 2.66
2384 5463 9.705290 AAAAAGAAAGAACAAAGCAGAAAACTA 57.295 25.926 0.00 0.00 0.00 2.24
2385 5464 9.705290 AAAAGAAAGAACAAAGCAGAAAACTAA 57.295 25.926 0.00 0.00 0.00 2.24
2386 5465 8.689251 AAGAAAGAACAAAGCAGAAAACTAAC 57.311 30.769 0.00 0.00 0.00 2.34
2387 5466 7.258441 AGAAAGAACAAAGCAGAAAACTAACC 58.742 34.615 0.00 0.00 0.00 2.85
2388 5467 6.524101 AAGAACAAAGCAGAAAACTAACCA 57.476 33.333 0.00 0.00 0.00 3.67
2389 5468 6.136541 AGAACAAAGCAGAAAACTAACCAG 57.863 37.500 0.00 0.00 0.00 4.00
2390 5469 5.885912 AGAACAAAGCAGAAAACTAACCAGA 59.114 36.000 0.00 0.00 0.00 3.86
2391 5470 5.500645 ACAAAGCAGAAAACTAACCAGAC 57.499 39.130 0.00 0.00 0.00 3.51
2392 5471 4.947388 ACAAAGCAGAAAACTAACCAGACA 59.053 37.500 0.00 0.00 0.00 3.41
2393 5472 5.417580 ACAAAGCAGAAAACTAACCAGACAA 59.582 36.000 0.00 0.00 0.00 3.18
2394 5473 5.500645 AAGCAGAAAACTAACCAGACAAC 57.499 39.130 0.00 0.00 0.00 3.32
2395 5474 3.883489 AGCAGAAAACTAACCAGACAACC 59.117 43.478 0.00 0.00 0.00 3.77
2396 5475 3.883489 GCAGAAAACTAACCAGACAACCT 59.117 43.478 0.00 0.00 0.00 3.50
2397 5476 4.338400 GCAGAAAACTAACCAGACAACCTT 59.662 41.667 0.00 0.00 0.00 3.50
2398 5477 5.163550 GCAGAAAACTAACCAGACAACCTTT 60.164 40.000 0.00 0.00 0.00 3.11
2399 5478 6.627287 GCAGAAAACTAACCAGACAACCTTTT 60.627 38.462 0.00 0.00 0.00 2.27
2400 5479 6.751888 CAGAAAACTAACCAGACAACCTTTTG 59.248 38.462 0.00 0.00 38.83 2.44
2402 5481 3.562182 ACTAACCAGACAACCTTTTGGG 58.438 45.455 0.00 0.00 46.08 4.12
2414 5493 2.374184 CCTTTTGGGTCTGTTGTGACA 58.626 47.619 0.00 0.00 38.61 3.58
2415 5494 2.358898 CCTTTTGGGTCTGTTGTGACAG 59.641 50.000 0.20 0.20 44.31 3.51
2416 5495 4.800500 CCTTTTGGGTCTGTTGTGACAGG 61.800 52.174 6.70 0.00 43.71 4.00
2422 5501 4.966123 TGTTGTGACAGGGCGAAA 57.034 50.000 0.00 0.00 0.00 3.46
2423 5502 3.176728 TGTTGTGACAGGGCGAAAA 57.823 47.368 0.00 0.00 0.00 2.29
2424 5503 1.021202 TGTTGTGACAGGGCGAAAAG 58.979 50.000 0.00 0.00 0.00 2.27
2425 5504 0.310854 GTTGTGACAGGGCGAAAAGG 59.689 55.000 0.00 0.00 0.00 3.11
2426 5505 0.181587 TTGTGACAGGGCGAAAAGGA 59.818 50.000 0.00 0.00 0.00 3.36
2427 5506 0.250295 TGTGACAGGGCGAAAAGGAG 60.250 55.000 0.00 0.00 0.00 3.69
2428 5507 0.955919 GTGACAGGGCGAAAAGGAGG 60.956 60.000 0.00 0.00 0.00 4.30
2429 5508 1.375326 GACAGGGCGAAAAGGAGGT 59.625 57.895 0.00 0.00 0.00 3.85
2430 5509 0.955919 GACAGGGCGAAAAGGAGGTG 60.956 60.000 0.00 0.00 0.00 4.00
2431 5510 1.374947 CAGGGCGAAAAGGAGGTGA 59.625 57.895 0.00 0.00 0.00 4.02
2432 5511 0.955919 CAGGGCGAAAAGGAGGTGAC 60.956 60.000 0.00 0.00 0.00 3.67
2433 5512 1.674651 GGGCGAAAAGGAGGTGACC 60.675 63.158 0.00 0.00 0.00 4.02
2434 5513 1.072505 GGCGAAAAGGAGGTGACCA 59.927 57.895 3.63 0.00 0.00 4.02
2435 5514 0.322546 GGCGAAAAGGAGGTGACCAT 60.323 55.000 3.63 0.00 0.00 3.55
2436 5515 0.804989 GCGAAAAGGAGGTGACCATG 59.195 55.000 3.63 0.00 0.00 3.66
2437 5516 1.882352 GCGAAAAGGAGGTGACCATGT 60.882 52.381 3.63 0.00 0.00 3.21
2438 5517 2.504367 CGAAAAGGAGGTGACCATGTT 58.496 47.619 3.63 0.00 0.00 2.71
2439 5518 2.484264 CGAAAAGGAGGTGACCATGTTC 59.516 50.000 3.63 0.00 0.00 3.18
2440 5519 2.586648 AAAGGAGGTGACCATGTTCC 57.413 50.000 3.63 1.30 0.00 3.62
2441 5520 0.698818 AAGGAGGTGACCATGTTCCC 59.301 55.000 3.63 0.00 0.00 3.97
2442 5521 0.178861 AGGAGGTGACCATGTTCCCT 60.179 55.000 3.63 0.83 0.00 4.20
2443 5522 0.698818 GGAGGTGACCATGTTCCCTT 59.301 55.000 3.63 0.00 0.00 3.95
2444 5523 1.913419 GGAGGTGACCATGTTCCCTTA 59.087 52.381 3.63 0.00 0.00 2.69
2445 5524 2.092914 GGAGGTGACCATGTTCCCTTAG 60.093 54.545 3.63 0.00 0.00 2.18
2446 5525 2.572104 GAGGTGACCATGTTCCCTTAGT 59.428 50.000 3.63 0.00 0.00 2.24
2447 5526 2.572104 AGGTGACCATGTTCCCTTAGTC 59.428 50.000 3.63 0.00 0.00 2.59
2448 5527 2.572104 GGTGACCATGTTCCCTTAGTCT 59.428 50.000 0.00 0.00 0.00 3.24
2449 5528 3.600388 GTGACCATGTTCCCTTAGTCTG 58.400 50.000 0.00 0.00 0.00 3.51
2450 5529 2.027192 TGACCATGTTCCCTTAGTCTGC 60.027 50.000 0.00 0.00 0.00 4.26
2451 5530 1.282157 ACCATGTTCCCTTAGTCTGCC 59.718 52.381 0.00 0.00 0.00 4.85
2452 5531 1.656652 CATGTTCCCTTAGTCTGCCG 58.343 55.000 0.00 0.00 0.00 5.69
2453 5532 0.107654 ATGTTCCCTTAGTCTGCCGC 60.108 55.000 0.00 0.00 0.00 6.53
2454 5533 1.192146 TGTTCCCTTAGTCTGCCGCT 61.192 55.000 0.00 0.00 0.00 5.52
2455 5534 0.460459 GTTCCCTTAGTCTGCCGCTC 60.460 60.000 0.00 0.00 0.00 5.03
2456 5535 1.614241 TTCCCTTAGTCTGCCGCTCC 61.614 60.000 0.00 0.00 0.00 4.70
2457 5536 2.105128 CCTTAGTCTGCCGCTCCG 59.895 66.667 0.00 0.00 0.00 4.63
2477 5556 2.683933 GGTGGGAGAGCGAGGGAA 60.684 66.667 0.00 0.00 0.00 3.97
2478 5557 2.579738 GTGGGAGAGCGAGGGAAC 59.420 66.667 0.00 0.00 0.00 3.62
2499 5578 4.964241 GGATCTAGGGCCCCGGCT 62.964 72.222 21.43 1.11 41.60 5.52
