Multiple sequence alignment - TraesCS7B01G083100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G083100 chr7B 100.000 2728 0 0 1 2728 93863710 93866437 0.000000e+00 5038.0
1 TraesCS7B01G083100 chr7B 86.293 1481 97 42 641 2072 93650368 93651791 0.000000e+00 1513.0
2 TraesCS7B01G083100 chr7B 87.118 1048 57 32 1265 2274 94185948 94184941 0.000000e+00 1116.0
3 TraesCS7B01G083100 chr7B 85.273 1100 115 26 1267 2335 157808846 157809929 0.000000e+00 1090.0
4 TraesCS7B01G083100 chr7B 89.294 850 43 23 1334 2148 94143107 94142271 0.000000e+00 1022.0
5 TraesCS7B01G083100 chr7B 90.851 776 32 15 1267 2023 93571907 93572662 0.000000e+00 1003.0
6 TraesCS7B01G083100 chr7B 90.865 624 14 18 1654 2274 94049536 94048953 0.000000e+00 797.0
7 TraesCS7B01G083100 chr7B 86.677 638 47 23 660 1272 94118631 94118007 0.000000e+00 673.0
8 TraesCS7B01G083100 chr7B 86.250 640 48 25 660 1272 94051075 94050449 0.000000e+00 658.0
9 TraesCS7B01G083100 chr7B 84.354 588 68 16 1 570 657557262 657556681 3.070000e-154 555.0
10 TraesCS7B01G083100 chr7B 84.391 583 64 18 1 570 435037398 435036830 5.140000e-152 547.0
11 TraesCS7B01G083100 chr7B 85.741 533 36 16 758 1272 93571368 93571878 6.690000e-146 527.0
12 TraesCS7B01G083100 chr7B 86.591 440 23 16 845 1272 94186390 94185975 1.150000e-123 453.0
13 TraesCS7B01G083100 chr7B 97.273 110 3 0 573 682 93838097 93838206 1.290000e-43 187.0
14 TraesCS7B01G083100 chr7B 97.273 110 3 0 573 682 93848137 93848246 1.290000e-43 187.0
15 TraesCS7B01G083100 chr7B 93.750 96 5 1 2053 2148 93572755 93572849 2.830000e-30 143.0
16 TraesCS7B01G083100 chr7B 92.500 80 5 1 2069 2148 93651924 93652002 2.220000e-21 113.0
17 TraesCS7B01G083100 chr7B 87.000 100 10 2 2180 2279 94142265 94142169 2.870000e-20 110.0
18 TraesCS7B01G083100 chr7B 94.203 69 4 0 2180 2248 93572855 93572923 3.720000e-19 106.0
19 TraesCS7B01G083100 chr7A 87.409 1374 80 38 758 2058 130782304 130783657 0.000000e+00 1493.0
20 TraesCS7B01G083100 chr7A 87.409 1374 80 37 758 2058 131121631 131120278 0.000000e+00 1493.0
21 TraesCS7B01G083100 chr7A 86.731 927 59 33 1267 2148 131109016 131108109 0.000000e+00 972.0
22 TraesCS7B01G083100 chr7A 86.541 691 41 30 1485 2148 130893568 130894233 0.000000e+00 713.0
23 TraesCS7B01G083100 chr7A 84.507 639 69 16 641 1272 130891461 130892076 3.000000e-169 604.0
24 TraesCS7B01G083100 chr7A 83.114 533 55 17 758 1272 131187680 131187165 1.150000e-123 453.0
25 TraesCS7B01G083100 chr7A 85.556 270 37 2 641 909 131109917 131109649 5.750000e-72 281.0
26 TraesCS7B01G083100 chr7A 79.653 403 50 12 2297 2680 130784979 130785368 7.490000e-66 261.0
27 TraesCS7B01G083100 chr7A 79.653 403 50 12 2297 2680 131118956 131118567 7.490000e-66 261.0
28 TraesCS7B01G083100 chr7A 81.173 324 30 21 1943 2264 130784691 130784985 5.870000e-57 231.0
29 TraesCS7B01G083100 chr7A 81.173 324 30 21 1943 2264 131119244 131118950 5.870000e-57 231.0
30 TraesCS7B01G083100 chr7A 81.221 213 12 7 2061 2273 203698120 203698304 2.190000e-31 147.0
31 TraesCS7B01G083100 chr7A 85.714 98 6 3 2306 2395 130784435 130784532 2.240000e-16 97.1
32 TraesCS7B01G083100 chr7A 85.714 98 6 3 2306 2395 131119500 131119403 2.240000e-16 97.1
33 TraesCS7B01G083100 chr7D 87.670 1322 85 39 767 2031 132156999 132158299 0.000000e+00 1467.0
34 TraesCS7B01G083100 chr7D 87.249 1145 64 33 1266 2376 132136068 132137164 0.000000e+00 1230.0
35 TraesCS7B01G083100 chr7D 91.160 905 53 16 1267 2148 132741535 132742435 0.000000e+00 1203.0
36 TraesCS7B01G083100 chr7D 92.512 828 44 13 1265 2075 132830469 132829643 0.000000e+00 1170.0
37 TraesCS7B01G083100 chr7D 89.198 935 49 25 1265 2148 132764150 132763217 0.000000e+00 1120.0
38 TraesCS7B01G083100 chr7D 85.742 1045 103 26 1265 2273 194129787 194130821 0.000000e+00 1062.0
39 TraesCS7B01G083100 chr7D 90.704 796 41 13 1289 2072 132748456 132749230 0.000000e+00 1029.0
40 TraesCS7B01G083100 chr7D 88.367 490 33 13 800 1272 132830978 132830496 3.940000e-158 568.0
41 TraesCS7B01G083100 chr7D 85.102 537 45 16 758 1269 132135510 132136036 1.450000e-142 516.0
