Multiple sequence alignment - TraesCS7B01G082300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G082300 chr7B 100.000 3591 0 0 1 3591 92958386 92961976 0.000000e+00 6632.0
1 TraesCS7B01G082300 chr7B 88.157 1503 154 16 1038 2530 697033940 697035428 0.000000e+00 1768.0
2 TraesCS7B01G082300 chr7B 83.897 1714 215 40 1066 2748 697615843 697614160 0.000000e+00 1580.0
3 TraesCS7B01G082300 chr7B 84.587 1609 201 32 1117 2695 697120269 697118678 0.000000e+00 1554.0
4 TraesCS7B01G082300 chr7B 83.384 1649 233 28 1115 2742 697422832 697424460 0.000000e+00 1489.0
5 TraesCS7B01G082300 chr7B 83.122 1659 230 31 1117 2748 695502305 695500670 0.000000e+00 1467.0
6 TraesCS7B01G082300 chr7B 82.190 1662 237 36 1117 2745 695908482 695910117 0.000000e+00 1375.0
7 TraesCS7B01G082300 chr7B 99.125 343 2 1 1 343 212863374 212863033 1.830000e-172 616.0
8 TraesCS7B01G082300 chr7B 83.773 493 55 13 2614 3088 685050170 685050655 9.150000e-121 444.0
9 TraesCS7B01G082300 chr7B 86.052 423 45 9 3171 3591 695491899 695491489 3.290000e-120 442.0
10 TraesCS7B01G082300 chr7B 85.514 428 50 9 3166 3591 697538745 697539162 1.530000e-118 436.0
11 TraesCS7B01G082300 chr7B 84.977 426 56 6 3166 3591 694230405 694230822 3.310000e-115 425.0
12 TraesCS7B01G082300 chr7B 85.246 427 48 8 3166 3591 698230959 698230547 3.310000e-115 425.0
13 TraesCS7B01G082300 chr7B 83.951 243 24 7 3249 3477 694268216 694268457 6.040000e-53 219.0
14 TraesCS7B01G082300 chr7B 87.075 147 17 2 3201 3346 695290492 695290637 7.980000e-37 165.0
15 TraesCS7B01G082300 chr7B 90.141 71 6 1 3521 3591 685023784 685023853 1.370000e-14 91.6
16 TraesCS7B01G082300 chr7A 96.517 2096 69 4 1021 3116 130383362 130385453 0.000000e+00 3463.0
17 TraesCS7B01G082300 chr7A 95.426 481 18 3 3112 3591 130385559 130386036 0.000000e+00 763.0
18 TraesCS7B01G082300 chr7A 88.796 357 26 8 2745 3087 700159108 700158752 3.310000e-115 425.0
19 TraesCS7B01G082300 chr7A 90.301 299 24 3 2795 3088 225972127 225972425 1.560000e-103 387.0
20 TraesCS7B01G082300 chr7A 95.918 49 2 0 2745 2793 700030204 700030252 2.970000e-11 80.5
21 TraesCS7B01G082300 chr7D 96.880 1186 34 1 1236 2418 131618956 131620141 0.000000e+00 1982.0
22 TraesCS7B01G082300 chr7D 84.819 1436 192 22 1115 2530 608727515 608728944 0.000000e+00 1421.0
23 TraesCS7B01G082300 chr7D 94.242 712 25 4 2413 3116 131620219 131620922 0.000000e+00 1074.0
24 TraesCS7B01G082300 chr7D 87.941 680 76 1 1090 1769 608105180 608104507 0.000000e+00 797.0
25 TraesCS7B01G082300 chr7D 94.239 486 21 6 3110 3591 131621026 131621508 0.000000e+00 736.0
26 TraesCS7B01G082300 chr7D 77.445 1237 227 38 1117 2316 609467931 609466710 0.000000e+00 691.0
27 TraesCS7B01G082300 chr7D 74.585 1747 318 70 1066 2748 609947315 609945631 0.000000e+00 651.0
28 TraesCS7B01G082300 chr7D 77.405 1102 210 30 1242 2316 609412548 609411459 1.420000e-173 619.0
29 TraesCS7B01G082300 chr7D 74.356 1669 310 60 1146 2748 607931247 607932863 1.430000e-168 603.0
30 TraesCS7B01G082300 chr7D 86.417 427 47 8 3166 3591 610654234 610654650 1.180000e-124 457.0
31 TraesCS7B01G082300 chr7D 84.419 430 52 11 3166 3591 608102386 608101968 3.340000e-110 409.0
32 TraesCS7B01G082300 chr7D 87.709 358 30 4 2745 3088 609945590 609945233 4.320000e-109 405.0
33 TraesCS7B01G082300 chr7D 96.875 224 7 0 1021 1244 131610544 131610767 3.380000e-100 375.0
34 TraesCS7B01G082300 chr7D 89.298 299 26 4 2795 3088 83293007 83292710 1.570000e-98 370.0
35 TraesCS7B01G082300 chr6B 88.525 671 77 0 342 1012 571003058 571003728 0.000000e+00 813.0
36 TraesCS7B01G082300 chr6B 87.332 671 83 2 342 1011 665882982 665883651 0.000000e+00 767.0
37 TraesCS7B01G082300 chr6B 99.417 343 2 0 1 343 139566624 139566966 1.090000e-174 623.0
38 TraesCS7B01G082300 chrUn 87.573 684 68 7 1087 1769 77779850 77780517 0.000000e+00 776.0
39 TraesCS7B01G082300 chrUn 85.986 421 49 7 3172 3591 77782592 77783003 3.290000e-120 442.0
40 TraesCS7B01G082300 chr3D 86.438 671 88 3 342 1010 515685022 515685691 0.000000e+00 732.0
41 TraesCS7B01G082300 chr2A 84.844 673 97 5 342 1011 67963890 67964560 0.000000e+00 673.0
42 TraesCS7B01G082300 chr2A 86.923 520 65 3 492 1010 36850234 36850751 6.680000e-162 580.0
43 TraesCS7B01G082300 chr1A 83.433 670 111 0 342 1011 514252102 514251433 1.090000e-174 623.0
44 TraesCS7B01G082300 chr3B 99.125 343 2 1 1 343 486575653 486575994 1.830000e-172 616.0
45 TraesCS7B01G082300 chr2B 99.125 343 2 1 1 343 8870321 8869980 1.830000e-172 616.0