2500 5579 2.849646 GATCTAGGGCCCCGGCTT 60.850 66.667 21.43 0.62 41.60 4.35
2501 5580 3.171388 ATCTAGGGCCCCGGCTTG 61.171 66.667 21.43 0.00 41.60 4.01
2502 5581 4.733725 TCTAGGGCCCCGGCTTGT 62.734 66.667 21.43 0.00 41.60 3.16
2503 5582 2.615191 ATCTAGGGCCCCGGCTTGTA 62.615 60.000 21.43 0.38 41.60 2.41
2504 5583 2.766651 TAGGGCCCCGGCTTGTAG 60.767 66.667 21.43 0.00 41.60 2.74
2505 5584 3.320411 TAGGGCCCCGGCTTGTAGA 62.320 63.158 21.43 0.00 41.60 2.59
2506 5585 2.615191 TAGGGCCCCGGCTTGTAGAT 62.615 60.000 21.43 0.00 41.60 1.98
2507 5586 2.144738 GGGCCCCGGCTTGTAGATA 61.145 63.158 12.23 0.00 41.60 1.98
2508 5587 1.371558 GGCCCCGGCTTGTAGATAG 59.628 63.158 5.55 0.00 41.60 2.08
2509 5588 1.408453 GGCCCCGGCTTGTAGATAGT 61.408 60.000 5.55 0.00 41.60 2.12
2510 5589 0.033642 GCCCCGGCTTGTAGATAGTC 59.966 60.000 0.00 0.00 38.26 2.59
2511 5590 0.314302 CCCCGGCTTGTAGATAGTCG 59.686 60.000 0.00 0.00 40.25 4.18
2513 5592 3.867723 CGGCTTGTAGATAGTCGGG 57.132 57.895 0.00 0.00 37.10 5.14
2514 5593 0.318784 CGGCTTGTAGATAGTCGGGC 60.319 60.000 0.00 0.00 37.10 6.13
2515 5594 1.041437 GGCTTGTAGATAGTCGGGCT 58.959 55.000 0.00 0.00 0.00 5.19
2516 5595 2.236766 GGCTTGTAGATAGTCGGGCTA 58.763 52.381 0.00 0.00 0.00 3.93
2517 5596 2.229302 GGCTTGTAGATAGTCGGGCTAG 59.771 54.545 0.00 0.00 32.45 3.42
2518 5597 2.885894 GCTTGTAGATAGTCGGGCTAGT 59.114 50.000 0.00 0.00 32.45 2.57
2519 5598 3.304794 GCTTGTAGATAGTCGGGCTAGTG 60.305 52.174 0.00 0.00 32.45 2.74
2520 5599 2.860009 TGTAGATAGTCGGGCTAGTGG 58.140 52.381 0.00 0.00 32.45 4.00
2521 5600 2.174210 TGTAGATAGTCGGGCTAGTGGT 59.826 50.000 0.00 0.00 32.45 4.16
2522 5601 1.984066 AGATAGTCGGGCTAGTGGTC 58.016 55.000 0.00 0.00 32.45 4.02
2523 5602 1.495574 AGATAGTCGGGCTAGTGGTCT 59.504 52.381 0.00 0.00 32.45 3.85
2524 5603 2.091775 AGATAGTCGGGCTAGTGGTCTT 60.092 50.000 0.00 0.00 32.45 3.01
2525 5604 1.471119 TAGTCGGGCTAGTGGTCTTG 58.529 55.000 0.00 0.00 0.00 3.02
2526 5605 1.218316 GTCGGGCTAGTGGTCTTGG 59.782 63.158 0.00 0.00 0.00 3.61
2527 5606 2.125106 CGGGCTAGTGGTCTTGGC 60.125 66.667 0.00 0.00 40.08 4.52
2528 5607 2.125106 GGGCTAGTGGTCTTGGCG 60.125 66.667 0.00 0.00 41.22 5.69
2529 5608 2.125106 GGCTAGTGGTCTTGGCGG 60.125 66.667 0.00 0.00 33.43 6.13
2530 5609 2.663196 GCTAGTGGTCTTGGCGGT 59.337 61.111 0.00 0.00 0.00 5.68
2531 5610 1.741770 GCTAGTGGTCTTGGCGGTG 60.742 63.158 0.00 0.00 0.00 4.94
2532 5611 1.741770 CTAGTGGTCTTGGCGGTGC 60.742 63.158 0.00 0.00 0.00 5.01
2543 5622 2.568090 GCGGTGCCATTGAGTTGG 59.432 61.111 0.00 0.00 39.94 3.77
2544 5623 2.993471 GCGGTGCCATTGAGTTGGG 61.993 63.158 0.00 0.00 37.24 4.12
2545 5624 2.342650 CGGTGCCATTGAGTTGGGG 61.343 63.158 0.00 0.00 37.24 4.96
2546 5625 1.076549 GGTGCCATTGAGTTGGGGA 59.923 57.895 0.00 0.00 37.24 4.81
2547 5626 0.324645 GGTGCCATTGAGTTGGGGAT 60.325 55.000 0.00 0.00 37.24 3.85
2548 5627 1.560505 GTGCCATTGAGTTGGGGATT 58.439 50.000 0.00 0.00 37.24 3.01
2549 5628 1.205417 GTGCCATTGAGTTGGGGATTG 59.795 52.381 0.00 0.00 37.24 2.67
2550 5629 1.203162 TGCCATTGAGTTGGGGATTGT 60.203 47.619 0.00 0.00 37.24 2.71
2551 5630 1.901833 GCCATTGAGTTGGGGATTGTT 59.098 47.619 0.00 0.00 37.24 2.83
2552 5631 2.354003 GCCATTGAGTTGGGGATTGTTG 60.354 50.000 0.00 0.00 37.24 3.33
2553 5632 2.234414 CCATTGAGTTGGGGATTGTTGG 59.766 50.000 0.00 0.00 32.80 3.77
2554 5633 2.008242 TTGAGTTGGGGATTGTTGGG 57.992 50.000 0.00 0.00 0.00 4.12
2555 5634 0.114168 TGAGTTGGGGATTGTTGGGG 59.886 55.000 0.00 0.00 0.00 4.96
2556 5635 0.407918 GAGTTGGGGATTGTTGGGGA 59.592 55.000 0.00 0.00 0.00 4.81
2557 5636 0.863956 AGTTGGGGATTGTTGGGGAA 59.136 50.000 0.00 0.00 0.00 3.97
2558 5637 0.973632 GTTGGGGATTGTTGGGGAAC 59.026 55.000 0.00 0.00 0.00 3.62
2559 5638 0.540830 TTGGGGATTGTTGGGGAACG 60.541 55.000 0.00 0.00 0.00 3.95
2560 5639 1.076014 GGGGATTGTTGGGGAACGT 59.924 57.895 0.00 0.00 0.00 3.99
2561 5640 0.328926 GGGGATTGTTGGGGAACGTA 59.671 55.000 0.00 0.00 0.00 3.57
2562 5641 1.680860 GGGGATTGTTGGGGAACGTAG 60.681 57.143 0.00 0.00 0.00 3.51
2564 5643 2.236893 GGGATTGTTGGGGAACGTAGTA 59.763 50.000 0.00 0.00 45.00 1.82
2565 5644 3.307621 GGGATTGTTGGGGAACGTAGTAA 60.308 47.826 0.00 0.00 45.00 2.24
2566 5645 4.520179 GGATTGTTGGGGAACGTAGTAAT 58.480 43.478 0.00 0.00 45.00 1.89
2567 5646 4.945543 GGATTGTTGGGGAACGTAGTAATT 59.054 41.667 0.00 0.00 45.00 1.40
2568 5647 5.416639 GGATTGTTGGGGAACGTAGTAATTT 59.583 40.000 0.00 0.00 45.00 1.82
2569 5648 5.945466 TTGTTGGGGAACGTAGTAATTTC 57.055 39.130 0.00 0.00 45.00 2.17
2570 5649 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
2571 5650 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
2572 5651 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
