Multiple sequence alignment - TraesCS7B01G083300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G083300 chr7B 100.000 2679 0 0 1 2679 94144145 94141467 0.000000e+00 4948.0
1 TraesCS7B01G083300 chr7B 99.234 1044 8 0 1039 2082 94185879 94184836 0.000000e+00 1884.0
2 TraesCS7B01G083300 chr7B 91.332 773 48 10 1039 1809 157808913 157809668 0.000000e+00 1038.0
3 TraesCS7B01G083300 chr7B 96.289 539 14 3 1039 1574 93571974 93572509 0.000000e+00 880.0
4 TraesCS7B01G083300 chr7B 93.347 481 20 3 1 469 94187538 94187058 0.000000e+00 701.0
5 TraesCS7B01G083300 chr7B 94.096 271 11 1 1962 2227 94115388 94115118 8.930000e-110 407.0
6 TraesCS7B01G083300 chr7B 84.409 372 28 17 461 803 94186876 94186506 3.300000e-89 339.0
7 TraesCS7B01G083300 chr7B 85.764 288 31 3 2401 2679 94115118 94114832 2.020000e-76 296.0
8 TraesCS7B01G083300 chr7B 88.288 222 22 2 819 1040 93571299 93571516 2.050000e-66 263.0
9 TraesCS7B01G083300 chr7B 95.172 145 7 0 1813 1957 93572787 93572931 2.070000e-56 230.0
10 TraesCS7B01G083300 chr7B 95.172 145 7 0 1813 1957 93651940 93652084 2.070000e-56 230.0
11 TraesCS7B01G083300 chr7B 77.556 401 59 19 1582 1980 157809507 157809878 2.090000e-51 213.0
12 TraesCS7B01G083300 chr7B 84.762 210 30 2 361 569 93570942 93571150 2.700000e-50 209.0
13 TraesCS7B01G083300 chr7B 81.778 225 13 11 821 1045 94186520 94186324 2.130000e-36 163.0
14 TraesCS7B01G083300 chr7B 88.000 100 7 3 1988 2084 93652080 93652177 2.180000e-21 113.0
15 TraesCS7B01G083300 chr7B 85.526 76 10 1 2096 2171 157809960 157810034 7.950000e-11 78.7
16 TraesCS7B01G083300 chr7D 87.635 1205 76 35 1039 2223 132157572 132158723 0.000000e+00 1332.0
17 TraesCS7B01G083300 chr7D 94.574 774 31 8 1039 1809 132764081 132763316 0.000000e+00 1186.0
18 TraesCS7B01G083300 chr7D 86.899 977 59 30 1039 1981 132136136 132137077 0.000000e+00 1031.0
19 TraesCS7B01G083300 chr7D 90.991 777 47 11 1039 1809 194129856 194130615 0.000000e+00 1026.0
20 TraesCS7B01G083300 chr7D 84.684 790 48 23 300 1040 132832446 132831681 0.000000e+00 721.0
21 TraesCS7B01G083300 chr7D 95.556 270 12 0 1 270 132832813 132832544 1.470000e-117 433.0
22 TraesCS7B01G083300 chr7D 77.726 642 83 35 445 1037 132765171 132764541 3.300000e-89 339.0
23 TraesCS7B01G083300 chr7D 78.685 502 53 28 1586 2084 132829804 132829354 4.370000e-73 285.0
24 TraesCS7B01G083300 chr7D 85.036 274 34 3 469 741 132747581 132747848 3.400000e-69 272.0
25 TraesCS7B01G083300 chr7D 78.287 502 49 31 1585 2084 132763475 132763032 4.400000e-68 268.0
26 TraesCS7B01G083300 chr7D 85.057 261 35 3 343 602 132739635 132739892 2.050000e-66 263.0
27 TraesCS7B01G083300 chr7D 84.091 220 27 4 825 1040 132197143 132197358 3.500000e-49 206.0
28 TraesCS7B01G083300 chr7D 82.661 248 22 6 793 1040 132831098 132830872 1.630000e-47 200.0
29 TraesCS7B01G083300 chr7D 86.441 177 23 1 869 1045 132135488 132135663 2.720000e-45 193.0
30 TraesCS7B01G083300 chr7A 94.423 771 39 4 1039 1807 210252713 210253481 0.000000e+00 1182.0
31 TraesCS7B01G083300 chr7A 92.031 778 58 4 1039 1813 131187069 131186293 0.000000e+00 1090.0
32 TraesCS7B01G083300 chr7A 91.462 773 38 11 1039 1809 203697352 203698098 0.000000e+00 1037.0
33 TraesCS7B01G083300 chr7A 91.346 728 34 8 1091 1809 131108915 131108208 0.000000e+00 968.0
34 TraesCS7B01G083300 chr7A 83.855 799 69 18 1 759 131127021 131126243 0.000000e+00 706.0
35 TraesCS7B01G083300 chr7A 86.901 313 27 7 1680 1981 130784691 130785000 3.300000e-89 339.0
36 TraesCS7B01G083300 chr7A 86.901 313 27 7 1680 1981 131119244 131118935 3.300000e-89 339.0
37 TraesCS7B01G083300 chr7A 87.279 283 32 4 329 608 130781551 130781832 1.200000e-83 320.0
38 TraesCS7B01G083300 chr7A 90.222 225 16 5 819 1039 130782229 130782451 3.370000e-74 289.0