46 TraesCS7B01G082300 chr2B 99.125 343 2 1 1 343 78029522 78029181 1.830000e-172 616.0
47 TraesCS7B01G082300 chr1B 99.125 343 2 1 1 343 29256958 29256617 1.830000e-172 616.0
48 TraesCS7B01G082300 chr1B 99.125 343 2 1 1 343 297168120 297168461 1.830000e-172 616.0
49 TraesCS7B01G082300 chr1B 99.120 341 3 0 1 341 298922913 298923253 6.590000e-172 614.0
50 TraesCS7B01G082300 chr1B 98.555 346 4 1 1 346 669039240 669038896 8.520000e-171 610.0
51 TraesCS7B01G082300 chr6D 85.567 582 80 4 342 921 266400124 266399545 1.100000e-169 606.0
52 TraesCS7B01G082300 chr5B 81.278 673 118 7 342 1010 610328643 610327975 4.080000e-149 538.0
53 TraesCS7B01G082300 chr5B 78.698 676 134 9 342 1012 670788870 670789540 3.290000e-120 442.0
54 TraesCS7B01G082300 chr2D 81.157 674 121 6 342 1012 75695766 75695096 1.470000e-148 536.0
55 TraesCS7B01G082300 chr6A 89.632 299 26 3 2795 3088 252108675 252108377 3.380000e-100 375.0
56 TraesCS7B01G082300 chr5D 90.775 271 20 3 2795 3060 549563442 549563712 1.230000e-94 357.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G082300 chr7B 92958386 92961976 3590 False 6632 6632 100.000000 1 3591 1 chr7B.!!$F1 3590
1 TraesCS7B01G082300 chr7B 697033940 697035428 1488 False 1768 1768 88.157000 1038 2530 1 chr7B.!!$F8 1492
2 TraesCS7B01G082300 chr7B 697614160 697615843 1683 True 1580 1580 83.897000 1066 2748 1 chr7B.!!$R5 1682
3 TraesCS7B01G082300 chr7B 697118678 697120269 1591 True 1554 1554 84.587000 1117 2695 1 chr7B.!!$R4 1578
4 TraesCS7B01G082300 chr7B 697422832 697424460 1628 False 1489 1489 83.384000 1115 2742 1 chr7B.!!$F9 1627
5 TraesCS7B01G082300 chr7B 695500670 695502305 1635 True 1467 1467 83.122000 1117 2748 1 chr7B.!!$R3 1631
6 TraesCS7B01G082300 chr7B 695908482 695910117 1635 False 1375 1375 82.190000 1117 2745 1 chr7B.!!$F7 1628
7 TraesCS7B01G082300 chr7A 130383362 130386036 2674 False 2113 3463 95.971500 1021 3591 2 chr7A.!!$F3 2570
8 TraesCS7B01G082300 chr7D 608727515 608728944 1429 False 1421 1421 84.819000 1115 2530 1 chr7D.!!$F3 1415
9 TraesCS7B01G082300 chr7D 131618956 131621508 2552 False 1264 1982 95.120333 1236 3591 3 chr7D.!!$F5 2355
10 TraesCS7B01G082300 chr7D 609466710 609467931 1221 True 691 691 77.445000 1117 2316 1 chr7D.!!$R3 1199
11 TraesCS7B01G082300 chr7D 609411459 609412548 1089 True 619 619 77.405000 1242 2316 1 chr7D.!!$R2 1074
12 TraesCS7B01G082300 chr7D 607931247 607932863 1616 False 603 603 74.356000 1146 2748 1 chr7D.!!$F2 1602
13 TraesCS7B01G082300 chr7D 608101968 608105180 3212 True 603 797 86.180000 1090 3591 2 chr7D.!!$R4 2501
14 TraesCS7B01G082300 chr7D 609945233 609947315 2082 True 528 651 81.147000 1066 3088 2 chr7D.!!$R5 2022
15 TraesCS7B01G082300 chr6B 571003058 571003728 670 False 813 813 88.525000 342 1012 1 chr6B.!!$F2 670
16 TraesCS7B01G082300 chr6B 665882982 665883651 669 False 767 767 87.332000 342 1011 1 chr6B.!!$F3 669
17 TraesCS7B01G082300 chrUn 77779850 77783003 3153 False 609 776 86.779500 1087 3591 2 chrUn.!!$F1 2504
18 TraesCS7B01G082300 chr3D 515685022 515685691 669 False 732 732 86.438000 342 1010 1 chr3D.!!$F1 668
19 TraesCS7B01G082300 chr2A 67963890 67964560 670 False 673 673 84.844000 342 1011 1 chr2A.!!$F2 669
20 TraesCS7B01G082300 chr2A 36850234 36850751 517 False 580 580 86.923000 492 1010 1 chr2A.!!$F1 518
21 TraesCS7B01G082300 chr1A 514251433 514252102 669 True 623 623 83.433000 342 1011 1 chr1A.!!$R1 669
22 TraesCS7B01G082300 chr6D 266399545 266400124 579 True 606 606 85.567000 342 921 1 chr6D.!!$R1 579
23 TraesCS7B01G082300 chr5B 610327975 610328643 668 True 538 538 81.278000 342 1010 1 chr5B.!!$R1 668
24 TraesCS7B01G082300 chr5B 670788870 670789540 670 False 442 442 78.698000 342 1012 1 chr5B.!!$F1 670
25 TraesCS7B01G082300 chr2D 75695096 75695766 670 True 536 536 81.157000 342 1012 1 chr2D.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 603 1.276421 GCGGCTGTGATATGTAGGGAT 59.724 52.381 0.0 0.0 0.00 3.85 F
1325 1341 1.151677 TTCCACCCAGCCCTAACCT 60.152 57.895 0.0 0.0 0.00 3.50 F
1372 1411 1.812093 CGCCGCCGATTTCACCTTA 60.812 57.895 0.0 0.0 36.29 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2204 0.512952 GCAAGTACCTCTGTGTTGCG 59.487 55.000 0.0 0.0 36.58 4.85 R
2563 2794 1.590932 CAGATTTCCATCAGGGCTCG 58.409 55.000 0.0 0.0 36.21 5.03 R
3331 4589 1.077212 GCTGGTGATGTCATGGGCT 60.077 57.895 0.0 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.948631 AGTTACAGGAACATGTATAAGTCATG 57.051 34.615 0.00 2.95 45.41 3.07
27 28 8.758829 AGTTACAGGAACATGTATAAGTCATGA 58.241 33.333 14.21 0.00 43.47 3.07
