Multiple sequence alignment - TraesCS7B01G082900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G082900 chr7B 100.000 2750 0 0 1 2750 93570628 93573377 0.000000e+00 5079.0
1 TraesCS7B01G082900 chr7B 88.083 1393 95 34 743 2077 94118530 94117151 0.000000e+00 1587.0
2 TraesCS7B01G082900 chr7B 89.926 1221 67 22 674 1882 94186520 94185344 0.000000e+00 1522.0
3 TraesCS7B01G082900 chr7B 89.680 969 63 15 743 1684 94050974 94050016 0.000000e+00 1201.0
4 TraesCS7B01G082900 chr7B 91.938 707 32 10 2059 2750 93651847 93652543 0.000000e+00 966.0
5 TraesCS7B01G082900 chr7B 85.741 533 36 14 741 1251 93864467 93864981 6.750000e-146 527.0
6 TraesCS7B01G082900 chr7B 89.640 222 22 1 2075 2296 157809629 157809849 5.800000e-72 281.0
7 TraesCS7B01G082900 chr7B 88.288 222 22 2 672 889 94143327 94143106 2.100000e-66 263.0
8 TraesCS7B01G082900 chr7B 90.909 176 15 1 2128 2302 94049150 94048975 4.580000e-58 235.0
9 TraesCS7B01G082900 chr7B 95.172 145 7 0 2160 2304 94142333 94142189 2.130000e-56 230.0
10 TraesCS7B01G082900 chr7B 85.024 207 29 2 318 523 94143782 94143577 2.780000e-50 209.0
11 TraesCS7B01G082900 chr7B 85.849 106 15 0 318 423 94187163 94187058 2.240000e-21 113.0
12 TraesCS7B01G082900 chr7D 85.755 1776 125 51 315 2012 132135085 132136810 0.000000e+00 1760.0
13 TraesCS7B01G082900 chr7D 86.534 1604 111 43 526 2078 132740793 132742342 0.000000e+00 1668.0
14 TraesCS7B01G082900 chr7D 87.973 1455 94 28 672 2077 132831072 132829650 0.000000e+00 1642.0
15 TraesCS7B01G082900 chr7D 89.239 1236 92 24 663 1882 132764760 132763550 0.000000e+00 1507.0
16 TraesCS7B01G082900 chr7D 87.687 1340 72 33 671 1965 132747841 132749132 0.000000e+00 1474.0
17 TraesCS7B01G082900 chr7D 87.715 1221 74 37 670 1849 132197135 132198320 0.000000e+00 1354.0
18 TraesCS7B01G082900 chr7D 87.306 1158 90 28 744 1882 194129259 194130378 0.000000e+00 1271.0
19 TraesCS7B01G082900 chr7D 80.763 629 64 32 2075 2665 132763355 132762746 3.250000e-119 438.0
20 TraesCS7B01G082900 chr7D 78.740 635 61 40 2073 2665 132158239 132158841 9.370000e-95 357.0
21 TraesCS7B01G082900 chr7D 92.544 228 16 1 2075 2302 132136827 132137053 2.640000e-85 326.0
22 TraesCS7B01G082900 chr7D 78.669 511 62 30 2081 2557 132829679 132829182 2.070000e-76 296.0
23 TraesCS7B01G082900 chr7D 89.593 221 20 2 2075 2295 132749191 132749408 7.500000e-71 278.0
24 TraesCS7B01G082900 chr7D 88.571 210 20 4 315 523 132739653 132739859 4.550000e-63 252.0
25 TraesCS7B01G082900 chr7D 85.577 208 25 5 318 523 132832381 132832177 2.150000e-51 213.0
26 TraesCS7B01G082900 chr7D 89.375 160 14 3 2509 2665 132742636 132742795 6.010000e-47 198.0
27 TraesCS7B01G082900 chr7D 86.471 170 8 5 2511 2665 132138393 132138562 3.640000e-39 172.0
28 TraesCS7B01G082900 chr7D 86.957 115 7 7 2356 2468 132138276 132138384 3.720000e-24 122.0
29 TraesCS7B01G082900 chr7D 89.000 100 8 2 2566 2665 132204822 132204918 1.340000e-23 121.0
30 TraesCS7B01G082900 chr7D 82.143 140 16 9 2331 2468 132742497 132742629 8.050000e-21 111.0
31 TraesCS7B01G082900 chr7D 93.151 73 5 0 2676 2748 132161772 132161844 1.040000e-19 108.0
32 TraesCS7B01G082900 chr7A 87.204 1563 117 44 566 2070 130782123 130783660 0.000000e+00 1701.0
33 TraesCS7B01G082900 chr7A 87.283 1557 115 44 572 2070 131121806 131120275 0.000000e+00 1701.0
34 TraesCS7B01G082900 chr7A 87.409 1231 112 26 676 1882 131187744 131186533 0.000000e+00 1375.0
35 TraesCS7B01G082900 chr7A 89.932 1023 43 23 871 1880 210252272 210253247 0.000000e+00 1264.0
36 TraesCS7B01G082900 chr7A 81.320 621 71 29 2075 2665 210253445 210254050 1.930000e-126 462.0
37 TraesCS7B01G082900 chr7A 80.317 630 62 33 2075 2665 131108247 131107641 1.180000e-113 420.0
38 TraesCS7B01G082900 chr7A 87.415 294 16 5 1805 2077 130893837 130894130 4.420000e-83 318.0
39 TraesCS7B01G082900 chr7A 90.090 222 22 0 2075 2296 203698059 203698280 3.470000e-74 289.0
40 TraesCS7B01G082900 chr7A 90.521 211 17 2 315 523 130781583 130781792 2.700000e-70 276.0
41 TraesCS7B01G082900 chr7A 90.385 208 16 3 318 523 131126658 131126453 1.260000e-68 270.0
42 TraesCS7B01G082900 chr7A 91.061 179 13 1 1902 2077 131108390 131108212 3.540000e-59 239.0
43 TraesCS7B01G082900 chr7A 91.515 165 12 2 2138 2301 130784812 130784975 2.760000e-55 226.0
44 TraesCS7B01G082900 chr7A 91.515 165 12 2 2138 2301 131119123 131118960 2.760000e-55 226.0
45 TraesCS7B01G082900 chr7A 88.649 185 18 1 1896 2077 131186485 131186301 3.560000e-54 222.0
46 TraesCS7B01G082900 chr7A 87.568 185 18 5 1896 2077 203697912 203698094 2.780000e-50 209.0
47 TraesCS7B01G082900 chr7A 87.195 164 12 4 2511 2665 130784143 130784306 7.830000e-41 178.0
48 TraesCS7B01G082900 chr7A 87.195 164 12 4 2511 2665 131119792 131119629 7.830000e-41 178.0
49 TraesCS7B01G082900 chr7A 91.837 98 8 0 426 523 131122007 131121910 1.330000e-28 137.0
50 TraesCS7B01G082900 chr7A 100.000 29 0 0 495 523 130781997 130782025 1.000000e-03 54.7
51 TraesCS7B01G082900 chr3D 88.589 333 21 2 5 320 29495559 29495227 3.320000e-104 388.0
52 TraesCS7B01G082900 chr3D 88.589 333 21 2 5 320 29567427 29567095 3.320000e-104 388.0
53 TraesCS7B01G082900 chr3D 87.988 333 23 2 5 320 29530488 29530156 7.190000e-101 377.0
54 TraesCS7B01G082900 chr3D 87.988 333 23 2 5 320 29583012 29582680 7.190000e-101 377.0
55 TraesCS7B01G082900 chr3D 87.387 333 25 2 5 320 573425361 573425029 1.560000e-97 366.0
56 TraesCS7B01G082900 chrUn 87.988 333 23 2 5 320 342979797 342980129 7.190000e-101 377.0
57 TraesCS7B01G082900 chrUn 87.688 333 24 4 5 320 223003907 223003575 3.340000e-99 372.0
58 TraesCS7B01G082900 chr6D 87.988 333 23 2 5 320 49455439 49455107 7.190000e-101 377.0
59 TraesCS7B01G082900 chr6B 86.787 333 27 2 5 320 497226684 497226352 3.370000e-94 355.0
60 TraesCS7B01G082900 chr6B 81.188 303 33 12 1085 1378 58055933 58055646 3.560000e-54 222.0
61 TraesCS7B01G082900 chr6B 96.970 33 1 0 2718 2750 632960126 632960158 3.830000e-04 56.5
62 TraesCS7B01G082900 chr3B 86.787 333 27 8 5 320 167110729 167110397 3.370000e-94 355.0
63 TraesCS7B01G082900 chr1A 85.285 333 32 7 5 320 577785616 577785284 7.340000e-86 327.0
64 TraesCS7B01G082900 chr1A 96.970 33 1 0 2718 2750 319082415 319082447 3.830000e-04 56.5