39 TraesCS7B01G083300 chr7A 90.826 218 16 4 824 1039 131121699 131121484 3.370000e-74 289.0
40 TraesCS7B01G083300 chr7A 89.623 212 17 3 829 1040 131187739 131187533 5.690000e-67 265.0
41 TraesCS7B01G083300 chr7A 78.066 424 63 18 1582 2003 203697937 203698332 9.580000e-60 241.0
42 TraesCS7B01G083300 chr7A 90.566 159 14 1 868 1026 131126209 131126052 2.700000e-50 209.0
43 TraesCS7B01G083300 chr7A 76.248 501 49 31 1585 2084 131108367 131107936 4.520000e-48 202.0
44 TraesCS7B01G083300 chr7A 78.930 299 46 10 472 759 131122007 131121715 1.270000e-43 187.0
45 TraesCS7B01G083300 chr7A 76.522 345 43 24 1582 1921 130893972 130894283 1.280000e-33 154.0
46 TraesCS7B01G083300 chr7A 80.628 191 18 8 2042 2217 203698311 203698497 2.160000e-26 130.0
47 TraesCS7B01G083300 chr7A 75.105 237 42 10 534 759 130781990 130782220 7.900000e-16 95.3
48 TraesCS7B01G083300 chr5A 87.013 154 17 3 38 191 654383806 654383656 1.280000e-38 171.0
49 TraesCS7B01G083300 chr5D 86.022 93 12 1 2588 2679 181630985 181630893 6.100000e-17 99.0
50 TraesCS7B01G083300 chr5D 93.617 47 3 0 2633 2679 181631008 181630962 1.330000e-08 71.3
51 TraesCS7B01G083300 chr6D 85.263 95 9 3 2588 2679 285502142 285502234 2.840000e-15 93.5
52 TraesCS7B01G083300 chr5B 97.674 43 1 0 2637 2679 163282782 163282740 1.030000e-09 75.0
53 TraesCS7B01G083300 chr5B 95.349 43 2 0 2637 2679 163283071 163283029 4.790000e-08 69.4
54 TraesCS7B01G083300 chr5B 97.059 34 1 0 2588 2621 163283052 163283019 1.040000e-04 58.4
55 TraesCS7B01G083300 chr4D 100.000 35 0 0 2223 2257 445743281 445743247 6.190000e-07 65.8
56 TraesCS7B01G083300 chr2D 94.737 38 2 0 2588 2625 54881183 54881220 2.880000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G083300 chr7B 94141467 94144145 2678 True 4948.000000 4948 100.000000 1 2679 1 chr7B.!!$R1 2678
1 TraesCS7B01G083300 chr7B 94184836 94187538 2702 True 771.750000 1884 89.692000 1 2082 4 chr7B.!!$R3 2081
2 TraesCS7B01G083300 chr7B 157808913 157810034 1121 False 443.233333 1038 84.804667 1039 2171 3 chr7B.!!$F3 1132
3 TraesCS7B01G083300 chr7B 93570942 93572931 1989 False 395.500000 880 91.127750 361 1957 4 chr7B.!!$F1 1596
4 TraesCS7B01G083300 chr7B 94114832 94115388 556 True 351.500000 407 89.930000 1962 2679 2 chr7B.!!$R2 717
5 TraesCS7B01G083300 chr7D 132157572 132158723 1151 False 1332.000000 1332 87.635000 1039 2223 1 chr7D.!!$F1 1184
6 TraesCS7B01G083300 chr7D 194129856 194130615 759 False 1026.000000 1026 90.991000 1039 1809 1 chr7D.!!$F5 770
7 TraesCS7B01G083300 chr7D 132135488 132137077 1589 False 612.000000 1031 86.670000 869 1981 2 chr7D.!!$F6 1112
8 TraesCS7B01G083300 chr7D 132763032 132765171 2139 True 597.666667 1186 83.529000 445 2084 3 chr7D.!!$R1 1639
9 TraesCS7B01G083300 chr7D 132829354 132832813 3459 True 409.750000 721 85.396500 1 2084 4 chr7D.!!$R2 2083
10 TraesCS7B01G083300 chr7A 210252713 210253481 768 False 1182.000000 1182 94.423000 1039 1807 1 chr7A.!!$F2 768
11 TraesCS7B01G083300 chr7A 131186293 131187739 1446 True 677.500000 1090 90.827000 829 1813 2 chr7A.!!$R4 984
12 TraesCS7B01G083300 chr7A 131107936 131108915 979 True 585.000000 968 83.797000 1091 2084 2 chr7A.!!$R1 993
13 TraesCS7B01G083300 chr7A 203697352 203698497 1145 False 469.333333 1037 83.385333 1039 2217 3 chr7A.!!$F4 1178
14 TraesCS7B01G083300 chr7A 131126052 131127021 969 True 457.500000 706 87.210500 1 1026 2 chr7A.!!$R3 1025
15 TraesCS7B01G083300 chr7A 131118935 131122007 3072 True 271.666667 339 85.552333 472 1981 3 chr7A.!!$R2 1509
