Multiple sequence alignment - TraesCS7B01G082500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G082500 chr7B 100.000 5522 0 0 1 5522 93434354 93439875 0.000000e+00 10198
1 TraesCS7B01G082500 chr7B 93.827 81 5 0 5430 5510 93439863 93439783 7.510000e-24 122
2 TraesCS7B01G082500 chr7D 93.404 4412 172 63 370 4716 131816813 131821170 0.000000e+00 6425
3 TraesCS7B01G082500 chr7D 93.963 646 33 5 4796 5438 131821167 131821809 0.000000e+00 972
4 TraesCS7B01G082500 chr7D 93.204 103 6 1 4696 4798 220083752 220083651 3.450000e-32 150
5 TraesCS7B01G082500 chr7D 93.204 103 6 1 4696 4798 220096531 220096430 3.450000e-32 150
6 TraesCS7B01G082500 chr7A 92.080 4217 187 56 601 4713 130608863 130613036 0.000000e+00 5801
7 TraesCS7B01G082500 chr7A 92.928 608 25 10 4810 5413 130613042 130613635 0.000000e+00 869
8 TraesCS7B01G082500 chr7A 93.827 81 5 0 5428 5508 310433795 310433875 7.510000e-24 122
9 TraesCS7B01G082500 chr7A 91.566 83 7 0 5428 5510 310433879 310433797 1.260000e-21 115
10 TraesCS7B01G082500 chr7A 88.421 95 5 1 5420 5508 680344057 680343963 5.850000e-20 110
11 TraesCS7B01G082500 chr3D 97.872 94 1 1 4710 4803 141424271 141424363 1.590000e-35 161
12 TraesCS7B01G082500 chr6B 76.106 339 60 9 1 338 135117164 135117482 2.060000e-34 158
13 TraesCS7B01G082500 chr6B 95.000 80 3 1 5432 5510 646277635 646277556 2.090000e-24 124
14 TraesCS7B01G082500 chr6B 93.827 81 4 1 5429 5508 646277555 646277635 2.700000e-23 121
15 TraesCS7B01G082500 chr4A 97.802 91 1 1 4717 4807 179963119 179963030 7.410000e-34 156
16 TraesCS7B01G082500 chr2D 95.876 97 3 1 4712 4807 79051006 79051102 7.410000e-34 156
17 TraesCS7B01G082500 chr5A 94.898 98 5 0 4704 4801 608605230 608605133 2.660000e-33 154
18 TraesCS7B01G082500 chr5A 91.589 107 8 1 4700 4806 25892263 25892368 4.460000e-31 147
19 TraesCS7B01G082500 chr1D 95.789 95 3 1 4712 4806 64325916 64326009 9.580000e-33 152
20 TraesCS7B01G082500 chr1D 90.090 111 8 3 4717 4825 211632417 211632308 2.070000e-29 141
21 TraesCS7B01G082500 chr1D 88.421 95 6 2 5417 5508 487321419 487321511 5.850000e-20 110
22 TraesCS7B01G082500 chr3B 91.566 83 7 0 5431 5513 465505794 465505712 1.260000e-21 115
23 TraesCS7B01G082500 chr3A 92.593 81 4 2 5427 5507 40931866 40931788 1.260000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G082500 chr7B 93434354 93439875 5521 False 10198.0 10198 100.0000 1 5522 1 chr7B.!!$F1 5521
1 TraesCS7B01G082500 chr7D 131816813 131821809 4996 False 3698.5 6425 93.6835 370 5438 2 chr7D.!!$F1 5068
2 TraesCS7B01G082500 chr7A 130608863 130613635 4772 False 3335.0 5801 92.5040 601 5413 2 chr7A.!!$F2 4812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.034896 AAACGTCTCGGAGCCAACAT 59.965 50.000 0.00 0.0 0.00 2.71 F
302 303 0.107848 AATCCAGAGCGGTTTACGGG 60.108 55.000 0.00 0.0 44.51 5.28 F
1587 1694 0.106619 AGTAGAATCTCGCCCGGTCT 60.107 55.000 0.00 0.0 0.00 3.85 F
1845 1953 0.179181 GCATGTGGTGTGCTTGATCG 60.179 55.000 0.00 0.0 39.45 3.69 F
2820 2953 1.268079 GACTGTTTTTGCTCTGAGCCC 59.732 52.381 25.61 9.7 41.51 5.19 F
2836 2969 2.505819 GAGCCCTTCCCTTAACTGATCA 59.494 50.000 0.00 0.0 0.00 2.92 F
4118 4254 2.050144 ACAATCAGTCCTGACAGGTGT 58.950 47.619 21.06 13.6 43.11 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 1675 0.106619 AGACCGGGCGAGATTCTACT 60.107 55.000 6.32 0.00 0.00 2.57 R
2162 2280 0.107643 TGACTGCGACACATTGGGAA 59.892 50.000 0.00 0.00 0.00 3.97 R
3304 3437 1.480954 TCCCGTGATGGACTTTAGAGC 59.519 52.381 0.00 0.00 42.00 4.09 R
3801 3934 3.057315 GGGATTGCAAATCGACCATATGG 60.057 47.826 20.68 20.68 42.17 2.74 R
4039 4175 0.893270 CCGTGCCATGTTCCCAGAAA 60.893 55.000 0.00 0.00 0.00 2.52 R
4153 4290 1.474879 GACCGAGAAGGGAAGAGTGAG 59.525 57.143 0.00 0.00 46.96 3.51 R
5502 5646 0.245813 GTGGTGAACGGGAGTACTCC 59.754 60.000 30.72 30.72 46.69 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.233980 CGATGGGCGGATGGAGGA 61.234 66.667 0.00 0.00 36.03 3.71
28 29 2.746359 GATGGGCGGATGGAGGAG 59.254 66.667 0.00 0.00 0.00 3.69
29 30 3.543536 GATGGGCGGATGGAGGAGC 62.544 68.421 0.00 0.00 0.00 4.70
30 31 4.804420 TGGGCGGATGGAGGAGCT 62.804 66.667 0.00 0.00 0.00 4.09
31 32 3.934962 GGGCGGATGGAGGAGCTC 61.935 72.222 4.71 4.71 0.00 4.09
46 47 3.197790 CTCCCAGCGTCCGCATTG 61.198 66.667 14.70 4.25 44.88 2.82
47 48 3.958147 CTCCCAGCGTCCGCATTGT 62.958 63.158 14.70 0.00 44.88 2.71
48 49 3.055719 CCCAGCGTCCGCATTGTT 61.056 61.111 14.70 0.00 44.88 2.83
49 50 2.176546 CCAGCGTCCGCATTGTTG 59.823 61.111 14.70 2.77 44.88 3.33
50 51 2.502510 CAGCGTCCGCATTGTTGC 60.503 61.111 14.70 0.00 45.78 4.17
58 59 3.472298 GCATTGTTGCGGCGCTTG 61.472 61.111 33.26 21.02 39.49 4.01
59 60 3.472298 CATTGTTGCGGCGCTTGC 61.472 61.111 33.26 21.54 38.11 4.01
69 70 3.537297 GCGCTTGCGAGACGACTC 61.537 66.667 19.55 4.73 39.54 3.36
117 118 3.402681 CCCACTGTCGCCCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
118 119 2.124983 CCACTGTCGCCCCTCATG 60.125 66.667 0.00 0.00 0.00 3.07
119 120 2.821366 CACTGTCGCCCCTCATGC 60.821 66.667 0.00 0.00 0.00 4.06
120 121 4.101448 ACTGTCGCCCCTCATGCC 62.101 66.667 0.00 0.00 0.00 4.40
125 126 4.976925 CGCCCCTCATGCCGCTAG 62.977 72.222 0.00 0.00 0.00 3.42
136 137 3.323136 CCGCTAGCGCACGACATC 61.323 66.667 31.35 0.00 38.24 3.06
137 138 2.278206 CGCTAGCGCACGACATCT 60.278 61.111 26.07 0.00 35.30 2.90
138 139 2.289375 CGCTAGCGCACGACATCTC 61.289 63.158 26.07 0.00 35.30 2.75
139 140 1.946650 GCTAGCGCACGACATCTCC 60.947 63.158 11.47 0.00 35.78 3.71
140 141 1.730487 CTAGCGCACGACATCTCCT 59.270 57.895 11.47 0.00 0.00 3.69
141 142 0.317436 CTAGCGCACGACATCTCCTC 60.317 60.000 11.47 0.00 0.00 3.71
142 143 0.748367 TAGCGCACGACATCTCCTCT 60.748 55.000 11.47 0.00 0.00 3.69
143 144 1.587613 GCGCACGACATCTCCTCTC 60.588 63.158 0.30 0.00 0.00 3.20
144 145 1.297967 CGCACGACATCTCCTCTCG 60.298 63.158 0.00 0.00 0.00 4.04
145 146 1.587613 GCACGACATCTCCTCTCGC 60.588 63.158 0.00 0.00 0.00 5.03
146 147 1.064946 CACGACATCTCCTCTCGCC 59.935 63.158 0.00 0.00 0.00 5.54
147 148 2.122167 ACGACATCTCCTCTCGCCC 61.122 63.158 0.00 0.00 0.00 6.13
148 149 2.851071 CGACATCTCCTCTCGCCCC 61.851 68.421 0.00 0.00 0.00 5.80
149 150 2.835431 ACATCTCCTCTCGCCCCG 60.835 66.667 0.00 0.00 0.00 5.73
150 151 3.610669 CATCTCCTCTCGCCCCGG 61.611 72.222 0.00 0.00 0.00 5.73
151 152 4.924187 ATCTCCTCTCGCCCCGGG 62.924 72.222 15.80 15.80 0.00 5.73
162 163 4.410400 CCCCGGGTGGCTCAACTC 62.410 72.222 21.85 0.00 0.00 3.01
163 164 4.760047 CCCGGGTGGCTCAACTCG 62.760 72.222 14.18 0.81 43.81 4.18
170 171 2.358247 GGCTCAACTCGCCGGAAA 60.358 61.111 5.05 0.00 37.87 3.13
171 172 1.964373 GGCTCAACTCGCCGGAAAA 60.964 57.895 5.05 0.00 37.87 2.29