65 TraesCS7B01G082900 chr5B 84.478 335 35 6 1 318 450688997 450689331 5.720000e-82 315.0
66 TraesCS7B01G082900 chr4A 82.738 336 42 5 1 320 600620540 600620205 4.480000e-73 285.0
67 TraesCS7B01G082900 chr5A 90.217 92 9 0 7 98 320530878 320530787 1.340000e-23 121.0
68 TraesCS7B01G082900 chr4D 88.462 78 6 1 2676 2750 464866032 464866109 1.050000e-14 91.6
69 TraesCS7B01G082900 chr4B 88.462 78 6 1 2676 2750 581291227 581291304 1.050000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G082900 chr7B 93570628 93573377 2749 False 5079.00 5079 100.000000 1 2750 1 chr7B.!!$F1 2749
1 TraesCS7B01G082900 chr7B 94117151 94118530 1379 True 1587.00 1587 88.083000 743 2077 1 chr7B.!!$R1 1334
2 TraesCS7B01G082900 chr7B 93651847 93652543 696 False 966.00 966 91.938000 2059 2750 1 chr7B.!!$F2 691
3 TraesCS7B01G082900 chr7B 94185344 94187163 1819 True 817.50 1522 87.887500 318 1882 2 chr7B.!!$R4 1564
4 TraesCS7B01G082900 chr7B 94048975 94050974 1999 True 718.00 1201 90.294500 743 2302 2 chr7B.!!$R2 1559
5 TraesCS7B01G082900 chr7B 93864467 93864981 514 False 527.00 527 85.741000 741 1251 1 chr7B.!!$F3 510
6 TraesCS7B01G082900 chr7B 94142189 94143782 1593 True 234.00 263 89.494667 318 2304 3 chr7B.!!$R3 1986
7 TraesCS7B01G082900 chr7D 132197135 132198320 1185 False 1354.00 1354 87.715000 670 1849 1 chr7D.!!$F1 1179
8 TraesCS7B01G082900 chr7D 194129259 194130378 1119 False 1271.00 1271 87.306000 744 1882 1 chr7D.!!$F3 1138
9 TraesCS7B01G082900 chr7D 132762746 132764760 2014 True 972.50 1507 85.001000 663 2665 2 chr7D.!!$R1 2002
10 TraesCS7B01G082900 chr7D 132747841 132749408 1567 False 876.00 1474 88.640000 671 2295 2 chr7D.!!$F7 1624
11 TraesCS7B01G082900 chr7D 132829182 132832381 3199 True 717.00 1642 84.073000 318 2557 3 chr7D.!!$R2 2239
12 TraesCS7B01G082900 chr7D 132135085 132138562 3477 False 595.00 1760 87.931750 315 2665 4 chr7D.!!$F4 2350
13 TraesCS7B01G082900 chr7D 132739653 132742795 3142 False 557.25 1668 86.655750 315 2665 4 chr7D.!!$F6 2350
14 TraesCS7B01G082900 chr7D 132158239 132161844 3605 False 232.50 357 85.945500 2073 2748 2 chr7D.!!$F5 675
15 TraesCS7B01G082900 chr7A 210252272 210254050 1778 False 863.00 1264 85.626000 871 2665 2 chr7A.!!$F4 1794
16 TraesCS7B01G082900 chr7A 131186301 131187744 1443 True 798.50 1375 88.029000 676 2077 2 chr7A.!!$R4 1401
17 TraesCS7B01G082900 chr7A 131118960 131122007 3047 True 560.50 1701 89.457500 426 2665 4 chr7A.!!$R3 2239
18 TraesCS7B01G082900 chr7A 130781583 130784975 3392 False 487.14 1701 91.287000 315 2665 5 chr7A.!!$F2 2350
19 TraesCS7B01G082900 chr7A 131107641 131108390 749 True 329.50 420 85.689000 1902 2665 2 chr7A.!!$R2 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.035056 GTAGTGCCATGGTCCTGCTT 60.035 55.0 14.67 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 4744 0.753262 AACAAGGCGTCTCTCACACT 59.247 50.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.528537 CCATTTACATGGTCTTGATTGGAA 57.471 37.500 0.00 0.00 44.81 3.53
34 35 6.332630 CCATTTACATGGTCTTGATTGGAAC 58.667 40.000 0.00 0.00 44.81 3.62
35 36 6.153340 CCATTTACATGGTCTTGATTGGAACT 59.847 38.462 0.00 0.00 44.81 3.01
36 37 6.573664 TTTACATGGTCTTGATTGGAACTG 57.426 37.500 0.00 0.00 0.00 3.16
37 38 3.424703 ACATGGTCTTGATTGGAACTGG 58.575 45.455 0.00 0.00 0.00 4.00
38 39 1.909700 TGGTCTTGATTGGAACTGGC 58.090 50.000 0.00 0.00 0.00 4.85
39 40 1.144708 TGGTCTTGATTGGAACTGGCA 59.855 47.619 0.00 0.00 0.00 4.92
40 41 2.238521 GGTCTTGATTGGAACTGGCAA 58.761 47.619 0.00 0.00 0.00 4.52
41 42 2.029918 GGTCTTGATTGGAACTGGCAAC 60.030 50.000 0.00 0.00 0.00 4.17
42 43 2.029918 GTCTTGATTGGAACTGGCAACC 60.030 50.000 0.00 0.00 0.00 3.77
43 44 1.273327 CTTGATTGGAACTGGCAACCC 59.727 52.381 0.00 0.00 0.00 4.11
44 45 0.187117 TGATTGGAACTGGCAACCCA 59.813 50.000 0.00 0.00 39.32 4.51
45 46 1.203162 TGATTGGAACTGGCAACCCAT 60.203 47.619 3.48 0.00 41.21 4.00
46 47 1.205417 GATTGGAACTGGCAACCCATG 59.795 52.381 3.48 0.00 41.21 3.66
47 48 0.831288 TTGGAACTGGCAACCCATGG 60.831 55.000 4.14 4.14 41.21 3.66
48 49 1.076549 GGAACTGGCAACCCATGGA 59.923 57.895 15.22 0.00 41.21 3.41
49 50 0.324645 GGAACTGGCAACCCATGGAT 60.325 55.000 15.22 0.00 41.21 3.41
50 51 1.560505 GAACTGGCAACCCATGGATT 58.439 50.000 15.22 0.00 41.21 3.01
51 52 1.901833 GAACTGGCAACCCATGGATTT 59.098 47.619 15.22 2.60 41.21 2.17
52 53 1.269012 ACTGGCAACCCATGGATTTG 58.731 50.000 15.22 16.69 41.21 2.32
53 54 0.108041 CTGGCAACCCATGGATTTGC 60.108 55.000 29.50 29.50 44.05 3.68
54 55 0.835115 TGGCAACCCATGGATTTGCA 60.835 50.000 33.99 23.87 46.12 4.08
55 56 0.391528 GGCAACCCATGGATTTGCAC 60.392 55.000 33.99 25.05 46.12 4.57
56 57 0.391528 GCAACCCATGGATTTGCACC 60.392 55.000 31.10 13.13 44.17 5.01
57 58 0.249955 CAACCCATGGATTTGCACCC 59.750 55.000 15.22 0.00 0.00 4.61
58 59 0.178909 AACCCATGGATTTGCACCCA 60.179 50.000 15.22 4.37 36.79 4.51
59 60 0.178909 ACCCATGGATTTGCACCCAA 60.179 50.000 15.22 0.00 35.85 4.12
60 61 0.982704 CCCATGGATTTGCACCCAAA 59.017 50.000 15.22 0.00 44.39 3.28
73 74 7.961325 TTTGCACCCAAATTCTAAAAGAATC 57.039 32.000 2.79 0.00 43.67 2.52
74 75 6.036577 TGCACCCAAATTCTAAAAGAATCC 57.963 37.500 2.79 0.00 43.67 3.01
75 76 5.541868 TGCACCCAAATTCTAAAAGAATCCA 59.458 36.000 2.79 0.00 43.67 3.41
76 77 6.101997 GCACCCAAATTCTAAAAGAATCCAG 58.898 40.000 2.79 0.00 43.67 3.86
77 78 6.633856 CACCCAAATTCTAAAAGAATCCAGG 58.366 40.000 2.79 6.48 43.67 4.45
78 79 5.721480 ACCCAAATTCTAAAAGAATCCAGGG 59.279 40.000 20.90 20.90 43.67 4.45
79 80 5.129320 CCCAAATTCTAAAAGAATCCAGGGG 59.871 44.000 17.69 14.29 43.67 4.79
80 81 5.957774 CCAAATTCTAAAAGAATCCAGGGGA 59.042 40.000 2.79 0.00 43.67 4.81
81 82 6.440328 CCAAATTCTAAAAGAATCCAGGGGAA 59.560 38.462 2.79 0.00 43.67 3.97
82 83 7.323420 CAAATTCTAAAAGAATCCAGGGGAAC 58.677 38.462 2.79 0.00 43.67 3.62
83 84 5.592587 TTCTAAAAGAATCCAGGGGAACA 57.407 39.130 0.00 0.00 34.34 3.18
84 85 5.796502 TCTAAAAGAATCCAGGGGAACAT 57.203 39.130 0.00 0.00 34.34 2.71
85 86 5.755849 TCTAAAAGAATCCAGGGGAACATC 58.244 41.667 0.00 0.00 34.34 3.06
86 87 3.388552 AAAGAATCCAGGGGAACATCC 57.611 47.619 0.00 0.00 34.34 3.51