16 TraesCS7B01G083300 chr7A 130781551 130785000 3449 False 260.825000 339 84.876750 329 1981 4 chr7A.!!$F3 1652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 871 0.38288 GCCACGCGTTTGCAAATTTG 60.383 50.0 21.88 14.03 42.97 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 5039 0.108585 ACTTCCACGTGTGAGGCATT 59.891 50.0 15.65 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.366052 TTAGCAGGGAAAATCCAGTCC 57.634 47.619 0.00 0.00 38.64 3.85
86 87 6.346096 GTGCTTATGTCCAAACATAGGTCTA 58.654 40.000 8.77 0.00 46.36 2.59
242 243 2.612285 AGTCACATCTCTCTGGTCCA 57.388 50.000 0.00 0.00 0.00 4.02
270 271 4.787871 GAGCTGTGTGGTTGCTCT 57.212 55.556 0.00 0.00 46.69 4.09
278 290 4.215399 GCTGTGTGGTTGCTCTATTTTACA 59.785 41.667 0.00 0.00 0.00 2.41
402 475 7.447374 TGTTGGAACATGGTTATAAACTCTG 57.553 36.000 1.50 2.45 39.30 3.35
453 528 9.240159 GTTTTGCCGGAAATCGTATTAAATAAT 57.760 29.630 5.05 0.00 37.11 1.28
543 808 8.572828 TCACAATGTGTACATTTGTCATTTTC 57.427 30.769 18.81 0.00 43.48 2.29
555 824 3.146066 TGTCATTTTCCCGTTCTCAAGG 58.854 45.455 0.00 0.00 0.00 3.61
584 853 6.372659 TGGTGTTGATTCAGAATTCTTCTAGC 59.627 38.462 4.86 0.00 38.11 3.42
602 871 0.382880 GCCACGCGTTTGCAAATTTG 60.383 50.000 21.88 14.03 42.97 2.32
603 872 1.203928 CCACGCGTTTGCAAATTTGA 58.796 45.000 22.31 4.41 42.97 2.69
604 873 1.791785 CCACGCGTTTGCAAATTTGAT 59.208 42.857 22.31 0.00 42.97 2.57
605 874 2.983136 CCACGCGTTTGCAAATTTGATA 59.017 40.909 22.31 6.91 42.97 2.15
729 1265 2.177734 TGATTGCTTTATTGCCCAGCA 58.822 42.857 0.00 0.00 41.85 4.41
860 1427 5.514279 GCACCACAGCAGATCAATAATTAC 58.486 41.667 0.00 0.00 0.00 1.89
861 1428 5.506317 GCACCACAGCAGATCAATAATTACC 60.506 44.000 0.00 0.00 0.00 2.85
862 1429 5.824624 CACCACAGCAGATCAATAATTACCT 59.175 40.000 0.00 0.00 0.00 3.08
882 1449 1.228063 CTTCATCCATGGCCTCCGG 60.228 63.158 6.96 0.00 0.00 5.14
902 1469 0.735978 TCGTGGTACATCAAGCAGCG 60.736 55.000 0.00 0.00 44.52 5.18
986 1553 4.042435 CCCAGAACCTTCTAAACCCAGTTA 59.958 45.833 0.00 0.00 35.34 2.24
987 1554 5.246307 CCAGAACCTTCTAAACCCAGTTAG 58.754 45.833 0.00 0.00 35.34 2.34
989 1556 5.012768 CAGAACCTTCTAAACCCAGTTAGGA 59.987 44.000 0.00 0.00 35.92 2.94
991 1558 6.274908 AGAACCTTCTAAACCCAGTTAGGAAT 59.725 38.462 0.00 0.00 35.92 3.01
1970 4282 6.403866 ACAGGTTGTGATGATTTTTGCTTA 57.596 33.333 0.00 0.00 0.00 3.09
2199 4838 8.407064 TCGTTACCTGAATGTTTTGTGTTTATT 58.593 29.630 0.00 0.00 0.00 1.40
2246 4885 2.139323 TTCGAGAGTAAGCCTAGGCA 57.861 50.000 34.70 13.55 44.88 4.75
2247 4886 2.366640 TCGAGAGTAAGCCTAGGCAT 57.633 50.000 34.70 26.20 44.88 4.40
2248 4887 3.503800 TCGAGAGTAAGCCTAGGCATA 57.496 47.619 34.70 25.02 44.88 3.14
2249 4888 3.147629 TCGAGAGTAAGCCTAGGCATAC 58.852 50.000 32.43 32.43 43.17 2.39
2250 4889 2.229302 CGAGAGTAAGCCTAGGCATACC 59.771 54.545 34.48 27.13 43.67 2.73
2251 4890 3.231818 GAGAGTAAGCCTAGGCATACCA 58.768 50.000 34.48 15.09 43.67 3.25
2252 4891 3.835395 GAGAGTAAGCCTAGGCATACCAT 59.165 47.826 34.48 26.47 43.67 3.55
2253 4892 5.011982 AGAGTAAGCCTAGGCATACCATA 57.988 43.478 34.48 16.86 43.67 2.74
2254 4893 5.020132 AGAGTAAGCCTAGGCATACCATAG 58.980 45.833 34.48 0.00 43.67 2.23
2255 4894 3.515901 AGTAAGCCTAGGCATACCATAGC 59.484 47.826 34.48 16.79 43.67 2.97
2256 4895 2.334006 AGCCTAGGCATACCATAGCT 57.666 50.000 34.70 7.82 44.88 3.32
2257 4896 1.905215 AGCCTAGGCATACCATAGCTG 59.095 52.381 34.70 0.00 44.88 4.24
2258 4897 1.065854 GCCTAGGCATACCATAGCTGG 60.066 57.143 29.33 0.00 43.92 4.85
2260 4899 3.110705 CCTAGGCATACCATAGCTGGAT 58.889 50.000 0.00 0.00 46.37 3.41
2261 4900 3.521126 CCTAGGCATACCATAGCTGGATT 59.479 47.826 0.00 0.00 46.37 3.01
2262 4901 4.018960 CCTAGGCATACCATAGCTGGATTT 60.019 45.833 0.00 0.00 46.37 2.17
2263 4902 3.759581 AGGCATACCATAGCTGGATTTG 58.240 45.455 0.00 0.00 46.37 2.32
2264 4903 3.395607 AGGCATACCATAGCTGGATTTGA 59.604 43.478 0.00 0.00 46.37 2.69
2268 4907 6.604795 GGCATACCATAGCTGGATTTGATATT 59.395 38.462 0.00 0.00 46.37 1.28