2573 5652 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
2574 5653 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
2575 5654 7.527568 TGGGGAACGTAGTAATTTCAAAAAT 57.472 32.000 0.00 0.00 45.00 1.82
2576 5655 7.953752 TGGGGAACGTAGTAATTTCAAAAATT 58.046 30.769 0.00 3.43 45.00 1.82
2577 5656 8.422566 TGGGGAACGTAGTAATTTCAAAAATTT 58.577 29.630 3.24 0.00 45.00 1.82
2578 5657 8.918658 GGGGAACGTAGTAATTTCAAAAATTTC 58.081 33.333 3.24 0.00 45.00 2.17
2579 5658 8.918658 GGGAACGTAGTAATTTCAAAAATTTCC 58.081 33.333 3.24 3.13 45.00 3.13
2580 5659 9.687210 GGAACGTAGTAATTTCAAAAATTTCCT 57.313 29.630 3.24 3.62 45.00 3.36
2583 5662 9.815936 ACGTAGTAATTTCAAAAATTTCCTACG 57.184 29.630 28.37 28.37 41.94 3.51
2584 5663 8.782327 CGTAGTAATTTCAAAAATTTCCTACGC 58.218 33.333 24.45 10.35 38.26 4.42
2585 5664 9.615295 GTAGTAATTTCAAAAATTTCCTACGCA 57.385 29.630 3.24 0.00 0.00 5.24
2586 5665 8.515473 AGTAATTTCAAAAATTTCCTACGCAC 57.485 30.769 3.24 0.00 0.00 5.34
2587 5666 8.138712 AGTAATTTCAAAAATTTCCTACGCACA 58.861 29.630 3.24 0.00 0.00 4.57
2588 5667 6.763303 ATTTCAAAAATTTCCTACGCACAC 57.237 33.333 0.00 0.00 0.00 3.82
2590 5669 2.325509 AAAATTTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
2591 5670 1.231221 AAATTTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
2592 5671 1.231221 AATTTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
2593 5672 0.796312 ATTTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
2594 5673 0.249531 TTTCCTACGCACACGCAAGA 60.250 50.000 0.00 0.00 45.53 3.02
2595 5674 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
2596 5675 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
2597 5676 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
2598 5677 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
2599 5678 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
2600 5679 0.670239 ACGCACACGCAAGATCATGA 60.670 50.000 1.25 0.00 45.53 3.07
2601 5680 0.654160 CGCACACGCAAGATCATGAT 59.346 50.000 8.25 8.25 43.62 2.45
2602 5681 1.593793 CGCACACGCAAGATCATGATG 60.594 52.381 14.30 1.04 43.62 3.07
2603 5682 1.667212 GCACACGCAAGATCATGATGA 59.333 47.619 14.30 0.00 43.62 2.92
2604 5683 2.289820 GCACACGCAAGATCATGATGAT 59.710 45.455 14.30 7.81 37.74 2.45
2605 5684 3.848554 GCACACGCAAGATCATGATGATG 60.849 47.826 14.30 12.45 36.10 3.07
2606 5685 2.289820 ACACGCAAGATCATGATGATGC 59.710 45.455 23.24 23.24 37.20 3.91
2607 5686 2.289547 CACGCAAGATCATGATGATGCA 59.710 45.455 28.33 0.00 37.20 3.96
2608 5687 3.058224 CACGCAAGATCATGATGATGCAT 60.058 43.478 28.33 18.61 37.20 3.96
2609 5688 4.153475 CACGCAAGATCATGATGATGCATA 59.847 41.667 28.33 0.00 37.20 3.14
2610 5689 4.392138 ACGCAAGATCATGATGATGCATAG 59.608 41.667 28.33 19.73 37.20 2.23
2611 5690 4.663166 GCAAGATCATGATGATGCATAGC 58.337 43.478 26.11 5.99 37.20 2.97
2612 5691 4.156008 GCAAGATCATGATGATGCATAGCA 59.844 41.667 26.11 0.00 44.86 3.49
2613 5692 5.335661 GCAAGATCATGATGATGCATAGCAA 60.336 40.000 26.11 0.00 43.62 3.91
2614 5693 5.881777 AGATCATGATGATGCATAGCAAC 57.118 39.130 14.30 0.00 43.62 4.17
2615 5694 4.392138 AGATCATGATGATGCATAGCAACG 59.608 41.667 14.30 0.00 43.62 4.10
2616 5695 3.731089 TCATGATGATGCATAGCAACGA 58.269 40.909 0.00 0.00 43.62 3.85
2617 5696 3.744426 TCATGATGATGCATAGCAACGAG 59.256 43.478 0.00 0.00 43.62 4.18
2618 5697 3.457610 TGATGATGCATAGCAACGAGA 57.542 42.857 0.00 0.00 43.62 4.04
2619 5698 3.387397 TGATGATGCATAGCAACGAGAG 58.613 45.455 0.00 0.00 43.62 3.20
2620 5699 2.229675 TGATGCATAGCAACGAGAGG 57.770 50.000 0.00 0.00 43.62 3.69
2621 5700 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
2622 5701 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
2623 5702 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
2624 5703 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
2625 5704 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
2626 5705 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
2627 5706 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
2628 5707 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
2629 5708 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
2630 5709 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
2631 5710 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
2632 5711 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
2633 5712 1.316706 CGAGAGGGGAGAGTGTGTCC 61.317 65.000 0.00 0.00 0.00 4.02
2634 5713 0.251832 GAGAGGGGAGAGTGTGTCCA 60.252 60.000 0.00 0.00 35.57 4.02
2635 5714 0.415429 AGAGGGGAGAGTGTGTCCAT 59.585 55.000 0.00 0.00 35.57 3.41
2636 5715 0.539051 GAGGGGAGAGTGTGTCCATG 59.461 60.000 0.00 0.00 35.57 3.66
2637 5716 0.911525 AGGGGAGAGTGTGTCCATGG 60.912 60.000 4.97 4.97 35.57 3.66