42 TraesCS7B01G083100 chr7D 84.808 520 50 19 758 1272 132747912 132748407 1.890000e-136 496.0
43 TraesCS7B01G083100 chr7D 92.810 306 12 5 2420 2717 132137243 132137546 4.170000e-118 435.0
44 TraesCS7B01G083100 chr7D 92.359 301 20 3 570 868 132737225 132737524 2.510000e-115 425.0
45 TraesCS7B01G083100 chr7D 83.498 303 25 13 2445 2727 132138872 132139169 2.690000e-65 259.0
46 TraesCS7B01G083100 chr7D 94.366 71 4 0 2322 2392 132158852 132158922 2.870000e-20 110.0
47 TraesCS7B01G083100 chr7D 87.640 89 5 1 2310 2392 132205051 132205139 6.220000e-17 99.0
48 TraesCS7B01G083100 chr7D 93.478 46 2 1 2604 2648 132137381 132137426 1.750000e-07 67.6
49 TraesCS7B01G083100 chr6B 86.799 553 47 14 1 545 682125207 682124673 6.500000e-166 593.0
50 TraesCS7B01G083100 chrUn 85.269 577 56 17 1 570 2782547 2781993 3.940000e-158 568.0
51 TraesCS7B01G083100 chrUn 89.197 361 34 3 1 356 2835730 2835370 1.930000e-121 446.0
52 TraesCS7B01G083100 chr5A 84.524 588 68 14 1 567 568150230 568150815 6.600000e-156 560.0
53 TraesCS7B01G083100 chr5A 76.289 291 45 15 293 568 439875150 439874869 1.700000e-27 134.0
54 TraesCS7B01G083100 chr6D 84.300 586 60 25 1 570 301759929 301760498 6.640000e-151 544.0
55 TraesCS7B01G083100 chr6D 85.307 456 24 12 986 1441 457721321 457721733 5.400000e-117 431.0
56 TraesCS7B01G083100 chr6D 76.471 187 25 13 289 464 28038503 28038325 1.740000e-12 84.2
57 TraesCS7B01G083100 chr2B 84.766 512 44 18 68 567 11320692 11321181 1.470000e-132 483.0
58 TraesCS7B01G083100 chr2B 86.667 60 5 3 404 461 498861746 498861804 2.270000e-06 63.9
59 TraesCS7B01G083100 chr2B 85.000 60 4 5 402 461 427875931 427875985 3.790000e-04 56.5
60 TraesCS7B01G083100 chr3B 83.099 497 59 19 69 544 749716796 749716304 1.940000e-116 429.0
61 TraesCS7B01G083100 chr6A 76.976 291 43 18 293 568 34415278 34414997 7.870000e-31 145.0
62 TraesCS7B01G083100 chr3A 77.586 174 21 15 295 461 749872368 749872530 3.740000e-14 89.8
63 TraesCS7B01G083100 chr1D 78.125 160 22 10 313 464 24129629 24129475 3.740000e-14 89.8
64 TraesCS7B01G083100 chr5D 80.488 123 12 10 347 463 85464990 85464874 1.740000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G083100 chr7B 93863710 93866437 2727 False 5038.000 5038 100.00000 1 2728 1 chr7B.!!$F3 2727
1 TraesCS7B01G083100 chr7B 157808846 157809929 1083 False 1090.000 1090 85.27300 1267 2335 1 chr7B.!!$F4 1068
2 TraesCS7B01G083100 chr7B 93650368 93652002 1634 False 813.000 1513 89.39650 641 2148 2 chr7B.!!$F6 1507
3 TraesCS7B01G083100 chr7B 94184941 94186390 1449 True 784.500 1116 86.85450 845 2274 2 chr7B.!!$R6 1429
4 TraesCS7B01G083100 chr7B 94048953 94051075 2122 True 727.500 797 88.55750 660 2274 2 chr7B.!!$R4 1614
5 TraesCS7B01G083100 chr7B 94118007 94118631 624 True 673.000 673 86.67700 660 1272 1 chr7B.!!$R1 612
6 TraesCS7B01G083100 chr7B 94142169 94143107 938 True 566.000 1022 88.14700 1334 2279 2 chr7B.!!$R5 945
7 TraesCS7B01G083100 chr7B 657556681 657557262 581 True 555.000 555 84.35400 1 570 1 chr7B.!!$R3 569
8 TraesCS7B01G083100 chr7B 435036830 435037398 568 True 547.000 547 84.39100 1 570 1 chr7B.!!$R2 569
9 TraesCS7B01G083100 chr7B 93571368 93572923 1555 False 444.750 1003 91.13625 758 2248 4 chr7B.!!$F5 1490
10 TraesCS7B01G083100 chr7A 130891461 130894233 2772 False 658.500 713 85.52400 641 2148 2 chr7A.!!$F3 1507
11 TraesCS7B01G083100 chr7A 131108109 131109917 1808 True 626.500 972 86.14350 641 2148 2 chr7A.!!$R2 1507
12 TraesCS7B01G083100 chr7A 130782304 130785368 3064 False 520.525 1493 83.48725 758 2680 4 chr7A.!!$F2 1922
13 TraesCS7B01G083100 chr7A 131118567 131121631 3064 True 520.525 1493 83.48725 758 2680 4 chr7A.!!$R3 1922
14 TraesCS7B01G083100 chr7A 131187165 131187680 515 True 453.000 453 83.11400 758 1272 1 chr7A.!!$R1 514
15 TraesCS7B01G083100 chr7D 132741535 132742435 900 False 1203.000 1203 91.16000 1267 2148 1 chr7D.!!$F3 881
16 TraesCS7B01G083100 chr7D 132763217 132764150 933 True 1120.000 1120 89.19800 1265 2148 1 chr7D.!!$R1 883
17 TraesCS7B01G083100 chr7D 194129787 194130821 1034 False 1062.000 1062 85.74200 1265 2273 1 chr7D.!!$F4 1008