87 88 1.985622 AGAATCCAGGGGAACATCCA 58.014 50.000 0.00 0.00 38.64 3.41
88 89 1.566231 AGAATCCAGGGGAACATCCAC 59.434 52.381 0.00 0.00 41.37 4.02
93 94 3.335729 GGGGAACATCCACGGGGT 61.336 66.667 2.12 0.00 38.64 4.95
94 95 2.271173 GGGAACATCCACGGGGTC 59.729 66.667 2.12 0.00 38.64 4.46
95 96 2.598787 GGGAACATCCACGGGGTCA 61.599 63.158 2.12 0.00 38.64 4.02
96 97 1.376812 GGAACATCCACGGGGTCAC 60.377 63.158 2.12 0.00 36.28 3.67
97 98 1.376812 GAACATCCACGGGGTCACC 60.377 63.158 2.12 0.00 34.93 4.02
98 99 2.119484 GAACATCCACGGGGTCACCA 62.119 60.000 2.12 0.00 40.22 4.17
99 100 2.046314 CATCCACGGGGTCACCAC 60.046 66.667 2.12 0.00 40.22 4.16
100 101 3.327404 ATCCACGGGGTCACCACC 61.327 66.667 2.12 0.00 42.90 4.61
101 102 3.864983 ATCCACGGGGTCACCACCT 62.865 63.158 2.12 0.00 43.22 4.00
102 103 4.016706 CCACGGGGTCACCACCTC 62.017 72.222 0.00 0.00 43.22 3.85
103 104 4.016706 CACGGGGTCACCACCTCC 62.017 72.222 0.00 0.00 40.73 4.30
104 105 4.567597 ACGGGGTCACCACCTCCA 62.568 66.667 0.00 0.00 40.73 3.86
105 106 3.009115 CGGGGTCACCACCTCCAT 61.009 66.667 0.00 0.00 40.73 3.41
106 107 2.998949 GGGGTCACCACCTCCATC 59.001 66.667 0.00 0.00 43.22 3.51
107 108 1.923395 GGGGTCACCACCTCCATCA 60.923 63.158 0.00 0.00 43.22 3.07
108 109 1.497309 GGGGTCACCACCTCCATCAA 61.497 60.000 0.00 0.00 43.22 2.57
109 110 0.404040 GGGTCACCACCTCCATCAAA 59.596 55.000 0.00 0.00 43.22 2.69
110 111 1.534729 GGTCACCACCTCCATCAAAC 58.465 55.000 0.00 0.00 40.00 2.93
111 112 1.156736 GTCACCACCTCCATCAAACG 58.843 55.000 0.00 0.00 0.00 3.60
112 113 0.605319 TCACCACCTCCATCAAACGC 60.605 55.000 0.00 0.00 0.00 4.84
113 114 1.303317 ACCACCTCCATCAAACGCC 60.303 57.895 0.00 0.00 0.00 5.68
114 115 2.398554 CCACCTCCATCAAACGCCG 61.399 63.158 0.00 0.00 0.00 6.46
115 116 2.746277 ACCTCCATCAAACGCCGC 60.746 61.111 0.00 0.00 0.00 6.53
116 117 3.864686 CCTCCATCAAACGCCGCG 61.865 66.667 12.14 12.14 0.00 6.46
117 118 2.813474 CTCCATCAAACGCCGCGA 60.813 61.111 21.79 0.00 0.00 5.87
118 119 2.802667 CTCCATCAAACGCCGCGAG 61.803 63.158 21.79 8.98 0.00 5.03
119 120 4.520846 CCATCAAACGCCGCGAGC 62.521 66.667 21.79 8.84 38.52 5.03
120 121 3.787676 CATCAAACGCCGCGAGCA 61.788 61.111 21.79 0.04 44.04 4.26
121 122 3.490759 ATCAAACGCCGCGAGCAG 61.491 61.111 21.79 8.61 44.04 4.24
124 125 4.760047 AAACGCCGCGAGCAGGAT 62.760 61.111 21.79 0.00 44.04 3.24
128 129 4.819761 GCCGCGAGCAGGATGACA 62.820 66.667 8.23 0.00 42.97 3.58
129 130 2.107750 CCGCGAGCAGGATGACAT 59.892 61.111 8.23 0.00 39.69 3.06
130 131 1.953138 CCGCGAGCAGGATGACATC 60.953 63.158 8.23 6.91 39.69 3.06
131 132 1.227060 CGCGAGCAGGATGACATCA 60.227 57.895 17.08 0.00 39.69 3.07
132 133 0.599466 CGCGAGCAGGATGACATCAT 60.599 55.000 17.08 7.32 39.69 2.45
133 134 1.590932 GCGAGCAGGATGACATCATT 58.409 50.000 17.08 2.04 39.69 2.57
134 135 1.945394 GCGAGCAGGATGACATCATTT 59.055 47.619 17.08 0.91 39.69 2.32
135 136 2.032204 GCGAGCAGGATGACATCATTTC 60.032 50.000 17.08 9.02 39.69 2.17
136 137 3.464907 CGAGCAGGATGACATCATTTCT 58.535 45.455 17.08 9.16 39.69 2.52
137 138 3.247886 CGAGCAGGATGACATCATTTCTG 59.752 47.826 17.08 14.48 39.69 3.02
138 139 4.197750 GAGCAGGATGACATCATTTCTGT 58.802 43.478 17.08 6.14 39.69 3.41
139 140 5.363101 GAGCAGGATGACATCATTTCTGTA 58.637 41.667 17.08 0.00 39.69 2.74
140 141 5.366460 AGCAGGATGACATCATTTCTGTAG 58.634 41.667 17.08 0.00 39.69 2.74
141 142 5.104610 AGCAGGATGACATCATTTCTGTAGT 60.105 40.000 17.08 2.67 39.69 2.73
142 143 5.007430 GCAGGATGACATCATTTCTGTAGTG 59.993 44.000 17.08 0.00 39.69 2.74
143 144 5.007430 CAGGATGACATCATTTCTGTAGTGC 59.993 44.000 17.08 0.00 39.69 4.40
144 145 4.274459 GGATGACATCATTTCTGTAGTGCC 59.726 45.833 17.08 0.00 36.57 5.01
145 146 4.284829 TGACATCATTTCTGTAGTGCCA 57.715 40.909 0.00 0.00 0.00 4.92
146 147 4.847198 TGACATCATTTCTGTAGTGCCAT 58.153 39.130 0.00 0.00 0.00 4.40
147 148 4.637091 TGACATCATTTCTGTAGTGCCATG 59.363 41.667 0.00 0.00 0.00 3.66
148 149 3.949754 ACATCATTTCTGTAGTGCCATGG 59.050 43.478 7.63 7.63 0.00 3.66
149 150 3.719268 TCATTTCTGTAGTGCCATGGT 57.281 42.857 14.67 0.00 0.00 3.55
150 151 3.609853 TCATTTCTGTAGTGCCATGGTC 58.390 45.455 14.67 6.41 0.00 4.02
151 152 2.489938 TTTCTGTAGTGCCATGGTCC 57.510 50.000 14.67 4.01 0.00 4.46
152 153 1.656587 TTCTGTAGTGCCATGGTCCT 58.343 50.000 14.67 11.79 0.00 3.85
153 154 0.904649 TCTGTAGTGCCATGGTCCTG 59.095 55.000 14.67 1.77 0.00 3.86
154 155 0.745845 CTGTAGTGCCATGGTCCTGC 60.746 60.000 14.67 13.01 0.00 4.85
155 156 1.200760 TGTAGTGCCATGGTCCTGCT 61.201 55.000 14.67 7.19 0.00 4.24
156 157 0.035056 GTAGTGCCATGGTCCTGCTT 60.035 55.000 14.67 0.00 0.00 3.91
157 158 0.035152 TAGTGCCATGGTCCTGCTTG 60.035 55.000 14.67 0.00 0.00 4.01
158 159 2.677524 TGCCATGGTCCTGCTTGC 60.678 61.111 14.67 0.00 0.00 4.01
159 160 2.677524 GCCATGGTCCTGCTTGCA 60.678 61.111 14.67 0.00 0.00 4.08
160 161 2.707849 GCCATGGTCCTGCTTGCAG 61.708 63.158 14.67 15.02 0.00 4.41
161 162 1.303888 CCATGGTCCTGCTTGCAGT 60.304 57.895 19.49 0.00 0.00 4.40
162 163 0.035152 CCATGGTCCTGCTTGCAGTA 60.035 55.000 19.49 2.79 0.00 2.74
163 164 1.089920 CATGGTCCTGCTTGCAGTAC 58.910 55.000 19.49 14.54 0.00 2.73
164 165 0.692476 ATGGTCCTGCTTGCAGTACA 59.308 50.000 19.49 15.03 0.00 2.90
165 166 0.692476 TGGTCCTGCTTGCAGTACAT 59.308 50.000 19.49 0.00 0.00 2.29
166 167 1.089920 GGTCCTGCTTGCAGTACATG 58.910 55.000 19.49 5.81 0.00 3.21
167 168 1.339055 GGTCCTGCTTGCAGTACATGA 60.339 52.381 19.49 7.90 0.00 3.07
168 169 1.734465 GTCCTGCTTGCAGTACATGAC 59.266 52.381 19.49 14.90 0.00 3.06
169 170 0.723414 CCTGCTTGCAGTACATGACG 59.277 55.000 19.49 0.20 0.00 4.35
170 171 0.095935 CTGCTTGCAGTACATGACGC 59.904 55.000 13.89 2.95 0.00 5.19
171 172 1.298157 TGCTTGCAGTACATGACGCC 61.298 55.000 0.00 0.00 0.00 5.68
172 173 1.709760 CTTGCAGTACATGACGCCG 59.290 57.895 0.00 0.00 0.00 6.46
173 174 1.695893 CTTGCAGTACATGACGCCGG 61.696 60.000 0.00 0.00 0.00 6.13
174 175 2.125673 GCAGTACATGACGCCGGT 60.126 61.111 1.90 0.00 0.00 5.28
175 176 2.165301 GCAGTACATGACGCCGGTC 61.165 63.158 1.90 0.00 43.71 4.79
176 177 1.511305 CAGTACATGACGCCGGTCT 59.489 57.895 1.90 0.00 43.79 3.85
177 178 0.525668 CAGTACATGACGCCGGTCTC 60.526 60.000 1.90 0.00 43.79 3.36
178 179 1.226888 GTACATGACGCCGGTCTCC 60.227 63.158 1.90 0.00 43.79 3.71