2269 4908 7.775093 GGCATACCATAGCTGGATTTGATATTA 59.225 37.037 0.00 0.00 46.37 0.98
2270 4909 9.347240 GCATACCATAGCTGGATTTGATATTAT 57.653 33.333 0.00 0.00 46.37 1.28
2273 4912 8.798859 ACCATAGCTGGATTTGATATTATCAC 57.201 34.615 5.86 0.00 46.37 3.06
2274 4913 7.831193 ACCATAGCTGGATTTGATATTATCACC 59.169 37.037 5.86 5.54 46.37 4.02
2275 4914 8.051535 CCATAGCTGGATTTGATATTATCACCT 58.948 37.037 5.86 0.00 46.37 4.00
2276 4915 8.890718 CATAGCTGGATTTGATATTATCACCTG 58.109 37.037 5.86 9.28 39.39 4.00
2277 4916 6.845908 AGCTGGATTTGATATTATCACCTGT 58.154 36.000 5.86 0.00 39.39 4.00
2279 4918 7.880195 AGCTGGATTTGATATTATCACCTGTAC 59.120 37.037 5.86 0.00 39.39 2.90
2280 4919 7.880195 GCTGGATTTGATATTATCACCTGTACT 59.120 37.037 5.86 0.00 39.39 2.73
2281 4920 9.429359 CTGGATTTGATATTATCACCTGTACTC 57.571 37.037 5.86 0.00 39.39 2.59
2284 4923 9.429359 GATTTGATATTATCACCTGTACTCCAG 57.571 37.037 5.86 0.00 39.39 3.86
2294 4933 2.530701 CTGTACTCCAGGAGAAGGTGT 58.469 52.381 24.45 2.49 37.54 4.16
2295 4934 2.900546 CTGTACTCCAGGAGAAGGTGTT 59.099 50.000 24.45 0.72 37.54 3.32
2297 4936 1.353091 ACTCCAGGAGAAGGTGTTCC 58.647 55.000 24.45 0.00 32.48 3.62
2298 4937 0.247736 CTCCAGGAGAAGGTGTTCCG 59.752 60.000 11.62 0.00 38.54 4.30
2299 4938 1.376037 CCAGGAGAAGGTGTTCCGC 60.376 63.158 0.00 0.00 38.54 5.54
2301 4940 0.951040 CAGGAGAAGGTGTTCCGCAC 60.951 60.000 0.00 0.00 46.97 5.34
2302 4941 1.122019 AGGAGAAGGTGTTCCGCACT 61.122 55.000 0.00 0.00 46.86 4.40
2303 4942 0.670854 GGAGAAGGTGTTCCGCACTC 60.671 60.000 0.00 0.00 46.86 3.51
2304 4943 0.318762 GAGAAGGTGTTCCGCACTCT 59.681 55.000 0.00 0.00 46.86 3.24
2305 4944 0.034059 AGAAGGTGTTCCGCACTCTG 59.966 55.000 0.00 0.00 46.86 3.35
2306 4945 0.951040 GAAGGTGTTCCGCACTCTGG 60.951 60.000 0.00 0.00 46.86 3.86
2308 4947 2.741092 GTGTTCCGCACTCTGGGA 59.259 61.111 0.00 0.00 44.41 4.37
2309 4948 1.374758 GTGTTCCGCACTCTGGGAG 60.375 63.158 0.00 0.00 44.41 4.30
2310 4949 2.266055 GTTCCGCACTCTGGGAGG 59.734 66.667 0.00 0.00 33.35 4.30
2313 4952 2.759973 CCGCACTCTGGGAGGCTA 60.760 66.667 0.00 0.00 33.35 3.93
2314 4953 2.359169 CCGCACTCTGGGAGGCTAA 61.359 63.158 0.00 0.00 33.35 3.09
2315 4954 1.596934 CGCACTCTGGGAGGCTAAA 59.403 57.895 0.00 0.00 33.35 1.85
2316 4955 0.460987 CGCACTCTGGGAGGCTAAAG 60.461 60.000 0.00 0.00 33.35 1.85
2329 4968 0.109735 GCTAAAGCCAACTCCAACGC 60.110 55.000 0.00 0.00 34.31 4.84
2331 4970 0.948678 TAAAGCCAACTCCAACGCAC 59.051 50.000 0.00 0.00 0.00 5.34
2333 4972 1.447317 AAGCCAACTCCAACGCACTG 61.447 55.000 0.00 0.00 0.00 3.66
2334 4973 1.891919 GCCAACTCCAACGCACTGA 60.892 57.895 0.00 0.00 0.00 3.41
2335 4974 1.845809 GCCAACTCCAACGCACTGAG 61.846 60.000 0.00 0.00 0.00 3.35
2336 4975 1.571460 CAACTCCAACGCACTGAGC 59.429 57.895 0.00 0.00 40.87 4.26
2347 4992 1.787012 GCACTGAGCCAAATGGTTTG 58.213 50.000 0.71 0.00 40.32 2.93
2348 4993 1.069049 GCACTGAGCCAAATGGTTTGT 59.931 47.619 0.71 0.00 38.98 2.83
2349 4994 2.483538 GCACTGAGCCAAATGGTTTGTT 60.484 45.455 0.71 0.00 38.98 2.83
2350 4995 3.243704 GCACTGAGCCAAATGGTTTGTTA 60.244 43.478 0.71 0.00 38.98 2.41
2351 4996 4.549458 CACTGAGCCAAATGGTTTGTTAG 58.451 43.478 0.71 0.00 38.98 2.34
2352 4997 3.005791 ACTGAGCCAAATGGTTTGTTAGC 59.994 43.478 0.71 0.00 38.98 3.09
2353 4998 2.030363 TGAGCCAAATGGTTTGTTAGCG 60.030 45.455 0.71 0.00 38.98 4.26
2354 4999 1.960689 AGCCAAATGGTTTGTTAGCGT 59.039 42.857 0.71 0.00 38.98 5.07
2355 5000 2.030274 AGCCAAATGGTTTGTTAGCGTC 60.030 45.455 0.71 0.00 38.98 5.19
2356 5001 2.030274 GCCAAATGGTTTGTTAGCGTCT 60.030 45.455 0.71 0.00 38.98 4.18
2357 5002 3.552068 GCCAAATGGTTTGTTAGCGTCTT 60.552 43.478 0.71 0.00 38.98 3.01
2358 5003 4.320641 GCCAAATGGTTTGTTAGCGTCTTA 60.321 41.667 0.71 0.00 38.98 2.10
2359 5004 5.764131 CCAAATGGTTTGTTAGCGTCTTAA 58.236 37.500 2.22 0.00 38.98 1.85