172 173 1.206831 GCTCAACTCGCCGGAAAAC 59.793 57.895 5.05 0.00 0.00 2.43
173 174 1.491563 CTCAACTCGCCGGAAAACG 59.508 57.895 5.05 0.00 43.80 3.60
183 184 3.153609 GGAAAACGACGTCGGAGC 58.846 61.111 37.89 23.99 44.95 4.70
184 185 1.372623 GGAAAACGACGTCGGAGCT 60.373 57.895 37.89 21.14 44.95 4.09
185 186 1.342796 GGAAAACGACGTCGGAGCTC 61.343 60.000 37.89 26.61 44.95 4.09
186 187 0.662374 GAAAACGACGTCGGAGCTCA 60.662 55.000 37.89 0.00 44.95 4.26
187 188 0.938168 AAAACGACGTCGGAGCTCAC 60.938 55.000 37.89 4.99 44.95 3.51
188 189 1.793134 AAACGACGTCGGAGCTCACT 61.793 55.000 37.89 14.95 44.95 3.41
189 190 2.098680 CGACGTCGGAGCTCACTC 59.901 66.667 29.70 3.69 42.66 3.51
190 191 2.098680 GACGTCGGAGCTCACTCG 59.901 66.667 17.19 17.36 44.48 4.18
191 192 2.358369 ACGTCGGAGCTCACTCGA 60.358 61.111 23.07 17.02 44.48 4.04
192 193 1.707239 GACGTCGGAGCTCACTCGAT 61.707 60.000 23.07 8.22 44.48 3.59
193 194 1.306642 ACGTCGGAGCTCACTCGATT 61.307 55.000 23.07 10.05 44.48 3.34
194 195 0.179161 CGTCGGAGCTCACTCGATTT 60.179 55.000 17.19 0.00 44.48 2.17
195 196 1.272781 GTCGGAGCTCACTCGATTTG 58.727 55.000 17.19 0.00 44.48 2.32
196 197 0.888619 TCGGAGCTCACTCGATTTGT 59.111 50.000 17.19 0.00 44.48 2.83
197 198 1.135373 TCGGAGCTCACTCGATTTGTC 60.135 52.381 17.19 0.00 44.48 3.18
198 199 1.272781 GGAGCTCACTCGATTTGTCG 58.727 55.000 17.19 0.00 44.48 4.35
199 200 0.642800 GAGCTCACTCGATTTGTCGC 59.357 55.000 9.40 0.00 32.04 5.19
200 201 1.073216 AGCTCACTCGATTTGTCGCG 61.073 55.000 0.00 0.00 0.00 5.87
201 202 1.991430 CTCACTCGATTTGTCGCGG 59.009 57.895 6.13 0.00 0.00 6.46
202 203 1.413767 CTCACTCGATTTGTCGCGGG 61.414 60.000 6.13 0.00 0.00 6.13
203 204 1.445410 CACTCGATTTGTCGCGGGA 60.445 57.895 6.13 0.00 0.00 5.14
204 205 1.153823 ACTCGATTTGTCGCGGGAG 60.154 57.895 6.13 4.70 0.00 4.30
205 206 1.153823 CTCGATTTGTCGCGGGAGT 60.154 57.895 6.13 0.00 0.00 3.85
206 207 1.413767 CTCGATTTGTCGCGGGAGTG 61.414 60.000 6.13 0.00 43.00 3.51
215 216 1.425428 CGCGGGAGTGAAAGAATGC 59.575 57.895 0.00 0.00 44.85 3.56
216 217 1.425428 GCGGGAGTGAAAGAATGCG 59.575 57.895 0.00 0.00 0.00 4.73
217 218 1.019278 GCGGGAGTGAAAGAATGCGA 61.019 55.000 0.00 0.00 0.00 5.10
218 219 0.721718 CGGGAGTGAAAGAATGCGAC 59.278 55.000 0.00 0.00 0.00 5.19
219 220 0.721718 GGGAGTGAAAGAATGCGACG 59.278 55.000 0.00 0.00 0.00 5.12
220 221 1.671850 GGGAGTGAAAGAATGCGACGA 60.672 52.381 0.00 0.00 0.00 4.20
221 222 2.066262 GGAGTGAAAGAATGCGACGAA 58.934 47.619 0.00 0.00 0.00 3.85
222 223 2.092838 GGAGTGAAAGAATGCGACGAAG 59.907 50.000 0.00 0.00 0.00 3.79
223 224 2.069273 AGTGAAAGAATGCGACGAAGG 58.931 47.619 0.00 0.00 0.00 3.46
224 225 2.066262 GTGAAAGAATGCGACGAAGGA 58.934 47.619 0.00 0.00 0.00 3.36
225 226 2.092838 GTGAAAGAATGCGACGAAGGAG 59.907 50.000 0.00 0.00 0.00 3.69
226 227 1.661112 GAAAGAATGCGACGAAGGAGG 59.339 52.381 0.00 0.00 0.00 4.30
227 228 0.895530 AAGAATGCGACGAAGGAGGA 59.104 50.000 0.00 0.00 0.00 3.71
228 229 0.895530 AGAATGCGACGAAGGAGGAA 59.104 50.000 0.00 0.00 0.00 3.36
229 230 1.134965 AGAATGCGACGAAGGAGGAAG 60.135 52.381 0.00 0.00 0.00 3.46
230 231 0.108138 AATGCGACGAAGGAGGAAGG 60.108 55.000 0.00 0.00 0.00 3.46
231 232 1.961180 ATGCGACGAAGGAGGAAGGG 61.961 60.000 0.00 0.00 0.00 3.95
232 233 2.893398 CGACGAAGGAGGAAGGGG 59.107 66.667 0.00 0.00 0.00 4.79
233 234 1.681327 CGACGAAGGAGGAAGGGGA 60.681 63.158 0.00 0.00 0.00 4.81
234 235 1.255667 CGACGAAGGAGGAAGGGGAA 61.256 60.000 0.00 0.00 0.00 3.97
235 236 0.981943 GACGAAGGAGGAAGGGGAAA 59.018 55.000 0.00 0.00 0.00 3.13
236 237 1.350019 GACGAAGGAGGAAGGGGAAAA 59.650 52.381 0.00 0.00 0.00 2.29
237 238 1.778484 ACGAAGGAGGAAGGGGAAAAA 59.222 47.619 0.00 0.00 0.00 1.94
238 239 2.378886 ACGAAGGAGGAAGGGGAAAAAT 59.621 45.455 0.00 0.00 0.00 1.82
239 240 2.755103 CGAAGGAGGAAGGGGAAAAATG 59.245 50.000 0.00 0.00 0.00 2.32
240 241 3.561313 CGAAGGAGGAAGGGGAAAAATGA 60.561 47.826 0.00 0.00 0.00 2.57
241 242 3.746792 AGGAGGAAGGGGAAAAATGAG 57.253 47.619 0.00 0.00 0.00 2.90
242 243 3.269034 AGGAGGAAGGGGAAAAATGAGA 58.731 45.455 0.00 0.00 0.00 3.27
243 244 3.010696 AGGAGGAAGGGGAAAAATGAGAC 59.989 47.826 0.00 0.00 0.00 3.36
244 245 3.010420 GAGGAAGGGGAAAAATGAGACG 58.990 50.000 0.00 0.00 0.00 4.18
245 246 2.092323 GGAAGGGGAAAAATGAGACGG 58.908 52.381 0.00 0.00 0.00 4.79
246 247 2.092323 GAAGGGGAAAAATGAGACGGG 58.908 52.381 0.00 0.00 0.00 5.28
247 248 1.368374 AGGGGAAAAATGAGACGGGA 58.632 50.000 0.00 0.00 0.00 5.14
248 249 1.708551 AGGGGAAAAATGAGACGGGAA 59.291 47.619 0.00 0.00 0.00 3.97
249 250 1.816835 GGGGAAAAATGAGACGGGAAC 59.183 52.381 0.00 0.00 0.00 3.62
264 265 1.718396 GGAACCCTAAAACGTCTCGG 58.282 55.000 0.00 0.00 0.00 4.63
265 266 1.273327 GGAACCCTAAAACGTCTCGGA 59.727 52.381 0.00 0.00 0.00 4.55
266 267 2.603953 GAACCCTAAAACGTCTCGGAG 58.396 52.381 0.00 0.00 0.00 4.63
267 268 0.245813 ACCCTAAAACGTCTCGGAGC 59.754 55.000 0.00 0.00 0.00 4.70
268 269 0.459759 CCCTAAAACGTCTCGGAGCC 60.460 60.000 0.00 0.00 0.00 4.70
269 270 0.245539 CCTAAAACGTCTCGGAGCCA 59.754 55.000 0.00 0.00 0.00 4.75
270 271 1.337447 CCTAAAACGTCTCGGAGCCAA 60.337 52.381 0.00 0.00 0.00 4.52
271 272 1.725164 CTAAAACGTCTCGGAGCCAAC 59.275 52.381 0.00 0.00 0.00 3.77
272 273 0.179067 AAAACGTCTCGGAGCCAACA 60.179 50.000 0.00 0.00 0.00 3.33
273 274 0.034896 AAACGTCTCGGAGCCAACAT 59.965 50.000 0.00 0.00 0.00 2.71
274 275 0.892755 AACGTCTCGGAGCCAACATA 59.107 50.000 0.00 0.00 0.00 2.29
275 276 0.456221 ACGTCTCGGAGCCAACATAG 59.544 55.000 0.00 0.00 0.00 2.23
276 277 0.738975 CGTCTCGGAGCCAACATAGA 59.261 55.000 0.00 0.00 0.00 1.98
277 278 1.338337 CGTCTCGGAGCCAACATAGAT 59.662 52.381 0.00 0.00 0.00 1.98
278 279 2.552743 CGTCTCGGAGCCAACATAGATA 59.447 50.000 0.00 0.00 0.00 1.98
279 280 3.365465 CGTCTCGGAGCCAACATAGATAG 60.365 52.174 0.00 0.00 0.00 2.08
280 281 3.570550 GTCTCGGAGCCAACATAGATAGT 59.429 47.826 0.00 0.00 0.00 2.12
281 282 3.570125 TCTCGGAGCCAACATAGATAGTG 59.430 47.826 0.00 0.00 0.00 2.74
282 283 2.628178 TCGGAGCCAACATAGATAGTGG 59.372 50.000 0.00 0.00 0.00 4.00
283 284 2.628178 CGGAGCCAACATAGATAGTGGA 59.372 50.000 0.00 0.00 0.00 4.02
284 285 3.069586 CGGAGCCAACATAGATAGTGGAA 59.930 47.826 0.00 0.00 0.00 3.53
285 286 4.262635 CGGAGCCAACATAGATAGTGGAAT 60.263 45.833 0.00 0.00 0.00 3.01
286 287 5.241662 GGAGCCAACATAGATAGTGGAATC 58.758 45.833 0.00 0.00 0.00 2.52
287 288 5.234466 AGCCAACATAGATAGTGGAATCC 57.766 43.478 0.00 0.00 0.00 3.01
288 289 4.660303 AGCCAACATAGATAGTGGAATCCA 59.340 41.667 0.00 0.00 0.00 3.41
289 290 4.999950 GCCAACATAGATAGTGGAATCCAG 59.000 45.833 0.27 0.00 32.34 3.86
290 291 5.221722 GCCAACATAGATAGTGGAATCCAGA 60.222 44.000 0.27 0.00 32.34 3.86