28 29 9.378551 GTTACAGGAACATGTATAAGTCATGAA 57.621 33.333 14.21 4.02 43.47 2.57
29 30 9.599866 TTACAGGAACATGTATAAGTCATGAAG 57.400 33.333 14.21 0.00 43.47 3.02
30 31 7.851228 ACAGGAACATGTATAAGTCATGAAGA 58.149 34.615 14.21 0.00 43.47 2.87
31 32 8.321353 ACAGGAACATGTATAAGTCATGAAGAA 58.679 33.333 14.21 0.00 43.47 2.52
32 33 9.166173 CAGGAACATGTATAAGTCATGAAGAAA 57.834 33.333 0.00 0.00 43.47 2.52
33 34 9.388506 AGGAACATGTATAAGTCATGAAGAAAG 57.611 33.333 0.00 0.00 43.47 2.62
34 35 8.125448 GGAACATGTATAAGTCATGAAGAAAGC 58.875 37.037 0.00 0.00 43.47 3.51
35 36 8.565896 AACATGTATAAGTCATGAAGAAAGCA 57.434 30.769 0.00 0.00 43.47 3.91
36 37 8.565896 ACATGTATAAGTCATGAAGAAAGCAA 57.434 30.769 11.92 0.00 43.47 3.91
37 38 9.182214 ACATGTATAAGTCATGAAGAAAGCAAT 57.818 29.630 11.92 0.00 43.47 3.56
40 41 8.830580 TGTATAAGTCATGAAGAAAGCAATAGC 58.169 33.333 0.00 0.00 42.56 2.97
41 42 7.870509 ATAAGTCATGAAGAAAGCAATAGCA 57.129 32.000 0.00 0.00 45.49 3.49
42 43 6.579666 AAGTCATGAAGAAAGCAATAGCAA 57.420 33.333 0.00 0.00 45.49 3.91
43 44 5.947443 AGTCATGAAGAAAGCAATAGCAAC 58.053 37.500 0.00 0.00 45.49 4.17
44 45 5.474532 AGTCATGAAGAAAGCAATAGCAACA 59.525 36.000 0.00 0.00 45.49 3.33
45 46 6.152323 AGTCATGAAGAAAGCAATAGCAACAT 59.848 34.615 0.00 0.00 45.49 2.71
46 47 7.337689 AGTCATGAAGAAAGCAATAGCAACATA 59.662 33.333 0.00 0.00 45.49 2.29
47 48 7.430502 GTCATGAAGAAAGCAATAGCAACATAC 59.569 37.037 0.00 0.00 45.49 2.39
48 49 7.337689 TCATGAAGAAAGCAATAGCAACATACT 59.662 33.333 0.00 0.00 45.49 2.12
49 50 8.615211 CATGAAGAAAGCAATAGCAACATACTA 58.385 33.333 0.00 0.00 45.49 1.82
50 51 8.560355 TGAAGAAAGCAATAGCAACATACTAA 57.440 30.769 0.00 0.00 45.49 2.24
51 52 9.008965 TGAAGAAAGCAATAGCAACATACTAAA 57.991 29.630 0.00 0.00 45.49 1.85
52 53 9.278734 GAAGAAAGCAATAGCAACATACTAAAC 57.721 33.333 0.00 0.00 45.49 2.01
53 54 7.464358 AGAAAGCAATAGCAACATACTAAACG 58.536 34.615 0.00 0.00 45.49 3.60
54 55 6.978343 AAGCAATAGCAACATACTAAACGA 57.022 33.333 0.00 0.00 45.49 3.85
55 56 7.553881 AAGCAATAGCAACATACTAAACGAT 57.446 32.000 0.00 0.00 45.49 3.73
56 57 7.178712 AGCAATAGCAACATACTAAACGATC 57.821 36.000 0.00 0.00 45.49 3.69
57 58 6.761242 AGCAATAGCAACATACTAAACGATCA 59.239 34.615 0.00 0.00 45.49 2.92
58 59 7.279981 AGCAATAGCAACATACTAAACGATCAA 59.720 33.333 0.00 0.00 45.49 2.57
59 60 7.908082 GCAATAGCAACATACTAAACGATCAAA 59.092 33.333 0.00 0.00 41.58 2.69
60 61 9.935682 CAATAGCAACATACTAAACGATCAAAT 57.064 29.630 0.00 0.00 0.00 2.32
61 62 9.935682 AATAGCAACATACTAAACGATCAAATG 57.064 29.630 0.00 0.00 0.00 2.32
62 63 6.258160 AGCAACATACTAAACGATCAAATGC 58.742 36.000 0.00 0.00 0.00 3.56
63 64 6.094048 AGCAACATACTAAACGATCAAATGCT 59.906 34.615 0.00 0.00 33.45 3.79
64 65 7.279981 AGCAACATACTAAACGATCAAATGCTA 59.720 33.333 0.00 0.00 36.25 3.49
65 66 7.908082 GCAACATACTAAACGATCAAATGCTAA 59.092 33.333 0.00 0.00 0.00 3.09
66 67 9.425893 CAACATACTAAACGATCAAATGCTAAG 57.574 33.333 0.00 0.00 0.00 2.18
67 68 7.630924 ACATACTAAACGATCAAATGCTAAGC 58.369 34.615 0.00 0.00 0.00 3.09
68 69 7.495934 ACATACTAAACGATCAAATGCTAAGCT 59.504 33.333 0.00 0.00 0.00 3.74
69 70 8.978539 CATACTAAACGATCAAATGCTAAGCTA 58.021 33.333 0.00 0.00 0.00 3.32
70 71 7.843490 ACTAAACGATCAAATGCTAAGCTAA 57.157 32.000 0.00 0.00 0.00 3.09
71 72 7.685594 ACTAAACGATCAAATGCTAAGCTAAC 58.314 34.615 0.00 0.00 0.00 2.34
72 73 4.778842 ACGATCAAATGCTAAGCTAACG 57.221 40.909 0.00 0.00 0.00 3.18
73 74 3.555956 ACGATCAAATGCTAAGCTAACGG 59.444 43.478 0.00 0.00 0.00 4.44
74 75 3.802139 CGATCAAATGCTAAGCTAACGGA 59.198 43.478 0.00 0.00 0.00 4.69
75 76 4.270084 CGATCAAATGCTAAGCTAACGGAA 59.730 41.667 0.00 0.00 0.00 4.30
76 77 5.050091 CGATCAAATGCTAAGCTAACGGAAT 60.050 40.000 0.00 0.00 0.00 3.01
77 78 5.484173 TCAAATGCTAAGCTAACGGAATG 57.516 39.130 0.00 0.00 0.00 2.67
78 79 4.335315 TCAAATGCTAAGCTAACGGAATGG 59.665 41.667 0.00 0.00 0.00 3.16
79 80 2.325583 TGCTAAGCTAACGGAATGGG 57.674 50.000 0.00 0.00 0.00 4.00
80 81 1.557832 TGCTAAGCTAACGGAATGGGT 59.442 47.619 0.00 0.00 0.00 4.51
81 82 2.210961 GCTAAGCTAACGGAATGGGTC 58.789 52.381 0.00 0.00 0.00 4.46
82 83 2.419574 GCTAAGCTAACGGAATGGGTCA 60.420 50.000 0.00 0.00 0.00 4.02
83 84 2.871096 AAGCTAACGGAATGGGTCAA 57.129 45.000 0.00 0.00 0.00 3.18
84 85 2.403252 AGCTAACGGAATGGGTCAAG 57.597 50.000 0.00 0.00 0.00 3.02
85 86 1.628846 AGCTAACGGAATGGGTCAAGT 59.371 47.619 0.00 0.00 0.00 3.16
86 87 2.007608 GCTAACGGAATGGGTCAAGTC 58.992 52.381 0.00 0.00 0.00 3.01
87 88 2.614481 GCTAACGGAATGGGTCAAGTCA 60.614 50.000 0.00 0.00 0.00 3.41