2360 5005 6.210078 CCAAATGGTTTGTTAGCGTCTTAAA 58.790 36.000 2.22 0.00 38.98 1.52
2361 5006 6.143278 CCAAATGGTTTGTTAGCGTCTTAAAC 59.857 38.462 2.22 0.00 38.98 2.01
2362 5007 6.129561 CAAATGGTTTGTTAGCGTCTTAAACG 60.130 38.462 6.01 6.01 43.64 3.60
2363 5008 8.919546 CAAATGGTTTGTTAGCGTCTTAAACGG 61.920 40.741 10.65 0.00 42.37 4.44
2375 5020 5.091910 GTCTTAAACGGACACAAAAGAGG 57.908 43.478 0.00 0.00 34.23 3.69
2376 5021 4.024302 GTCTTAAACGGACACAAAAGAGGG 60.024 45.833 0.00 0.00 34.23 4.30
2377 5022 1.029681 AAACGGACACAAAAGAGGGC 58.970 50.000 0.00 0.00 0.00 5.19
2378 5023 0.822121 AACGGACACAAAAGAGGGCC 60.822 55.000 0.00 0.00 0.00 5.80
2379 5024 1.971695 CGGACACAAAAGAGGGCCC 60.972 63.158 16.46 16.46 0.00 5.80
2380 5025 1.606601 GGACACAAAAGAGGGCCCC 60.607 63.158 21.43 10.60 0.00 5.80
2381 5026 1.152830 GACACAAAAGAGGGCCCCA 59.847 57.895 21.43 0.00 0.00 4.96
2382 5027 1.152546 ACACAAAAGAGGGCCCCAC 60.153 57.895 21.43 13.90 0.00 4.61
2383 5028 2.115266 ACAAAAGAGGGCCCCACG 59.885 61.111 21.43 3.66 0.00 4.94
2384 5029 2.115266 CAAAAGAGGGCCCCACGT 59.885 61.111 21.43 8.87 0.00 4.49
2385 5030 2.115266 AAAAGAGGGCCCCACGTG 59.885 61.111 21.43 9.08 0.00 4.49
2386 5031 4.660938 AAAGAGGGCCCCACGTGC 62.661 66.667 21.43 0.00 0.00 5.34
2392 5037 4.382320 GGCCCCACGTGCGAAGTA 62.382 66.667 10.91 0.00 0.00 2.24
2393 5038 2.357760 GCCCCACGTGCGAAGTAA 60.358 61.111 10.91 0.00 0.00 2.24
2394 5039 1.962306 GCCCCACGTGCGAAGTAAA 60.962 57.895 10.91 0.00 0.00 2.01
2395 5040 1.508808 GCCCCACGTGCGAAGTAAAA 61.509 55.000 10.91 0.00 0.00 1.52
2396 5041 1.161843 CCCCACGTGCGAAGTAAAAT 58.838 50.000 10.91 0.00 0.00 1.82
2397 5042 1.135803 CCCCACGTGCGAAGTAAAATG 60.136 52.381 10.91 0.00 0.00 2.32
2398 5043 1.602191 CCACGTGCGAAGTAAAATGC 58.398 50.000 10.91 0.00 0.00 3.56
2399 5044 1.602191 CACGTGCGAAGTAAAATGCC 58.398 50.000 0.82 0.00 0.00 4.40
2404 5049 2.225491 GTGCGAAGTAAAATGCCTCACA 59.775 45.455 0.00 0.00 0.00 3.58
2410 5055 2.147958 GTAAAATGCCTCACACGTGGA 58.852 47.619 21.57 13.06 0.00 4.02
2417 5062 1.529865 GCCTCACACGTGGAAGTAAAC 59.470 52.381 21.57 2.54 0.00 2.01
2434 5079 3.881783 ACGGACAAACGTTCGTTTG 57.118 47.368 33.77 33.77 46.54 2.93
2435 5080 0.247775 ACGGACAAACGTTCGTTTGC 60.248 50.000 34.68 28.36 46.54 3.68
2436 5081 3.504127 ACGGACAAACGTTCGTTTGCC 62.504 52.381 34.68 32.13 46.54 4.52
2442 5087 2.968156 CGTTCGTTTGCCGTCCCA 60.968 61.111 0.00 0.00 37.94 4.37
2443 5088 2.322081 CGTTCGTTTGCCGTCCCAT 61.322 57.895 0.00 0.00 37.94 4.00
2448 5093 0.727793 CGTTTGCCGTCCCATTTTCG 60.728 55.000 0.00 0.00 0.00 3.46
2473 5126 1.765230 TTACCGGCCAAACTGTTTGT 58.235 45.000 26.35 13.60 38.98 2.83
2474 5127 2.634815 TACCGGCCAAACTGTTTGTA 57.365 45.000 26.35 12.73 38.98 2.41
2482 5135 4.498345 GGCCAAACTGTTTGTATCGAAACA 60.498 41.667 26.35 0.00 42.26 2.83
2491 5144 1.532007 TGTATCGAAACAAACACCCGC 59.468 47.619 0.00 0.00 0.00 6.13
2520 5173 0.678048 GGATGTGTGCCCTTGTCCTC 60.678 60.000 0.00 0.00 0.00 3.71
2521 5174 0.678048 GATGTGTGCCCTTGTCCTCC 60.678 60.000 0.00 0.00 0.00 4.30
2524 5177 2.936032 GTGCCCTTGTCCTCCCCT 60.936 66.667 0.00 0.00 0.00 4.79
2525 5178 2.610859 TGCCCTTGTCCTCCCCTC 60.611 66.667 0.00 0.00 0.00 4.30
2527 5180 3.787001 CCCTTGTCCTCCCCTCGC 61.787 72.222 0.00 0.00 0.00 5.03
2567 5221 4.479156 AACACCCCTTTTTCTATTCCCA 57.521 40.909 0.00 0.00 0.00 4.37
2569 5223 5.023514 ACACCCCTTTTTCTATTCCCATT 57.976 39.130 0.00 0.00 0.00 3.16
2574 5228 5.280499 CCCTTTTTCTATTCCCATTCCCTT 58.720 41.667 0.00 0.00 0.00 3.95
2575 5229 5.363868 CCCTTTTTCTATTCCCATTCCCTTC 59.636 44.000 0.00 0.00 0.00 3.46
2603 5257 4.536687 GCGCCGCCATTTTCTCGG 62.537 66.667 0.00 0.00 45.46 4.63
2630 5284 1.370587 GCTGTCTAGCTCGGTCGACT 61.371 60.000 16.46 0.00 46.57 4.18