18 TraesCS7B01G083100 chr7D 132829643 132830978 1335 True 869.000 1170 90.43950 800 2075 2 chr7D.!!$R2 1275
19 TraesCS7B01G083100 chr7D 132156999 132158922 1923 False 788.500 1467 91.01800 767 2392 2 chr7D.!!$F6 1625
20 TraesCS7B01G083100 chr7D 132747912 132749230 1318 False 762.500 1029 87.75600 758 2072 2 chr7D.!!$F7 1314
21 TraesCS7B01G083100 chr7D 132135510 132139169 3659 False 501.520 1230 88.42740 758 2727 5 chr7D.!!$F5 1969
22 TraesCS7B01G083100 chr6B 682124673 682125207 534 True 593.000 593 86.79900 1 545 1 chr6B.!!$R1 544
23 TraesCS7B01G083100 chrUn 2781993 2782547 554 True 568.000 568 85.26900 1 570 1 chrUn.!!$R1 569
24 TraesCS7B01G083100 chr5A 568150230 568150815 585 False 560.000 560 84.52400 1 567 1 chr5A.!!$F1 566
25 TraesCS7B01G083100 chr6D 301759929 301760498 569 False 544.000 544 84.30000 1 570 1 chr6D.!!$F1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 657 0.111061 TCTGTTGCTTCCATGCAGGT 59.889 50.0 0.0 0.0 44.27 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 3863 0.179 CCTCCATGAGCACTACCACC 59.821 60.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 62 7.589954 ACGAGAACAAAATTTAACATTCCGAAG 59.410 33.333 0.00 0.00 0.00 3.79
170 179 8.825745 ACACTTTGAAAATGCGAACAATTATTT 58.174 25.926 0.00 0.00 0.00 1.40
227 236 9.587772 TTGAAACGATATTTGAAAACAGGAAAA 57.412 25.926 0.00 0.00 0.00 2.29
340 374 7.888250 AAGGAAAGAGAAACAGAAACAGAAT 57.112 32.000 0.00 0.00 0.00 2.40
341 375 7.269477 AGGAAAGAGAAACAGAAACAGAATG 57.731 36.000 0.00 0.00 46.00 2.67
345 379 6.292389 AGAGAAACAGAAACAGAATGAACG 57.708 37.500 0.00 0.00 39.69 3.95
361 395 8.899776 CAGAATGAACGAAAAAGAAAATGAGAG 58.100 33.333 0.00 0.00 39.69 3.20
399 435 9.489084 AAATAATAGAAAGCCAGAAAAACCAAC 57.511 29.630 0.00 0.00 0.00 3.77
404 440 6.179756 AGAAAGCCAGAAAAACCAACAAAAT 58.820 32.000 0.00 0.00 0.00 1.82
483 528 7.137490 CGTTTGGACGGACTATGTATATCTA 57.863 40.000 0.00 0.00 45.32 1.98
494 539 6.562228 ACTATGTATATCTAGAAGTGGGCCA 58.438 40.000 0.00 0.00 0.00 5.36
498 543 0.621571 ATCTAGAAGTGGGCCAGCCA 60.622 55.000 6.40 0.00 37.98 4.75
529 574 3.060615 GGCTTGGCTGCTCTGTGG 61.061 66.667 0.00 0.00 0.00 4.17
557 603 2.434359 ACTTTGCCGTAGCGAGCC 60.434 61.111 0.00 0.00 44.31 4.70
572 618 3.827634 GCCTCCAATAGGGTTGCG 58.172 61.111 0.00 0.00 46.65 4.85
573 619 1.077716 GCCTCCAATAGGGTTGCGT 60.078 57.895 0.00 0.00 46.65 5.24
574 620 1.095807 GCCTCCAATAGGGTTGCGTC 61.096 60.000 0.00 0.00 46.65 5.19
575 621 0.463833 CCTCCAATAGGGTTGCGTCC 60.464 60.000 0.00 0.00 42.32 4.79
576 622 0.251916 CTCCAATAGGGTTGCGTCCA 59.748 55.000 0.00 0.00 38.11 4.02
577 623 0.693622 TCCAATAGGGTTGCGTCCAA 59.306 50.000 0.00 0.00 38.11 3.53
578 624 1.074084 TCCAATAGGGTTGCGTCCAAA 59.926 47.619 0.00 0.00 38.11 3.28
579 625 1.889829 CCAATAGGGTTGCGTCCAAAA 59.110 47.619 0.00 0.00 31.68 2.44
580 626 2.297597 CCAATAGGGTTGCGTCCAAAAA 59.702 45.455 0.00 0.00 31.68 1.94
581 627 3.056179 CCAATAGGGTTGCGTCCAAAAAT 60.056 43.478 0.00 0.00 31.68 1.82
582 628 4.158764 CCAATAGGGTTGCGTCCAAAAATA 59.841 41.667 0.00 0.00 31.68 1.40
583 629 5.336849 CCAATAGGGTTGCGTCCAAAAATAA 60.337 40.000 0.00 0.00 31.68 1.40
584 630 3.653539 AGGGTTGCGTCCAAAAATAAC 57.346 42.857 0.00 0.00 31.68 1.89
585 631 2.959707 AGGGTTGCGTCCAAAAATAACA 59.040 40.909 0.00 0.00 31.68 2.41
586 632 3.385111 AGGGTTGCGTCCAAAAATAACAA 59.615 39.130 0.00 0.00 31.68 2.83
587 633 4.120589 GGGTTGCGTCCAAAAATAACAAA 58.879 39.130 0.00 0.00 31.68 2.83
588 634 4.210328 GGGTTGCGTCCAAAAATAACAAAG 59.790 41.667 0.00 0.00 31.68 2.77
589 635 4.318475 GGTTGCGTCCAAAAATAACAAAGC 60.318 41.667 0.00 0.00 31.68 3.51
590 636 4.046938 TGCGTCCAAAAATAACAAAGCA 57.953 36.364 0.00 0.00 0.00 3.91
591 637 4.433615 TGCGTCCAAAAATAACAAAGCAA 58.566 34.783 0.00 0.00 0.00 3.91
592 638 5.053145 TGCGTCCAAAAATAACAAAGCAAT 58.947 33.333 0.00 0.00 0.00 3.56
593 639 5.176590 TGCGTCCAAAAATAACAAAGCAATC 59.823 36.000 0.00 0.00 0.00 2.67
594 640 5.405269 GCGTCCAAAAATAACAAAGCAATCT 59.595 36.000 0.00 0.00 0.00 2.40
595 641 6.616260 GCGTCCAAAAATAACAAAGCAATCTG 60.616 38.462 0.00 0.00 0.00 2.90