88 89 2.649531 AACGGAATGGGTCAAGTCAA 57.350 45.000 0.00 0.00 0.00 3.18
89 90 2.879103 ACGGAATGGGTCAAGTCAAT 57.121 45.000 0.00 0.00 0.00 2.57
90 91 2.711542 ACGGAATGGGTCAAGTCAATC 58.288 47.619 0.00 0.00 0.00 2.67
91 92 2.039746 ACGGAATGGGTCAAGTCAATCA 59.960 45.455 0.00 0.00 0.00 2.57
92 93 2.420022 CGGAATGGGTCAAGTCAATCAC 59.580 50.000 0.00 0.00 0.00 3.06
93 94 3.420893 GGAATGGGTCAAGTCAATCACA 58.579 45.455 0.00 0.00 0.00 3.58
94 95 4.019174 GGAATGGGTCAAGTCAATCACAT 58.981 43.478 0.00 0.00 0.00 3.21
95 96 4.096984 GGAATGGGTCAAGTCAATCACATC 59.903 45.833 0.00 0.00 0.00 3.06
96 97 3.786368 TGGGTCAAGTCAATCACATCA 57.214 42.857 0.00 0.00 0.00 3.07
97 98 4.305539 TGGGTCAAGTCAATCACATCAT 57.694 40.909 0.00 0.00 0.00 2.45
98 99 4.665451 TGGGTCAAGTCAATCACATCATT 58.335 39.130 0.00 0.00 0.00 2.57
99 100 4.701651 TGGGTCAAGTCAATCACATCATTC 59.298 41.667 0.00 0.00 0.00 2.67
100 101 4.946157 GGGTCAAGTCAATCACATCATTCT 59.054 41.667 0.00 0.00 0.00 2.40
101 102 5.065731 GGGTCAAGTCAATCACATCATTCTC 59.934 44.000 0.00 0.00 0.00 2.87
102 103 5.065731 GGTCAAGTCAATCACATCATTCTCC 59.934 44.000 0.00 0.00 0.00 3.71
103 104 5.879223 GTCAAGTCAATCACATCATTCTCCT 59.121 40.000 0.00 0.00 0.00 3.69
104 105 7.044181 GTCAAGTCAATCACATCATTCTCCTA 58.956 38.462 0.00 0.00 0.00 2.94
105 106 7.550551 GTCAAGTCAATCACATCATTCTCCTAA 59.449 37.037 0.00 0.00 0.00 2.69
106 107 8.270030 TCAAGTCAATCACATCATTCTCCTAAT 58.730 33.333 0.00 0.00 0.00 1.73
107 108 8.343366 CAAGTCAATCACATCATTCTCCTAATG 58.657 37.037 0.00 0.00 0.00 1.90
108 109 7.799081 AGTCAATCACATCATTCTCCTAATGA 58.201 34.615 3.13 3.13 40.50 2.57
109 110 8.438373 AGTCAATCACATCATTCTCCTAATGAT 58.562 33.333 7.28 7.28 45.40 2.45
117 118 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
118 119 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
119 120 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
120 121 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
121 122 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
122 123 5.600898 TCTCCTAATGATGTGATCCCGTTAA 59.399 40.000 0.00 0.00 0.00 2.01
123 124 6.270000 TCTCCTAATGATGTGATCCCGTTAAT 59.730 38.462 0.00 0.00 0.00 1.40
124 125 6.464222 TCCTAATGATGTGATCCCGTTAATC 58.536 40.000 0.00 0.00 0.00 1.75
125 126 6.042666 TCCTAATGATGTGATCCCGTTAATCA 59.957 38.462 0.00 0.00 0.00 2.57
126 127 6.710295 CCTAATGATGTGATCCCGTTAATCAA 59.290 38.462 0.00 0.00 35.04 2.57
127 128 7.228507 CCTAATGATGTGATCCCGTTAATCAAA 59.771 37.037 0.00 0.00 35.04 2.69
128 129 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32
129 130 6.375945 TGATGTGATCCCGTTAATCAAATG 57.624 37.500 0.00 0.00 32.39 2.32
130 131 6.118852 TGATGTGATCCCGTTAATCAAATGA 58.881 36.000 0.00 0.00 32.39 2.57
131 132 5.811399 TGTGATCCCGTTAATCAAATGAC 57.189 39.130 0.00 0.00 35.04 3.06
132 133 5.249420 TGTGATCCCGTTAATCAAATGACA 58.751 37.500 0.00 0.00 35.04 3.58
133 134 5.707764 TGTGATCCCGTTAATCAAATGACAA 59.292 36.000 0.00 0.00 35.04 3.18
134 135 6.027749 GTGATCCCGTTAATCAAATGACAAC 58.972 40.000 0.00 0.00 35.04 3.32
135 136 5.943416 TGATCCCGTTAATCAAATGACAACT 59.057 36.000 0.00 0.00 30.37 3.16
136 137 5.873179 TCCCGTTAATCAAATGACAACTC 57.127 39.130 7.65 0.00 0.00 3.01
137 138 5.309638 TCCCGTTAATCAAATGACAACTCA 58.690 37.500 7.65 0.00 0.00 3.41
138 139 5.943416 TCCCGTTAATCAAATGACAACTCAT 59.057 36.000 7.65 0.00 38.94 2.90
139 140 6.029607 CCCGTTAATCAAATGACAACTCATG 58.970 40.000 7.65 0.00 37.20 3.07
151 152 4.679373 ACAACTCATGTCTATGGCTAGG 57.321 45.455 0.00 0.00 37.96 3.02
152 153 4.290093 ACAACTCATGTCTATGGCTAGGA 58.710 43.478 0.00 0.00 37.96 2.94
153 154 4.716784 ACAACTCATGTCTATGGCTAGGAA 59.283 41.667 0.00 0.00 37.96 3.36
154 155 5.189736 ACAACTCATGTCTATGGCTAGGAAA 59.810 40.000 0.00 0.00 37.96 3.13
155 156 5.283457 ACTCATGTCTATGGCTAGGAAAC 57.717 43.478 0.00 0.00 34.97 2.78
156 157 4.965532 ACTCATGTCTATGGCTAGGAAACT 59.034 41.667 0.00 0.00 38.55 2.66
157 158 5.426833 ACTCATGTCTATGGCTAGGAAACTT 59.573 40.000 0.00 0.00 37.07 2.66
158 159 6.611642 ACTCATGTCTATGGCTAGGAAACTTA 59.388 38.462 0.00 0.00 37.07 2.24
159 160 7.125811 ACTCATGTCTATGGCTAGGAAACTTAA 59.874 37.037 0.00 0.00 37.07 1.85
160 161 7.272978 TCATGTCTATGGCTAGGAAACTTAAC 58.727 38.462 0.00 0.00 37.07 2.01
161 162 5.985911 TGTCTATGGCTAGGAAACTTAACC 58.014 41.667 0.00 0.00 43.67 2.85
162 163 5.486063 TGTCTATGGCTAGGAAACTTAACCA 59.514 40.000 0.00 0.00 43.67 3.67
163 164 6.157994 TGTCTATGGCTAGGAAACTTAACCAT 59.842 38.462 0.00 0.00 43.99 3.55
164 165 6.706716 GTCTATGGCTAGGAAACTTAACCATC 59.293 42.308 0.00 0.00 42.08 3.51