291 292 6.462500 CCAACATAGATAGTGGAATCCAGAG 58.538 44.000 0.27 0.00 32.34 3.35
292 293 5.736951 ACATAGATAGTGGAATCCAGAGC 57.263 43.478 0.27 0.00 32.34 4.09
293 294 4.219507 ACATAGATAGTGGAATCCAGAGCG 59.780 45.833 0.27 0.00 32.34 5.03
294 295 1.967066 AGATAGTGGAATCCAGAGCGG 59.033 52.381 0.27 0.00 32.34 5.52
295 296 1.689273 GATAGTGGAATCCAGAGCGGT 59.311 52.381 0.27 0.00 32.34 5.68
296 297 1.568504 TAGTGGAATCCAGAGCGGTT 58.431 50.000 0.27 0.00 32.34 4.44
297 298 0.693049 AGTGGAATCCAGAGCGGTTT 59.307 50.000 0.27 0.00 32.34 3.27
298 299 1.906574 AGTGGAATCCAGAGCGGTTTA 59.093 47.619 0.27 0.00 32.34 2.01
299 300 2.007608 GTGGAATCCAGAGCGGTTTAC 58.992 52.381 0.27 0.00 32.34 2.01
300 301 3.559774 GTGGAATCCAGAGCGGTTTACG 61.560 54.545 0.27 0.00 39.14 3.18
301 302 1.287425 GAATCCAGAGCGGTTTACGG 58.713 55.000 0.00 0.00 44.51 4.02
302 303 0.107848 AATCCAGAGCGGTTTACGGG 60.108 55.000 0.00 0.00 44.51 5.28
303 304 2.588856 ATCCAGAGCGGTTTACGGGC 62.589 60.000 0.00 0.00 44.51 6.13
304 305 2.818274 CAGAGCGGTTTACGGGCC 60.818 66.667 0.00 0.00 44.51 5.80
305 306 3.001406 AGAGCGGTTTACGGGCCT 61.001 61.111 0.84 0.00 44.51 5.19
306 307 2.510918 GAGCGGTTTACGGGCCTC 60.511 66.667 0.84 0.00 44.51 4.70
307 308 4.091939 AGCGGTTTACGGGCCTCC 62.092 66.667 0.84 0.00 44.51 4.30
309 310 3.708544 CGGTTTACGGGCCTCCCA 61.709 66.667 0.84 0.00 45.83 4.37
310 311 3.004090 GGTTTACGGGCCTCCCAT 58.996 61.111 0.84 0.00 45.83 4.00
311 312 1.688269 CGGTTTACGGGCCTCCCATA 61.688 60.000 0.84 0.00 45.83 2.74
312 313 0.547553 GGTTTACGGGCCTCCCATAA 59.452 55.000 0.84 0.00 45.83 1.90
313 314 1.064537 GGTTTACGGGCCTCCCATAAA 60.065 52.381 0.84 0.92 45.83 1.40
314 315 2.423803 GGTTTACGGGCCTCCCATAAAT 60.424 50.000 0.84 0.00 42.17 1.40
315 316 3.181441 GGTTTACGGGCCTCCCATAAATA 60.181 47.826 0.84 0.00 42.17 1.40
316 317 4.507869 GGTTTACGGGCCTCCCATAAATAT 60.508 45.833 0.84 0.00 42.17 1.28
317 318 5.074804 GTTTACGGGCCTCCCATAAATATT 58.925 41.667 0.84 0.00 42.17 1.28
318 319 3.895704 ACGGGCCTCCCATAAATATTT 57.104 42.857 0.84 5.89 45.83 1.40
319 320 4.193240 ACGGGCCTCCCATAAATATTTT 57.807 40.909 5.91 0.00 45.83 1.82
320 321 5.327737 ACGGGCCTCCCATAAATATTTTA 57.672 39.130 5.91 0.00 45.83 1.52
321 322 5.074804 ACGGGCCTCCCATAAATATTTTAC 58.925 41.667 5.91 0.00 45.83 2.01
322 323 4.155280 CGGGCCTCCCATAAATATTTTACG 59.845 45.833 5.91 0.00 45.83 3.18
323 324 4.461431 GGGCCTCCCATAAATATTTTACGG 59.539 45.833 5.91 4.83 44.65 4.02
324 325 5.318630 GGCCTCCCATAAATATTTTACGGA 58.681 41.667 5.91 7.64 0.00 4.69
325 326 5.182570 GGCCTCCCATAAATATTTTACGGAC 59.817 44.000 5.91 0.00 0.00 4.79
326 327 5.182570 GCCTCCCATAAATATTTTACGGACC 59.817 44.000 5.91 0.00 0.00 4.46
327 328 5.410439 CCTCCCATAAATATTTTACGGACCG 59.590 44.000 13.61 13.61 0.00 4.79
328 329 5.307204 TCCCATAAATATTTTACGGACCGG 58.693 41.667 20.00 0.00 0.00 5.28
329 330 4.456566 CCCATAAATATTTTACGGACCGGG 59.543 45.833 20.00 4.41 0.00 5.73
330 331 4.083164 CCATAAATATTTTACGGACCGGGC 60.083 45.833 20.00 0.21 0.00 6.13
331 332 1.585297 AATATTTTACGGACCGGGCG 58.415 50.000 20.00 1.05 0.00 6.13
332 333 0.249996 ATATTTTACGGACCGGGCGG 60.250 55.000 20.00 14.35 42.03 6.13
357 358 4.603231 TTTTACCGTCATGTAAATCCGC 57.397 40.909 0.00 0.00 39.65 5.54
358 359 2.228138 TACCGTCATGTAAATCCGCC 57.772 50.000 0.00 0.00 0.00 6.13
359 360 0.250793 ACCGTCATGTAAATCCGCCA 59.749 50.000 0.00 0.00 0.00 5.69
360 361 0.937304 CCGTCATGTAAATCCGCCAG 59.063 55.000 0.00 0.00 0.00 4.85
361 362 0.937304 CGTCATGTAAATCCGCCAGG 59.063 55.000 0.00 0.00 39.46 4.45
374 375 4.778143 CCAGGAAAGGCGTCCCGG 62.778 72.222 0.00 0.00 38.59 5.73
385 386 2.096442 CGTCCCGGCGAGGTTTTAC 61.096 63.158 9.30 1.26 38.74 2.01
386 387 1.294459 GTCCCGGCGAGGTTTTACT 59.706 57.895 9.30 0.00 38.74 2.24
387 388 0.532115 GTCCCGGCGAGGTTTTACTA 59.468 55.000 9.30 0.00 38.74 1.82
392 393 2.545322 CCGGCGAGGTTTTACTAGATCC 60.545 54.545 9.30 0.00 34.51 3.36
411 412 1.202428 CCGCTAGAGTTGCTCTAACCC 60.202 57.143 7.22 0.00 41.74 4.11
412 413 1.751924 CGCTAGAGTTGCTCTAACCCT 59.248 52.381 7.22 0.00 41.74 4.34
416 417 4.277423 GCTAGAGTTGCTCTAACCCTCTAG 59.723 50.000 14.62 14.62 41.74 2.43
424 425 3.067040 GCTCTAACCCTCTAGAAAGACCG 59.933 52.174 0.00 0.00 0.00 4.79
444 445 3.062122 GGTCCAAGGAAAACCGACATA 57.938 47.619 0.00 0.00 0.00 2.29
465 466 2.507339 AACATTTGCACCTCCAAACG 57.493 45.000 0.00 0.00 37.51 3.60
489 490 7.440556 ACGAAGACAATTTGGAGATATGATCAG 59.559 37.037 0.09 0.00 0.00 2.90
516 517 5.018809 ACCATCAATTTTAGCACCACATCT 58.981 37.500 0.00 0.00 0.00 2.90
520 521 6.741992 TCAATTTTAGCACCACATCTACTG 57.258 37.500 0.00 0.00 0.00 2.74
521 522 5.647658 TCAATTTTAGCACCACATCTACTGG 59.352 40.000 0.00 0.00 34.62 4.00
522 523 4.901197 TTTTAGCACCACATCTACTGGA 57.099 40.909 0.00 0.00 32.55 3.86
523 524 4.471904 TTTAGCACCACATCTACTGGAG 57.528 45.455 0.00 0.00 32.55 3.86
524 525 1.944177 AGCACCACATCTACTGGAGT 58.056 50.000 0.00 0.00 32.55 3.85
525 526 3.101643 AGCACCACATCTACTGGAGTA 57.898 47.619 0.00 0.00 32.55 2.59
536 537 9.314321 CACATCTACTGGAGTACGAAATTAATT 57.686 33.333 0.00 0.00 0.00 1.40
569 570 3.283684 CCACGCCGAAAAGCACCA 61.284 61.111 0.00 0.00 0.00 4.17
580 581 3.356658 CGAAAAGCACCAAATAACGAACG 59.643 43.478 0.00 0.00 0.00 3.95
593 594 1.345856 CGAACGGGTTTAATCGCCG 59.654 57.895 0.00 0.00 0.00 6.46
595 596 1.637478 GAACGGGTTTAATCGCCGCA 61.637 55.000 11.20 0.00 0.00 5.69
738 750 2.750637 GCTCTCCGTCCCGTCTCA 60.751 66.667 0.00 0.00 0.00 3.27
1184 1235 1.897398 GCCAAGGTACGTGCGACTTG 61.897 60.000 13.16 13.16 39.88 3.16
1185 1236 2.150424 CAAGGTACGTGCGACTTGG 58.850 57.895 12.55 0.00 37.31 3.61
1196 1256 2.598787 CGACTTGGGGGTGCCCTTA 61.599 63.158 7.26 0.00 44.66 2.69
1198 1258 1.465387 ACTTGGGGGTGCCCTTACT 60.465 57.895 7.26 0.00 44.66 2.24
1347 1415 2.167861 GCACTCGCGGAAGGTGATC 61.168 63.158 19.97 0.00 33.99 2.92
1398 1504 9.538508 ACCGTTATGATTTTATCCTGTTACTAC 57.461 33.333 0.00 0.00 0.00 2.73
1551 1657 4.372235 GTACAGACGTACGCGCAT 57.628 55.556 16.72 0.00 38.77 4.73
1562 1668 1.906994 TACGCGCATTGGCACTTCAC 61.907 55.000 5.73 0.00 41.24 3.18
1568 1675 1.825090 CATTGGCACTTCACCTAGCA 58.175 50.000 0.00 0.00 0.00 3.49
1584 1691 1.300233 GCAGTAGAATCTCGCCCGG 60.300 63.158 0.00 0.00 0.00 5.73
1585 1692 2.017559 GCAGTAGAATCTCGCCCGGT 62.018 60.000 0.00 0.00 0.00 5.28
1587 1694 0.106619 AGTAGAATCTCGCCCGGTCT 60.107 55.000 0.00 0.00 0.00 3.85
1684 1792 1.374885 CGTACACACCAATGGCGGA 60.375 57.895 0.00 0.00 0.00 5.54
1729 1837 2.232941 GAGTCATTGGTTCGTCCTGGTA 59.767 50.000 0.00 0.00 37.07 3.25
1838 1946 3.963647 TGCGTGCATGTGGTGTGC 61.964 61.111 7.93 0.00 42.81 4.57
1845 1953 0.179181 GCATGTGGTGTGCTTGATCG 60.179 55.000 0.00 0.00 39.45 3.69