179 180 2.420568 TACATGACGCCGGTCTCCC 61.421 63.158 1.90 0.00 43.79 4.30
180 181 2.849096 TACATGACGCCGGTCTCCCT 62.849 60.000 1.90 0.00 43.79 4.20
181 182 3.148279 ATGACGCCGGTCTCCCTC 61.148 66.667 1.90 0.00 43.79 4.30
187 188 4.124943 CCGGTCTCCCTCCTCCGA 62.125 72.222 4.00 0.00 44.86 4.55
188 189 2.517402 CGGTCTCCCTCCTCCGAG 60.517 72.222 0.00 0.00 44.86 4.63
189 190 3.008408 GGTCTCCCTCCTCCGAGA 58.992 66.667 0.00 0.00 38.52 4.04
190 191 1.306970 GGTCTCCCTCCTCCGAGAA 59.693 63.158 0.00 0.00 38.52 2.87
191 192 0.753848 GGTCTCCCTCCTCCGAGAAG 60.754 65.000 0.00 0.00 38.52 2.85
192 193 0.753848 GTCTCCCTCCTCCGAGAAGG 60.754 65.000 0.00 0.00 38.52 3.46
193 194 1.215679 TCTCCCTCCTCCGAGAAGGT 61.216 60.000 0.00 0.00 41.99 3.50
194 195 1.000486 TCCCTCCTCCGAGAAGGTG 60.000 63.158 0.00 0.00 41.99 4.00
195 196 1.000486 CCCTCCTCCGAGAAGGTGA 60.000 63.158 0.00 0.00 41.99 4.02
196 197 0.397816 CCCTCCTCCGAGAAGGTGAT 60.398 60.000 0.00 0.00 41.99 3.06
197 198 0.749649 CCTCCTCCGAGAAGGTGATG 59.250 60.000 0.00 0.00 41.99 3.07
198 199 1.686428 CCTCCTCCGAGAAGGTGATGA 60.686 57.143 0.00 0.00 41.99 2.92
199 200 1.407258 CTCCTCCGAGAAGGTGATGAC 59.593 57.143 0.00 0.00 41.99 3.06
200 201 0.101399 CCTCCGAGAAGGTGATGACG 59.899 60.000 0.00 0.00 41.99 4.35
201 202 1.095600 CTCCGAGAAGGTGATGACGA 58.904 55.000 0.00 0.00 41.99 4.20
202 203 1.472878 CTCCGAGAAGGTGATGACGAA 59.527 52.381 0.00 0.00 41.99 3.85
203 204 1.201647 TCCGAGAAGGTGATGACGAAC 59.798 52.381 0.00 0.00 41.99 3.95
204 205 1.630148 CGAGAAGGTGATGACGAACC 58.370 55.000 0.00 0.00 36.66 3.62
205 206 1.736032 CGAGAAGGTGATGACGAACCC 60.736 57.143 0.00 0.00 37.13 4.11
206 207 0.613777 AGAAGGTGATGACGAACCCC 59.386 55.000 0.00 0.00 37.13 4.95
207 208 0.392595 GAAGGTGATGACGAACCCCC 60.393 60.000 0.00 0.00 37.13 5.40
224 225 3.160679 CCCCCATCTTCACTTTTGACT 57.839 47.619 0.00 0.00 0.00 3.41
225 226 3.084786 CCCCCATCTTCACTTTTGACTC 58.915 50.000 0.00 0.00 0.00 3.36
226 227 2.744202 CCCCATCTTCACTTTTGACTCG 59.256 50.000 0.00 0.00 0.00 4.18
227 228 2.160417 CCCATCTTCACTTTTGACTCGC 59.840 50.000 0.00 0.00 0.00 5.03
228 229 2.160417 CCATCTTCACTTTTGACTCGCC 59.840 50.000 0.00 0.00 0.00 5.54
229 230 1.497991 TCTTCACTTTTGACTCGCCG 58.502 50.000 0.00 0.00 0.00 6.46
230 231 0.110644 CTTCACTTTTGACTCGCCGC 60.111 55.000 0.00 0.00 0.00 6.53
231 232 1.827315 TTCACTTTTGACTCGCCGCG 61.827 55.000 6.39 6.39 0.00 6.46
232 233 3.712881 ACTTTTGACTCGCCGCGC 61.713 61.111 8.21 0.00 0.00 6.86
233 234 3.711842 CTTTTGACTCGCCGCGCA 61.712 61.111 8.75 0.00 0.00 6.09
234 235 3.635734 CTTTTGACTCGCCGCGCAG 62.636 63.158 8.75 9.13 0.00 5.18
252 253 3.142838 CCGCCATGGCCCTTTCAG 61.143 66.667 30.79 14.53 37.98 3.02
253 254 3.830192 CGCCATGGCCCTTTCAGC 61.830 66.667 30.79 2.76 37.98 4.26
254 255 2.363406 GCCATGGCCCTTTCAGCT 60.363 61.111 27.24 0.00 34.56 4.24
255 256 2.421399 GCCATGGCCCTTTCAGCTC 61.421 63.158 27.24 0.00 34.56 4.09
256 257 2.117156 CCATGGCCCTTTCAGCTCG 61.117 63.158 0.00 0.00 0.00 5.03
257 258 1.377725 CATGGCCCTTTCAGCTCGT 60.378 57.895 0.00 0.00 0.00 4.18
258 259 0.962356 CATGGCCCTTTCAGCTCGTT 60.962 55.000 0.00 0.00 0.00 3.85
259 260 0.962356 ATGGCCCTTTCAGCTCGTTG 60.962 55.000 0.00 0.00 0.00 4.10
260 261 1.302511 GGCCCTTTCAGCTCGTTGA 60.303 57.895 0.00 0.00 0.00 3.18
261 262 1.578206 GGCCCTTTCAGCTCGTTGAC 61.578 60.000 0.00 0.00 0.00 3.18
262 263 1.901650 GCCCTTTCAGCTCGTTGACG 61.902 60.000 0.00 0.00 41.45 4.35
264 265 0.784778 CCTTTCAGCTCGTTGACGAC 59.215 55.000 1.52 0.68 44.22 4.34
284 285 2.285368 CCTGGGGTCAGCCAGGTA 60.285 66.667 0.41 0.00 46.01 3.08
285 286 1.694169 CCTGGGGTCAGCCAGGTAT 60.694 63.158 0.41 0.00 46.01 2.73
286 287 1.528824 CTGGGGTCAGCCAGGTATG 59.471 63.158 0.00 0.00 36.17 2.39
299 300 4.138487 CCAGGTATGGTGAAAGTACCTC 57.862 50.000 0.53 0.00 44.79 3.85
300 301 3.517901 CCAGGTATGGTGAAAGTACCTCA 59.482 47.826 0.53 0.00 44.79 3.86
301 302 4.504858 CAGGTATGGTGAAAGTACCTCAC 58.495 47.826 14.53 14.53 44.79 3.51
306 307 2.180432 GTGAAAGTACCTCACCCACC 57.820 55.000 12.62 0.00 37.77 4.61
307 308 1.418637 GTGAAAGTACCTCACCCACCA 59.581 52.381 12.62 0.00 37.77 4.17
308 309 1.418637 TGAAAGTACCTCACCCACCAC 59.581 52.381 0.00 0.00 0.00 4.16
309 310 0.769247 AAAGTACCTCACCCACCACC 59.231 55.000 0.00 0.00 0.00 4.61
310 311 0.104620 AAGTACCTCACCCACCACCT 60.105 55.000 0.00 0.00 0.00 4.00
311 312 0.836400 AGTACCTCACCCACCACCTG 60.836 60.000 0.00 0.00 0.00 4.00
312 313 2.221299 TACCTCACCCACCACCTGC 61.221 63.158 0.00 0.00 0.00 4.85
313 314 2.689573 TACCTCACCCACCACCTGCT 62.690 60.000 0.00 0.00 0.00 4.24
464 656 4.744137 TCAAAGCATGTTTGGTTGATTTCG 59.256 37.500 15.89 0.00 42.53 3.46
490 682 7.710896 TGAATTTTCACAATGTGTACATGTGA 58.289 30.769 21.33 21.33 39.83 3.58
492 684 6.691754 TTTTCACAATGTGTACATGTGACT 57.308 33.333 23.78 0.00 40.50 3.41
493 685 5.671742 TTCACAATGTGTACATGTGACTG 57.328 39.130 23.78 8.81 40.50 3.51
624 2029 7.954788 TTTATTTTGGTGTGGATTGCTTTAC 57.045 32.000 0.00 0.00 0.00 2.01
651 2056 1.919918 CGCCAAGCAGACTAGAGAAG 58.080 55.000 0.00 0.00 0.00 2.85
702 2158 2.177531 CTTGCGCACCACATCAGC 59.822 61.111 11.12 0.00 0.00 4.26
734 2197 1.625315 CTTCATCCATGGCCTCCGATA 59.375 52.381 6.96 0.00 0.00 2.92
757 2220 2.766313 AGTACATCAAGCAGCACGAAA 58.234 42.857 0.00 0.00 0.00 3.46
770 2233 1.004292 GCACGAAACGTAAAGCAGTGT 60.004 47.619 0.00 0.00 38.32 3.55
813 2300 1.823976 GAGACCCCAACCGATCTCC 59.176 63.158 0.00 0.00 32.97 3.71
816 2303 2.690881 CCCCAACCGATCTCCCCA 60.691 66.667 0.00 0.00 0.00 4.96
946 3291 5.892119 AGAATCCAAAATCATCACAGCAGAT 59.108 36.000 0.00 0.00 0.00 2.90
994 3386 5.501156 AGAGAGAGAAAGAGGAGAAGAGAC 58.499 45.833 0.00 0.00 0.00 3.36
1132 3534 3.000819 CCCGTACAGCACCCAGGA 61.001 66.667 0.00 0.00 0.00 3.86
1199 3613 1.556911 GTCATCCCCAGCTTCTTCTCA 59.443 52.381 0.00 0.00 0.00 3.27
1216 3630 1.153168 CACAGGGTATGCTTCCCCG 60.153 63.158 7.59 1.54 46.17 5.73
1222 3653 1.523938 GTATGCTTCCCCGCCTGTC 60.524 63.158 0.00 0.00 0.00 3.51
1223 3654 1.689233 TATGCTTCCCCGCCTGTCT 60.689 57.895 0.00 0.00 0.00 3.41
1247 3678 0.563857 CCGTTTGTTTGCGTTCGTTG 59.436 50.000 0.00 0.00 0.00 4.10
1256 3694 1.647346 TGCGTTCGTTGTGAAGTCTT 58.353 45.000 0.00 0.00 37.23 3.01