2632 5286 1.062880 CTGTCTAGCTCGGTCGACTTC 59.937 57.143 16.46 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.058708 AGCACGTGATTGTCAATCTTGTG 60.059 43.478 28.10 28.10 41.91 3.33
214 215 0.671251 GAGATGTGACTAGGCCTCCG 59.329 60.000 9.68 4.04 0.00 4.63
242 243 4.215109 ACCACACAGCTCTTTGGTTAATT 58.785 39.130 4.14 0.00 39.41 1.40
432 507 7.184779 GGCTATTATTTAATACGATTTCCGGC 58.815 38.462 0.00 0.00 43.93 6.13
470 735 5.067805 TGCTCTGACGTCAAGATATACATGT 59.932 40.000 20.49 2.69 0.00 3.21
478 743 3.325293 AACATGCTCTGACGTCAAGAT 57.675 42.857 20.49 6.11 0.00 2.40
503 768 2.350899 TGTGAAAATGCAGGCAATCG 57.649 45.000 0.00 0.00 0.00 3.34
543 808 1.812571 CACCATTTCCTTGAGAACGGG 59.187 52.381 0.00 0.00 33.31 5.28
555 824 8.458212 GAAGAATTCTGAATCAACACCATTTC 57.542 34.615 9.17 0.00 43.23 2.17
584 853 1.203928 TCAAATTTGCAAACGCGTGG 58.796 45.000 14.98 10.06 0.00 4.94
602 871 2.936202 TGAGCCAAATCCAAGCCTATC 58.064 47.619 0.00 0.00 0.00 2.08
603 872 3.386932 TTGAGCCAAATCCAAGCCTAT 57.613 42.857 0.00 0.00 0.00 2.57
604 873 2.897271 TTGAGCCAAATCCAAGCCTA 57.103 45.000 0.00 0.00 0.00 3.93
605 874 1.897802 CTTTGAGCCAAATCCAAGCCT 59.102 47.619 1.56 0.00 32.70 4.58
648 1160 7.119116 TGTTACTCAATCAGCGTTTACAATCAT 59.881 33.333 0.00 0.00 0.00 2.45
702 1238 3.261580 GCAATAAAGCAATCAACACCCC 58.738 45.455 0.00 0.00 0.00 4.95
703 1239 3.261580 GGCAATAAAGCAATCAACACCC 58.738 45.455 0.00 0.00 35.83 4.61
729 1265 2.104792 TGCTTTCTCTAGTGTGCTTGGT 59.895 45.455 0.00 0.00 0.00 3.67
860 1427 1.478288 GGAGGCCATGGATGAAGAAGG 60.478 57.143 18.40 0.00 0.00 3.46
861 1428 1.813092 CGGAGGCCATGGATGAAGAAG 60.813 57.143 18.40 0.00 0.00 2.85
862 1429 0.181114 CGGAGGCCATGGATGAAGAA 59.819 55.000 18.40 0.00 0.00 2.52
882 1449 0.721718 GCTGCTTGATGTACCACGAC 59.278 55.000 0.00 0.00 0.00 4.34
902 1469 1.666189 GACCACAGCTTTAGGATTCGC 59.334 52.381 3.01 0.00 0.00 4.70
986 1553 2.883316 CTTGGGGGAGGGGGATTCCT 62.883 65.000 2.01 0.00 40.43 3.36
987 1554 2.287661 TTGGGGGAGGGGGATTCC 60.288 66.667 0.00 0.00 0.00 3.01
989 1556 0.481607 TTTCTTGGGGGAGGGGGATT 60.482 55.000 0.00 0.00 0.00 3.01
991 1558 1.543896 CTTTCTTGGGGGAGGGGGA 60.544 63.158 0.00 0.00 0.00 4.81
2226 4865 2.453521 TGCCTAGGCTTACTCTCGAAA 58.546 47.619 33.07 6.61 42.51 3.46
2228 4867 2.366640 ATGCCTAGGCTTACTCTCGA 57.633 50.000 33.07 11.23 42.51 4.04
2229 4868 2.229302 GGTATGCCTAGGCTTACTCTCG 59.771 54.545 38.39 5.55 45.31 4.04
2230 4869 3.231818 TGGTATGCCTAGGCTTACTCTC 58.768 50.000 38.39 28.85 45.31 3.20
2234 4873 3.515901 AGCTATGGTATGCCTAGGCTTAC 59.484 47.826 35.50 35.50 45.28 2.34
2235 4874 3.515502 CAGCTATGGTATGCCTAGGCTTA 59.484 47.826 33.07 27.35 42.51 3.09
2236 4875 2.304180 CAGCTATGGTATGCCTAGGCTT 59.696 50.000 33.07 28.43 42.51 4.35
2237 4876 1.905215 CAGCTATGGTATGCCTAGGCT 59.095 52.381 33.07 20.80 42.51 4.58
2238 4877 1.065854 CCAGCTATGGTATGCCTAGGC 60.066 57.143 27.71 27.71 42.17 3.93
2247 4886 9.890629 GTGATAATATCAAATCCAGCTATGGTA 57.109 33.333 4.30 0.00 43.51 3.25
2248 4887 7.831193 GGTGATAATATCAAATCCAGCTATGGT 59.169 37.037 4.30 0.00 43.51 3.55
2249 4888 8.051535 AGGTGATAATATCAAATCCAGCTATGG 58.948 37.037 4.30 0.00 44.03 2.74
2250 4889 8.890718 CAGGTGATAATATCAAATCCAGCTATG 58.109 37.037 4.30 0.00 41.69 2.23
2251 4890 8.609483 ACAGGTGATAATATCAAATCCAGCTAT 58.391 33.333 4.30 0.00 41.69 2.97
2252 4891 7.977818 ACAGGTGATAATATCAAATCCAGCTA 58.022 34.615 4.30 0.00 41.69 3.32
2253 4892 6.845908 ACAGGTGATAATATCAAATCCAGCT 58.154 36.000 4.30 0.00 41.69 4.24
2254 4893 7.880195 AGTACAGGTGATAATATCAAATCCAGC 59.120 37.037 4.30 0.00 41.69 4.85
2255 4894 9.429359 GAGTACAGGTGATAATATCAAATCCAG 57.571 37.037 4.30 2.41 41.69 3.86
2256 4895 8.375506 GGAGTACAGGTGATAATATCAAATCCA 58.624 37.037 4.30 0.00 41.69 3.41