165 166 5.717119 ATGGCTAGGAAACTTAACCATCT 57.283 39.130 0.00 0.00 40.24 2.90
166 167 5.514500 TGGCTAGGAAACTTAACCATCTT 57.486 39.130 0.00 0.00 43.67 2.40
167 168 5.887754 TGGCTAGGAAACTTAACCATCTTT 58.112 37.500 0.00 0.00 43.67 2.52
168 169 5.710099 TGGCTAGGAAACTTAACCATCTTTG 59.290 40.000 0.00 0.00 43.67 2.77
169 170 5.944007 GGCTAGGAAACTTAACCATCTTTGA 59.056 40.000 0.00 0.00 43.67 2.69
170 171 6.603599 GGCTAGGAAACTTAACCATCTTTGAT 59.396 38.462 0.00 0.00 43.67 2.57
171 172 7.122799 GGCTAGGAAACTTAACCATCTTTGATT 59.877 37.037 0.00 0.00 43.67 2.57
172 173 8.184848 GCTAGGAAACTTAACCATCTTTGATTC 58.815 37.037 0.00 0.00 43.67 2.52
173 174 9.231297 CTAGGAAACTTAACCATCTTTGATTCA 57.769 33.333 0.00 0.00 43.67 2.57
174 175 8.477419 AGGAAACTTAACCATCTTTGATTCAA 57.523 30.769 0.00 0.00 37.44 2.69
175 176 8.360390 AGGAAACTTAACCATCTTTGATTCAAC 58.640 33.333 0.00 0.00 37.44 3.18
176 177 7.326063 GGAAACTTAACCATCTTTGATTCAACG 59.674 37.037 0.00 0.00 0.00 4.10
177 178 7.504924 AACTTAACCATCTTTGATTCAACGA 57.495 32.000 7.90 7.90 0.00 3.85
178 179 7.133891 ACTTAACCATCTTTGATTCAACGAG 57.866 36.000 10.80 2.43 0.00 4.18
179 180 4.425577 AACCATCTTTGATTCAACGAGC 57.574 40.909 10.80 0.00 0.00 5.03
180 181 3.679389 ACCATCTTTGATTCAACGAGCT 58.321 40.909 10.80 0.00 0.00 4.09
181 182 4.832248 ACCATCTTTGATTCAACGAGCTA 58.168 39.130 10.80 0.00 0.00 3.32
182 183 4.872691 ACCATCTTTGATTCAACGAGCTAG 59.127 41.667 10.80 0.00 0.00 3.42
183 184 4.872691 CCATCTTTGATTCAACGAGCTAGT 59.127 41.667 10.80 0.00 0.00 2.57
184 185 5.006165 CCATCTTTGATTCAACGAGCTAGTC 59.994 44.000 10.80 0.00 0.00 2.59
185 186 5.134202 TCTTTGATTCAACGAGCTAGTCA 57.866 39.130 0.00 0.00 0.00 3.41
186 187 5.538118 TCTTTGATTCAACGAGCTAGTCAA 58.462 37.500 0.00 0.00 0.00 3.18
187 188 5.635280 TCTTTGATTCAACGAGCTAGTCAAG 59.365 40.000 0.00 0.00 0.00 3.02
188 189 4.521130 TGATTCAACGAGCTAGTCAAGT 57.479 40.909 0.00 0.00 0.00 3.16
189 190 5.638596 TGATTCAACGAGCTAGTCAAGTA 57.361 39.130 0.00 0.00 0.00 2.24
190 191 5.641709 TGATTCAACGAGCTAGTCAAGTAG 58.358 41.667 0.00 0.00 0.00 2.57
191 192 5.414765 TGATTCAACGAGCTAGTCAAGTAGA 59.585 40.000 0.00 0.00 0.00 2.59
192 193 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
193 194 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
194 195 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
195 196 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
196 197 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
197 198 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
198 199 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
199 200 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
200 201 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
201 202 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
202 203 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
203 204 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
204 205 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
205 206 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
206 207 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
207 208 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
208 209 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
209 210 6.249911 AGTAGAGGCATACTAGTGACACTA 57.750 41.667 14.53 14.53 34.21 2.74
210 211 6.843752 AGTAGAGGCATACTAGTGACACTAT 58.156 40.000 15.58 8.80 33.76 2.12
211 212 7.975608 AGTAGAGGCATACTAGTGACACTATA 58.024 38.462 15.58 10.48 33.76 1.31
212 213 8.607713 AGTAGAGGCATACTAGTGACACTATAT 58.392 37.037 15.58 12.02 33.76 0.86
213 214 9.233649 GTAGAGGCATACTAGTGACACTATATT 57.766 37.037 15.58 6.32 33.76 1.28
214 215 8.713708 AGAGGCATACTAGTGACACTATATTT 57.286 34.615 15.58 4.06 29.08 1.40
215 216 8.580720 AGAGGCATACTAGTGACACTATATTTG 58.419 37.037 15.58 12.49 29.08 2.32
216 217 8.251383 AGGCATACTAGTGACACTATATTTGT 57.749 34.615 15.58 11.73 29.08 2.83
217 218 8.361139 AGGCATACTAGTGACACTATATTTGTC 58.639 37.037 15.58 12.84 43.22 3.18
218 219 8.361139 GGCATACTAGTGACACTATATTTGTCT 58.639 37.037 15.58 0.71 43.30 3.41
246 247 8.608317 TGTATTCACACATGTATTATGTTTCCG 58.392 33.333 0.00 0.00 0.00 4.30
247 248 6.429791 TTCACACATGTATTATGTTTCCGG 57.570 37.500 0.00 0.00 0.00 5.14
248 249 5.492895 TCACACATGTATTATGTTTCCGGT 58.507 37.500 0.00 0.00 0.00 5.28
249 250 5.941058 TCACACATGTATTATGTTTCCGGTT 59.059 36.000 0.00 0.00 0.00 4.44
250 251 7.104290 TCACACATGTATTATGTTTCCGGTTA 58.896 34.615 0.00 0.00 0.00 2.85