2638 5717 0.909610 GGGGAGAGTGTGTCCATGGA 60.910 60.000 11.44 11.44 35.57 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.395586 AACACATGCACACACACCCT 60.396 50.000 0.00 0.00 0.00 4.34
1 2 0.459489 AAACACATGCACACACACCC 59.541 50.000 0.00 0.00 0.00 4.61
2 3 3.641437 ATAAACACATGCACACACACC 57.359 42.857 0.00 0.00 0.00 4.16
3 4 4.454161 TCCTATAAACACATGCACACACAC 59.546 41.667 0.00 0.00 0.00 3.82
4 5 4.646572 TCCTATAAACACATGCACACACA 58.353 39.130 0.00 0.00 0.00 3.72
5 6 5.621197 TTCCTATAAACACATGCACACAC 57.379 39.130 0.00 0.00 0.00 3.82
6 7 5.942826 TCATTCCTATAAACACATGCACACA 59.057 36.000 0.00 0.00 0.00 3.72
7 8 6.094048 ACTCATTCCTATAAACACATGCACAC 59.906 38.462 0.00 0.00 0.00 3.82
8 9 6.093909 CACTCATTCCTATAAACACATGCACA 59.906 38.462 0.00 0.00 0.00 4.57
9 10 6.094048 ACACTCATTCCTATAAACACATGCAC 59.906 38.462 0.00 0.00 0.00 4.57
10 11 6.179756 ACACTCATTCCTATAAACACATGCA 58.820 36.000 0.00 0.00 0.00 3.96
11 12 6.683974 ACACTCATTCCTATAAACACATGC 57.316 37.500 0.00 0.00 0.00 4.06
12 13 9.330063 ACATACACTCATTCCTATAAACACATG 57.670 33.333 0.00 0.00 0.00 3.21
13 14 9.330063 CACATACACTCATTCCTATAAACACAT 57.670 33.333 0.00 0.00 0.00 3.21
14 15 7.279981 GCACATACACTCATTCCTATAAACACA 59.720 37.037 0.00 0.00 0.00 3.72
15 16 7.279981 TGCACATACACTCATTCCTATAAACAC 59.720 37.037 0.00 0.00 0.00 3.32
16 17 7.334858 TGCACATACACTCATTCCTATAAACA 58.665 34.615 0.00 0.00 0.00 2.83
17 18 7.786178 TGCACATACACTCATTCCTATAAAC 57.214 36.000 0.00 0.00 0.00 2.01
27 28 9.468532 CGCTTATATATATGCACATACACTCAT 57.531 33.333 23.14 0.00 34.24 2.90
28 29 8.466798 ACGCTTATATATATGCACATACACTCA 58.533 33.333 23.14 0.00 34.24 3.41
29 30 8.858003 ACGCTTATATATATGCACATACACTC 57.142 34.615 23.14 0.00 34.24 3.51
30 31 7.921214 GGACGCTTATATATATGCACATACACT 59.079 37.037 23.14 2.89 34.24 3.55
31 32 7.704899 TGGACGCTTATATATATGCACATACAC 59.295 37.037 23.14 10.89 34.24 2.90
32 33 7.704899 GTGGACGCTTATATATATGCACATACA 59.295 37.037 23.14 14.91 34.24 2.29
33 34 7.096599 CGTGGACGCTTATATATATGCACATAC 60.097 40.741 23.14 16.57 34.24 2.39
34 35 6.915843 CGTGGACGCTTATATATATGCACATA 59.084 38.462 23.14 9.54 34.24 2.29
35 36 5.748630 CGTGGACGCTTATATATATGCACAT 59.251 40.000 23.14 12.41 34.24 3.21
36 37 5.099575 CGTGGACGCTTATATATATGCACA 58.900 41.667 23.14 17.26 34.24 4.57
37 38 5.100259 ACGTGGACGCTTATATATATGCAC 58.900 41.667 23.14 14.84 44.43 4.57
38 39 5.319140 ACGTGGACGCTTATATATATGCA 57.681 39.130 23.14 6.37 44.43 3.96
39 40 6.090358 ACAAACGTGGACGCTTATATATATGC 59.910 38.462 16.85 16.85 44.43 3.14
40 41 7.576750 ACAAACGTGGACGCTTATATATATG 57.423 36.000 5.44 0.00 44.43 1.78
41 42 9.865321 AATACAAACGTGGACGCTTATATATAT 57.135 29.630 0.00 0.00 44.43 0.86
53 54 2.879646 TCAACCCAATACAAACGTGGAC 59.120 45.455 0.00 0.00 34.05 4.02
57 58 5.127491 TCTCTTTCAACCCAATACAAACGT 58.873 37.500 0.00 0.00 0.00 3.99
58 59 5.682943 TCTCTTTCAACCCAATACAAACG 57.317 39.130 0.00 0.00 0.00 3.60
63 64 9.678941 CTTAGTTTTTCTCTTTCAACCCAATAC 57.321 33.333 0.00 0.00 0.00 1.89
89 90 1.300481 GGGCATTTCTCGGCTCTTAC 58.700 55.000 0.00 0.00 0.00 2.34
98 99 6.316390 CCCTTATAATATGTCGGGCATTTCTC 59.684 42.308 0.00 0.00 38.94 2.87
118 119 4.467082 TGCGTAAAATAGAGTGACCCCTTA 59.533 41.667 0.00 0.00 0.00 2.69
119 120 3.262405 TGCGTAAAATAGAGTGACCCCTT 59.738 43.478 0.00 0.00 0.00 3.95
121 122 3.255969 TGCGTAAAATAGAGTGACCCC 57.744 47.619 0.00 0.00 0.00 4.95
122 123 5.839621 TCTATGCGTAAAATAGAGTGACCC 58.160 41.667 0.00 0.00 32.84 4.46
123 124 7.491696 AGTTTCTATGCGTAAAATAGAGTGACC 59.508 37.037 0.00 0.00 37.79 4.02
124 125 8.408743 AGTTTCTATGCGTAAAATAGAGTGAC 57.591 34.615 0.00 0.00 37.79 3.67
125 126 8.997621 AAGTTTCTATGCGTAAAATAGAGTGA 57.002 30.769 0.00 0.00 37.79 3.41
139 148 6.723131 AGACTACCGAAAAAGTTTCTATGC 57.277 37.500 0.00 0.00 0.00 3.14
164 173 3.803231 TGCGTAAAACAAAAGCGTCTCTA 59.197 39.130 0.00 0.00 0.00 2.43
165 174 2.610374 TGCGTAAAACAAAAGCGTCTCT 59.390 40.909 0.00 0.00 0.00 3.10
184 193 3.127425 ACAAGTGTCTCTAAACCCTGC 57.873 47.619 0.00 0.00 0.00 4.85
188 197 3.120782 CGCGTAACAAGTGTCTCTAAACC 59.879 47.826 0.00 0.00 0.00 3.27
191 200 3.302555 CACGCGTAACAAGTGTCTCTAA 58.697 45.455 13.44 0.00 0.00 2.10
199 208 1.508632 ATCTTGCACGCGTAACAAGT 58.491 45.000 34.45 25.24 41.22 3.16
280 289 1.299541 GTCTGGATGCAACGGGTATG 58.700 55.000 0.00 0.00 0.00 2.39
381 390 5.255687 TGTGTTTCATGGACAGCATATTCT 58.744 37.500 3.50 0.00 0.00 2.40
393 402 6.088016 TCTTGGAGATTTTGTGTTTCATGG 57.912 37.500 0.00 0.00 0.00 3.66
449 472 1.295792 TGCAAAACGAGATATCGGGC 58.704 50.000 15.07 12.00 37.45 6.13
471 494 0.736325 CACCGGTCTTCGTTGCCTAG 60.736 60.000 2.59 0.00 37.11 3.02
472 495 1.290955 CACCGGTCTTCGTTGCCTA 59.709 57.895 2.59 0.00 37.11 3.93