2257 4896 8.375506 TGGAGTACAGGTGATAATATCAAATCC 58.624 37.037 4.30 7.78 41.69 3.01
2258 4897 9.429359 CTGGAGTACAGGTGATAATATCAAATC 57.571 37.037 4.30 0.00 43.70 2.17
2275 4914 2.696526 ACACCTTCTCCTGGAGTACA 57.303 50.000 22.50 8.01 0.00 2.90
2276 4915 2.234168 GGAACACCTTCTCCTGGAGTAC 59.766 54.545 22.50 0.00 0.00 2.73
2277 4916 2.537143 GGAACACCTTCTCCTGGAGTA 58.463 52.381 22.50 12.99 0.00 2.59
2279 4918 0.247736 CGGAACACCTTCTCCTGGAG 59.752 60.000 17.84 17.84 0.00 3.86
2280 4919 1.827399 GCGGAACACCTTCTCCTGGA 61.827 60.000 0.00 0.00 0.00 3.86
2281 4920 1.376037 GCGGAACACCTTCTCCTGG 60.376 63.158 0.00 0.00 0.00 4.45
2284 4923 3.967715 GTGCGGAACACCTTCTCC 58.032 61.111 0.00 0.00 44.02 3.71
2293 4932 2.266055 CCTCCCAGAGTGCGGAAC 59.734 66.667 0.00 0.00 0.00 3.62
2294 4933 2.798445 TAGCCTCCCAGAGTGCGGAA 62.798 60.000 0.00 0.00 33.40 4.30
2295 4934 2.798445 TTAGCCTCCCAGAGTGCGGA 62.798 60.000 0.00 0.00 33.40 5.54
2297 4936 0.460987 CTTTAGCCTCCCAGAGTGCG 60.461 60.000 0.00 0.00 33.40 5.34
2298 4937 0.746204 GCTTTAGCCTCCCAGAGTGC 60.746 60.000 0.00 0.00 34.31 4.40
2299 4938 3.467776 GCTTTAGCCTCCCAGAGTG 57.532 57.895 0.00 0.00 34.31 3.51
2310 4949 0.109735 GCGTTGGAGTTGGCTTTAGC 60.110 55.000 0.00 0.00 41.14 3.09
2313 4952 0.751643 AGTGCGTTGGAGTTGGCTTT 60.752 50.000 0.00 0.00 0.00 3.51
2314 4953 1.152963 AGTGCGTTGGAGTTGGCTT 60.153 52.632 0.00 0.00 0.00 4.35
2315 4954 1.893808 CAGTGCGTTGGAGTTGGCT 60.894 57.895 0.00 0.00 0.00 4.75
2316 4955 1.845809 CTCAGTGCGTTGGAGTTGGC 61.846 60.000 0.00 0.00 0.00 4.52
2318 4957 1.571460 GCTCAGTGCGTTGGAGTTG 59.429 57.895 0.00 0.00 0.00 3.16
2319 4958 1.598130 GGCTCAGTGCGTTGGAGTT 60.598 57.895 0.00 0.00 44.05 3.01
2320 4959 2.031163 GGCTCAGTGCGTTGGAGT 59.969 61.111 0.00 0.00 44.05 3.85
2321 4960 1.165907 TTTGGCTCAGTGCGTTGGAG 61.166 55.000 0.00 0.00 44.05 3.86
2322 4961 0.537143 ATTTGGCTCAGTGCGTTGGA 60.537 50.000 0.00 0.00 44.05 3.53
2323 4962 0.387622 CATTTGGCTCAGTGCGTTGG 60.388 55.000 0.00 0.00 44.05 3.77
2324 4963 0.387622 CCATTTGGCTCAGTGCGTTG 60.388 55.000 0.00 0.00 44.05 4.10
2325 4964 0.823356 ACCATTTGGCTCAGTGCGTT 60.823 50.000 0.00 0.00 44.05 4.84
2326 4965 0.823356 AACCATTTGGCTCAGTGCGT 60.823 50.000 0.00 0.00 44.05 5.24
2328 4967 1.069049 ACAAACCATTTGGCTCAGTGC 59.931 47.619 6.28 0.00 44.81 4.40
2329 4968 3.457610 AACAAACCATTTGGCTCAGTG 57.542 42.857 6.28 0.00 44.81 3.66
2331 4970 3.578688 GCTAACAAACCATTTGGCTCAG 58.421 45.455 6.28 0.00 44.81 3.35
2333 4972 2.030274 ACGCTAACAAACCATTTGGCTC 60.030 45.455 6.28 0.00 44.81 4.70
2334 4973 1.960689 ACGCTAACAAACCATTTGGCT 59.039 42.857 6.28 0.00 44.81 4.75
2335 4974 2.030274 AGACGCTAACAAACCATTTGGC 60.030 45.455 6.28 0.00 44.81 4.52
2336 4975 3.915437 AGACGCTAACAAACCATTTGG 57.085 42.857 6.28 0.00 44.81 3.28
2353 4998 4.024302 CCCTCTTTTGTGTCCGTTTAAGAC 60.024 45.833 0.00 0.00 34.72 3.01
2354 4999 4.131596 CCCTCTTTTGTGTCCGTTTAAGA 58.868 43.478 0.00 0.00 0.00 2.10
2355 5000 3.304458 GCCCTCTTTTGTGTCCGTTTAAG 60.304 47.826 0.00 0.00 0.00 1.85
2356 5001 2.619646 GCCCTCTTTTGTGTCCGTTTAA 59.380 45.455 0.00 0.00 0.00 1.52
2357 5002 2.223745 GCCCTCTTTTGTGTCCGTTTA 58.776 47.619 0.00 0.00 0.00 2.01
2358 5003 1.029681 GCCCTCTTTTGTGTCCGTTT 58.970 50.000 0.00 0.00 0.00 3.60
2359 5004 0.822121 GGCCCTCTTTTGTGTCCGTT 60.822 55.000 0.00 0.00 0.00 4.44
2360 5005 1.228154 GGCCCTCTTTTGTGTCCGT 60.228 57.895 0.00 0.00 0.00 4.69
2361 5006 1.971695 GGGCCCTCTTTTGTGTCCG 60.972 63.158 17.04 0.00 0.00 4.79
2362 5007 1.606601 GGGGCCCTCTTTTGTGTCC 60.607 63.158 24.38 0.00 0.00 4.02
2363 5008 1.152830 TGGGGCCCTCTTTTGTGTC 59.847 57.895 25.93 0.18 0.00 3.67
2364 5009 1.152546 GTGGGGCCCTCTTTTGTGT 60.153 57.895 25.93 0.00 0.00 3.72
2365 5010 2.268076 CGTGGGGCCCTCTTTTGTG 61.268 63.158 25.93 2.07 0.00 3.33