251 252 7.606839 TCACACATGTATTATGTTTCCGGTTAA 59.393 33.333 0.00 0.00 0.00 2.01
252 253 8.402472 CACACATGTATTATGTTTCCGGTTAAT 58.598 33.333 0.00 1.95 0.00 1.40
253 254 9.616156 ACACATGTATTATGTTTCCGGTTAATA 57.384 29.630 0.00 0.00 0.00 0.98
254 255 9.872757 CACATGTATTATGTTTCCGGTTAATAC 57.127 33.333 0.00 12.47 37.73 1.89
255 256 9.616156 ACATGTATTATGTTTCCGGTTAATACA 57.384 29.630 22.83 22.83 44.85 2.29
263 264 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
264 265 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
265 266 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
266 267 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
267 268 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
268 269 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
269 270 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
270 271 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
328 329 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
340 341 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
368 369 1.710996 TTTGGTGGGCTCGGAGGAAA 61.711 55.000 7.20 0.00 0.00 3.13
377 378 2.205911 GCTCGGAGGAAAGCTATTCAC 58.794 52.381 7.20 4.71 35.60 3.18
399 400 3.484229 CGACAATGAATTTCAGAGTCCGC 60.484 47.826 19.80 5.42 33.34 5.54
401 402 3.438087 ACAATGAATTTCAGAGTCCGCTG 59.562 43.478 5.21 0.00 37.24 5.18
444 445 8.378565 TCAAGAGATTTTTAGATGACCTTGAGT 58.621 33.333 0.00 0.00 34.45 3.41
453 454 5.690464 AGATGACCTTGAGTTAGCAGATT 57.310 39.130 0.00 0.00 0.00 2.40
462 463 6.756074 CCTTGAGTTAGCAGATTCTAGAACAG 59.244 42.308 7.48 1.85 0.00 3.16
471 472 2.743636 TTCTAGAACAGCAAGACCGG 57.256 50.000 0.00 0.00 0.00 5.28
527 528 2.728435 GCTACCACCGACGGGGAAT 61.728 63.158 20.29 8.02 39.97 3.01
542 543 1.629013 GGAATGCGGCAAAGCTAAAC 58.371 50.000 6.82 0.00 38.13 2.01
580 581 2.792635 CCTTGGGAGAAAGGGGAGT 58.207 57.895 0.00 0.00 42.68 3.85
584 585 1.377333 GGGAGAAAGGGGAGTTGCG 60.377 63.158 0.00 0.00 0.00 4.85
587 588 2.034221 GAAAGGGGAGTTGCGGCT 59.966 61.111 0.00 0.00 0.00 5.52
602 603 1.276421 GCGGCTGTGATATGTAGGGAT 59.724 52.381 0.00 0.00 0.00 3.85
612 614 8.685257 TGTGATATGTAGGGATAAAGATGGAT 57.315 34.615 0.00 0.00 0.00 3.41
614 616 8.543774 GTGATATGTAGGGATAAAGATGGATGT 58.456 37.037 0.00 0.00 0.00 3.06
719 721 3.343617 CCTTGCTCGGGATTTGAACTTA 58.656 45.455 0.00 0.00 0.00 2.24
726 728 4.320870 TCGGGATTTGAACTTACAAGACC 58.679 43.478 0.00 0.00 0.00 3.85
776 778 1.337384 TAGCGCACATCAGGGATGGT 61.337 55.000 11.47 0.00 43.60 3.55
779 781 1.609239 GCACATCAGGGATGGTGGA 59.391 57.895 10.64 0.00 43.60 4.02
783 785 2.446848 ATCAGGGATGGTGGAGCGG 61.447 63.158 0.00 0.00 0.00 5.52
812 814 8.038351 GTCTATGCTTCTATCCTTAGGGAAATC 58.962 40.741 0.00 0.00 45.78 2.17
813 815 5.215252 TGCTTCTATCCTTAGGGAAATCG 57.785 43.478 0.00 0.00 45.78 3.34
823 826 7.722949 TCCTTAGGGAAATCGAACTTAGTAA 57.277 36.000 0.00 0.00 38.93 2.24
998 1001 5.685728 AGTCATGAATAAAGCCCCTAGTTC 58.314 41.667 0.00 0.00 0.00 3.01
1003 1006 4.043561 TGAATAAAGCCCCTAGTTCACCAA 59.956 41.667 0.00 0.00 0.00 3.67
1033 1036 2.669240 CTCCCGTCACTTTCCCCC 59.331 66.667 0.00 0.00 0.00 5.40
1322 1338 3.087065 GCTTCCACCCAGCCCTAA 58.913 61.111 0.00 0.00 0.00 2.69
1324 1340 1.303282 CTTCCACCCAGCCCTAACC 59.697 63.158 0.00 0.00 0.00 2.85
1325 1341 1.151677 TTCCACCCAGCCCTAACCT 60.152 57.895 0.00 0.00 0.00 3.50
1327 1343 2.680370 CCACCCAGCCCTAACCTCC 61.680 68.421 0.00 0.00 0.00 4.30
1328 1344 1.923395 CACCCAGCCCTAACCTCCA 60.923 63.158 0.00 0.00 0.00 3.86
1329 1345 1.923909 ACCCAGCCCTAACCTCCAC 60.924 63.158 0.00 0.00 0.00 4.02
1334 1364 3.087906 CCCTAACCTCCACCCCCG 61.088 72.222 0.00 0.00 0.00 5.73
1372 1411 1.812093 CGCCGCCGATTTCACCTTA 60.812 57.895 0.00 0.00 36.29 2.69
1650 1720 2.440409 GGCTGGAGACACAACATTCAT 58.560 47.619 0.00 0.00 35.60 2.57
1998 2083 2.497273 GGATCTTTGGTTTCCATGGTGG 59.503 50.000 12.58 0.00 39.43 4.61
2023 2108 4.961438 TGCATCCAATCTCAGCTATACA 57.039 40.909 0.00 0.00 0.00 2.29
2113 2204 8.144478 TCTGGCTACAAATATTGTATCAGAGAC 58.856 37.037 20.26 9.23 44.46 3.36
2247 2362 9.982651 TTATGAGAAACAGCACTATAAGTATCC 57.017 33.333 0.00 0.00 0.00 2.59
2391 2511 3.181484 TGCTTCATGCTCATTATGGCAAC 60.181 43.478 11.18 2.63 41.90 4.17
2563 2794 5.050499 CACTACAAGTAGCTTATGCATGAGC 60.050 44.000 30.45 30.45 42.74 4.26
2708 2948 8.124808 TGAATTGATTCACCATGAGAAAATCA 57.875 30.769 2.39 1.69 41.51 2.57
2738 2978 3.252215 TCAAAGACAGCCCATTTTGTACG 59.748 43.478 0.00 0.00 33.46 3.67
3055 3417 6.706270 TGATTGACTGAAACTTAGAGTTGTCC 59.294 38.462 0.00 0.00 38.66 4.02