1879 1987 7.092716 GGTTTTGTAGCATTTCATCATCAGTT 58.907 34.615 0.00 0.00 0.00 3.16
2128 2246 3.743132 AGTCCTGGGTATAATTGGTGGA 58.257 45.455 0.00 0.00 0.00 4.02
2132 2250 4.141274 TCCTGGGTATAATTGGTGGATGTG 60.141 45.833 0.00 0.00 0.00 3.21
2162 2280 6.204495 GTCTCAGCACTCTTCTGAATTTCTTT 59.796 38.462 0.00 0.00 39.77 2.52
2220 2348 9.565090 TGATAAAAGATGATTATCTGAAGGTGG 57.435 33.333 0.00 0.00 42.80 4.61
2344 2474 7.447374 TGTTAGGTGATACCAAAAGTGAATG 57.553 36.000 0.28 0.00 41.95 2.67
2365 2495 4.325972 TGCATTCTCTTTGAGCATACACA 58.674 39.130 0.00 0.00 0.00 3.72
2366 2496 4.945543 TGCATTCTCTTTGAGCATACACAT 59.054 37.500 0.00 0.00 0.00 3.21
2462 2594 1.425428 GCGGGCTTGAATTGAGACG 59.575 57.895 0.00 0.00 0.00 4.18
2486 2619 5.413499 GCATATCTTTTGCAAGTTGGATGT 58.587 37.500 4.75 0.00 39.90 3.06
2600 2733 5.769367 TCTATCTTGTGTATACATGTCCGC 58.231 41.667 9.18 0.00 36.53 5.54
2742 2875 4.352039 CACGTATACTCAAGGCTACACTG 58.648 47.826 0.56 0.00 0.00 3.66
2802 2935 3.181487 ACAAAAGGTGAACACTGCATGAC 60.181 43.478 0.00 0.00 0.00 3.06
2820 2953 1.268079 GACTGTTTTTGCTCTGAGCCC 59.732 52.381 25.61 9.70 41.51 5.19
2836 2969 2.505819 GAGCCCTTCCCTTAACTGATCA 59.494 50.000 0.00 0.00 0.00 2.92
2869 3002 5.171337 CAGAACCGTTTTTCATTTCTCAACG 59.829 40.000 0.00 0.00 39.90 4.10
3072 3205 4.455877 GTCAGGTTTGGATTCCACAACTAG 59.544 45.833 9.07 4.91 28.38 2.57
3304 3437 5.841957 AGCTTTAGGCAATGTAAATCCTG 57.158 39.130 0.00 0.00 44.79 3.86
3622 3755 8.258708 AGTATTATGTGACTTACTTCTTCACCC 58.741 37.037 0.00 0.00 39.16 4.61
3645 3778 6.406400 CCCATTTTAACAGAGGAAACACAACA 60.406 38.462 0.00 0.00 0.00 3.33
3677 3810 6.125029 AGGTGAAAGACATTGATCCATTAGG 58.875 40.000 0.00 0.00 0.00 2.69
3801 3934 4.410555 GGGGAGATATATGGAGGTGAATCC 59.589 50.000 0.00 0.00 40.03 3.01
3856 3989 7.621428 ATTCTGATGAACAAGGTATGAACAG 57.379 36.000 0.00 0.00 34.71 3.16
4025 4161 3.807622 TCGTTTCAGTGGAAAGTGATGTC 59.192 43.478 0.00 0.00 43.35 3.06
4039 4175 8.689972 GGAAAGTGATGTCTTTATTCCATCATT 58.310 33.333 5.02 0.00 44.70 2.57
4118 4254 2.050144 ACAATCAGTCCTGACAGGTGT 58.950 47.619 21.06 13.60 43.11 4.16
4153 4290 3.064545 CACTTGTCTATAAAGCTGCTGCC 59.935 47.826 12.44 0.00 40.80 4.85
4178 4318 2.763448 CTCTTCCCTTCTCGGTCTCATT 59.237 50.000 0.00 0.00 0.00 2.57
4258 4399 5.449177 GGATTACTCGATGAAGGCAAAAAGG 60.449 44.000 0.00 0.00 0.00 3.11
4268 4409 3.575965 AGGCAAAAAGGTATCGCAAAG 57.424 42.857 0.00 0.00 0.00 2.77
4324 4465 0.034670 GCATGAGAGCCAAAGGACCT 60.035 55.000 0.00 0.00 0.00 3.85
4325 4466 1.747709 CATGAGAGCCAAAGGACCTG 58.252 55.000 0.00 0.00 0.00 4.00
4374 4516 7.877612 TGTTTCTTATGCTGTTCTTCATCTGTA 59.122 33.333 0.00 0.00 0.00 2.74
4573 4715 3.970410 CTGCCCCCTGGTCAGCAA 61.970 66.667 4.42 0.00 34.26 3.91
4592 4734 3.244700 GCAATCCCAGGTACATAGAGCAT 60.245 47.826 0.00 0.00 0.00 3.79
4652 4794 3.866066 GCTTCTGCTCAGGTGACATTACA 60.866 47.826 0.00 0.00 36.03 2.41
4716 4858 4.559153 GCAGAACAAGTTGCCAATGTATT 58.441 39.130 1.81 0.00 34.28 1.89
4717 4859 4.622740 GCAGAACAAGTTGCCAATGTATTC 59.377 41.667 1.81 0.00 34.28 1.75
4718 4860 5.163513 CAGAACAAGTTGCCAATGTATTCC 58.836 41.667 1.81 0.00 0.00 3.01
4719 4861 4.220602 AGAACAAGTTGCCAATGTATTCCC 59.779 41.667 1.81 0.00 0.00 3.97
4720 4862 3.778265 ACAAGTTGCCAATGTATTCCCT 58.222 40.909 1.81 0.00 0.00 4.20
4721 4863 3.763897 ACAAGTTGCCAATGTATTCCCTC 59.236 43.478 1.81 0.00 0.00 4.30
4722 4864 4.019174 CAAGTTGCCAATGTATTCCCTCT 58.981 43.478 0.00 0.00 0.00 3.69
4723 4865 3.624777 AGTTGCCAATGTATTCCCTCTG 58.375 45.455 0.00 0.00 0.00 3.35
4724 4866 3.010584 AGTTGCCAATGTATTCCCTCTGT 59.989 43.478 0.00 0.00 0.00 3.41
4725 4867 4.227300 AGTTGCCAATGTATTCCCTCTGTA 59.773 41.667 0.00 0.00 0.00 2.74
4726 4868 4.853468 TGCCAATGTATTCCCTCTGTAA 57.147 40.909 0.00 0.00 0.00 2.41
4727 4869 5.186256 TGCCAATGTATTCCCTCTGTAAA 57.814 39.130 0.00 0.00 0.00 2.01
4728 4870 4.947388 TGCCAATGTATTCCCTCTGTAAAC 59.053 41.667 0.00 0.00 0.00 2.01
4729 4871 5.193679 GCCAATGTATTCCCTCTGTAAACT 58.806 41.667 0.00 0.00 0.00 2.66
4730 4872 6.069905 TGCCAATGTATTCCCTCTGTAAACTA 60.070 38.462 0.00 0.00 0.00 2.24
4731 4873 6.826741 GCCAATGTATTCCCTCTGTAAACTAA 59.173 38.462 0.00 0.00 0.00 2.24
4732 4874 7.502561 GCCAATGTATTCCCTCTGTAAACTAAT 59.497 37.037 0.00 0.00 0.00 1.73
4741 4883 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4742 4884 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4743 4885 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4744 4886 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4759 4901 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
4760 4902 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
4774 4916 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
4775 4917 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
4776 4918 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
4777 4919 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
4789 4931 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
4790 4932 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
4791 4933 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
4792 4934 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
4793 4935 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
4794 4936 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
4795 4937 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
4796 4938 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
4797 4939 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
4850 4992 4.267349 ACAGCGGTTTAGATGTAACTGT 57.733 40.909 0.00 0.00 39.15 3.55
4867 5009 3.146847 ACTGTAGTTTGTAAGCTTGGGC 58.853 45.455 9.86 0.00 39.06 5.36
4913 5055 8.228905 AGTATAGGACTAATAAAGAGCAGAGGT 58.771 37.037 0.00 0.00 36.27 3.85
4973 5115 4.136796 CACTGGAGATGGTTTCTGTTGAA 58.863 43.478 0.00 0.00 33.74 2.69
5023 5165 2.000447 GAGTATGTTCAGAACACGGCC 59.000 52.381 18.49 6.67 45.50 6.13
5062 5204 2.800250 AGCTGCATTTGTAAGCCTCTT 58.200 42.857 1.02 0.00 37.68 2.85
5119 5261 6.662755 AGGAATAGGTGAAACATGCTGAATA 58.337 36.000 0.00 0.00 39.98 1.75
5120 5262 7.118723 AGGAATAGGTGAAACATGCTGAATAA 58.881 34.615 0.00 0.00 39.98 1.40
5125 5267 6.476378 AGGTGAAACATGCTGAATAACTAGT 58.524 36.000 0.00 0.00 39.98 2.57
5129 5271 6.714810 TGAAACATGCTGAATAACTAGTTGGT 59.285 34.615 18.56 5.48 0.00 3.67
5176 5318 4.101114 TGGAGGAAGGAACTATACAGCAA 58.899 43.478 0.00 0.00 38.49 3.91
5334 5478 0.802494 AGCTGATAAACAAACGCCCG 59.198 50.000 0.00 0.00 0.00 6.13
5438 5582 6.708285 CAACAACCATTAGTTAGTACTCCCT 58.292 40.000 0.00 0.00 36.18 4.20
5439 5583 6.541934 ACAACCATTAGTTAGTACTCCCTC 57.458 41.667 0.00 0.00 36.18 4.30