473 496 2.030562 CACCGGTCTTCGTTGCCT 59.969 61.111 2.59 0.00 37.11 4.75
546 569 2.325082 GCATCCGTGAAGCCAACGT 61.325 57.895 3.21 0.00 0.00 3.99
547 570 1.647545 ATGCATCCGTGAAGCCAACG 61.648 55.000 0.00 0.00 0.00 4.10
664 687 7.189693 TGTTTTTACGATGAGATGGATATGC 57.810 36.000 0.00 0.00 0.00 3.14
859 882 1.190323 CGAGCGATATTCTTTGGCGAC 59.810 52.381 0.00 0.00 0.00 5.19
875 898 0.025513 CAGAGCAATGTAACGCGAGC 59.974 55.000 15.93 2.28 0.00 5.03
879 902 0.025513 CGAGCAGAGCAATGTAACGC 59.974 55.000 0.00 0.00 0.00 4.84
959 983 2.464865 CTTCGAGTATGCTACTGTGCC 58.535 52.381 1.25 0.00 39.59 5.01
982 1006 2.434884 GGCTTGCTACTGCGCTGA 60.435 61.111 21.92 3.90 43.34 4.26
1041 1072 1.053835 TGGCGGAGAAGGGCATGATA 61.054 55.000 0.00 0.00 34.77 2.15
1141 1172 0.033405 TAGTAGAAGTCCCCTGCGCT 60.033 55.000 9.73 0.00 0.00 5.92
1146 1177 1.341778 CCGTGGTAGTAGAAGTCCCCT 60.342 57.143 0.00 0.00 0.00 4.79
1335 1366 2.258726 GGTGCCCTCGGTGACAAAC 61.259 63.158 0.00 0.00 0.00 2.93
1338 1369 2.927856 ATGGTGCCCTCGGTGACA 60.928 61.111 0.00 0.00 0.00 3.58
1404 1435 1.557099 TGATGTCGCCCTTGTAGAGT 58.443 50.000 0.00 0.00 0.00 3.24
1635 1666 7.510549 ACTTTGCTGAGAACTGCTTAATTAA 57.489 32.000 0.00 0.00 40.71 1.40
1641 1672 2.289002 CGAACTTTGCTGAGAACTGCTT 59.711 45.455 0.00 0.00 40.71 3.91
1764 1802 7.036829 TGTGCCATTGACAATTATCAAATGAG 58.963 34.615 2.77 0.00 41.78 2.90
1834 2171 9.926158 TTGATGTACACAATCTTTTTATTGCAT 57.074 25.926 0.00 0.00 39.93 3.96
1835 2172 9.926158 ATTGATGTACACAATCTTTTTATTGCA 57.074 25.926 14.20 0.00 39.93 4.08
1840 2177 9.430623 TCTCGATTGATGTACACAATCTTTTTA 57.569 29.630 28.54 17.00 46.29 1.52
1842 2179 7.905604 TCTCGATTGATGTACACAATCTTTT 57.094 32.000 28.54 11.93 46.29 2.27
1843 2180 9.254133 CTATCTCGATTGATGTACACAATCTTT 57.746 33.333 28.54 19.72 46.29 2.52
1846 2183 8.079203 ACTCTATCTCGATTGATGTACACAATC 58.921 37.037 25.42 25.42 45.54 2.67
1848 2185 7.334844 ACTCTATCTCGATTGATGTACACAA 57.665 36.000 0.00 5.52 0.00 3.33
1849 2186 6.017026 GGACTCTATCTCGATTGATGTACACA 60.017 42.308 0.00 0.00 0.00 3.72
1850 2187 6.375377 GGACTCTATCTCGATTGATGTACAC 58.625 44.000 0.00 0.00 0.00 2.90
1852 2189 5.408909 TCGGACTCTATCTCGATTGATGTAC 59.591 44.000 0.00 0.00 0.00 2.90
1855 2192 4.142708 CCTCGGACTCTATCTCGATTGATG 60.143 50.000 0.00 0.00 32.08 3.07
1857 2194 3.403968 CCTCGGACTCTATCTCGATTGA 58.596 50.000 0.00 0.00 32.08 2.57
1858 2195 2.486203 CCCTCGGACTCTATCTCGATTG 59.514 54.545 0.00 0.00 32.08 2.67
1859 2196 2.106857 ACCCTCGGACTCTATCTCGATT 59.893 50.000 0.00 0.00 32.08 3.34
1860 2197 1.700739 ACCCTCGGACTCTATCTCGAT 59.299 52.381 0.00 0.00 32.08 3.59
1862 2199 1.202663 TCACCCTCGGACTCTATCTCG 60.203 57.143 0.00 0.00 0.00 4.04
1863 2200 2.642154 TCACCCTCGGACTCTATCTC 57.358 55.000 0.00 0.00 0.00 2.75
1864 2201 2.242708 ACTTCACCCTCGGACTCTATCT 59.757 50.000 0.00 0.00 0.00 1.98
1865 2202 2.657143 ACTTCACCCTCGGACTCTATC 58.343 52.381 0.00 0.00 0.00 2.08
1867 2204 3.726557 TTACTTCACCCTCGGACTCTA 57.273 47.619 0.00 0.00 0.00 2.43
1869 2206 3.194968 TCAATTACTTCACCCTCGGACTC 59.805 47.826 0.00 0.00 0.00 3.36
1870 2207 3.170717 TCAATTACTTCACCCTCGGACT 58.829 45.455 0.00 0.00 0.00 3.85
1871 2208 3.604875 TCAATTACTTCACCCTCGGAC 57.395 47.619 0.00 0.00 0.00 4.79
1872 2209 3.581332 ACTTCAATTACTTCACCCTCGGA 59.419 43.478 0.00 0.00 0.00 4.55
1873 2210 3.939066 ACTTCAATTACTTCACCCTCGG 58.061 45.455 0.00 0.00 0.00 4.63
1874 2211 5.238583 AGAACTTCAATTACTTCACCCTCG 58.761 41.667 0.00 0.00 0.00 4.63
1876 2213 7.746703 AGTTAGAACTTCAATTACTTCACCCT 58.253 34.615 0.00 0.00 35.21 4.34
1878 2215 8.834749 AGAGTTAGAACTTCAATTACTTCACC 57.165 34.615 0.00 0.00 39.88 4.02
1908 2655 4.685169 ATTGTCGGAATGATGTTGTGTC 57.315 40.909 0.00 0.00 0.00 3.67
1926 2673 9.125026 AGCCTTATGTTGGATAACTTAGAATTG 57.875 33.333 0.00 0.00 37.68 2.32
1932 2679 8.934697 AGTATGAGCCTTATGTTGGATAACTTA 58.065 33.333 0.00 0.00 37.68 2.24
1953 5031 5.243207 GGATAAAATACCGGTGGGAGTATG 58.757 45.833 19.93 0.00 36.97 2.39
1965 5043 3.482436 TGCATGGGACGGATAAAATACC 58.518 45.455 0.00 0.00 0.00 2.73
1976 5054 1.404047 GGAAATTGGTTGCATGGGACG 60.404 52.381 0.00 0.00 0.00 4.79
1978 5056 2.021262 TGGAAATTGGTTGCATGGGA 57.979 45.000 0.00 0.00 31.74 4.37
2004 5082 8.983789 TGTTCCACCACATACTTGTATCTATAA 58.016 33.333 0.00 0.00 33.76 0.98
2007 5085 6.860790 TGTTCCACCACATACTTGTATCTA 57.139 37.500 0.00 0.00 33.76 1.98
2037 5115 2.046892 GCAGACGGTCCATGCTGT 60.047 61.111 13.35 0.00 37.00 4.40
2056 5134 0.521735 CCCCTTTTCGTGCTTGCTAC 59.478 55.000 0.00 0.00 0.00 3.58
2072 5150 3.026694 AGCACATATTTCTCTTTGCCCC 58.973 45.455 0.00 0.00 0.00 5.80
2150 5229 5.354234 GTCATGTTGACCAAGGGTAACATAG 59.646 44.000 17.19 13.35 41.37 2.23