596 642 6.420604 CGTCCAAAAATAACAAAGCAATCTGT 59.579 34.615 0.00 0.00 0.00 3.41
597 643 7.042791 CGTCCAAAAATAACAAAGCAATCTGTT 60.043 33.333 0.00 0.00 39.13 3.16
598 644 8.063630 GTCCAAAAATAACAAAGCAATCTGTTG 58.936 33.333 0.00 0.00 36.47 3.33
609 655 2.876091 CAATCTGTTGCTTCCATGCAG 58.124 47.619 0.00 0.00 44.27 4.41
610 656 1.471119 ATCTGTTGCTTCCATGCAGG 58.529 50.000 0.00 0.00 44.27 4.85
611 657 0.111061 TCTGTTGCTTCCATGCAGGT 59.889 50.000 0.00 0.00 44.27 4.00
612 658 0.524862 CTGTTGCTTCCATGCAGGTC 59.475 55.000 0.00 0.00 44.27 3.85
613 659 0.111061 TGTTGCTTCCATGCAGGTCT 59.889 50.000 0.00 0.00 44.27 3.85
614 660 1.350684 TGTTGCTTCCATGCAGGTCTA 59.649 47.619 0.00 0.00 44.27 2.59
615 661 1.740025 GTTGCTTCCATGCAGGTCTAC 59.260 52.381 0.00 0.00 44.27 2.59
616 662 1.279496 TGCTTCCATGCAGGTCTACT 58.721 50.000 0.00 0.00 38.12 2.57
617 663 2.466846 TGCTTCCATGCAGGTCTACTA 58.533 47.619 0.00 0.00 38.12 1.82
618 664 2.837591 TGCTTCCATGCAGGTCTACTAA 59.162 45.455 0.00 0.00 38.12 2.24
619 665 3.263170 TGCTTCCATGCAGGTCTACTAAA 59.737 43.478 0.00 0.00 38.12 1.85
620 666 4.261801 GCTTCCATGCAGGTCTACTAAAA 58.738 43.478 0.00 0.00 39.02 1.52
621 667 4.884164 GCTTCCATGCAGGTCTACTAAAAT 59.116 41.667 0.00 0.00 39.02 1.82
622 668 6.055588 GCTTCCATGCAGGTCTACTAAAATA 58.944 40.000 0.00 0.00 39.02 1.40
623 669 6.017852 GCTTCCATGCAGGTCTACTAAAATAC 60.018 42.308 0.00 0.00 39.02 1.89
624 670 6.553953 TCCATGCAGGTCTACTAAAATACA 57.446 37.500 0.00 0.00 39.02 2.29
625 671 7.136822 TCCATGCAGGTCTACTAAAATACAT 57.863 36.000 0.00 0.00 39.02 2.29
626 672 6.992123 TCCATGCAGGTCTACTAAAATACATG 59.008 38.462 0.00 0.00 39.02 3.21
627 673 6.205464 CCATGCAGGTCTACTAAAATACATGG 59.795 42.308 0.00 0.00 43.27 3.66
628 674 5.123227 TGCAGGTCTACTAAAATACATGGC 58.877 41.667 0.00 0.00 0.00 4.40
629 675 4.515567 GCAGGTCTACTAAAATACATGGCC 59.484 45.833 0.00 0.00 0.00 5.36
630 676 4.750098 CAGGTCTACTAAAATACATGGCCG 59.250 45.833 0.00 0.00 0.00 6.13
631 677 4.652421 AGGTCTACTAAAATACATGGCCGA 59.348 41.667 0.00 0.00 0.00 5.54
632 678 4.989168 GGTCTACTAAAATACATGGCCGAG 59.011 45.833 0.00 0.00 0.00 4.63
633 679 5.452917 GGTCTACTAAAATACATGGCCGAGT 60.453 44.000 0.00 0.82 0.00 4.18
634 680 5.462398 GTCTACTAAAATACATGGCCGAGTG 59.538 44.000 9.93 5.66 0.00 3.51
635 681 4.216411 ACTAAAATACATGGCCGAGTGT 57.784 40.909 9.93 11.12 0.00 3.55
636 682 5.347620 ACTAAAATACATGGCCGAGTGTA 57.652 39.130 15.18 15.18 35.49 2.90
637 683 5.925509 ACTAAAATACATGGCCGAGTGTAT 58.074 37.500 17.64 17.64 41.85 2.29
638 684 5.989777 ACTAAAATACATGGCCGAGTGTATC 59.010 40.000 21.41 0.00 39.83 2.24
639 685 4.415881 AAATACATGGCCGAGTGTATCA 57.584 40.909 21.41 4.55 39.83 2.15
646 692 1.066430 GGCCGAGTGTATCAAGTCCAA 60.066 52.381 0.00 0.00 0.00 3.53
698 744 9.476202 GTAGTCCAACTTTTAAAAGCAAATCAT 57.524 29.630 24.60 10.43 39.63 2.45
721 769 0.675837 TACCGACGTAGCTGAGCAGT 60.676 55.000 7.39 3.25 0.00 4.40
733 781 4.455606 AGCTGAGCAGTTCAAAAGTTAGT 58.544 39.130 7.39 0.00 34.81 2.24
735 783 5.698545 AGCTGAGCAGTTCAAAAGTTAGTAG 59.301 40.000 7.39 0.00 34.81 2.57
741 789 5.671329 GCAGTTCAAAAGTTAGTAGCATCCG 60.671 44.000 0.00 0.00 0.00 4.18
744 792 4.250464 TCAAAAGTTAGTAGCATCCGTGG 58.750 43.478 0.00 0.00 0.00 4.94
754 802 1.525995 CATCCGTGGCGCCCTAATT 60.526 57.895 26.77 2.73 0.00 1.40
765 813 1.745087 CGCCCTAATTGCACATCAACT 59.255 47.619 0.00 0.00 37.53 3.16
785 833 0.721718 AGCACGAATCGTAAAGCAGC 59.278 50.000 16.73 11.45 38.32 5.25
944 1047 4.565564 GCAAGAATCCAAAATCATCACAGC 59.434 41.667 0.00 0.00 0.00 4.40
956 1061 1.829849 CATCACAGCAGAGGGAGAGAA 59.170 52.381 0.00 0.00 0.00 2.87
957 1062 2.015456 TCACAGCAGAGGGAGAGAAA 57.985 50.000 0.00 0.00 0.00 2.52
958 1063 1.898472 TCACAGCAGAGGGAGAGAAAG 59.102 52.381 0.00 0.00 0.00 2.62
959 1064 1.898472 CACAGCAGAGGGAGAGAAAGA 59.102 52.381 0.00 0.00 0.00 2.52
960 1065 2.301296 CACAGCAGAGGGAGAGAAAGAA 59.699 50.000 0.00 0.00 0.00 2.52
1130 1453 4.317444 CCGCCCGTACAACACCCA 62.317 66.667 0.00 0.00 0.00 4.51
1131 1454 2.740826 CGCCCGTACAACACCCAG 60.741 66.667 0.00 0.00 0.00 4.45
1132 1455 2.428622 GCCCGTACAACACCCAGT 59.571 61.111 0.00 0.00 0.00 4.00