2366 5011 2.115266 CGTGGGGCCCTCTTTTGT 59.885 61.111 25.93 0.00 0.00 2.83
2367 5012 2.115266 ACGTGGGGCCCTCTTTTG 59.885 61.111 25.93 9.89 0.00 2.44
2368 5013 2.115266 CACGTGGGGCCCTCTTTT 59.885 61.111 25.93 4.22 0.00 2.27
2369 5014 4.660938 GCACGTGGGGCCCTCTTT 62.661 66.667 25.93 6.97 0.00 2.52
2375 5020 3.887335 TTACTTCGCACGTGGGGCC 62.887 63.158 29.45 6.80 0.00 5.80
2376 5021 1.508808 TTTTACTTCGCACGTGGGGC 61.509 55.000 29.45 9.56 0.00 5.80
2377 5022 1.135803 CATTTTACTTCGCACGTGGGG 60.136 52.381 29.45 18.13 0.00 4.96
2378 5023 1.727857 GCATTTTACTTCGCACGTGGG 60.728 52.381 25.33 25.33 0.00 4.61
2379 5024 1.602191 GCATTTTACTTCGCACGTGG 58.398 50.000 18.88 7.71 0.00 4.94
2380 5025 1.196808 AGGCATTTTACTTCGCACGTG 59.803 47.619 12.28 12.28 0.00 4.49
2381 5026 1.463444 GAGGCATTTTACTTCGCACGT 59.537 47.619 0.00 0.00 0.00 4.49
2382 5027 1.463056 TGAGGCATTTTACTTCGCACG 59.537 47.619 0.00 0.00 0.00 5.34
2383 5028 2.225491 TGTGAGGCATTTTACTTCGCAC 59.775 45.455 0.00 0.00 0.00 5.34
2384 5029 2.225491 GTGTGAGGCATTTTACTTCGCA 59.775 45.455 0.00 0.00 0.00 5.10
2385 5030 2.724839 CGTGTGAGGCATTTTACTTCGC 60.725 50.000 0.00 0.00 0.00 4.70
2386 5031 2.478894 ACGTGTGAGGCATTTTACTTCG 59.521 45.455 0.00 0.00 0.00 3.79
2387 5032 3.364964 CCACGTGTGAGGCATTTTACTTC 60.365 47.826 15.65 0.00 0.00 3.01
2388 5033 2.552315 CCACGTGTGAGGCATTTTACTT 59.448 45.455 15.65 0.00 0.00 2.24
2389 5034 2.151202 CCACGTGTGAGGCATTTTACT 58.849 47.619 15.65 0.00 0.00 2.24
2390 5035 2.147958 TCCACGTGTGAGGCATTTTAC 58.852 47.619 15.65 0.00 0.00 2.01
2391 5036 2.552599 TCCACGTGTGAGGCATTTTA 57.447 45.000 15.65 0.00 0.00 1.52
2392 5037 1.608590 CTTCCACGTGTGAGGCATTTT 59.391 47.619 15.65 0.00 0.00 1.82
2393 5038 1.238439 CTTCCACGTGTGAGGCATTT 58.762 50.000 15.65 0.00 0.00 2.32
2394 5039 0.108585 ACTTCCACGTGTGAGGCATT 59.891 50.000 15.65 0.00 0.00 3.56
2395 5040 0.973632 TACTTCCACGTGTGAGGCAT 59.026 50.000 15.65 0.50 0.00 4.40
2396 5041 0.753867 TTACTTCCACGTGTGAGGCA 59.246 50.000 15.65 0.05 0.00 4.75
2397 5042 1.529865 GTTTACTTCCACGTGTGAGGC 59.470 52.381 15.65 1.36 0.00 4.70
2398 5043 1.790623 CGTTTACTTCCACGTGTGAGG 59.209 52.381 15.65 13.70 0.00 3.86
2399 5044 1.790623 CCGTTTACTTCCACGTGTGAG 59.209 52.381 15.65 13.71 34.47 3.51
2404 5049 2.600470 TTGTCCGTTTACTTCCACGT 57.400 45.000 0.00 0.00 34.47 4.49
2434 5079 2.404186 GGGTCGAAAATGGGACGGC 61.404 63.158 0.00 0.00 33.99 5.68
2435 5080 0.393808 ATGGGTCGAAAATGGGACGG 60.394 55.000 0.00 0.00 33.99 4.79
2436 5081 1.459450 AATGGGTCGAAAATGGGACG 58.541 50.000 0.00 0.00 33.99 4.79
2442 5087 1.385528 GCCGGTAATGGGTCGAAAAT 58.614 50.000 1.90 0.00 0.00 1.82
2443 5088 0.677414 GGCCGGTAATGGGTCGAAAA 60.677 55.000 1.90 0.00 0.00 2.29
2448 5093 0.323087 AGTTTGGCCGGTAATGGGTC 60.323 55.000 1.90 0.00 0.00 4.46
2473 5126 0.791422 CGCGGGTGTTTGTTTCGATA 59.209 50.000 0.00 0.00 0.00 2.92
2474 5127 0.881159 TCGCGGGTGTTTGTTTCGAT 60.881 50.000 6.13 0.00 0.00 3.59
2491 5144 2.032634 CACACATCCCACCCGTTCG 61.033 63.158 0.00 0.00 0.00 3.95
2503 5156 1.380302 GGAGGACAAGGGCACACAT 59.620 57.895 0.00 0.00 0.00 3.21
2504 5157 2.829384 GGGAGGACAAGGGCACACA 61.829 63.158 0.00 0.00 0.00 3.72
2531 5184 1.963855 TGTTTGTGCCGTCGATGGG 60.964 57.895 24.85 13.14 0.00 4.00
2534 5187 1.964373 GGGTGTTTGTGCCGTCGAT 60.964 57.895 0.00 0.00 0.00 3.59
2567 5221 1.427072 CCATAGGGGGCGAAGGGAAT 61.427 60.000 0.00 0.00 0.00 3.01
2569 5223 2.447765 CCATAGGGGGCGAAGGGA 60.448 66.667 0.00 0.00 0.00 4.20
2603 5257 2.202810 GCTAGACAGCGAGGTGGC 60.203 66.667 7.23 3.42 38.22 5.01
2617 5271 1.654954 GCCTGAAGTCGACCGAGCTA 61.655 60.000 13.01 0.00 0.00 3.32
2625 5279 2.747686 GTTGGGGCCTGAAGTCGA 59.252 61.111 0.84 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.