2194 5273 9.586435 AAGTTCACCTAAAAATCAAGAGTTTTG 57.414 29.630 15.89 5.37 38.75 2.44
2199 5278 8.078596 CCTGAAAGTTCACCTAAAAATCAAGAG 58.921 37.037 0.00 0.00 32.90 2.85
2205 5284 6.127196 TGCAACCTGAAAGTTCACCTAAAAAT 60.127 34.615 0.00 0.00 32.90 1.82
2241 5320 9.678941 GTTTTCTTCCACTATTCCACTTAAAAG 57.321 33.333 0.00 0.00 0.00 2.27
2249 5328 5.576563 TGGAGTTTTCTTCCACTATTCCA 57.423 39.130 0.00 0.00 0.00 3.53
2307 5386 9.627395 CTTACTCAAGCCTATGTACATATACAC 57.373 37.037 15.81 6.31 44.11 2.90
2352 5431 9.271828 TCTGCTTTGTTCTTTCTTTTTCTTTTT 57.728 25.926 0.00 0.00 0.00 1.94
2357 5436 8.712363 AGTTTTCTGCTTTGTTCTTTCTTTTTC 58.288 29.630 0.00 0.00 0.00 2.29
2359 5438 9.705290 TTAGTTTTCTGCTTTGTTCTTTCTTTT 57.295 25.926 0.00 0.00 0.00 2.27
2377 5456 6.040247 CCAAAAGGTTGTCTGGTTAGTTTTC 58.960 40.000 0.00 0.00 32.40 2.29
2378 5457 5.105106 CCCAAAAGGTTGTCTGGTTAGTTTT 60.105 40.000 0.00 0.00 32.40 2.43
2394 5473 2.374184 TGTCACAACAGACCCAAAAGG 58.626 47.619 0.00 0.00 43.78 3.11
2405 5484 1.021202 CTTTTCGCCCTGTCACAACA 58.979 50.000 0.00 0.00 0.00 3.33
2406 5485 0.310854 CCTTTTCGCCCTGTCACAAC 59.689 55.000 0.00 0.00 0.00 3.32
2407 5486 0.181587 TCCTTTTCGCCCTGTCACAA 59.818 50.000 0.00 0.00 0.00 3.33
2408 5487 0.250295 CTCCTTTTCGCCCTGTCACA 60.250 55.000 0.00 0.00 0.00 3.58
2409 5488 0.955919 CCTCCTTTTCGCCCTGTCAC 60.956 60.000 0.00 0.00 0.00 3.67
2410 5489 1.374947 CCTCCTTTTCGCCCTGTCA 59.625 57.895 0.00 0.00 0.00 3.58
2411 5490 0.955919 CACCTCCTTTTCGCCCTGTC 60.956 60.000 0.00 0.00 0.00 3.51
2412 5491 1.073199 CACCTCCTTTTCGCCCTGT 59.927 57.895 0.00 0.00 0.00 4.00
2413 5492 0.955919 GTCACCTCCTTTTCGCCCTG 60.956 60.000 0.00 0.00 0.00 4.45
2414 5493 1.375326 GTCACCTCCTTTTCGCCCT 59.625 57.895 0.00 0.00 0.00 5.19
2415 5494 1.674651 GGTCACCTCCTTTTCGCCC 60.675 63.158 0.00 0.00 0.00 6.13
2416 5495 0.322546 ATGGTCACCTCCTTTTCGCC 60.323 55.000 0.00 0.00 0.00 5.54
2417 5496 0.804989 CATGGTCACCTCCTTTTCGC 59.195 55.000 0.00 0.00 0.00 4.70
2418 5497 2.185004 ACATGGTCACCTCCTTTTCG 57.815 50.000 0.00 0.00 0.00 3.46
2419 5498 2.820197 GGAACATGGTCACCTCCTTTTC 59.180 50.000 13.90 0.00 0.00 2.29
2420 5499 2.490902 GGGAACATGGTCACCTCCTTTT 60.491 50.000 13.90 0.00 0.00 2.27
2421 5500 1.075536 GGGAACATGGTCACCTCCTTT 59.924 52.381 13.90 0.00 0.00 3.11
2422 5501 0.698818 GGGAACATGGTCACCTCCTT 59.301 55.000 13.90 0.00 0.00 3.36
2423 5502 0.178861 AGGGAACATGGTCACCTCCT 60.179 55.000 10.07 4.79 0.00 3.69
2424 5503 0.698818 AAGGGAACATGGTCACCTCC 59.301 55.000 17.88 8.21 0.00 4.30
2425 5504 2.572104 ACTAAGGGAACATGGTCACCTC 59.428 50.000 17.88 3.50 0.00 3.85
2426 5505 2.572104 GACTAAGGGAACATGGTCACCT 59.428 50.000 10.07 12.06 0.00 4.00
2427 5506 2.572104 AGACTAAGGGAACATGGTCACC 59.428 50.000 10.07 9.77 0.00 4.02
2428 5507 3.600388 CAGACTAAGGGAACATGGTCAC 58.400 50.000 13.90 9.53 0.00 3.67
2429 5508 2.027192 GCAGACTAAGGGAACATGGTCA 60.027 50.000 13.90 0.00 0.00 4.02
2430 5509 2.633488 GCAGACTAAGGGAACATGGTC 58.367 52.381 0.73 0.73 0.00 4.02
2431 5510 1.282157 GGCAGACTAAGGGAACATGGT 59.718 52.381 0.00 0.00 0.00 3.55
2432 5511 1.743772 CGGCAGACTAAGGGAACATGG 60.744 57.143 0.00 0.00 0.00 3.66
2433 5512 1.656652 CGGCAGACTAAGGGAACATG 58.343 55.000 0.00 0.00 0.00 3.21
2434 5513 0.107654 GCGGCAGACTAAGGGAACAT 60.108 55.000 0.00 0.00 0.00 2.71
2435 5514 1.192146 AGCGGCAGACTAAGGGAACA 61.192 55.000 1.45 0.00 0.00 3.18
2436 5515 0.460459 GAGCGGCAGACTAAGGGAAC 60.460 60.000 1.45 0.00 0.00 3.62
2437 5516 1.614241 GGAGCGGCAGACTAAGGGAA 61.614 60.000 1.45 0.00 0.00 3.97
2438 5517 2.058595 GGAGCGGCAGACTAAGGGA 61.059 63.158 1.45 0.00 0.00 4.20
2439 5518 2.501610 GGAGCGGCAGACTAAGGG 59.498 66.667 1.45 0.00 0.00 3.95
2440 5519 2.105128 CGGAGCGGCAGACTAAGG 59.895 66.667 1.45 0.00 0.00 2.69
2441 5520 2.105128 CCGGAGCGGCAGACTAAG 59.895 66.667 0.00 0.00 41.17 2.18
2460 5539 2.683933 TTCCCTCGCTCTCCCACC 60.684 66.667 0.00 0.00 0.00 4.61
2461 5540 2.579738 GTTCCCTCGCTCTCCCAC 59.420 66.667 0.00 0.00 0.00 4.61
2462 5541 2.683933 GGTTCCCTCGCTCTCCCA 60.684 66.667 0.00 0.00 0.00 4.37
2463 5542 3.471806 GGGTTCCCTCGCTCTCCC 61.472 72.222 0.00 0.00 0.00 4.30
2464 5543 3.471806 GGGGTTCCCTCGCTCTCC 61.472 72.222 7.87 0.00 41.34 3.71
2465 5544 3.839432 CGGGGTTCCCTCGCTCTC 61.839 72.222 7.87 0.00 42.67 3.20
2468 5547 4.798682 ATCCGGGGTTCCCTCGCT 62.799 66.667 0.00 0.00 42.67 4.93
2469 5548 4.237207 GATCCGGGGTTCCCTCGC 62.237 72.222 0.00 0.00 42.67 5.03
2470 5549 1.152610 TAGATCCGGGGTTCCCTCG 60.153 63.158 0.00 9.32 42.67 4.63
2471 5550 0.832559 CCTAGATCCGGGGTTCCCTC 60.833 65.000 0.00 0.00 42.67 4.30
2472 5551 1.236282 CCTAGATCCGGGGTTCCCT 59.764 63.158 0.00 0.00 42.67 4.20