1133 1456 1.228033 GCCCGTACAACACCCAGTT 60.228 57.895 0.00 0.00 42.42 3.16
1134 1457 1.232621 GCCCGTACAACACCCAGTTC 61.233 60.000 0.00 0.00 38.74 3.01
1135 1458 0.107081 CCCGTACAACACCCAGTTCA 59.893 55.000 0.00 0.00 38.74 3.18
1161 1484 2.491022 GGAGGTCAGCCGCTACGAT 61.491 63.158 0.00 0.00 40.50 3.73
1238 1570 0.463833 GGTATGCTTCCGTTCCCCAG 60.464 60.000 0.00 0.00 0.00 4.45
1275 1654 3.390135 TCTTTGCGTTCGTTCTGATCTT 58.610 40.909 0.00 0.00 0.00 2.40
1395 1777 4.824515 AGACCGGCCTCTCCTCCG 62.825 72.222 0.00 0.00 44.89 4.63
1451 1842 4.808238 GAGGACGACGACGCGGTC 62.808 72.222 12.47 8.38 43.96 4.79
1529 3156 4.728772 ACAAGAACATCCTGGTGATCAAA 58.271 39.130 0.00 0.00 0.00 2.69
1732 3863 1.130749 CGTCAAGGTCGAGTAGTCCTG 59.869 57.143 0.00 0.00 38.40 3.86
1865 4040 1.302192 GTAGGTGAAGTTGGCCGCA 60.302 57.895 0.00 0.00 0.00 5.69
1926 4108 3.992643 TGCTTTGGTGATGAAATTGGTG 58.007 40.909 0.00 0.00 0.00 4.17
2148 4654 3.905784 CTTTCTGTAAAAAGCTGGGCAG 58.094 45.455 0.00 0.00 30.10 4.85
2150 4656 2.944129 TCTGTAAAAAGCTGGGCAGTT 58.056 42.857 0.00 0.00 0.00 3.16
2152 4658 3.818773 TCTGTAAAAAGCTGGGCAGTTAC 59.181 43.478 0.00 0.00 0.00 2.50
2153 4659 3.821033 CTGTAAAAAGCTGGGCAGTTACT 59.179 43.478 0.00 0.00 0.00 2.24
2154 4660 4.211920 TGTAAAAAGCTGGGCAGTTACTT 58.788 39.130 0.00 0.00 0.00 2.24
2155 4661 3.733443 AAAAAGCTGGGCAGTTACTTG 57.267 42.857 0.00 0.00 0.00 3.16
2156 4662 2.364972 AAAGCTGGGCAGTTACTTGT 57.635 45.000 0.00 0.00 0.00 3.16
2157 4663 2.364972 AAGCTGGGCAGTTACTTGTT 57.635 45.000 0.00 0.00 0.00 2.83
2158 4664 1.609208 AGCTGGGCAGTTACTTGTTG 58.391 50.000 0.00 0.00 0.00 3.33
2159 4665 1.142870 AGCTGGGCAGTTACTTGTTGA 59.857 47.619 0.00 0.00 0.00 3.18
2160 4666 1.266989 GCTGGGCAGTTACTTGTTGAC 59.733 52.381 0.00 0.00 0.00 3.18
2161 4667 2.851195 CTGGGCAGTTACTTGTTGACT 58.149 47.619 0.00 0.00 0.00 3.41
2162 4668 2.549754 CTGGGCAGTTACTTGTTGACTG 59.450 50.000 10.55 10.55 42.75 3.51
2163 4669 2.092646 TGGGCAGTTACTTGTTGACTGT 60.093 45.455 14.09 0.00 42.07 3.55
2164 4670 2.548480 GGGCAGTTACTTGTTGACTGTC 59.452 50.000 0.00 0.00 43.40 3.51
2165 4671 3.467803 GGCAGTTACTTGTTGACTGTCT 58.532 45.455 9.51 0.00 41.50 3.41
2166 4672 3.877508 GGCAGTTACTTGTTGACTGTCTT 59.122 43.478 9.51 0.00 41.50 3.01
2167 4673 5.054477 GGCAGTTACTTGTTGACTGTCTTA 58.946 41.667 9.51 0.00 41.50 2.10
2168 4674 5.526111 GGCAGTTACTTGTTGACTGTCTTAA 59.474 40.000 9.51 1.24 41.50 1.85
2169 4675 6.037830 GGCAGTTACTTGTTGACTGTCTTAAA 59.962 38.462 9.51 0.10 41.50 1.52
2170 4676 7.126398 GCAGTTACTTGTTGACTGTCTTAAAG 58.874 38.462 9.51 11.24 42.07 1.85
2171 4677 7.126398 CAGTTACTTGTTGACTGTCTTAAAGC 58.874 38.462 9.51 0.00 36.81 3.51
2172 4678 7.011482 CAGTTACTTGTTGACTGTCTTAAAGCT 59.989 37.037 9.51 0.00 36.81 3.74
2173 4679 8.202137 AGTTACTTGTTGACTGTCTTAAAGCTA 58.798 33.333 9.51 3.47 0.00 3.32
2174 4680 8.488764 GTTACTTGTTGACTGTCTTAAAGCTAG 58.511 37.037 9.51 0.33 0.00 3.42
2175 4681 6.583562 ACTTGTTGACTGTCTTAAAGCTAGT 58.416 36.000 9.51 0.91 0.00 2.57
2176 4682 6.702282 ACTTGTTGACTGTCTTAAAGCTAGTC 59.298 38.462 9.51 3.99 38.52 2.59
2177 4683 6.406692 TGTTGACTGTCTTAAAGCTAGTCT 57.593 37.500 9.51 0.00 38.76 3.24
2178 4684 6.448006 TGTTGACTGTCTTAAAGCTAGTCTC 58.552 40.000 9.51 6.00 38.76 3.36
2208 5692 6.589523 ACTCTCTGAAAATTTGACTGATCTCG 59.410 38.462 0.00 0.00 0.00 4.04
2289 5773 9.434420 TTTTTGCTTTCTTTTCTTTCATGAGAA 57.566 25.926 0.00 0.00 34.00 2.87
2392 7570 2.094575 TGTAGCGTTGTTGTGTGAACAC 59.905 45.455 6.63 6.63 46.59 3.32
2408 7586 5.587043 TGTGAACACTAACGGAATTTCAGTT 59.413 36.000 17.06 17.06 38.32 3.16
2439 7666 1.549203 ATTGGTGTGAATGGGCAGTC 58.451 50.000 0.00 0.00 0.00 3.51
2471 7711 1.098869 TGCTTGCTGTTCCGTGAAAA 58.901 45.000 0.00 0.00 0.00 2.29
2472 7712 1.680735 TGCTTGCTGTTCCGTGAAAAT 59.319 42.857 0.00 0.00 0.00 1.82
2473 7713 2.100584 TGCTTGCTGTTCCGTGAAAATT 59.899 40.909 0.00 0.00 0.00 1.82
2474 7714 3.123050 GCTTGCTGTTCCGTGAAAATTT 58.877 40.909 0.00 0.00 0.00 1.82
2475 7715 3.182372 GCTTGCTGTTCCGTGAAAATTTC 59.818 43.478 0.00 0.00 0.00 2.17
2476 7716 2.993545 TGCTGTTCCGTGAAAATTTCG 58.006 42.857 0.97 0.00 0.00 3.46