3097 3460 0.250727 GCCAACACCCTGAGCTACAA 60.251 55.000 0.00 0.00 0.00 2.41
3206 4459 5.836347 TGATCTCGTTGAGGATGAATACAG 58.164 41.667 0.00 0.00 0.00 2.74
3273 4526 5.466127 AATGAAGGAGTGCCCCTATTTTA 57.534 39.130 0.00 0.00 34.95 1.52
3331 4589 4.098914 AGGAAACAAGTTGGTGCATAGA 57.901 40.909 7.96 0.00 0.00 1.98
3357 4616 4.440525 CCATGACATCACCAGCAATAAACC 60.441 45.833 0.00 0.00 0.00 3.27
3405 4664 3.385111 CCTACCAGAGCCTACAGGTTTAG 59.615 52.174 0.00 0.00 37.57 1.85
3482 4741 0.464036 AACTGGACAAGCACAGTCGA 59.536 50.000 0.00 0.00 46.49 4.20
3532 4791 5.564550 ACTCCACTATGCAGTTGAAATTCT 58.435 37.500 0.00 0.00 30.46 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.758829 TCATGACTTATACATGTTCCTGTAACT 58.241 33.333 2.30 0.00 43.56 2.24
2 3 8.942338 TCATGACTTATACATGTTCCTGTAAC 57.058 34.615 2.30 0.00 43.56 2.50
3 4 9.599866 CTTCATGACTTATACATGTTCCTGTAA 57.400 33.333 2.30 0.00 43.56 2.41
4 5 8.977412 TCTTCATGACTTATACATGTTCCTGTA 58.023 33.333 2.30 0.00 43.56 2.74
5 6 7.851228 TCTTCATGACTTATACATGTTCCTGT 58.149 34.615 2.30 0.00 43.56 4.00
6 7 8.722480 TTCTTCATGACTTATACATGTTCCTG 57.278 34.615 2.30 0.00 43.56 3.86
7 8 9.388506 CTTTCTTCATGACTTATACATGTTCCT 57.611 33.333 2.30 0.00 43.56 3.36
8 9 8.125448 GCTTTCTTCATGACTTATACATGTTCC 58.875 37.037 2.30 0.00 43.56 3.62
9 10 8.668353 TGCTTTCTTCATGACTTATACATGTTC 58.332 33.333 2.30 0.00 43.56 3.18
10 11 8.565896 TGCTTTCTTCATGACTTATACATGTT 57.434 30.769 2.30 0.00 43.56 2.71
11 12 8.565896 TTGCTTTCTTCATGACTTATACATGT 57.434 30.769 2.69 2.69 43.56 3.21
14 15 8.830580 GCTATTGCTTTCTTCATGACTTATACA 58.169 33.333 0.00 0.00 36.03 2.29
15 16 8.830580 TGCTATTGCTTTCTTCATGACTTATAC 58.169 33.333 0.00 0.00 40.48 1.47
16 17 8.962884 TGCTATTGCTTTCTTCATGACTTATA 57.037 30.769 0.00 0.00 40.48 0.98
17 18 7.870509 TGCTATTGCTTTCTTCATGACTTAT 57.129 32.000 0.00 0.00 40.48 1.73
18 19 7.174772 TGTTGCTATTGCTTTCTTCATGACTTA 59.825 33.333 0.00 0.00 40.48 2.24
19 20 6.016024 TGTTGCTATTGCTTTCTTCATGACTT 60.016 34.615 0.00 0.00 40.48 3.01
20 21 5.474532 TGTTGCTATTGCTTTCTTCATGACT 59.525 36.000 0.00 0.00 40.48 3.41
21 22 5.702865 TGTTGCTATTGCTTTCTTCATGAC 58.297 37.500 0.00 0.00 40.48 3.06
22 23 5.963176 TGTTGCTATTGCTTTCTTCATGA 57.037 34.783 0.00 0.00 40.48 3.07
23 24 7.478322 AGTATGTTGCTATTGCTTTCTTCATG 58.522 34.615 0.00 0.00 40.48 3.07
24 25 7.636150 AGTATGTTGCTATTGCTTTCTTCAT 57.364 32.000 0.00 0.17 40.48 2.57
25 26 8.560355 TTAGTATGTTGCTATTGCTTTCTTCA 57.440 30.769 0.00 0.00 40.48 3.02
26 27 9.278734 GTTTAGTATGTTGCTATTGCTTTCTTC 57.721 33.333 0.00 0.00 40.48 2.87
27 28 7.962918 CGTTTAGTATGTTGCTATTGCTTTCTT 59.037 33.333 0.00 0.00 40.48 2.52
28 29 7.333423 TCGTTTAGTATGTTGCTATTGCTTTCT 59.667 33.333 0.00 0.00 40.48 2.52
29 30 7.461107 TCGTTTAGTATGTTGCTATTGCTTTC 58.539 34.615 0.00 0.00 40.48 2.62
30 31 7.372451 TCGTTTAGTATGTTGCTATTGCTTT 57.628 32.000 0.00 0.00 40.48 3.51
31 32 6.978343 TCGTTTAGTATGTTGCTATTGCTT 57.022 33.333 0.00 0.00 40.48 3.91
32 33 6.761242 TGATCGTTTAGTATGTTGCTATTGCT 59.239 34.615 0.00 0.00 40.48 3.91
33 34 6.943981 TGATCGTTTAGTATGTTGCTATTGC 58.056 36.000 0.00 0.00 40.20 3.56
34 35 9.935682 ATTTGATCGTTTAGTATGTTGCTATTG 57.064 29.630 0.00 0.00 0.00 1.90
35 36 9.935682 CATTTGATCGTTTAGTATGTTGCTATT 57.064 29.630 0.00 0.00 0.00 1.73
36 37 8.070171 GCATTTGATCGTTTAGTATGTTGCTAT 58.930 33.333 0.00 0.00 0.00 2.97
37 38 7.279981 AGCATTTGATCGTTTAGTATGTTGCTA 59.720 33.333 0.00 0.00 32.88 3.49
38 39 6.094048 AGCATTTGATCGTTTAGTATGTTGCT 59.906 34.615 0.00 0.00 0.00 3.91
39 40 6.258160 AGCATTTGATCGTTTAGTATGTTGC 58.742 36.000 0.00 0.00 0.00 4.17
40 41 9.425893 CTTAGCATTTGATCGTTTAGTATGTTG 57.574 33.333 0.00 0.00 0.00 3.33
41 42 8.122952 GCTTAGCATTTGATCGTTTAGTATGTT 58.877 33.333 0.00 0.00 0.00 2.71
42 43 7.495934 AGCTTAGCATTTGATCGTTTAGTATGT 59.504 33.333 7.07 0.00 0.00 2.29
43 44 7.855545 AGCTTAGCATTTGATCGTTTAGTATG 58.144 34.615 7.07 0.00 0.00 2.39
44 45 9.542462 TTAGCTTAGCATTTGATCGTTTAGTAT 57.458 29.630 7.07 0.00 0.00 2.12
45 46 8.814235 GTTAGCTTAGCATTTGATCGTTTAGTA 58.186 33.333 7.07 0.00 0.00 1.82
46 47 7.464178 CGTTAGCTTAGCATTTGATCGTTTAGT 60.464 37.037 7.07 0.00 0.00 2.24
47 48 6.841286 CGTTAGCTTAGCATTTGATCGTTTAG 59.159 38.462 7.07 0.00 0.00 1.85
48 49 6.237996 CCGTTAGCTTAGCATTTGATCGTTTA 60.238 38.462 7.07 0.00 0.00 2.01
49 50 5.447279 CCGTTAGCTTAGCATTTGATCGTTT 60.447 40.000 7.07 0.00 0.00 3.60
50 51 4.034048 CCGTTAGCTTAGCATTTGATCGTT 59.966 41.667 7.07 0.00 0.00 3.85
51 52 3.555956 CCGTTAGCTTAGCATTTGATCGT 59.444 43.478 7.07 0.00 0.00 3.73