1258 3696 2.029970 TGCGTTCGTTGTGAAGTCTTTC 59.970 45.455 0.00 0.00 37.23 2.62
1261 3699 3.203716 GTTCGTTGTGAAGTCTTTCCCT 58.796 45.455 0.00 0.00 37.23 4.20
1262 3700 2.833794 TCGTTGTGAAGTCTTTCCCTG 58.166 47.619 0.00 0.00 32.09 4.45
1276 3715 3.874383 TTCCCTGGTGAGTCAAATCAA 57.126 42.857 0.00 0.00 0.00 2.57
1304 3743 0.884704 TCTGCTTTTGGTGTCCTCGC 60.885 55.000 0.00 0.00 0.00 5.03
1820 4775 1.338105 TGAGAGACGCCTTGTTGATGG 60.338 52.381 0.00 0.00 0.00 3.51
1867 4824 2.032377 TGTTTTGCTTCGTTGATCGTCC 60.032 45.455 0.00 0.00 40.80 4.79
1957 4995 7.287512 TGGTCATGAAATTCTGTTGATTTCA 57.712 32.000 12.85 12.85 44.93 2.69
2012 5050 4.925646 GCTGAAATTGGTCATGAAACCTTC 59.074 41.667 0.00 0.00 40.20 3.46
2035 5073 6.411376 TCTTGATCTCCTTAATTTTGGCGTA 58.589 36.000 0.00 0.00 0.00 4.42
2038 5076 6.880484 TGATCTCCTTAATTTTGGCGTACTA 58.120 36.000 0.00 0.00 0.00 1.82
2041 5079 6.570692 TCTCCTTAATTTTGGCGTACTAGAG 58.429 40.000 0.00 0.00 0.00 2.43
2044 5082 7.486647 TCCTTAATTTTGGCGTACTAGAGTAG 58.513 38.462 0.00 0.00 0.00 2.57
2045 5083 6.200475 CCTTAATTTTGGCGTACTAGAGTAGC 59.800 42.308 0.00 0.00 0.00 3.58
2046 5084 5.340439 AATTTTGGCGTACTAGAGTAGCT 57.660 39.130 0.00 0.00 0.00 3.32
2047 5085 4.796038 TTTTGGCGTACTAGAGTAGCTT 57.204 40.909 0.00 0.00 0.00 3.74
2048 5086 3.777465 TTGGCGTACTAGAGTAGCTTG 57.223 47.619 0.00 0.00 0.00 4.01
2049 5087 2.022195 TGGCGTACTAGAGTAGCTTGG 58.978 52.381 0.00 0.00 0.00 3.61
2050 5088 2.022934 GGCGTACTAGAGTAGCTTGGT 58.977 52.381 0.00 0.00 0.00 3.67
2051 5089 2.223525 GGCGTACTAGAGTAGCTTGGTG 60.224 54.545 0.00 0.00 0.00 4.17
2052 5090 2.681848 GCGTACTAGAGTAGCTTGGTGA 59.318 50.000 0.00 0.00 0.00 4.02
2053 5091 3.128242 GCGTACTAGAGTAGCTTGGTGAA 59.872 47.826 0.00 0.00 0.00 3.18
2054 5092 4.380233 GCGTACTAGAGTAGCTTGGTGAAA 60.380 45.833 0.00 0.00 0.00 2.69
2055 5093 5.094134 CGTACTAGAGTAGCTTGGTGAAAC 58.906 45.833 0.00 0.00 0.00 2.78
2056 5094 5.106237 CGTACTAGAGTAGCTTGGTGAAACT 60.106 44.000 0.00 0.00 36.74 2.66
2057 5095 5.140747 ACTAGAGTAGCTTGGTGAAACTG 57.859 43.478 0.00 0.00 36.74 3.16
2362 6798 4.938226 GGTCTGATCTCCTCGAATTTTGTT 59.062 41.667 0.00 0.00 0.00 2.83
2396 6832 7.430211 CCTTGAGTTTAACTTCGTGTAAAAACC 59.570 37.037 0.00 8.91 36.30 3.27
2446 6888 0.176910 TCTTGCGTGGACTGTCACAA 59.823 50.000 10.38 7.26 37.50 3.33
2447 6889 1.202639 TCTTGCGTGGACTGTCACAAT 60.203 47.619 10.38 0.00 37.50 2.71
2448 6890 0.943673 TTGCGTGGACTGTCACAATG 59.056 50.000 10.38 1.63 37.50 2.82
2490 6932 2.037121 TGTCCTGCTTCGTTGATCTTCA 59.963 45.455 0.00 0.00 0.00 3.02
2494 6936 3.438087 CCTGCTTCGTTGATCTTCACAAT 59.562 43.478 0.00 0.00 0.00 2.71
2495 6937 4.400845 CTGCTTCGTTGATCTTCACAATG 58.599 43.478 0.00 0.00 36.12 2.82
2496 6938 3.189080 TGCTTCGTTGATCTTCACAATGG 59.811 43.478 0.00 0.00 35.68 3.16
2497 6939 3.436704 GCTTCGTTGATCTTCACAATGGA 59.563 43.478 0.00 0.00 35.68 3.41
2498 6940 4.095483 GCTTCGTTGATCTTCACAATGGAT 59.905 41.667 0.00 0.00 35.68 3.41
2500 6942 6.510799 GCTTCGTTGATCTTCACAATGGATAG 60.511 42.308 0.00 0.00 35.68 2.08
2502 6944 4.512944 CGTTGATCTTCACAATGGATAGGG 59.487 45.833 0.00 0.00 32.62 3.53
2503 6945 4.090761 TGATCTTCACAATGGATAGGGC 57.909 45.455 0.00 0.00 0.00 5.19
2504 6946 3.718434 TGATCTTCACAATGGATAGGGCT 59.282 43.478 0.00 0.00 0.00 5.19
2506 6948 2.439507 TCTTCACAATGGATAGGGCTCC 59.560 50.000 0.00 0.00 35.74 4.70
2533 6989 6.208599 TCCCTGAATGTTTTGTGTTTATCCTC 59.791 38.462 0.00 0.00 0.00 3.71
2540 7001 7.867305 TGTTTTGTGTTTATCCTCTGTGTTA 57.133 32.000 0.00 0.00 0.00 2.41
2550 7011 8.496751 GTTTATCCTCTGTGTTAACTTCTTGAC 58.503 37.037 7.22 0.00 0.00 3.18
2575 7037 7.499232 ACATTATCAACTATACTTTGGTGGAGC 59.501 37.037 0.00 0.00 0.00 4.70
2606 7075 5.532406 TCCTGAACTCTGTTGATTTTCCAAG 59.468 40.000 0.00 0.00 0.00 3.61
2674 10370 9.179552 TCATTAAACTTTGTTGAATCGTCATTG 57.820 29.630 0.00 0.00 32.48 2.82
2714 10410 3.731652 TTTTTCATGTGAGGCCAACAG 57.268 42.857 15.56 8.81 0.00 3.16
2719 10415 2.165167 CATGTGAGGCCAACAGTTGAT 58.835 47.619 15.36 0.06 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.990526 AGACCATGTAAATGGGATGGATC 58.009 43.478 16.64 3.56 45.84 3.36
4 5 4.229353 TCAAGACCATGTAAATGGGATGGA 59.771 41.667 16.64 4.42 45.84 3.41
5 6 4.535781 TCAAGACCATGTAAATGGGATGG 58.464 43.478 16.64 2.04 45.84 3.51
6 7 6.461927 CCAATCAAGACCATGTAAATGGGATG 60.462 42.308 16.64 11.30 45.84 3.51
7 8 5.599656 CCAATCAAGACCATGTAAATGGGAT 59.400 40.000 16.64 6.27 45.84 3.85
8 9 4.955450 CCAATCAAGACCATGTAAATGGGA 59.045 41.667 16.64 4.10 45.84 4.37
9 10 4.955450 TCCAATCAAGACCATGTAAATGGG 59.045 41.667 16.64 0.00 45.84 4.00
10 11 6.153340 AGTTCCAATCAAGACCATGTAAATGG 59.847 38.462 10.67 10.67 46.92 3.16
11 12 7.031372 CAGTTCCAATCAAGACCATGTAAATG 58.969 38.462 0.00 0.00 0.00 2.32
12 13 6.153340 CCAGTTCCAATCAAGACCATGTAAAT 59.847 38.462 0.00 0.00 0.00 1.40
13 14 5.476599 CCAGTTCCAATCAAGACCATGTAAA 59.523 40.000 0.00 0.00 0.00 2.01
14 15 5.009631 CCAGTTCCAATCAAGACCATGTAA 58.990 41.667 0.00 0.00 0.00 2.41
15 16 4.588899 CCAGTTCCAATCAAGACCATGTA 58.411 43.478 0.00 0.00 0.00 2.29
16 17 3.424703 CCAGTTCCAATCAAGACCATGT 58.575 45.455 0.00 0.00 0.00 3.21
17 18 2.165030 GCCAGTTCCAATCAAGACCATG 59.835 50.000 0.00 0.00 0.00 3.66
18 19 2.225091 TGCCAGTTCCAATCAAGACCAT 60.225 45.455 0.00 0.00 0.00 3.55
19 20 1.144708 TGCCAGTTCCAATCAAGACCA 59.855 47.619 0.00 0.00 0.00 4.02
20 21 1.909700 TGCCAGTTCCAATCAAGACC 58.090 50.000 0.00 0.00 0.00 3.85
21 22 2.029918 GGTTGCCAGTTCCAATCAAGAC 60.030 50.000 0.00 0.00 0.00 3.01
22 23 2.238521 GGTTGCCAGTTCCAATCAAGA 58.761 47.619 0.00 0.00 0.00 3.02
23 24 1.273327 GGGTTGCCAGTTCCAATCAAG 59.727 52.381 0.00 0.00 0.00 3.02
24 25 1.337118 GGGTTGCCAGTTCCAATCAA 58.663 50.000 0.00 0.00 0.00 2.57
25 26 0.187117 TGGGTTGCCAGTTCCAATCA 59.813 50.000 0.00 0.00 0.00 2.57
26 27 1.205417 CATGGGTTGCCAGTTCCAATC 59.795 52.381 0.00 0.00 32.56 2.67
27 28 1.269012 CATGGGTTGCCAGTTCCAAT 58.731 50.000 0.00 0.00 32.56 3.16
28 29 0.831288 CCATGGGTTGCCAGTTCCAA 60.831 55.000 2.85 0.00 32.56 3.53
29 30 1.228831 CCATGGGTTGCCAGTTCCA 60.229 57.895 2.85 0.00 0.00 3.53
30 31 0.324645 ATCCATGGGTTGCCAGTTCC 60.325 55.000 13.02 0.00 0.00 3.62
31 32 1.560505 AATCCATGGGTTGCCAGTTC 58.439 50.000 10.19 0.00 0.00 3.01