5440 5584 5.424573 ACAACCATTAGTTAGTACTCCCTCC 59.575 44.000 0.00 0.00 36.18 4.30
5441 5585 4.213513 ACCATTAGTTAGTACTCCCTCCG 58.786 47.826 0.00 0.00 35.78 4.63
5442 5586 4.213513 CCATTAGTTAGTACTCCCTCCGT 58.786 47.826 0.00 0.00 35.78 4.69
5443 5587 5.103940 ACCATTAGTTAGTACTCCCTCCGTA 60.104 44.000 0.00 0.00 35.78 4.02
5444 5588 5.829924 CCATTAGTTAGTACTCCCTCCGTAA 59.170 44.000 0.00 0.00 35.78 3.18
5445 5589 6.322201 CCATTAGTTAGTACTCCCTCCGTAAA 59.678 42.308 0.00 0.00 35.78 2.01
5446 5590 6.759497 TTAGTTAGTACTCCCTCCGTAAAC 57.241 41.667 0.00 0.00 35.78 2.01
5447 5591 4.928263 AGTTAGTACTCCCTCCGTAAACT 58.072 43.478 0.00 0.00 0.00 2.66
5448 5592 6.067217 AGTTAGTACTCCCTCCGTAAACTA 57.933 41.667 0.00 0.00 0.00 2.24
5449 5593 6.485171 AGTTAGTACTCCCTCCGTAAACTAA 58.515 40.000 0.00 0.00 0.00 2.24
5450 5594 7.122048 AGTTAGTACTCCCTCCGTAAACTAAT 58.878 38.462 0.00 0.00 0.00 1.73
5451 5595 8.275040 AGTTAGTACTCCCTCCGTAAACTAATA 58.725 37.037 0.00 0.00 0.00 0.98
5452 5596 9.072375 GTTAGTACTCCCTCCGTAAACTAATAT 57.928 37.037 0.00 0.00 0.00 1.28
5455 5599 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
5456 5600 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
5457 5601 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5458 5602 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
5459 5603 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
5460 5604 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
5461 5605 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
5462 5606 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
5505 5649 9.832445 TGCTCTTATATTAGTTTACAAAGGGAG 57.168 33.333 0.00 0.00 0.00 4.30
5506 5650 9.833917 GCTCTTATATTAGTTTACAAAGGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
5520 5664 2.662309 GGAGTACTCCCGTTCACCA 58.338 57.895 28.87 0.00 43.94 4.17
5521 5665 0.245813 GGAGTACTCCCGTTCACCAC 59.754 60.000 28.87 1.78 43.94 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.231889 CTCCTCCATCCGCCCATCG 62.232 68.421 0.00 0.00 38.08 3.84
11 12 2.746359 CTCCTCCATCCGCCCATC 59.254 66.667 0.00 0.00 0.00 3.51
12 13 3.564218 GCTCCTCCATCCGCCCAT 61.564 66.667 0.00 0.00 0.00 4.00
13 14 4.804420 AGCTCCTCCATCCGCCCA 62.804 66.667 0.00 0.00 0.00 5.36
14 15 3.934962 GAGCTCCTCCATCCGCCC 61.935 72.222 0.87 0.00 0.00 6.13
23 24 3.844090 GGACGCTGGGAGCTCCTC 61.844 72.222 31.36 20.12 39.60 3.71
29 30 3.197790 CAATGCGGACGCTGGGAG 61.198 66.667 18.04 0.11 42.51 4.30
30 31 3.545124 AACAATGCGGACGCTGGGA 62.545 57.895 18.04 0.00 42.51 4.37
31 32 3.055719 AACAATGCGGACGCTGGG 61.056 61.111 18.04 9.03 42.51 4.45
32 33 2.176546 CAACAATGCGGACGCTGG 59.823 61.111 18.04 9.37 42.51 4.85
33 34 2.502510 GCAACAATGCGGACGCTG 60.503 61.111 18.04 10.97 43.83 5.18
42 43 3.472298 GCAAGCGCCGCAACAATG 61.472 61.111 13.36 3.10 0.00 2.82
52 53 3.537297 GAGTCGTCTCGCAAGCGC 61.537 66.667 9.97 0.00 39.59 5.92
100 101 3.402681 ATGAGGGGCGACAGTGGG 61.403 66.667 0.00 0.00 0.00 4.61
101 102 2.124983 CATGAGGGGCGACAGTGG 60.125 66.667 0.00 0.00 0.00 4.00
102 103 2.821366 GCATGAGGGGCGACAGTG 60.821 66.667 0.00 0.00 0.00 3.66
103 104 4.101448 GGCATGAGGGGCGACAGT 62.101 66.667 0.00 0.00 0.00 3.55
110 111 4.976925 CGCTAGCGGCATGAGGGG 62.977 72.222 29.29 0.00 41.91 4.79
121 122 1.946650 GGAGATGTCGTGCGCTAGC 60.947 63.158 9.73 4.06 45.41 3.42
122 123 0.317436 GAGGAGATGTCGTGCGCTAG 60.317 60.000 9.73 2.04 0.00 3.42
123 124 0.748367 AGAGGAGATGTCGTGCGCTA 60.748 55.000 9.73 0.00 0.00 4.26
124 125 1.999071 GAGAGGAGATGTCGTGCGCT 61.999 60.000 9.73 0.00 0.00 5.92
125 126 1.587613 GAGAGGAGATGTCGTGCGC 60.588 63.158 0.00 0.00 0.00 6.09
126 127 1.297967 CGAGAGGAGATGTCGTGCG 60.298 63.158 0.00 0.00 39.72 5.34
127 128 1.587613 GCGAGAGGAGATGTCGTGC 60.588 63.158 0.00 0.00 45.96 5.34
128 129 1.064946 GGCGAGAGGAGATGTCGTG 59.935 63.158 0.00 0.00 45.96 4.35
129 130 2.122167 GGGCGAGAGGAGATGTCGT 61.122 63.158 0.00 0.00 45.96 4.34
130 131 2.725008 GGGCGAGAGGAGATGTCG 59.275 66.667 0.00 0.00 46.91 4.35
131 132 2.851071 CGGGGCGAGAGGAGATGTC 61.851 68.421 0.00 0.00 0.00 3.06
132 133 2.835431 CGGGGCGAGAGGAGATGT 60.835 66.667 0.00 0.00 0.00 3.06
133 134 3.610669 CCGGGGCGAGAGGAGATG 61.611 72.222 0.00 0.00 0.00 2.90
134 135 4.924187 CCCGGGGCGAGAGGAGAT 62.924 72.222 14.71 0.00 0.00 2.75
145 146 4.410400 GAGTTGAGCCACCCGGGG 62.410 72.222 27.92 12.73 37.04 5.73
146 147 4.760047 CGAGTTGAGCCACCCGGG 62.760 72.222 22.25 22.25 40.85 5.73
154 155 1.206831 GTTTTCCGGCGAGTTGAGC 59.793 57.895 9.30 0.00 0.00 4.26
155 156 0.942410 TCGTTTTCCGGCGAGTTGAG 60.942 55.000 9.30 0.00 37.11 3.02
156 157 1.067749 TCGTTTTCCGGCGAGTTGA 59.932 52.632 9.30 0.00 37.11 3.18
157 158 1.203313 GTCGTTTTCCGGCGAGTTG 59.797 57.895 9.30 0.00 37.82 3.16
158 159 3.633951 GTCGTTTTCCGGCGAGTT 58.366 55.556 9.30 0.00 37.82 3.01
163 164 3.770424 CCGACGTCGTTTTCCGGC 61.770 66.667 33.49 0.00 37.97 6.13
164 165 2.050168 TCCGACGTCGTTTTCCGG 60.050 61.111 33.49 19.11 41.36 5.14
165 166 2.713894 GCTCCGACGTCGTTTTCCG 61.714 63.158 33.49 18.72 37.74 4.30
166 167 1.342796 GAGCTCCGACGTCGTTTTCC 61.343 60.000 33.49 17.16 37.74 3.13
167 168 0.662374 TGAGCTCCGACGTCGTTTTC 60.662 55.000 33.49 23.99 37.74 2.29
168 169 0.938168 GTGAGCTCCGACGTCGTTTT 60.938 55.000 33.49 17.59 37.74 2.43
169 170 1.371389 GTGAGCTCCGACGTCGTTT 60.371 57.895 33.49 17.25 37.74 3.60
170 171 2.185103 GAGTGAGCTCCGACGTCGTT 62.185 60.000 33.49 17.60 37.74 3.85
171 172 2.668889 AGTGAGCTCCGACGTCGT 60.669 61.111 33.49 17.59 37.74 4.34
172 173 2.098680 GAGTGAGCTCCGACGTCG 59.901 66.667 30.33 30.33 35.76 5.12
173 174 1.707239 ATCGAGTGAGCTCCGACGTC 61.707 60.000 14.49 5.18 38.49 4.34
174 175 1.306642 AATCGAGTGAGCTCCGACGT 61.307 55.000 14.49 4.79 38.49 4.34
175 176 0.179161 AAATCGAGTGAGCTCCGACG 60.179 55.000 14.49 14.39 38.49 5.12
176 177 1.272781 CAAATCGAGTGAGCTCCGAC 58.727 55.000 14.49 5.94 38.49 4.79
177 178 0.888619 ACAAATCGAGTGAGCTCCGA 59.111 50.000 12.15 13.55 38.49 4.55
178 179 1.272781 GACAAATCGAGTGAGCTCCG 58.727 55.000 12.15 7.95 38.49 4.63
190 191 1.128692 CTTTCACTCCCGCGACAAATC 59.871 52.381 8.23 0.00 0.00 2.17
191 192 1.156736 CTTTCACTCCCGCGACAAAT 58.843 50.000 8.23 0.00 0.00 2.32
192 193 0.105224 TCTTTCACTCCCGCGACAAA 59.895 50.000 8.23 0.00 0.00 2.83
193 194 0.105224 TTCTTTCACTCCCGCGACAA 59.895 50.000 8.23 0.00 0.00 3.18
194 195 0.320374 ATTCTTTCACTCCCGCGACA 59.680 50.000 8.23 0.00 0.00 4.35
195 196 0.721718 CATTCTTTCACTCCCGCGAC 59.278 55.000 8.23 0.00 0.00 5.19
196 197 1.019278 GCATTCTTTCACTCCCGCGA 61.019 55.000 8.23 0.00 0.00 5.87
197 198 1.425428 GCATTCTTTCACTCCCGCG 59.575 57.895 0.00 0.00 0.00 6.46