2488 7728 7.488471 TCCGTGAAAATTTCGTTTTGTGTTTAT 59.512 29.630 0.97 0.00 40.04 1.40
2584 7843 7.164122 AGATCTCATGCTTTGTGAGTTTCTTA 58.836 34.615 0.00 0.00 42.82 2.10
2650 7909 7.199766 TGTGATTTTCTTGGTGACATACAAAC 58.800 34.615 0.00 0.00 42.32 2.93
2658 7917 8.918202 TCTTGGTGACATACAAACTAGAATTT 57.082 30.769 0.00 0.00 42.32 1.82
2680 7939 3.058983 TCAGTATGCACAACGAAAAGCAG 60.059 43.478 0.00 0.00 40.71 4.24
2710 7970 7.467131 GCAATACACAAAAGAAATTGCCACTTT 60.467 33.333 7.01 0.00 44.11 2.66
2719 7979 6.959639 AGAAATTGCCACTTTTACTCTTCA 57.040 33.333 0.00 0.00 0.00 3.02
2722 7982 8.084684 AGAAATTGCCACTTTTACTCTTCAATC 58.915 33.333 0.00 0.00 0.00 2.67
2727 7987 6.655003 TGCCACTTTTACTCTTCAATCCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 37 7.801315 TCTTCGGAATGTTAAATTTTGTTCTCG 59.199 33.333 0.00 3.51 0.00 4.04
102 107 9.906660 AAAATGTTCTAATTCGCAGATTTTGTA 57.093 25.926 0.00 0.00 35.04 2.41
340 374 8.208718 TCTTCTCTCATTTTCTTTTTCGTTCA 57.791 30.769 0.00 0.00 0.00 3.18
341 375 9.503427 TTTCTTCTCTCATTTTCTTTTTCGTTC 57.497 29.630 0.00 0.00 0.00 3.95
371 407 9.705290 TGGTTTTTCTGGCTTTCTATTATTTTC 57.295 29.630 0.00 0.00 0.00 2.29
473 518 4.223923 GCTGGCCCACTTCTAGATATACAT 59.776 45.833 0.00 0.00 0.00 2.29
483 528 1.304713 CATTGGCTGGCCCACTTCT 60.305 57.895 9.28 0.00 45.34 2.85
494 539 1.518056 CCAGCGACACAACATTGGCT 61.518 55.000 0.00 0.00 0.00 4.75
498 543 0.311790 CAAGCCAGCGACACAACATT 59.688 50.000 0.00 0.00 0.00 2.71
549 595 0.105658 ACCCTATTGGAGGCTCGCTA 60.106 55.000 8.69 0.00 45.17 4.26
557 603 0.251916 TGGACGCAACCCTATTGGAG 59.748 55.000 0.00 0.00 38.00 3.86
570 616 5.405269 AGATTGCTTTGTTATTTTTGGACGC 59.595 36.000 0.00 0.00 0.00 5.19
571 617 6.420604 ACAGATTGCTTTGTTATTTTTGGACG 59.579 34.615 0.00 0.00 0.00 4.79
572 618 7.713764 ACAGATTGCTTTGTTATTTTTGGAC 57.286 32.000 0.00 0.00 0.00 4.02
573 619 8.140677 CAACAGATTGCTTTGTTATTTTTGGA 57.859 30.769 0.00 0.00 35.86 3.53
589 635 2.416836 CCTGCATGGAAGCAACAGATTG 60.417 50.000 0.00 0.00 45.13 2.67
590 636 1.822990 CCTGCATGGAAGCAACAGATT 59.177 47.619 0.00 0.00 45.13 2.40
591 637 1.272313 ACCTGCATGGAAGCAACAGAT 60.272 47.619 8.91 0.00 45.13 2.90
592 638 0.111061 ACCTGCATGGAAGCAACAGA 59.889 50.000 8.91 0.00 45.13 3.41
593 639 0.524862 GACCTGCATGGAAGCAACAG 59.475 55.000 8.91 0.00 45.13 3.16
594 640 0.111061 AGACCTGCATGGAAGCAACA 59.889 50.000 8.91 0.00 45.13 3.33
595 641 1.740025 GTAGACCTGCATGGAAGCAAC 59.260 52.381 8.91 0.00 45.13 4.17
596 642 1.630369 AGTAGACCTGCATGGAAGCAA 59.370 47.619 8.91 0.00 45.13 3.91
597 643 1.279496 AGTAGACCTGCATGGAAGCA 58.721 50.000 8.91 0.00 43.35 3.91
598 644 3.543680 TTAGTAGACCTGCATGGAAGC 57.456 47.619 8.91 0.00 39.71 3.86
599 645 7.047891 TGTATTTTAGTAGACCTGCATGGAAG 58.952 38.462 8.91 0.00 39.71 3.46
600 646 6.953101 TGTATTTTAGTAGACCTGCATGGAA 58.047 36.000 8.91 0.00 39.71 3.53
601 647 6.553953 TGTATTTTAGTAGACCTGCATGGA 57.446 37.500 8.91 0.00 39.71 3.41
602 648 6.205464 CCATGTATTTTAGTAGACCTGCATGG 59.795 42.308 0.00 0.00 42.05 3.66
603 649 6.293626 GCCATGTATTTTAGTAGACCTGCATG 60.294 42.308 0.00 0.00 0.00 4.06
604 650 5.765182 GCCATGTATTTTAGTAGACCTGCAT 59.235 40.000 0.00 0.00 0.00 3.96
605 651 5.123227 GCCATGTATTTTAGTAGACCTGCA 58.877 41.667 0.00 0.00 0.00 4.41
606 652 4.515567 GGCCATGTATTTTAGTAGACCTGC 59.484 45.833 0.00 0.00 0.00 4.85
607 653 4.750098 CGGCCATGTATTTTAGTAGACCTG 59.250 45.833 2.24 0.00 0.00 4.00
608 654 4.652421 TCGGCCATGTATTTTAGTAGACCT 59.348 41.667 2.24 0.00 0.00 3.85
609 655 4.952460 TCGGCCATGTATTTTAGTAGACC 58.048 43.478 2.24 0.00 0.00 3.85
610 656 5.462398 CACTCGGCCATGTATTTTAGTAGAC 59.538 44.000 2.24 0.00 0.00 2.59
611 657 5.128171 ACACTCGGCCATGTATTTTAGTAGA 59.872 40.000 2.24 0.00 0.00 2.59
612 658 5.357257 ACACTCGGCCATGTATTTTAGTAG 58.643 41.667 2.24 0.00 0.00 2.57
613 659 5.347620 ACACTCGGCCATGTATTTTAGTA 57.652 39.130 2.24 0.00 0.00 1.82
614 660 4.216411 ACACTCGGCCATGTATTTTAGT 57.784 40.909 2.24 0.00 0.00 2.24
615 661 5.989168 TGATACACTCGGCCATGTATTTTAG 59.011 40.000 19.88 2.29 41.12 1.85
616 662 5.919755 TGATACACTCGGCCATGTATTTTA 58.080 37.500 19.88 10.74 41.12 1.52