32 33 1.624813 CAAATCCATGGGTTGCCAGTT 59.375 47.619 12.04 0.00 0.00 3.16
33 34 1.269012 CAAATCCATGGGTTGCCAGT 58.731 50.000 12.04 0.00 0.00 4.00
34 35 0.108041 GCAAATCCATGGGTTGCCAG 60.108 55.000 29.53 15.53 41.41 4.85
35 36 0.835115 TGCAAATCCATGGGTTGCCA 60.835 50.000 33.14 24.09 45.60 4.92
36 37 0.391528 GTGCAAATCCATGGGTTGCC 60.392 55.000 33.14 25.26 45.60 4.52
37 38 0.391528 GGTGCAAATCCATGGGTTGC 60.392 55.000 31.41 31.41 46.21 4.17
38 39 0.249955 GGGTGCAAATCCATGGGTTG 59.750 55.000 12.04 16.69 0.00 3.77
39 40 0.178909 TGGGTGCAAATCCATGGGTT 60.179 50.000 13.02 8.57 0.00 4.11
40 41 0.178909 TTGGGTGCAAATCCATGGGT 60.179 50.000 13.02 0.00 32.48 4.51
41 42 0.982704 TTTGGGTGCAAATCCATGGG 59.017 50.000 13.02 0.00 32.48 4.00
42 43 3.054948 AGAATTTGGGTGCAAATCCATGG 60.055 43.478 4.97 4.97 34.06 3.66
43 44 4.210724 AGAATTTGGGTGCAAATCCATG 57.789 40.909 5.66 0.00 34.06 3.66
44 45 6.371595 TTTAGAATTTGGGTGCAAATCCAT 57.628 33.333 5.66 0.00 34.06 3.41
45 46 5.815233 TTTAGAATTTGGGTGCAAATCCA 57.185 34.783 0.00 0.00 34.06 3.41
46 47 6.463360 TCTTTTAGAATTTGGGTGCAAATCC 58.537 36.000 0.00 0.00 34.06 3.01
47 48 7.961325 TTCTTTTAGAATTTGGGTGCAAATC 57.039 32.000 0.00 0.00 34.06 2.17
48 49 7.607607 GGATTCTTTTAGAATTTGGGTGCAAAT 59.392 33.333 3.64 0.00 44.41 2.32
49 50 6.934083 GGATTCTTTTAGAATTTGGGTGCAAA 59.066 34.615 3.64 0.00 44.41 3.68
50 51 6.042552 TGGATTCTTTTAGAATTTGGGTGCAA 59.957 34.615 3.64 0.00 44.41 4.08
51 52 5.541868 TGGATTCTTTTAGAATTTGGGTGCA 59.458 36.000 3.64 0.00 44.41 4.57
52 53 6.036577 TGGATTCTTTTAGAATTTGGGTGC 57.963 37.500 3.64 0.00 44.41 5.01
53 54 6.351286 CCCTGGATTCTTTTAGAATTTGGGTG 60.351 42.308 17.58 7.55 44.41 4.61
54 55 5.721480 CCCTGGATTCTTTTAGAATTTGGGT 59.279 40.000 17.58 0.00 44.41 4.51
55 56 5.129320 CCCCTGGATTCTTTTAGAATTTGGG 59.871 44.000 18.23 18.23 44.41 4.12
56 57 5.957774 TCCCCTGGATTCTTTTAGAATTTGG 59.042 40.000 0.00 6.42 44.41 3.28
57 58 7.039082 TGTTCCCCTGGATTCTTTTAGAATTTG 60.039 37.037 0.00 0.00 44.41 2.32
58 59 7.016296 TGTTCCCCTGGATTCTTTTAGAATTT 58.984 34.615 0.00 0.00 44.41 1.82
59 60 6.561294 TGTTCCCCTGGATTCTTTTAGAATT 58.439 36.000 0.00 0.00 44.41 2.17
60 61 6.152638 TGTTCCCCTGGATTCTTTTAGAAT 57.847 37.500 0.00 1.73 46.84 2.40
61 62 5.592587 TGTTCCCCTGGATTCTTTTAGAA 57.407 39.130 0.00 0.00 38.78 2.10
62 63 5.340027 GGATGTTCCCCTGGATTCTTTTAGA 60.340 44.000 0.00 0.00 0.00 2.10
63 64 4.889995 GGATGTTCCCCTGGATTCTTTTAG 59.110 45.833 0.00 0.00 0.00 1.85
64 65 4.293634 TGGATGTTCCCCTGGATTCTTTTA 59.706 41.667 0.00 0.00 35.03 1.52
65 66 3.077391 TGGATGTTCCCCTGGATTCTTTT 59.923 43.478 0.00 0.00 35.03 2.27
66 67 2.654385 TGGATGTTCCCCTGGATTCTTT 59.346 45.455 0.00 0.00 35.03 2.52
67 68 2.024941 GTGGATGTTCCCCTGGATTCTT 60.025 50.000 0.00 0.00 35.03 2.52
68 69 1.566231 GTGGATGTTCCCCTGGATTCT 59.434 52.381 0.00 0.00 35.03 2.40
69 70 1.747206 CGTGGATGTTCCCCTGGATTC 60.747 57.143 0.00 0.00 35.03 2.52
70 71 0.255890 CGTGGATGTTCCCCTGGATT 59.744 55.000 0.00 0.00 35.03 3.01
71 72 1.635817 CCGTGGATGTTCCCCTGGAT 61.636 60.000 0.00 0.00 35.03 3.41
72 73 2.297895 CCGTGGATGTTCCCCTGGA 61.298 63.158 0.00 0.00 35.03 3.86
73 74 2.272146 CCGTGGATGTTCCCCTGG 59.728 66.667 0.00 0.00 35.03 4.45
74 75 2.272146 CCCGTGGATGTTCCCCTG 59.728 66.667 0.00 0.00 35.03 4.45
75 76 3.015145 CCCCGTGGATGTTCCCCT 61.015 66.667 0.00 0.00 35.03 4.79
76 77 3.335729 ACCCCGTGGATGTTCCCC 61.336 66.667 0.00 0.00 35.03 4.81
77 78 2.271173 GACCCCGTGGATGTTCCC 59.729 66.667 0.00 0.00 35.03 3.97
78 79 1.376812 GTGACCCCGTGGATGTTCC 60.377 63.158 0.00 0.00 36.96 3.62
79 80 1.376812 GGTGACCCCGTGGATGTTC 60.377 63.158 0.00 0.00 34.81 3.18
80 81 2.150719 TGGTGACCCCGTGGATGTT 61.151 57.895 0.00 0.00 35.15 2.71
81 82 2.528127 TGGTGACCCCGTGGATGT 60.528 61.111 0.00 0.00 35.15 3.06
82 83 2.046314 GTGGTGACCCCGTGGATG 60.046 66.667 0.00 0.00 35.15 3.51
83 84 3.327404 GGTGGTGACCCCGTGGAT 61.327 66.667 0.00 0.00 36.03 3.41
84 85 4.567597 AGGTGGTGACCCCGTGGA 62.568 66.667 0.00 0.00 44.40 4.02
85 86 4.016706 GAGGTGGTGACCCCGTGG 62.017 72.222 0.00 0.00 44.40 4.94
86 87 4.016706 GGAGGTGGTGACCCCGTG 62.017 72.222 0.00 0.00 44.40 4.94
87 88 3.864983 ATGGAGGTGGTGACCCCGT 62.865 63.158 0.00 0.00 44.40 5.28
88 89 3.009115 ATGGAGGTGGTGACCCCG 61.009 66.667 0.00 0.00 44.40 5.73
89 90 1.497309 TTGATGGAGGTGGTGACCCC 61.497 60.000 0.00 0.00 44.40 4.95
90 91 0.404040 TTTGATGGAGGTGGTGACCC 59.596 55.000 0.00 0.00 44.40 4.46
91 92 1.534729 GTTTGATGGAGGTGGTGACC 58.465 55.000 0.00 0.00 43.52 4.02
92 93 1.156736 CGTTTGATGGAGGTGGTGAC 58.843 55.000 0.00 0.00 0.00 3.67
93 94 0.605319 GCGTTTGATGGAGGTGGTGA 60.605 55.000 0.00 0.00 0.00 4.02
94 95 1.586154 GGCGTTTGATGGAGGTGGTG 61.586 60.000 0.00 0.00 0.00 4.17
95 96 1.303317 GGCGTTTGATGGAGGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
96 97 2.398554 CGGCGTTTGATGGAGGTGG 61.399 63.158 0.00 0.00 0.00 4.61
97 98 3.039202 GCGGCGTTTGATGGAGGTG 62.039 63.158 9.37 0.00 0.00 4.00
98 99 2.746277 GCGGCGTTTGATGGAGGT 60.746 61.111 9.37 0.00 0.00 3.85
99 100 3.864686 CGCGGCGTTTGATGGAGG 61.865 66.667 15.36 0.00 0.00 4.30
100 101 2.802667 CTCGCGGCGTTTGATGGAG 61.803 63.158 22.90 5.65 0.00 3.86
101 102 2.813474 CTCGCGGCGTTTGATGGA 60.813 61.111 22.90 0.00 0.00 3.41
102 103 4.520846 GCTCGCGGCGTTTGATGG 62.521 66.667 22.90 6.23 0.00 3.51
103 104 3.707156 CTGCTCGCGGCGTTTGATG 62.707 63.158 22.90 7.87 45.43 3.07
104 105 3.490759 CTGCTCGCGGCGTTTGAT 61.491 61.111 22.90 0.00 45.43 2.57
107 108 4.760047 ATCCTGCTCGCGGCGTTT 62.760 61.111 22.90 0.00 45.43 3.60
111 112 4.819761 TGTCATCCTGCTCGCGGC 62.820 66.667 6.13 9.69 42.22 6.53
112 113 1.953138 GATGTCATCCTGCTCGCGG 60.953 63.158 6.13 0.00 0.00 6.46
113 114 0.599466 ATGATGTCATCCTGCTCGCG 60.599 55.000 10.36 0.00 28.78 5.87
114 115 1.590932 AATGATGTCATCCTGCTCGC 58.409 50.000 10.36 0.00 35.10 5.03
115 116 3.247886 CAGAAATGATGTCATCCTGCTCG 59.752 47.826 10.36 0.00 35.10 5.03
116 117 4.197750 ACAGAAATGATGTCATCCTGCTC 58.802 43.478 10.36 2.49 35.10 4.26
117 118 4.232188 ACAGAAATGATGTCATCCTGCT 57.768 40.909 10.36 0.00 35.10 4.24
118 119 5.007430 CACTACAGAAATGATGTCATCCTGC 59.993 44.000 10.36 0.00 35.10 4.85