198 199 1.019278 TCGCATTCTTTCACTCCCGC 61.019 55.000 0.00 0.00 0.00 6.13
199 200 0.721718 GTCGCATTCTTTCACTCCCG 59.278 55.000 0.00 0.00 0.00 5.14
200 201 0.721718 CGTCGCATTCTTTCACTCCC 59.278 55.000 0.00 0.00 0.00 4.30
201 202 1.710013 TCGTCGCATTCTTTCACTCC 58.290 50.000 0.00 0.00 0.00 3.85
202 203 2.092838 CCTTCGTCGCATTCTTTCACTC 59.907 50.000 0.00 0.00 0.00 3.51
203 204 2.069273 CCTTCGTCGCATTCTTTCACT 58.931 47.619 0.00 0.00 0.00 3.41
204 205 2.066262 TCCTTCGTCGCATTCTTTCAC 58.934 47.619 0.00 0.00 0.00 3.18
205 206 2.337583 CTCCTTCGTCGCATTCTTTCA 58.662 47.619 0.00 0.00 0.00 2.69
206 207 1.661112 CCTCCTTCGTCGCATTCTTTC 59.339 52.381 0.00 0.00 0.00 2.62
207 208 1.275291 TCCTCCTTCGTCGCATTCTTT 59.725 47.619 0.00 0.00 0.00 2.52
208 209 0.895530 TCCTCCTTCGTCGCATTCTT 59.104 50.000 0.00 0.00 0.00 2.52
209 210 0.895530 TTCCTCCTTCGTCGCATTCT 59.104 50.000 0.00 0.00 0.00 2.40
210 211 1.281899 CTTCCTCCTTCGTCGCATTC 58.718 55.000 0.00 0.00 0.00 2.67
211 212 0.108138 CCTTCCTCCTTCGTCGCATT 60.108 55.000 0.00 0.00 0.00 3.56
212 213 1.517832 CCTTCCTCCTTCGTCGCAT 59.482 57.895 0.00 0.00 0.00 4.73
213 214 2.646175 CCCTTCCTCCTTCGTCGCA 61.646 63.158 0.00 0.00 0.00 5.10
214 215 2.184579 CCCTTCCTCCTTCGTCGC 59.815 66.667 0.00 0.00 0.00 5.19
215 216 1.255667 TTCCCCTTCCTCCTTCGTCG 61.256 60.000 0.00 0.00 0.00 5.12
216 217 0.981943 TTTCCCCTTCCTCCTTCGTC 59.018 55.000 0.00 0.00 0.00 4.20
217 218 1.441695 TTTTCCCCTTCCTCCTTCGT 58.558 50.000 0.00 0.00 0.00 3.85
218 219 2.579410 TTTTTCCCCTTCCTCCTTCG 57.421 50.000 0.00 0.00 0.00 3.79
219 220 4.019858 CTCATTTTTCCCCTTCCTCCTTC 58.980 47.826 0.00 0.00 0.00 3.46
220 221 3.662642 TCTCATTTTTCCCCTTCCTCCTT 59.337 43.478 0.00 0.00 0.00 3.36
221 222 3.010696 GTCTCATTTTTCCCCTTCCTCCT 59.989 47.826 0.00 0.00 0.00 3.69
222 223 3.357203 GTCTCATTTTTCCCCTTCCTCC 58.643 50.000 0.00 0.00 0.00 4.30
223 224 3.010420 CGTCTCATTTTTCCCCTTCCTC 58.990 50.000 0.00 0.00 0.00 3.71
224 225 2.290960 CCGTCTCATTTTTCCCCTTCCT 60.291 50.000 0.00 0.00 0.00 3.36
225 226 2.092323 CCGTCTCATTTTTCCCCTTCC 58.908 52.381 0.00 0.00 0.00 3.46
226 227 2.092323 CCCGTCTCATTTTTCCCCTTC 58.908 52.381 0.00 0.00 0.00 3.46
227 228 1.708551 TCCCGTCTCATTTTTCCCCTT 59.291 47.619 0.00 0.00 0.00 3.95
228 229 1.368374 TCCCGTCTCATTTTTCCCCT 58.632 50.000 0.00 0.00 0.00 4.79
229 230 1.816835 GTTCCCGTCTCATTTTTCCCC 59.183 52.381 0.00 0.00 0.00 4.81
230 231 1.816835 GGTTCCCGTCTCATTTTTCCC 59.183 52.381 0.00 0.00 0.00 3.97
231 232 1.816835 GGGTTCCCGTCTCATTTTTCC 59.183 52.381 0.00 0.00 0.00 3.13
232 233 2.791655 AGGGTTCCCGTCTCATTTTTC 58.208 47.619 1.91 0.00 0.00 2.29
233 234 2.971901 AGGGTTCCCGTCTCATTTTT 57.028 45.000 1.91 0.00 0.00 1.94
234 235 4.376225 TTTAGGGTTCCCGTCTCATTTT 57.624 40.909 1.91 0.00 0.00 1.82
235 236 4.077108 GTTTTAGGGTTCCCGTCTCATTT 58.923 43.478 1.91 0.00 0.00 2.32
236 237 3.682696 GTTTTAGGGTTCCCGTCTCATT 58.317 45.455 1.91 0.00 0.00 2.57
237 238 2.354403 CGTTTTAGGGTTCCCGTCTCAT 60.354 50.000 1.91 0.00 0.00 2.90
238 239 1.001181 CGTTTTAGGGTTCCCGTCTCA 59.999 52.381 1.91 0.00 0.00 3.27
239 240 1.001293 ACGTTTTAGGGTTCCCGTCTC 59.999 52.381 1.91 0.00 0.00 3.36
240 241 1.001293 GACGTTTTAGGGTTCCCGTCT 59.999 52.381 1.91 0.00 40.91 4.18
241 242 1.001293 AGACGTTTTAGGGTTCCCGTC 59.999 52.381 1.91 0.00 43.52 4.79
242 243 1.001293 GAGACGTTTTAGGGTTCCCGT 59.999 52.381 1.91 0.00 0.00 5.28
243 244 1.718396 GAGACGTTTTAGGGTTCCCG 58.282 55.000 1.91 0.00 0.00 5.14
244 245 1.673923 CCGAGACGTTTTAGGGTTCCC 60.674 57.143 0.00 0.00 0.00 3.97
245 246 1.273327 TCCGAGACGTTTTAGGGTTCC 59.727 52.381 0.00 0.00 0.00 3.62
246 247 2.603953 CTCCGAGACGTTTTAGGGTTC 58.396 52.381 0.00 0.00 0.00 3.62
247 248 1.337541 GCTCCGAGACGTTTTAGGGTT 60.338 52.381 0.00 0.00 0.00 4.11
248 249 0.245813 GCTCCGAGACGTTTTAGGGT 59.754 55.000 0.00 0.00 0.00 4.34
249 250 0.459759 GGCTCCGAGACGTTTTAGGG 60.460 60.000 0.00 0.00 0.00 3.53
250 251 0.245539 TGGCTCCGAGACGTTTTAGG 59.754 55.000 0.00 0.00 0.00 2.69
251 252 1.725164 GTTGGCTCCGAGACGTTTTAG 59.275 52.381 0.00 0.00 0.00 1.85
252 253 1.068895 TGTTGGCTCCGAGACGTTTTA 59.931 47.619 0.00 0.00 0.00 1.52
253 254 0.179067 TGTTGGCTCCGAGACGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
254 255 0.034896 ATGTTGGCTCCGAGACGTTT 59.965 50.000 0.00 0.00 0.00 3.60
255 256 0.892755 TATGTTGGCTCCGAGACGTT 59.107 50.000 0.00 0.00 0.00 3.99
256 257 0.456221 CTATGTTGGCTCCGAGACGT 59.544 55.000 0.00 0.00 0.00 4.34
257 258 0.738975 TCTATGTTGGCTCCGAGACG 59.261 55.000 0.00 0.00 0.00 4.18
258 259 3.570550 ACTATCTATGTTGGCTCCGAGAC 59.429 47.826 0.00 0.00 0.00 3.36
259 260 3.570125 CACTATCTATGTTGGCTCCGAGA 59.430 47.826 0.00 0.00 0.00 4.04
260 261 3.305676 CCACTATCTATGTTGGCTCCGAG 60.306 52.174 0.00 0.00 0.00 4.63
261 262 2.628178 CCACTATCTATGTTGGCTCCGA 59.372 50.000 0.00 0.00 0.00 4.55
262 263 2.628178 TCCACTATCTATGTTGGCTCCG 59.372 50.000 0.00 0.00 0.00 4.63
263 264 4.689612 TTCCACTATCTATGTTGGCTCC 57.310 45.455 0.00 0.00 0.00 4.70
264 265 5.221722 TGGATTCCACTATCTATGTTGGCTC 60.222 44.000 0.00 0.00 0.00 4.70
265 266 4.660303 TGGATTCCACTATCTATGTTGGCT 59.340 41.667 0.00 0.00 0.00 4.75
266 267 4.973168 TGGATTCCACTATCTATGTTGGC 58.027 43.478 0.00 0.00 0.00 4.52
267 268 6.425210 TCTGGATTCCACTATCTATGTTGG 57.575 41.667 0.00 0.00 0.00 3.77
268 269 5.931146 GCTCTGGATTCCACTATCTATGTTG 59.069 44.000 0.00 0.00 0.00 3.33
269 270 5.279206 CGCTCTGGATTCCACTATCTATGTT 60.279 44.000 0.00 0.00 0.00 2.71
270 271 4.219507 CGCTCTGGATTCCACTATCTATGT 59.780 45.833 0.00 0.00 0.00 2.29
271 272 4.381398 CCGCTCTGGATTCCACTATCTATG 60.381 50.000 0.00 0.00 42.00 2.23
272 273 3.766591 CCGCTCTGGATTCCACTATCTAT 59.233 47.826 0.00 0.00 42.00 1.98
273 274 3.157881 CCGCTCTGGATTCCACTATCTA 58.842 50.000 0.00 0.00 42.00 1.98
274 275 1.967066 CCGCTCTGGATTCCACTATCT 59.033 52.381 0.00 0.00 42.00 1.98
275 276 1.689273 ACCGCTCTGGATTCCACTATC 59.311 52.381 0.00 0.00 42.00 2.08
276 277 1.794714 ACCGCTCTGGATTCCACTAT 58.205 50.000 0.00 0.00 42.00 2.12
277 278 1.568504 AACCGCTCTGGATTCCACTA 58.431 50.000 0.00 0.00 42.00 2.74
278 279 0.693049 AAACCGCTCTGGATTCCACT 59.307 50.000 0.00 0.00 42.00 4.00
279 280 2.007608 GTAAACCGCTCTGGATTCCAC 58.992 52.381 0.00 0.00 42.00 4.02
280 281 1.404986 CGTAAACCGCTCTGGATTCCA 60.405 52.381 5.05 5.05 42.00 3.53
281 282 1.287425 CGTAAACCGCTCTGGATTCC 58.713 55.000 0.00 0.00 42.00 3.01
282 283 1.287425 CCGTAAACCGCTCTGGATTC 58.713 55.000 0.00 0.00 42.00 2.52
283 284 0.107848 CCCGTAAACCGCTCTGGATT 60.108 55.000 0.00 0.00 42.00 3.01
284 285 1.520666 CCCGTAAACCGCTCTGGAT 59.479 57.895 0.00 0.00 42.00 3.41
285 286 2.975536 CCCGTAAACCGCTCTGGA 59.024 61.111 0.00 0.00 42.00 3.86