617 663 4.776349 TGATACACTCGGCCATGTATTTT 58.224 39.130 19.88 4.94 41.12 1.82
618 664 4.415881 TGATACACTCGGCCATGTATTT 57.584 40.909 19.88 5.52 41.12 1.40
619 665 4.141711 ACTTGATACACTCGGCCATGTATT 60.142 41.667 19.88 6.76 41.12 1.89
620 666 3.388024 ACTTGATACACTCGGCCATGTAT 59.612 43.478 19.28 19.28 43.19 2.29
621 667 2.764010 ACTTGATACACTCGGCCATGTA 59.236 45.455 12.51 12.51 35.82 2.29
622 668 1.555075 ACTTGATACACTCGGCCATGT 59.445 47.619 2.24 6.53 0.00 3.21
623 669 2.205074 GACTTGATACACTCGGCCATG 58.795 52.381 2.24 0.00 0.00 3.66
624 670 1.139058 GGACTTGATACACTCGGCCAT 59.861 52.381 2.24 0.00 0.00 4.40
625 671 0.535335 GGACTTGATACACTCGGCCA 59.465 55.000 2.24 0.00 0.00 5.36
626 672 0.535335 TGGACTTGATACACTCGGCC 59.465 55.000 0.00 0.00 0.00 6.13
627 673 2.000447 GTTGGACTTGATACACTCGGC 59.000 52.381 0.00 0.00 0.00 5.54
628 674 3.313012 TGTTGGACTTGATACACTCGG 57.687 47.619 0.00 0.00 0.00 4.63
629 675 4.509970 TGTTTGTTGGACTTGATACACTCG 59.490 41.667 0.00 0.00 0.00 4.18
630 676 5.527582 ACTGTTTGTTGGACTTGATACACTC 59.472 40.000 0.00 0.00 0.00 3.51
631 677 5.437060 ACTGTTTGTTGGACTTGATACACT 58.563 37.500 0.00 0.00 0.00 3.55
632 678 5.751243 ACTGTTTGTTGGACTTGATACAC 57.249 39.130 0.00 0.00 0.00 2.90
633 679 5.995282 CCTACTGTTTGTTGGACTTGATACA 59.005 40.000 0.00 0.00 42.85 2.29
634 680 6.228258 TCCTACTGTTTGTTGGACTTGATAC 58.772 40.000 0.00 0.00 43.68 2.24
635 681 6.428083 TCCTACTGTTTGTTGGACTTGATA 57.572 37.500 0.00 0.00 43.68 2.15
636 682 5.304686 TCCTACTGTTTGTTGGACTTGAT 57.695 39.130 0.00 0.00 43.68 2.57
637 683 4.764050 TCCTACTGTTTGTTGGACTTGA 57.236 40.909 0.00 0.00 43.68 3.02
646 692 6.403866 TTGCAATGAATTCCTACTGTTTGT 57.596 33.333 2.27 0.00 0.00 2.83
721 769 4.693566 CCACGGATGCTACTAACTTTTGAA 59.306 41.667 0.00 0.00 0.00 2.69
735 783 4.849310 TTAGGGCGCCACGGATGC 62.849 66.667 30.85 8.87 0.00 3.91
741 789 1.666209 ATGTGCAATTAGGGCGCCAC 61.666 55.000 30.85 17.99 40.93 5.01
744 792 0.455410 TTGATGTGCAATTAGGGCGC 59.545 50.000 0.00 0.00 41.95 6.53
754 802 2.162319 TTCGTGCTAGTTGATGTGCA 57.838 45.000 0.00 0.00 0.00 4.57
765 813 1.924524 GCTGCTTTACGATTCGTGCTA 59.075 47.619 21.40 4.36 41.39 3.49
798 846 0.827368 GGCCTCGAGTCTTCCAGAAT 59.173 55.000 12.31 0.00 0.00 2.40
944 1047 4.160252 CCTCTCTTTCTTTCTCTCCCTCTG 59.840 50.000 0.00 0.00 0.00 3.35
956 1061 4.757692 TCTCTTCCTTCCCTCTCTTTCTT 58.242 43.478 0.00 0.00 0.00 2.52
957 1062 4.045334 TCTCTCTTCCTTCCCTCTCTTTCT 59.955 45.833 0.00 0.00 0.00 2.52
958 1063 4.349365 TCTCTCTTCCTTCCCTCTCTTTC 58.651 47.826 0.00 0.00 0.00 2.62
959 1064 4.045334 TCTCTCTCTTCCTTCCCTCTCTTT 59.955 45.833 0.00 0.00 0.00 2.52
960 1065 3.596046 TCTCTCTCTTCCTTCCCTCTCTT 59.404 47.826 0.00 0.00 0.00 2.85
1130 1453 2.370189 CTGACCTCCTTGACCTTGAACT 59.630 50.000 0.00 0.00 0.00 3.01
1131 1454 2.772287 CTGACCTCCTTGACCTTGAAC 58.228 52.381 0.00 0.00 0.00 3.18
1132 1455 1.072331 GCTGACCTCCTTGACCTTGAA 59.928 52.381 0.00 0.00 0.00 2.69
1133 1456 0.687354 GCTGACCTCCTTGACCTTGA 59.313 55.000 0.00 0.00 0.00 3.02
1134 1457 0.322008 GGCTGACCTCCTTGACCTTG 60.322 60.000 0.00 0.00 0.00 3.61
1135 1458 1.831652 CGGCTGACCTCCTTGACCTT 61.832 60.000 0.00 0.00 0.00 3.50
1161 1484 0.939106 TGTAGTCGTCGTCGTCGTCA 60.939 55.000 11.41 5.17 38.33 4.35
1238 1570 4.683334 GAAACGGCGCACCACAGC 62.683 66.667 10.83 0.00 34.57 4.40
1275 1654 2.270352 ACATCAAGGACGGCAAAAGA 57.730 45.000 0.00 0.00 0.00 2.52
1342 1721 1.067283 CCATCAGAGACAGCAGACGTT 60.067 52.381 0.00 0.00 0.00 3.99
1343 1722 0.529833 CCATCAGAGACAGCAGACGT 59.470 55.000 0.00 0.00 0.00 4.34
1574 3204 2.654877 CGGTTGTACCTCGGCACT 59.345 61.111 0.00 0.00 35.66 4.40
1732 3863 0.179000 CCTCCATGAGCACTACCACC 59.821 60.000 0.00 0.00 0.00 4.61
2148 4654 7.247929 AGCTTTAAGACAGTCAACAAGTAAC 57.752 36.000 2.66 0.00 0.00 2.50
2150 4656 7.723324 ACTAGCTTTAAGACAGTCAACAAGTA 58.277 34.615 2.66 0.00 0.00 2.24
2152 4658 6.926272 AGACTAGCTTTAAGACAGTCAACAAG 59.074 38.462 20.57 2.61 38.45 3.16
2153 4659 6.817184 AGACTAGCTTTAAGACAGTCAACAA 58.183 36.000 20.57 0.00 38.45 2.83
2154 4660 6.406692 AGACTAGCTTTAAGACAGTCAACA 57.593 37.500 20.57 0.00 38.45 3.33