2473 5552 1.842010 CCCTAGATCCGGGGTTCCC 60.842 68.421 0.00 0.00 41.09 3.97
2474 5553 2.517798 GCCCTAGATCCGGGGTTCC 61.518 68.421 17.06 1.58 44.25 3.62
2475 5554 2.517798 GGCCCTAGATCCGGGGTTC 61.518 68.421 17.06 9.12 44.25 3.62
2476 5555 2.447959 GGCCCTAGATCCGGGGTT 60.448 66.667 17.06 0.00 44.25 4.11
2477 5556 4.576374 GGGCCCTAGATCCGGGGT 62.576 72.222 17.04 0.00 44.25 4.95
2482 5561 4.964241 AGCCGGGGCCCTAGATCC 62.964 72.222 24.38 1.81 43.17 3.36
2483 5562 2.849646 AAGCCGGGGCCCTAGATC 60.850 66.667 24.38 11.16 43.17 2.75
2484 5563 2.615191 TACAAGCCGGGGCCCTAGAT 62.615 60.000 24.38 9.46 43.17 1.98
2485 5564 3.320411 TACAAGCCGGGGCCCTAGA 62.320 63.158 24.38 0.00 43.17 2.43
2486 5565 2.766651 TACAAGCCGGGGCCCTAG 60.767 66.667 24.38 16.37 43.17 3.02
2487 5566 2.615191 ATCTACAAGCCGGGGCCCTA 62.615 60.000 24.38 2.66 43.17 3.53
2488 5567 2.615191 TATCTACAAGCCGGGGCCCT 62.615 60.000 24.38 1.25 43.17 5.19
2489 5568 2.113243 CTATCTACAAGCCGGGGCCC 62.113 65.000 15.76 15.76 43.17 5.80
2490 5569 1.371558 CTATCTACAAGCCGGGGCC 59.628 63.158 2.18 0.00 43.17 5.80
2491 5570 0.033642 GACTATCTACAAGCCGGGGC 59.966 60.000 2.18 0.18 42.33 5.80
2492 5571 0.314302 CGACTATCTACAAGCCGGGG 59.686 60.000 2.18 0.00 0.00 5.73
2493 5572 0.314302 CCGACTATCTACAAGCCGGG 59.686 60.000 2.18 0.00 32.64 5.73
2494 5573 0.314302 CCCGACTATCTACAAGCCGG 59.686 60.000 0.00 0.00 35.68 6.13
2495 5574 0.318784 GCCCGACTATCTACAAGCCG 60.319 60.000 0.00 0.00 0.00 5.52
2496 5575 1.041437 AGCCCGACTATCTACAAGCC 58.959 55.000 0.00 0.00 0.00 4.35
2497 5576 2.885894 ACTAGCCCGACTATCTACAAGC 59.114 50.000 0.00 0.00 0.00 4.01
2498 5577 3.253677 CCACTAGCCCGACTATCTACAAG 59.746 52.174 0.00 0.00 0.00 3.16
2499 5578 3.220110 CCACTAGCCCGACTATCTACAA 58.780 50.000 0.00 0.00 0.00 2.41
2500 5579 2.174210 ACCACTAGCCCGACTATCTACA 59.826 50.000 0.00 0.00 0.00 2.74
2501 5580 2.813172 GACCACTAGCCCGACTATCTAC 59.187 54.545 0.00 0.00 0.00 2.59
2502 5581 2.709934 AGACCACTAGCCCGACTATCTA 59.290 50.000 0.00 0.00 0.00 1.98
2503 5582 1.495574 AGACCACTAGCCCGACTATCT 59.504 52.381 0.00 0.00 0.00 1.98
2504 5583 1.984066 AGACCACTAGCCCGACTATC 58.016 55.000 0.00 0.00 0.00 2.08
2505 5584 2.032620 CAAGACCACTAGCCCGACTAT 58.967 52.381 0.00 0.00 0.00 2.12
2506 5585 1.471119 CAAGACCACTAGCCCGACTA 58.529 55.000 0.00 0.00 0.00 2.59
2507 5586 1.258445 CCAAGACCACTAGCCCGACT 61.258 60.000 0.00 0.00 0.00 4.18
2508 5587 1.218316 CCAAGACCACTAGCCCGAC 59.782 63.158 0.00 0.00 0.00 4.79
2509 5588 2.656069 GCCAAGACCACTAGCCCGA 61.656 63.158 0.00 0.00 0.00 5.14
2510 5589 2.125106 GCCAAGACCACTAGCCCG 60.125 66.667 0.00 0.00 0.00 6.13
2511 5590 2.125106 CGCCAAGACCACTAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
2512 5591 2.125106 CCGCCAAGACCACTAGCC 60.125 66.667 0.00 0.00 0.00 3.93
2513 5592 1.741770 CACCGCCAAGACCACTAGC 60.742 63.158 0.00 0.00 0.00 3.42
2514 5593 1.741770 GCACCGCCAAGACCACTAG 60.742 63.158 0.00 0.00 0.00 2.57
2515 5594 2.345991 GCACCGCCAAGACCACTA 59.654 61.111 0.00 0.00 0.00 2.74
2526 5605 2.568090 CCAACTCAATGGCACCGC 59.432 61.111 0.00 0.00 32.78 5.68
2527 5606 2.342650 CCCCAACTCAATGGCACCG 61.343 63.158 0.00 0.00 39.26 4.94
2528 5607 0.324645 ATCCCCAACTCAATGGCACC 60.325 55.000 0.00 0.00 39.26 5.01
2529 5608 1.205417 CAATCCCCAACTCAATGGCAC 59.795 52.381 0.00 0.00 39.26 5.01
2530 5609 1.203162 ACAATCCCCAACTCAATGGCA 60.203 47.619 0.00 0.00 39.26 4.92
2531 5610 1.560505 ACAATCCCCAACTCAATGGC 58.439 50.000 0.00 0.00 39.26 4.40
2532 5611 2.234414 CCAACAATCCCCAACTCAATGG 59.766 50.000 0.00 0.00 40.35 3.16
2533 5612 2.234414 CCCAACAATCCCCAACTCAATG 59.766 50.000 0.00 0.00 0.00 2.82
2534 5613 2.539302 CCCAACAATCCCCAACTCAAT 58.461 47.619 0.00 0.00 0.00 2.57
2535 5614 1.482177 CCCCAACAATCCCCAACTCAA 60.482 52.381 0.00 0.00 0.00 3.02
2536 5615 0.114168 CCCCAACAATCCCCAACTCA 59.886 55.000 0.00 0.00 0.00 3.41
2537 5616 0.407918 TCCCCAACAATCCCCAACTC 59.592 55.000 0.00 0.00 0.00 3.01
2538 5617 0.863956 TTCCCCAACAATCCCCAACT 59.136 50.000 0.00 0.00 0.00 3.16
2539 5618 0.973632 GTTCCCCAACAATCCCCAAC 59.026 55.000 0.00 0.00 32.14 3.77
2540 5619 0.540830 CGTTCCCCAACAATCCCCAA 60.541 55.000 0.00 0.00 32.14 4.12
2541 5620 1.075836 CGTTCCCCAACAATCCCCA 59.924 57.895 0.00 0.00 32.14 4.96
2542 5621 0.328926 TACGTTCCCCAACAATCCCC 59.671 55.000 0.00 0.00 32.14 4.81
2543 5622 1.003928 ACTACGTTCCCCAACAATCCC 59.996 52.381 0.00 0.00 32.14 3.85
2544 5623 2.484742 ACTACGTTCCCCAACAATCC 57.515 50.000 0.00 0.00 32.14 3.01
2545 5624 6.149807 TGAAATTACTACGTTCCCCAACAATC 59.850 38.462 0.00 0.00 32.14 2.67
2546 5625 6.005198 TGAAATTACTACGTTCCCCAACAAT 58.995 36.000 0.00 0.00 32.14 2.71
2547 5626 5.374921 TGAAATTACTACGTTCCCCAACAA 58.625 37.500 0.00 0.00 32.14 2.83