286 287 2.818274 GCCCGTAAACCGCTCTGG 60.818 66.667 0.00 0.00 46.41 3.86
287 288 2.818274 GGCCCGTAAACCGCTCTG 60.818 66.667 0.00 0.00 34.38 3.35
288 289 3.001406 AGGCCCGTAAACCGCTCT 61.001 61.111 0.00 0.00 34.38 4.09
289 290 2.510918 GAGGCCCGTAAACCGCTC 60.511 66.667 0.00 0.00 34.38 5.03
290 291 4.091939 GGAGGCCCGTAAACCGCT 62.092 66.667 0.00 0.00 34.38 5.52
300 301 4.461431 CCGTAAAATATTTATGGGAGGCCC 59.539 45.833 0.00 0.00 45.71 5.80
301 302 5.182570 GTCCGTAAAATATTTATGGGAGGCC 59.817 44.000 16.95 0.00 33.06 5.19
302 303 5.182570 GGTCCGTAAAATATTTATGGGAGGC 59.817 44.000 16.95 8.32 33.06 4.70
303 304 5.410439 CGGTCCGTAAAATATTTATGGGAGG 59.590 44.000 16.95 6.53 33.06 4.30
304 305 5.410439 CCGGTCCGTAAAATATTTATGGGAG 59.590 44.000 11.06 10.57 33.06 4.30
305 306 5.307204 CCGGTCCGTAAAATATTTATGGGA 58.693 41.667 11.06 5.64 33.06 4.37
306 307 4.456566 CCCGGTCCGTAAAATATTTATGGG 59.543 45.833 11.06 3.37 33.06 4.00
307 308 4.083164 GCCCGGTCCGTAAAATATTTATGG 60.083 45.833 11.06 12.78 33.41 2.74
308 309 4.377635 CGCCCGGTCCGTAAAATATTTATG 60.378 45.833 11.06 0.00 0.00 1.90
309 310 3.747529 CGCCCGGTCCGTAAAATATTTAT 59.252 43.478 11.06 0.00 0.00 1.40
310 311 3.129871 CGCCCGGTCCGTAAAATATTTA 58.870 45.455 11.06 0.00 0.00 1.40
311 312 1.941975 CGCCCGGTCCGTAAAATATTT 59.058 47.619 11.06 0.00 0.00 1.40
312 313 1.585297 CGCCCGGTCCGTAAAATATT 58.415 50.000 11.06 0.00 0.00 1.28
313 314 0.249996 CCGCCCGGTCCGTAAAATAT 60.250 55.000 11.06 0.00 0.00 1.28
314 315 1.143620 CCGCCCGGTCCGTAAAATA 59.856 57.895 11.06 0.00 0.00 1.40
315 316 2.125024 CCGCCCGGTCCGTAAAAT 60.125 61.111 11.06 0.00 0.00 1.82
335 336 4.142643 GGCGGATTTACATGACGGTAAAAA 60.143 41.667 0.00 0.00 43.97 1.94
336 337 3.374678 GGCGGATTTACATGACGGTAAAA 59.625 43.478 0.00 0.00 43.97 1.52
337 338 2.937799 GGCGGATTTACATGACGGTAAA 59.062 45.455 0.00 0.00 44.63 2.01
338 339 2.093606 TGGCGGATTTACATGACGGTAA 60.094 45.455 0.00 0.00 0.00 2.85
339 340 1.481363 TGGCGGATTTACATGACGGTA 59.519 47.619 0.00 0.00 0.00 4.02
340 341 0.250793 TGGCGGATTTACATGACGGT 59.749 50.000 0.00 0.00 0.00 4.83
341 342 0.937304 CTGGCGGATTTACATGACGG 59.063 55.000 0.00 0.00 0.00 4.79
342 343 0.937304 CCTGGCGGATTTACATGACG 59.063 55.000 0.00 0.00 0.00 4.35
343 344 2.325583 TCCTGGCGGATTTACATGAC 57.674 50.000 0.00 0.00 33.30 3.06
344 345 3.278574 CTTTCCTGGCGGATTTACATGA 58.721 45.455 0.00 0.00 39.58 3.07
345 346 2.358898 CCTTTCCTGGCGGATTTACATG 59.641 50.000 0.00 0.00 39.58 3.21
346 347 2.654863 CCTTTCCTGGCGGATTTACAT 58.345 47.619 0.00 0.00 39.58 2.29
347 348 1.953311 GCCTTTCCTGGCGGATTTACA 60.953 52.381 0.00 0.00 43.74 2.41
348 349 0.738975 GCCTTTCCTGGCGGATTTAC 59.261 55.000 0.00 0.00 43.74 2.01
349 350 3.184736 GCCTTTCCTGGCGGATTTA 57.815 52.632 0.00 0.00 43.74 1.40
350 351 4.018409 GCCTTTCCTGGCGGATTT 57.982 55.556 0.00 0.00 43.74 2.17
368 369 0.532115 TAGTAAAACCTCGCCGGGAC 59.468 55.000 2.18 0.00 36.97 4.46
374 375 2.125685 GCGGATCTAGTAAAACCTCGC 58.874 52.381 0.00 0.00 0.00 5.03
379 380 5.459434 GCAACTCTAGCGGATCTAGTAAAAC 59.541 44.000 0.00 0.00 44.10 2.43
385 386 3.146066 AGAGCAACTCTAGCGGATCTAG 58.854 50.000 0.00 0.00 44.90 2.43
386 387 3.216187 AGAGCAACTCTAGCGGATCTA 57.784 47.619 0.00 0.00 39.28 1.98
387 388 2.065899 AGAGCAACTCTAGCGGATCT 57.934 50.000 0.00 0.00 39.28 2.75
392 393 1.751924 AGGGTTAGAGCAACTCTAGCG 59.248 52.381 10.96 0.00 46.63 4.26
401 402 4.024670 GGTCTTTCTAGAGGGTTAGAGCA 58.975 47.826 0.00 0.00 31.68 4.26
411 412 2.166664 CCTTGGACCGGTCTTTCTAGAG 59.833 54.545 32.52 18.20 0.00 2.43
412 413 2.176889 CCTTGGACCGGTCTTTCTAGA 58.823 52.381 32.52 10.84 0.00 2.43
416 417 2.265589 TTTCCTTGGACCGGTCTTTC 57.734 50.000 32.52 17.67 0.00 2.62
424 425 1.905637 ATGTCGGTTTTCCTTGGACC 58.094 50.000 0.00 0.00 37.95 4.46
444 445 3.118956 TCGTTTGGAGGTGCAAATGTTTT 60.119 39.130 13.77 0.00 0.00 2.43
465 466 8.674263 ACTGATCATATCTCCAAATTGTCTTC 57.326 34.615 0.00 0.00 0.00 2.87
483 484 8.243426 GTGCTAAAATTGATGGTAAACTGATCA 58.757 33.333 0.00 0.00 0.00 2.92
489 490 6.451393 TGTGGTGCTAAAATTGATGGTAAAC 58.549 36.000 0.00 0.00 0.00 2.01
520 521 9.333724 TGGAGGATTTAATTAATTTCGTACTCC 57.666 33.333 20.32 20.32 0.00 3.85
536 537 3.013921 GCGTGGTTTCATGGAGGATTTA 58.986 45.455 0.00 0.00 0.00 1.40
540 541 1.002624 GGCGTGGTTTCATGGAGGA 60.003 57.895 0.00 0.00 0.00 3.71
569 570 4.437255 GGCGATTAAACCCGTTCGTTATTT 60.437 41.667 0.00 0.00 34.24 1.40
580 581 1.342555 GTTTTGCGGCGATTAAACCC 58.657 50.000 12.98 0.00 0.00 4.11
593 594 4.337060 GGGTCGCGGTGGTTTTGC 62.337 66.667 6.13 0.00 0.00 3.68
595 596 4.550697 ACGGGTCGCGGTGGTTTT 62.551 61.111 14.28 0.00 0.00 2.43
738 750 1.546998 GGGTTTTGTTGGAGACGGGAT 60.547 52.381 0.00 0.00 0.00 3.85
819 840 4.451150 TGTGGAGCCGACGATGCC 62.451 66.667 0.00 0.00 0.00 4.40
984 1031 1.699054 CCATCTCATCCGCTTCCCCA 61.699 60.000 0.00 0.00 0.00 4.96
985 1032 1.072159 CCATCTCATCCGCTTCCCC 59.928 63.158 0.00 0.00 0.00 4.81
1045 1096 2.046507 GAGCAGCCACCACCTCAG 60.047 66.667 0.00 0.00 0.00 3.35
1196 1256 3.103742 GAGAGTTCAATCTGAGGGGAGT 58.896 50.000 0.00 0.00 0.00 3.85
1198 1258 3.102972 CAGAGAGTTCAATCTGAGGGGA 58.897 50.000 0.00 0.00 44.68 4.81
1201 1261 2.170187 CCCCAGAGAGTTCAATCTGAGG 59.830 54.545 3.83 0.00 44.68 3.86
1289 1357 2.948720 GCGAACTCCTGCTCCCAGT 61.949 63.158 0.00 0.00 37.38 4.00
1366 1454 7.931948 ACAGGATAAAATCATAACGGTAAGAGG 59.068 37.037 0.00 0.00 0.00 3.69
1396 1502 0.980754 ATGTCACGGGCTCCCATGTA 60.981 55.000 5.70 0.00 35.37 2.29
1397 1503 1.852157 AATGTCACGGGCTCCCATGT 61.852 55.000 5.70 0.00 35.37 3.21
1398 1504 1.077501 AATGTCACGGGCTCCCATG 60.078 57.895 5.70 0.00 35.37 3.66
1551 1657 0.764890 ACTGCTAGGTGAAGTGCCAA 59.235 50.000 0.00 0.00 0.00 4.52
1562 1668 1.271102 GGGCGAGATTCTACTGCTAGG 59.729 57.143 0.00 0.00 0.00 3.02
1568 1675 0.106619 AGACCGGGCGAGATTCTACT 60.107 55.000 6.32 0.00 0.00 2.57
1584 1691 0.457853 TACGAGAATGTGCGCCAGAC 60.458 55.000 4.18 0.00 0.00 3.51
1585 1692 0.179137 CTACGAGAATGTGCGCCAGA 60.179 55.000 4.18 0.00 0.00 3.86
1587 1694 1.153647 CCTACGAGAATGTGCGCCA 60.154 57.895 4.18 2.31 0.00 5.69
1684 1792 3.121030 GCGCGCATCTGGTTGAGT 61.121 61.111 29.10 0.00 0.00 3.41
1835 1943 1.635663 CGTCAACCCCGATCAAGCAC 61.636 60.000 0.00 0.00 0.00 4.40
1838 1946 0.321298 AACCGTCAACCCCGATCAAG 60.321 55.000 0.00 0.00 0.00 3.02
1845 1953 0.594602 GCTACAAAACCGTCAACCCC 59.405 55.000 0.00 0.00 0.00 4.95
1879 1987 0.457851 CCGAAACACTGCCCACAAAA 59.542 50.000 0.00 0.00 0.00 2.44
2001 2109 1.615392 ACAGCCACCATTTCAAGCTTC 59.385 47.619 0.00 0.00 0.00 3.86
2114 2232 4.036734 CAGCACACATCCACCAATTATACC 59.963 45.833 0.00 0.00 0.00 2.73