2155 4661 5.569823 CGAGACTAGCTTTAAGACAGTCAAC 59.430 44.000 20.57 15.06 38.45 3.18
2156 4662 5.700846 CGAGACTAGCTTTAAGACAGTCAA 58.299 41.667 20.57 0.00 38.45 3.18
2157 4663 4.379603 GCGAGACTAGCTTTAAGACAGTCA 60.380 45.833 20.57 0.00 38.45 3.41
2158 4664 4.099824 GCGAGACTAGCTTTAAGACAGTC 58.900 47.826 14.52 14.52 36.67 3.51
2159 4665 3.119424 GGCGAGACTAGCTTTAAGACAGT 60.119 47.826 7.53 0.00 34.52 3.55
2160 4666 3.129638 AGGCGAGACTAGCTTTAAGACAG 59.870 47.826 7.53 0.00 34.52 3.51
2161 4667 3.090037 AGGCGAGACTAGCTTTAAGACA 58.910 45.455 7.53 0.00 34.52 3.41
2162 4668 3.786516 AGGCGAGACTAGCTTTAAGAC 57.213 47.619 7.53 0.00 34.52 3.01
2163 4669 4.525024 AGTAGGCGAGACTAGCTTTAAGA 58.475 43.478 7.53 0.00 34.52 2.10
2164 4670 4.577283 AGAGTAGGCGAGACTAGCTTTAAG 59.423 45.833 7.53 0.00 34.52 1.85
2165 4671 4.525024 AGAGTAGGCGAGACTAGCTTTAA 58.475 43.478 7.53 0.00 34.52 1.52
2166 4672 4.128643 GAGAGTAGGCGAGACTAGCTTTA 58.871 47.826 7.53 0.00 34.52 1.85
2167 4673 2.946990 GAGAGTAGGCGAGACTAGCTTT 59.053 50.000 7.53 0.00 34.52 3.51
2168 4674 2.171870 AGAGAGTAGGCGAGACTAGCTT 59.828 50.000 7.53 2.34 34.52 3.74
2169 4675 1.766496 AGAGAGTAGGCGAGACTAGCT 59.234 52.381 7.53 0.00 34.52 3.32
2170 4676 1.871039 CAGAGAGTAGGCGAGACTAGC 59.129 57.143 0.00 0.00 0.00 3.42
2171 4677 3.462483 TCAGAGAGTAGGCGAGACTAG 57.538 52.381 0.00 0.00 0.00 2.57
2172 4678 3.908643 TTCAGAGAGTAGGCGAGACTA 57.091 47.619 0.00 0.00 0.00 2.59
2173 4679 2.791347 TTCAGAGAGTAGGCGAGACT 57.209 50.000 0.00 0.00 0.00 3.24
2174 4680 3.851976 TTTTCAGAGAGTAGGCGAGAC 57.148 47.619 0.00 0.00 0.00 3.36
2175 4681 5.047306 TCAAATTTTCAGAGAGTAGGCGAGA 60.047 40.000 0.00 0.00 0.00 4.04
2176 4682 5.062809 GTCAAATTTTCAGAGAGTAGGCGAG 59.937 44.000 0.00 0.00 0.00 5.03
2177 4683 4.929808 GTCAAATTTTCAGAGAGTAGGCGA 59.070 41.667 0.00 0.00 0.00 5.54
2178 4684 4.932200 AGTCAAATTTTCAGAGAGTAGGCG 59.068 41.667 0.00 0.00 0.00 5.52
2208 5692 1.986378 CTCCATGACGTCAAACTCGAC 59.014 52.381 24.13 0.00 0.00 4.20
2282 5766 8.540492 GCAAGCAAAAATCTTCATATTCTCATG 58.460 33.333 0.00 0.00 0.00 3.07
2283 5767 8.475639 AGCAAGCAAAAATCTTCATATTCTCAT 58.524 29.630 0.00 0.00 0.00 2.90
2285 5769 7.758528 ACAGCAAGCAAAAATCTTCATATTCTC 59.241 33.333 0.00 0.00 0.00 2.87
2286 5770 7.609056 ACAGCAAGCAAAAATCTTCATATTCT 58.391 30.769 0.00 0.00 0.00 2.40
2287 5771 7.823149 ACAGCAAGCAAAAATCTTCATATTC 57.177 32.000 0.00 0.00 0.00 1.75
2288 5772 7.332678 GGAACAGCAAGCAAAAATCTTCATATT 59.667 33.333 0.00 0.00 0.00 1.28
2289 5773 6.815142 GGAACAGCAAGCAAAAATCTTCATAT 59.185 34.615 0.00 0.00 0.00 1.78
2291 5775 4.992951 GGAACAGCAAGCAAAAATCTTCAT 59.007 37.500 0.00 0.00 0.00 2.57
2295 5956 2.362077 ACGGAACAGCAAGCAAAAATCT 59.638 40.909 0.00 0.00 0.00 2.40
2392 7570 3.906008 CGTGCAAACTGAAATTCCGTTAG 59.094 43.478 3.32 0.00 0.00 2.34
2408 7586 1.018148 ACACCAATTTCGTCGTGCAA 58.982 45.000 0.00 0.00 0.00 4.08
2439 7666 1.338973 AGCAAGCAACAACCATGAGTG 59.661 47.619 0.00 0.00 0.00 3.51
2471 7711 7.272037 ACAGAGGATAAACACAAAACGAAAT 57.728 32.000 0.00 0.00 0.00 2.17
2472 7712 6.687081 ACAGAGGATAAACACAAAACGAAA 57.313 33.333 0.00 0.00 0.00 3.46
2473 7713 6.687081 AACAGAGGATAAACACAAAACGAA 57.313 33.333 0.00 0.00 0.00 3.85
2474 7714 6.687081 AAACAGAGGATAAACACAAAACGA 57.313 33.333 0.00 0.00 0.00 3.85
2475 7715 6.854381 GGTAAACAGAGGATAAACACAAAACG 59.146 38.462 0.00 0.00 0.00 3.60
2476 7716 7.860872 CAGGTAAACAGAGGATAAACACAAAAC 59.139 37.037 0.00 0.00 0.00 2.43
2488 7728 6.097915 CTGTTCTTACAGGTAAACAGAGGA 57.902 41.667 14.51 0.00 46.52 3.71
2577 7836 5.907391 CCGATTGTGTTTGTCACTAAGAAAC 59.093 40.000 0.00 0.00 46.27 2.78
2584 7843 5.547465 TCTATTCCGATTGTGTTTGTCACT 58.453 37.500 0.00 0.00 46.27 3.41
2650 7909 6.647212 TCGTTGTGCATACTGAAATTCTAG 57.353 37.500 0.00 0.00 0.00 2.43
2658 7917 2.875317 TGCTTTTCGTTGTGCATACTGA 59.125 40.909 0.00 0.00 0.00 3.41
2680 7939 7.049140 GCAATTTCTTTTGTGTATTGCCTAC 57.951 36.000 0.00 0.00 43.10 3.18
2694 7954 7.781056 TGAAGAGTAAAAGTGGCAATTTCTTT 58.219 30.769 13.78 4.19 33.61 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.