119 120 5.007430 GCACTACAGAAATGATGTCATCCTG 59.993 44.000 10.36 11.69 35.10 3.86
120 121 5.121811 GCACTACAGAAATGATGTCATCCT 58.878 41.667 10.36 0.00 35.10 3.24
121 122 4.274459 GGCACTACAGAAATGATGTCATCC 59.726 45.833 10.36 0.00 35.10 3.51
122 123 4.877823 TGGCACTACAGAAATGATGTCATC 59.122 41.667 5.83 5.83 35.10 2.92
123 124 4.847198 TGGCACTACAGAAATGATGTCAT 58.153 39.130 0.00 0.00 38.41 3.06
124 125 4.284829 TGGCACTACAGAAATGATGTCA 57.715 40.909 0.00 0.00 32.02 3.58
125 126 4.036027 CCATGGCACTACAGAAATGATGTC 59.964 45.833 0.00 0.00 32.02 3.06
126 127 3.949754 CCATGGCACTACAGAAATGATGT 59.050 43.478 0.00 0.00 34.62 3.06
127 128 3.949754 ACCATGGCACTACAGAAATGATG 59.050 43.478 13.04 0.00 0.00 3.07
128 129 4.202441 GACCATGGCACTACAGAAATGAT 58.798 43.478 13.04 0.00 0.00 2.45
129 130 3.609853 GACCATGGCACTACAGAAATGA 58.390 45.455 13.04 0.00 0.00 2.57
130 131 2.684881 GGACCATGGCACTACAGAAATG 59.315 50.000 13.04 0.00 0.00 2.32
131 132 2.578021 AGGACCATGGCACTACAGAAAT 59.422 45.455 13.04 0.00 0.00 2.17
132 133 1.985159 AGGACCATGGCACTACAGAAA 59.015 47.619 13.04 0.00 0.00 2.52
133 134 1.278985 CAGGACCATGGCACTACAGAA 59.721 52.381 13.04 0.00 0.00 3.02
134 135 0.904649 CAGGACCATGGCACTACAGA 59.095 55.000 13.04 0.00 0.00 3.41
135 136 0.745845 GCAGGACCATGGCACTACAG 60.746 60.000 13.04 0.00 0.00 2.74
136 137 1.200760 AGCAGGACCATGGCACTACA 61.201 55.000 13.04 0.00 0.00 2.74
137 138 0.035056 AAGCAGGACCATGGCACTAC 60.035 55.000 13.04 4.96 0.00 2.73
138 139 0.035152 CAAGCAGGACCATGGCACTA 60.035 55.000 13.04 0.00 0.00 2.74
139 140 1.303888 CAAGCAGGACCATGGCACT 60.304 57.895 13.04 7.38 0.00 4.40
140 141 2.998279 GCAAGCAGGACCATGGCAC 61.998 63.158 13.04 4.69 0.00 5.01
141 142 2.677524 GCAAGCAGGACCATGGCA 60.678 61.111 13.04 0.00 0.00 4.92
142 143 2.677524 TGCAAGCAGGACCATGGC 60.678 61.111 13.04 4.47 0.00 4.40
143 144 3.599584 CTGCAAGCAGGACCATGG 58.400 61.111 11.19 11.19 40.17 3.66
152 153 1.298157 GGCGTCATGTACTGCAAGCA 61.298 55.000 0.00 0.00 37.60 3.91
153 154 1.425428 GGCGTCATGTACTGCAAGC 59.575 57.895 0.00 0.00 37.60 4.01
154 155 1.695893 CCGGCGTCATGTACTGCAAG 61.696 60.000 6.01 0.00 42.29 4.01
155 156 1.739929 CCGGCGTCATGTACTGCAA 60.740 57.895 6.01 0.00 31.80 4.08
156 157 2.125713 CCGGCGTCATGTACTGCA 60.126 61.111 6.01 0.00 31.80 4.41
157 158 2.125673 ACCGGCGTCATGTACTGC 60.126 61.111 6.01 0.00 0.00 4.40
158 159 0.525668 GAGACCGGCGTCATGTACTG 60.526 60.000 6.01 0.00 41.87 2.74
159 160 1.664321 GGAGACCGGCGTCATGTACT 61.664 60.000 6.01 0.00 41.87 2.73
160 161 1.226888 GGAGACCGGCGTCATGTAC 60.227 63.158 6.01 0.00 41.87 2.90
161 162 2.420568 GGGAGACCGGCGTCATGTA 61.421 63.158 6.01 0.00 43.64 2.29
162 163 3.771160 GGGAGACCGGCGTCATGT 61.771 66.667 6.01 0.00 43.64 3.21
173 174 0.753848 CCTTCTCGGAGGAGGGAGAC 60.754 65.000 22.79 0.00 38.92 3.36
174 175 1.215679 ACCTTCTCGGAGGAGGGAGA 61.216 60.000 31.21 0.00 40.85 3.71
175 176 1.040339 CACCTTCTCGGAGGAGGGAG 61.040 65.000 31.21 21.06 40.85 4.30
176 177 1.000486 CACCTTCTCGGAGGAGGGA 60.000 63.158 31.21 0.00 40.85 4.20
177 178 0.397816 ATCACCTTCTCGGAGGAGGG 60.398 60.000 31.21 21.27 40.85 4.30
178 179 0.749649 CATCACCTTCTCGGAGGAGG 59.250 60.000 27.60 27.60 40.85 4.30
179 180 1.407258 GTCATCACCTTCTCGGAGGAG 59.593 57.143 6.31 6.31 39.25 3.69
180 181 1.475403 GTCATCACCTTCTCGGAGGA 58.525 55.000 4.96 0.00 39.25 3.71
181 182 0.101399 CGTCATCACCTTCTCGGAGG 59.899 60.000 4.96 0.00 42.75 4.30
182 183 1.095600 TCGTCATCACCTTCTCGGAG 58.904 55.000 0.00 0.00 36.31 4.63
183 184 1.201647 GTTCGTCATCACCTTCTCGGA 59.798 52.381 0.00 0.00 36.31 4.55
184 185 1.630148 GTTCGTCATCACCTTCTCGG 58.370 55.000 0.00 0.00 39.35 4.63
185 186 1.630148 GGTTCGTCATCACCTTCTCG 58.370 55.000 0.00 0.00 0.00 4.04
186 187 1.405661 GGGGTTCGTCATCACCTTCTC 60.406 57.143 0.00 0.00 33.09 2.87
187 188 0.613777 GGGGTTCGTCATCACCTTCT 59.386 55.000 0.00 0.00 33.09 2.85
188 189 0.392595 GGGGGTTCGTCATCACCTTC 60.393 60.000 0.00 0.00 33.09 3.46
189 190 1.683441 GGGGGTTCGTCATCACCTT 59.317 57.895 0.00 0.00 33.09 3.50
190 191 3.400188 GGGGGTTCGTCATCACCT 58.600 61.111 0.00 0.00 33.09 4.00
204 205 3.084786 GAGTCAAAAGTGAAGATGGGGG 58.915 50.000 0.00 0.00 34.87 5.40
205 206 2.744202 CGAGTCAAAAGTGAAGATGGGG 59.256 50.000 0.00 0.00 34.87 4.96
206 207 2.160417 GCGAGTCAAAAGTGAAGATGGG 59.840 50.000 0.00 0.00 34.87 4.00
207 208 2.160417 GGCGAGTCAAAAGTGAAGATGG 59.840 50.000 0.00 0.00 34.87 3.51
208 209 2.159787 CGGCGAGTCAAAAGTGAAGATG 60.160 50.000 0.00 0.00 34.87 2.90
209 210 2.069273 CGGCGAGTCAAAAGTGAAGAT 58.931 47.619 0.00 0.00 34.87 2.40
210 211 1.497991 CGGCGAGTCAAAAGTGAAGA 58.502 50.000 0.00 0.00 34.87 2.87
211 212 0.110644 GCGGCGAGTCAAAAGTGAAG 60.111 55.000 12.98 0.00 34.87 3.02
212 213 1.827315 CGCGGCGAGTCAAAAGTGAA 61.827 55.000 19.16 0.00 34.87 3.18
213 214 2.307309 CGCGGCGAGTCAAAAGTGA 61.307 57.895 19.16 0.00 0.00 3.41
214 215 2.170985 CGCGGCGAGTCAAAAGTG 59.829 61.111 19.16 0.00 0.00 3.16
215 216 3.712881 GCGCGGCGAGTCAAAAGT 61.713 61.111 28.54 0.00 0.00 2.66
216 217 3.635734 CTGCGCGGCGAGTCAAAAG 62.636 63.158 28.54 6.96 0.00 2.27
217 218 3.711842 CTGCGCGGCGAGTCAAAA 61.712 61.111 28.54 0.60 0.00 2.44
235 236 3.142838 CTGAAAGGGCCATGGCGG 61.143 66.667 29.90 4.89 43.06 6.13
236 237 3.830192 GCTGAAAGGGCCATGGCG 61.830 66.667 29.90 15.43 43.06 5.69
237 238 2.363406 AGCTGAAAGGGCCATGGC 60.363 61.111 29.47 29.47 41.06 4.40
238 239 2.117156 CGAGCTGAAAGGGCCATGG 61.117 63.158 7.63 7.63 0.00 3.66
239 240 0.962356 AACGAGCTGAAAGGGCCATG 60.962 55.000 6.18 0.00 0.00 3.66
240 241 0.962356 CAACGAGCTGAAAGGGCCAT 60.962 55.000 6.18 0.00 0.00 4.40
241 242 1.600636 CAACGAGCTGAAAGGGCCA 60.601 57.895 6.18 0.00 0.00 5.36
242 243 1.302511 TCAACGAGCTGAAAGGGCC 60.303 57.895 0.00 0.00 0.00 5.80
243 244 1.869690 GTCAACGAGCTGAAAGGGC 59.130 57.895 0.00 0.00 0.00 5.19
244 245 0.319555 TCGTCAACGAGCTGAAAGGG 60.320 55.000 0.22 0.00 44.22 3.95
245 246 3.195041 TCGTCAACGAGCTGAAAGG 57.805 52.632 0.22 0.00 44.22 3.11
269 270 2.000701 CCATACCTGGCTGACCCCA 61.001 63.158 0.00 0.00 35.23 4.96
270 271 2.919043 CCATACCTGGCTGACCCC 59.081 66.667 0.00 0.00 35.23 4.95
275 276 6.148278 AGGTACTTTCACCATACCTGGCTG 62.148 50.000 1.40 0.00 45.64 4.85