2162 2280 0.107643 TGACTGCGACACATTGGGAA 59.892 50.000 0.00 0.00 0.00 3.97
2344 2474 4.952262 TGTGTATGCTCAAAGAGAATGC 57.048 40.909 0.00 0.00 32.08 3.56
2365 2495 5.455872 TCGATGTTACTTCTCTTAGGGGAT 58.544 41.667 0.00 0.00 0.00 3.85
2366 2496 4.863548 TCGATGTTACTTCTCTTAGGGGA 58.136 43.478 0.00 0.00 0.00 4.81
2462 2594 4.454728 TCCAACTTGCAAAAGATATGCC 57.545 40.909 0.00 0.00 43.16 4.40
2600 2733 7.809331 CCCATGATTATGATTGATTGGTAAACG 59.191 37.037 0.00 0.00 36.36 3.60
2802 2935 1.613836 AGGGCTCAGAGCAAAAACAG 58.386 50.000 24.09 0.00 44.75 3.16
2820 2953 7.013274 TGTCAGTTTTTGATCAGTTAAGGGAAG 59.987 37.037 0.00 0.00 38.29 3.46
2869 3002 3.911661 AGACATCTGAAAAGTTGCTGC 57.088 42.857 0.00 0.00 0.00 5.25
3304 3437 1.480954 TCCCGTGATGGACTTTAGAGC 59.519 52.381 0.00 0.00 42.00 4.09
3622 3755 9.180678 GTATGTTGTGTTTCCTCTGTTAAAATG 57.819 33.333 0.00 0.00 0.00 2.32
3645 3778 6.126863 TCAATGTCTTTCACCTTCCAGTAT 57.873 37.500 0.00 0.00 0.00 2.12
3677 3810 5.633830 ACAATGACCATGTGATCTTTGTC 57.366 39.130 13.14 3.52 38.24 3.18
3708 3841 3.328535 AACATTCCAACCTCCTTTGGT 57.671 42.857 1.94 0.00 45.60 3.67
3801 3934 3.057315 GGGATTGCAAATCGACCATATGG 60.057 47.826 20.68 20.68 42.17 2.74
4025 4161 7.839907 TGTTCCCAGAAAATGATGGAATAAAG 58.160 34.615 0.00 0.00 39.02 1.85
4039 4175 0.893270 CCGTGCCATGTTCCCAGAAA 60.893 55.000 0.00 0.00 0.00 2.52
4082 4218 2.079170 TTGTTTTCCTGTGGCCATGA 57.921 45.000 9.72 3.14 0.00 3.07
4118 4254 4.682778 AGACAAGTGCTAGTTGTGGTTA 57.317 40.909 12.23 0.00 41.47 2.85
4153 4290 1.474879 GACCGAGAAGGGAAGAGTGAG 59.525 57.143 0.00 0.00 46.96 3.51
4191 4332 6.491403 ACAAATGAACTAATGCTTTCCTGAGT 59.509 34.615 0.00 0.00 0.00 3.41
4258 4399 7.746475 GTGCATTTCTATTATCCTTTGCGATAC 59.254 37.037 0.00 0.00 0.00 2.24
4268 4409 6.429385 CCTCTTCTGGTGCATTTCTATTATCC 59.571 42.308 0.00 0.00 0.00 2.59
4567 4709 3.643320 CTCTATGTACCTGGGATTGCTGA 59.357 47.826 0.00 0.00 0.00 4.26
4573 4715 4.357325 CCTATGCTCTATGTACCTGGGAT 58.643 47.826 0.00 0.00 0.00 3.85
4592 4734 2.597578 TATCAGTATGCGCCTCCCTA 57.402 50.000 4.18 0.00 34.76 3.53
4639 4781 2.736721 CGTTGGACTGTAATGTCACCTG 59.263 50.000 0.00 0.00 38.61 4.00
4716 4858 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4717 4859 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
4718 4860 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4733 4875 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
4734 4876 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
4735 4877 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
4736 4878 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
4750 4892 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
4751 4893 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
4763 4905 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4764 4906 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
4765 4907 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
4766 4908 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
4767 4909 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
4768 4910 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
4769 4911 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
4770 4912 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4771 4913 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4774 4916 9.812347 TGATACTCCCTCCGTAAACTAATATAA 57.188 33.333 0.00 0.00 0.00 0.98
4775 4917 9.812347 TTGATACTCCCTCCGTAAACTAATATA 57.188 33.333 0.00 0.00 0.00 0.86
4776 4918 8.716674 TTGATACTCCCTCCGTAAACTAATAT 57.283 34.615 0.00 0.00 0.00 1.28
4777 4919 8.537728 TTTGATACTCCCTCCGTAAACTAATA 57.462 34.615 0.00 0.00 0.00 0.98
4778 4920 7.343833 TCTTTGATACTCCCTCCGTAAACTAAT 59.656 37.037 0.00 0.00 0.00 1.73
4779 4921 6.664816 TCTTTGATACTCCCTCCGTAAACTAA 59.335 38.462 0.00 0.00 0.00 2.24
4780 4922 6.189859 TCTTTGATACTCCCTCCGTAAACTA 58.810 40.000 0.00 0.00 0.00 2.24
4781 4923 5.021458 TCTTTGATACTCCCTCCGTAAACT 58.979 41.667 0.00 0.00 0.00 2.66
4782 4924 5.334724 TCTTTGATACTCCCTCCGTAAAC 57.665 43.478 0.00 0.00 0.00 2.01
4783 4925 6.555463 ATTCTTTGATACTCCCTCCGTAAA 57.445 37.500 0.00 0.00 0.00 2.01
4784 4926 5.221185 CGATTCTTTGATACTCCCTCCGTAA 60.221 44.000 0.00 0.00 0.00 3.18
4785 4927 4.277672 CGATTCTTTGATACTCCCTCCGTA 59.722 45.833 0.00 0.00 0.00 4.02
4786 4928 3.068307 CGATTCTTTGATACTCCCTCCGT 59.932 47.826 0.00 0.00 0.00 4.69
4787 4929 3.318275 TCGATTCTTTGATACTCCCTCCG 59.682 47.826 0.00 0.00 0.00 4.63
4788 4930 4.939052 TCGATTCTTTGATACTCCCTCC 57.061 45.455 0.00 0.00 0.00 4.30
4789 4931 6.150396 TCTTCGATTCTTTGATACTCCCTC 57.850 41.667 0.00 0.00 0.00 4.30
4790 4932 6.098982 ACATCTTCGATTCTTTGATACTCCCT 59.901 38.462 0.00 0.00 0.00 4.20
4791 4933 6.284459 ACATCTTCGATTCTTTGATACTCCC 58.716 40.000 0.00 0.00 0.00 4.30
4792 4934 7.492669 TGAACATCTTCGATTCTTTGATACTCC 59.507 37.037 0.00 0.00 0.00 3.85
4793 4935 8.412608 TGAACATCTTCGATTCTTTGATACTC 57.587 34.615 0.00 0.00 0.00 2.59
4794 4936 8.253810 TCTGAACATCTTCGATTCTTTGATACT 58.746 33.333 0.00 0.00 0.00 2.12
4795 4937 8.412608 TCTGAACATCTTCGATTCTTTGATAC 57.587 34.615 0.00 0.00 0.00 2.24
4796 4938 7.223582 GCTCTGAACATCTTCGATTCTTTGATA 59.776 37.037 0.00 0.00 0.00 2.15
4797 4939 6.036953 GCTCTGAACATCTTCGATTCTTTGAT 59.963 38.462 0.00 0.00 0.00 2.57
4798 4940 5.349817 GCTCTGAACATCTTCGATTCTTTGA 59.650 40.000 0.00 0.00 0.00 2.69
4799 4941 5.121298 TGCTCTGAACATCTTCGATTCTTTG 59.879 40.000 0.00 0.00 0.00 2.77
4850 4992 8.760980 ATAATTATGCCCAAGCTTACAAACTA 57.239 30.769 0.00 0.00 40.80 2.24
4961 5103 4.335315 TGTGATGTCAGTTCAACAGAAACC 59.665 41.667 0.00 0.00 0.00 3.27
5023 5165 2.205074 CTACATCTAAAGCCCTGCACG 58.795 52.381 0.00 0.00 0.00 5.34
5120 5262 9.574516 ACTTTCATTCAGAAATAACCAACTAGT 57.425 29.630 0.00 0.00 44.75 2.57
5125 5267 9.748708 CTCAAACTTTCATTCAGAAATAACCAA 57.251 29.630 0.00 0.00 44.75 3.67
5129 5271 9.467258 CAAGCTCAAACTTTCATTCAGAAATAA 57.533 29.630 0.00 0.00 44.75 1.40
5334 5478 5.874810 TCTTGTGTAAACAGCCATATGAGAC 59.125 40.000 3.65 0.00 0.00 3.36
5387 5531 6.894654 TCACTGAAATCTGAGTCTATCCTCTT 59.105 38.462 0.00 0.00 32.50 2.85
5399 5543 3.565482 GGTTGTTGCTCACTGAAATCTGA 59.435 43.478 0.00 0.00 0.00 3.27
5402 5546 3.988379 TGGTTGTTGCTCACTGAAATC 57.012 42.857 0.00 0.00 0.00 2.17
5479 5623 9.832445 CTCCCTTTGTAAACTAATATAAGAGCA 57.168 33.333 0.00 0.00 0.00 4.26
5480 5624 9.833917 ACTCCCTTTGTAAACTAATATAAGAGC 57.166 33.333 0.00 0.00 0.00 4.09
5502 5646 0.245813 GTGGTGAACGGGAGTACTCC 59.754 60.000 30.72 30.72 46.69 3.85
5503 5647 3.808583 GTGGTGAACGGGAGTACTC 57.191 57.895 14.87 14.87 46.69 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.