2548 5627 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
2549 5628 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
2550 5629 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
2551 5630 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
2552 5631 8.821147 AAATTTTTGAAATTACTACGTTCCCC 57.179 30.769 0.00 0.00 0.00 4.81
2553 5632 8.918658 GGAAATTTTTGAAATTACTACGTTCCC 58.081 33.333 0.00 0.00 0.00 3.97
2554 5633 9.687210 AGGAAATTTTTGAAATTACTACGTTCC 57.313 29.630 0.00 0.00 0.00 3.62
2557 5636 9.815936 CGTAGGAAATTTTTGAAATTACTACGT 57.184 29.630 28.22 0.00 41.82 3.57
2558 5637 8.782327 GCGTAGGAAATTTTTGAAATTACTACG 58.218 33.333 29.83 29.83 44.82 3.51
2559 5638 9.615295 TGCGTAGGAAATTTTTGAAATTACTAC 57.385 29.630 18.73 18.73 32.65 2.73
2560 5639 9.615295 GTGCGTAGGAAATTTTTGAAATTACTA 57.385 29.630 0.00 3.76 0.00 1.82
2561 5640 8.138712 TGTGCGTAGGAAATTTTTGAAATTACT 58.861 29.630 0.00 4.52 0.00 2.24
2562 5641 8.211838 GTGTGCGTAGGAAATTTTTGAAATTAC 58.788 33.333 0.00 0.00 0.00 1.89
2563 5642 7.113684 CGTGTGCGTAGGAAATTTTTGAAATTA 59.886 33.333 0.00 0.00 0.00 1.40
2564 5643 6.074569 CGTGTGCGTAGGAAATTTTTGAAATT 60.075 34.615 0.00 0.00 0.00 1.82
2565 5644 5.401079 CGTGTGCGTAGGAAATTTTTGAAAT 59.599 36.000 0.00 0.00 0.00 2.17
2566 5645 4.735822 CGTGTGCGTAGGAAATTTTTGAAA 59.264 37.500 0.00 0.00 0.00 2.69
2567 5646 4.283678 CGTGTGCGTAGGAAATTTTTGAA 58.716 39.130 0.00 0.00 0.00 2.69
2568 5647 3.850374 GCGTGTGCGTAGGAAATTTTTGA 60.850 43.478 0.00 0.00 40.81 2.69
2569 5648 2.403698 GCGTGTGCGTAGGAAATTTTTG 59.596 45.455 0.00 0.00 40.81 2.44
2570 5649 2.657184 GCGTGTGCGTAGGAAATTTTT 58.343 42.857 0.00 0.00 40.81 1.94
2571 5650 2.325509 GCGTGTGCGTAGGAAATTTT 57.674 45.000 0.00 0.00 40.81 1.82
2582 5661 5.130470 ATCATCATGATCTTGCGTGTGCG 62.130 47.826 4.86 0.00 36.70 5.34
2583 5662 1.667212 TCATCATGATCTTGCGTGTGC 59.333 47.619 4.86 0.00 43.20 4.57
2584 5663 3.848554 GCATCATCATGATCTTGCGTGTG 60.849 47.826 18.62 2.90 34.28 3.82
2585 5664 2.289820 GCATCATCATGATCTTGCGTGT 59.710 45.455 18.62 0.00 34.28 4.49
2586 5665 2.289547 TGCATCATCATGATCTTGCGTG 59.710 45.455 24.04 8.78 34.28 5.34
2587 5666 2.567985 TGCATCATCATGATCTTGCGT 58.432 42.857 24.04 0.00 34.28 5.24
2588 5667 3.831715 ATGCATCATCATGATCTTGCG 57.168 42.857 24.04 8.66 34.28 4.85
2589 5668 4.156008 TGCTATGCATCATCATGATCTTGC 59.844 41.667 23.44 23.44 34.28 4.01
2590 5669 5.880054 TGCTATGCATCATCATGATCTTG 57.120 39.130 4.86 7.58 34.28 3.02
2591 5670 5.106673 CGTTGCTATGCATCATCATGATCTT 60.107 40.000 4.86 0.00 38.76 2.40
2592 5671 4.392138 CGTTGCTATGCATCATCATGATCT 59.608 41.667 4.86 0.00 38.76 2.75
2593 5672 4.390909 TCGTTGCTATGCATCATCATGATC 59.609 41.667 4.86 0.00 38.76 2.92
2594 5673 4.320870 TCGTTGCTATGCATCATCATGAT 58.679 39.130 0.19 1.18 38.76 2.45
2595 5674 3.731089 TCGTTGCTATGCATCATCATGA 58.269 40.909 0.19 0.00 38.76 3.07
2596 5675 3.744426 TCTCGTTGCTATGCATCATCATG 59.256 43.478 0.19 0.00 38.76 3.07
2597 5676 3.995048 CTCTCGTTGCTATGCATCATCAT 59.005 43.478 0.19 0.00 38.76 2.45
2598 5677 3.387397 CTCTCGTTGCTATGCATCATCA 58.613 45.455 0.19 0.00 38.76 3.07
2599 5678 2.735663 CCTCTCGTTGCTATGCATCATC 59.264 50.000 0.19 0.00 38.76 2.92
2600 5679 2.549563 CCCTCTCGTTGCTATGCATCAT 60.550 50.000 0.19 0.00 38.76 2.45
2601 5680 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
2602 5681 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
2603 5682 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
2604 5683 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
2605 5684 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
2606 5685 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
2607 5686 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
2608 5687 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
2609 5688 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
2610 5689 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
2611 5690 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
2612 5691 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
2613 5692 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
2614 5693 1.316706 GGACACACTCTCCCCTCTCG 61.317 65.000 0.00 0.00 0.00 4.04
2615 5694 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
2616 5695 0.415429 ATGGACACACTCTCCCCTCT 59.585 55.000 0.00 0.00 0.00 3.69
2617 5696 0.539051 CATGGACACACTCTCCCCTC 59.461 60.000 0.00 0.00 0.00 4.30
2618 5697 0.911525 CCATGGACACACTCTCCCCT 60.912 60.000 5.56 0.00 0.00 4.79
2619 5698 0.909610 TCCATGGACACACTCTCCCC 60.910 60.000 11.44 0.00 0.00 4.81
2620 5699 2.683916 TCCATGGACACACTCTCCC 58.316 57.895 11.44 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.