276 277 4.082486 AGGTACTTTCACCATACCTGGCT 61.082 47.826 1.40 0.00 45.64 4.75
277 278 2.238898 AGGTACTTTCACCATACCTGGC 59.761 50.000 1.40 0.00 45.64 4.85
287 288 1.418637 TGGTGGGTGAGGTACTTTCAC 59.581 52.381 17.36 17.36 41.55 3.18
288 289 1.418637 GTGGTGGGTGAGGTACTTTCA 59.581 52.381 0.00 0.00 41.55 2.69
289 290 1.271217 GGTGGTGGGTGAGGTACTTTC 60.271 57.143 0.00 0.00 41.55 2.62
290 291 0.769247 GGTGGTGGGTGAGGTACTTT 59.231 55.000 0.00 0.00 41.55 2.66
291 292 0.104620 AGGTGGTGGGTGAGGTACTT 60.105 55.000 0.00 0.00 41.55 2.24
293 294 1.677552 CAGGTGGTGGGTGAGGTAC 59.322 63.158 0.00 0.00 0.00 3.34
294 295 2.221299 GCAGGTGGTGGGTGAGGTA 61.221 63.158 0.00 0.00 0.00 3.08
295 296 3.570212 GCAGGTGGTGGGTGAGGT 61.570 66.667 0.00 0.00 0.00 3.85
296 297 2.833913 AAGCAGGTGGTGGGTGAGG 61.834 63.158 0.00 0.00 0.00 3.86
297 298 1.601759 CAAGCAGGTGGTGGGTGAG 60.602 63.158 0.00 0.00 0.00 3.51
298 299 2.515398 CAAGCAGGTGGTGGGTGA 59.485 61.111 0.00 0.00 0.00 4.02
299 300 3.297620 GCAAGCAGGTGGTGGGTG 61.298 66.667 0.00 0.00 0.00 4.61
300 301 4.603535 GGCAAGCAGGTGGTGGGT 62.604 66.667 0.00 0.00 0.00 4.51
303 304 3.925630 ATCGGGCAAGCAGGTGGTG 62.926 63.158 0.00 0.00 0.00 4.17
304 305 3.650950 ATCGGGCAAGCAGGTGGT 61.651 61.111 0.00 0.00 0.00 4.16
305 306 3.136123 CATCGGGCAAGCAGGTGG 61.136 66.667 0.00 0.00 0.00 4.61
306 307 3.136123 CCATCGGGCAAGCAGGTG 61.136 66.667 0.00 0.00 0.00 4.00
464 656 7.647318 TCACATGTACACATTGTGAAAATTCAC 59.353 33.333 22.41 17.28 44.87 3.18
487 679 5.464965 TCTTGAGAACGAAAAACAGTCAC 57.535 39.130 0.00 0.00 0.00 3.67
490 682 6.751888 CCATTTTCTTGAGAACGAAAAACAGT 59.248 34.615 0.00 0.00 41.00 3.55
492 684 6.529829 CACCATTTTCTTGAGAACGAAAAACA 59.470 34.615 0.00 0.00 41.00 2.83
493 685 6.530181 ACACCATTTTCTTGAGAACGAAAAAC 59.470 34.615 0.00 0.00 41.00 2.43
651 2056 2.541762 GCTCTATGTCGAGTGATTTGCC 59.458 50.000 0.00 0.00 33.55 4.52
698 2154 6.899089 TGGATGAAGGTAATTATTGAGCTGA 58.101 36.000 0.00 0.00 0.00 4.26
702 2158 6.071728 GGCCATGGATGAAGGTAATTATTGAG 60.072 42.308 18.40 0.00 0.00 3.02
734 2197 2.492088 TCGTGCTGCTTGATGTACTACT 59.508 45.455 0.00 0.00 0.00 2.57
757 2220 1.604693 CGGGAGAACACTGCTTTACGT 60.605 52.381 0.00 0.00 0.00 3.57
770 2233 3.276281 TCCAGAACGATCGGGAGAA 57.724 52.632 20.98 0.00 43.83 2.87
813 2300 3.518992 TTGGGTTTAGAAGGTTCTGGG 57.481 47.619 2.32 0.00 38.19 4.45
816 2303 4.767409 GCTGAATTGGGTTTAGAAGGTTCT 59.233 41.667 0.00 0.00 41.24 3.01
904 2423 0.108898 CTTGTGGTGAGCGAGAGAGG 60.109 60.000 0.00 0.00 0.00 3.69
946 3291 5.729229 TCTTTCCCTCTCTTCTCTCTCTCTA 59.271 44.000 0.00 0.00 0.00 2.43
1123 3519 2.352805 CCTCCTTGTCCTGGGTGC 59.647 66.667 0.00 0.00 0.00 5.01
1132 3534 4.021925 GGCGGCTGACCTCCTTGT 62.022 66.667 0.00 0.00 37.88 3.16
1199 3613 3.320359 CGGGGAAGCATACCCTGT 58.680 61.111 7.84 0.00 45.91 4.00
1222 3653 2.915458 CGCAAACAAACGGCGCAAG 61.915 57.895 10.83 4.90 44.49 4.01
1223 3654 2.951745 CGCAAACAAACGGCGCAA 60.952 55.556 10.83 0.00 44.49 4.85
1247 3678 2.104963 ACTCACCAGGGAAAGACTTCAC 59.895 50.000 0.00 0.00 34.93 3.18
1256 3694 3.486383 GTTGATTTGACTCACCAGGGAA 58.514 45.455 0.00 0.00 0.00 3.97
1258 3696 2.162681 GGTTGATTTGACTCACCAGGG 58.837 52.381 0.00 0.00 0.00 4.45
1261 3699 4.136796 CAGAAGGTTGATTTGACTCACCA 58.863 43.478 0.00 0.00 0.00 4.17
1262 3700 4.389374 TCAGAAGGTTGATTTGACTCACC 58.611 43.478 0.00 0.00 0.00 4.02
1276 3715 3.152341 CACCAAAAGCAGATCAGAAGGT 58.848 45.455 0.00 0.00 0.00 3.50
1304 3743 1.136141 GCACGTCTGCAGAATCAACAG 60.136 52.381 20.19 5.64 43.62 3.16
1350 3789 1.676678 GAGACAGCAGACGGGCCATA 61.677 60.000 4.39 0.00 0.00 2.74
1796 4744 0.753262 AACAAGGCGTCTCTCACACT 59.247 50.000 0.00 0.00 0.00 3.55
1797 4745 0.861837 CAACAAGGCGTCTCTCACAC 59.138 55.000 0.00 0.00 0.00 3.82
1820 4775 3.222603 AGAAAGACACCAAACATGACCC 58.777 45.455 0.00 0.00 0.00 4.46
1867 4824 2.926200 CAACTTCACCTACTCGATGCAG 59.074 50.000 0.00 0.00 0.00 4.41
1957 4995 8.014070 TCAGTTCATCATATGCCAAATTTGAT 57.986 30.769 19.86 8.53 0.00 2.57
2012 5050 5.567138 ACGCCAAAATTAAGGAGATCAAG 57.433 39.130 6.80 0.00 0.00 3.02
2035 5073 4.021016 CCAGTTTCACCAAGCTACTCTAGT 60.021 45.833 0.00 0.00 0.00 2.57
2038 5076 2.706190 ACCAGTTTCACCAAGCTACTCT 59.294 45.455 0.00 0.00 0.00 3.24
2041 5079 2.846193 TGACCAGTTTCACCAAGCTAC 58.154 47.619 0.00 0.00 0.00 3.58
2044 5082 4.278419 AGTTAATGACCAGTTTCACCAAGC 59.722 41.667 0.00 0.00 0.00 4.01
2045 5083 6.391227 AAGTTAATGACCAGTTTCACCAAG 57.609 37.500 0.00 0.00 0.00 3.61
2046 5084 6.783708 AAAGTTAATGACCAGTTTCACCAA 57.216 33.333 0.00 0.00 0.00 3.67
2047 5085 8.356657 CAATAAAGTTAATGACCAGTTTCACCA 58.643 33.333 0.00 0.00 0.00 4.17
2048 5086 8.573035 TCAATAAAGTTAATGACCAGTTTCACC 58.427 33.333 0.00 0.00 0.00 4.02
2362 6798 6.708949 ACGAAGTTAAACTCAAGGATAAGCAA 59.291 34.615 0.00 0.00 37.78 3.91
2446 6888 6.377146 ACATAAAGAAACAAACGCCTATCCAT 59.623 34.615 0.00 0.00 0.00 3.41
2447 6889 5.708230 ACATAAAGAAACAAACGCCTATCCA 59.292 36.000 0.00 0.00 0.00 3.41
2448 6890 6.190954 ACATAAAGAAACAAACGCCTATCC 57.809 37.500 0.00 0.00 0.00 2.59
2490 6932 3.683034 AGGGAGCCCTATCCATTGT 57.317 52.632 6.21 0.00 46.14 2.71
2502 6944 1.821136 CAAAACATTCAGGGAGGGAGC 59.179 52.381 0.00 0.00 0.00 4.70
2503 6945 2.821969 CACAAAACATTCAGGGAGGGAG 59.178 50.000 0.00 0.00 0.00 4.30
2504 6946 2.176798 ACACAAAACATTCAGGGAGGGA 59.823 45.455 0.00 0.00 0.00 4.20
2506 6948 4.670896 AAACACAAAACATTCAGGGAGG 57.329 40.909 0.00 0.00 0.00 4.30
2533 6989 9.599322 GTTGATAATGTCAAGAAGTTAACACAG 57.401 33.333 8.61 0.00 46.99 3.66
2550 7011 7.498900 TGCTCCACCAAAGTATAGTTGATAATG 59.501 37.037 0.00 0.00 0.00 1.90
2575 7037 4.635223 TCAACAGAGTTCAGGATCAACTG 58.365 43.478 1.89 0.00 39.84 3.16
2618 7097 4.065088 TCACCAGCAAAGTAGTTCATCAC 58.935 43.478 0.00 0.00 0.00 3.06
2665 7144 6.818644 AGTGTACTTGCTAATTCAATGACGAT 59.181 34.615 0.00 0.00 0.00 3.73
2694 10390 3.030291 ACTGTTGGCCTCACATGAAAAA 58.970 40.909 3.32 0.00 0.00 1.94
2707 10403 2.222007 TTGTGCAATCAACTGTTGGC 57.778 45.000 19.55 15.23 0.00 4.52
2714 10410 7.130917 TGCATTTTGTTATTTGTGCAATCAAC 58.869 30.769 0.00 0.00 39.36 3.18
2719 10415 8.804743 CATTTTTGCATTTTGTTATTTGTGCAA 58.195 25.926 6.50 6.50 46.87 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.