52 53 3.802139 TCCGTTAGCTTAGCATTTGATCG 59.198 43.478 7.07 1.46 0.00 3.69
53 54 5.734855 TTCCGTTAGCTTAGCATTTGATC 57.265 39.130 7.07 0.00 0.00 2.92
54 55 5.009010 CCATTCCGTTAGCTTAGCATTTGAT 59.991 40.000 7.07 0.00 0.00 2.57
55 56 4.335315 CCATTCCGTTAGCTTAGCATTTGA 59.665 41.667 7.07 0.00 0.00 2.69
56 57 4.498009 CCCATTCCGTTAGCTTAGCATTTG 60.498 45.833 7.07 0.00 0.00 2.32
57 58 3.632145 CCCATTCCGTTAGCTTAGCATTT 59.368 43.478 7.07 0.00 0.00 2.32
58 59 3.214328 CCCATTCCGTTAGCTTAGCATT 58.786 45.455 7.07 0.00 0.00 3.56
59 60 2.172717 ACCCATTCCGTTAGCTTAGCAT 59.827 45.455 7.07 0.00 0.00 3.79
60 61 1.557832 ACCCATTCCGTTAGCTTAGCA 59.442 47.619 7.07 0.00 0.00 3.49
61 62 2.210961 GACCCATTCCGTTAGCTTAGC 58.789 52.381 0.00 0.00 0.00 3.09
62 63 3.536956 TGACCCATTCCGTTAGCTTAG 57.463 47.619 0.00 0.00 0.00 2.18
63 64 3.262405 ACTTGACCCATTCCGTTAGCTTA 59.738 43.478 0.00 0.00 0.00 3.09
64 65 2.039879 ACTTGACCCATTCCGTTAGCTT 59.960 45.455 0.00 0.00 0.00 3.74
65 66 1.628846 ACTTGACCCATTCCGTTAGCT 59.371 47.619 0.00 0.00 0.00 3.32
66 67 2.007608 GACTTGACCCATTCCGTTAGC 58.992 52.381 0.00 0.00 0.00 3.09
67 68 3.328382 TGACTTGACCCATTCCGTTAG 57.672 47.619 0.00 0.00 0.00 2.34
68 69 3.773418 TTGACTTGACCCATTCCGTTA 57.227 42.857 0.00 0.00 0.00 3.18
69 70 2.649531 TTGACTTGACCCATTCCGTT 57.350 45.000 0.00 0.00 0.00 4.44
70 71 2.039746 TGATTGACTTGACCCATTCCGT 59.960 45.455 0.00 0.00 0.00 4.69
71 72 2.420022 GTGATTGACTTGACCCATTCCG 59.580 50.000 0.00 0.00 0.00 4.30
72 73 3.420893 TGTGATTGACTTGACCCATTCC 58.579 45.455 0.00 0.00 0.00 3.01
73 74 4.701651 TGATGTGATTGACTTGACCCATTC 59.298 41.667 0.00 0.00 0.00 2.67
74 75 4.665451 TGATGTGATTGACTTGACCCATT 58.335 39.130 0.00 0.00 0.00 3.16
75 76 4.305539 TGATGTGATTGACTTGACCCAT 57.694 40.909 0.00 0.00 0.00 4.00
76 77 3.786368 TGATGTGATTGACTTGACCCA 57.214 42.857 0.00 0.00 0.00 4.51
77 78 4.946157 AGAATGATGTGATTGACTTGACCC 59.054 41.667 0.00 0.00 0.00 4.46
78 79 5.065731 GGAGAATGATGTGATTGACTTGACC 59.934 44.000 0.00 0.00 0.00 4.02
79 80 5.879223 AGGAGAATGATGTGATTGACTTGAC 59.121 40.000 0.00 0.00 0.00 3.18
80 81 6.058553 AGGAGAATGATGTGATTGACTTGA 57.941 37.500 0.00 0.00 0.00 3.02
81 82 7.854557 TTAGGAGAATGATGTGATTGACTTG 57.145 36.000 0.00 0.00 0.00 3.16
82 83 8.270030 TCATTAGGAGAATGATGTGATTGACTT 58.730 33.333 0.00 0.00 32.21 3.01
83 84 7.799081 TCATTAGGAGAATGATGTGATTGACT 58.201 34.615 0.00 0.00 32.21 3.41
84 85 8.618702 ATCATTAGGAGAATGATGTGATTGAC 57.381 34.615 11.08 0.00 43.52 3.18
93 94 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
94 95 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
95 96 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
96 97 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
97 98 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
98 99 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
99 100 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
100 101 5.880164 TTAACGGGATCACATCATTAGGA 57.120 39.130 0.00 0.00 0.00 2.94
101 102 6.230472 TGATTAACGGGATCACATCATTAGG 58.770 40.000 0.00 0.00 0.00 2.69
102 103 7.728847 TTGATTAACGGGATCACATCATTAG 57.271 36.000 0.00 0.00 33.51 1.73
103 104 8.567104 CATTTGATTAACGGGATCACATCATTA 58.433 33.333 0.00 0.00 33.51 1.90
104 105 7.285172 TCATTTGATTAACGGGATCACATCATT 59.715 33.333 0.00 0.00 33.51 2.57
105 106 6.772233 TCATTTGATTAACGGGATCACATCAT 59.228 34.615 0.00 0.00 33.51 2.45
106 107 6.038161 GTCATTTGATTAACGGGATCACATCA 59.962 38.462 0.00 0.00 33.51 3.07
107 108 6.038161 TGTCATTTGATTAACGGGATCACATC 59.962 38.462 0.00 0.00 33.51 3.06
108 109 5.885352 TGTCATTTGATTAACGGGATCACAT 59.115 36.000 0.00 0.00 33.51 3.21
109 110 5.249420 TGTCATTTGATTAACGGGATCACA 58.751 37.500 0.00 0.00 33.51 3.58
110 111 5.811399 TGTCATTTGATTAACGGGATCAC 57.189 39.130 0.00 0.00 33.51 3.06
111 112 5.943416 AGTTGTCATTTGATTAACGGGATCA 59.057 36.000 0.00 0.00 32.73 2.92
112 113 6.093495 TGAGTTGTCATTTGATTAACGGGATC 59.907 38.462 0.00 0.00 32.73 3.36
113 114 5.943416 TGAGTTGTCATTTGATTAACGGGAT 59.057 36.000 0.00 0.00 32.73 3.85
114 115 5.309638 TGAGTTGTCATTTGATTAACGGGA 58.690 37.500 0.00 0.00 32.73 5.14
115 116 5.621197 TGAGTTGTCATTTGATTAACGGG 57.379 39.130 0.00 0.00 32.73 5.28
116 117 6.611381 ACATGAGTTGTCATTTGATTAACGG 58.389 36.000 0.00 0.00 40.84 4.44
130 131 4.290093 TCCTAGCCATAGACATGAGTTGT 58.710 43.478 0.00 0.00 42.79 3.32
131 132 4.944619 TCCTAGCCATAGACATGAGTTG 57.055 45.455 0.00 0.00 33.67 3.16
132 133 5.426833 AGTTTCCTAGCCATAGACATGAGTT 59.573 40.000 0.00 0.00 33.67 3.01
133 134 4.965532 AGTTTCCTAGCCATAGACATGAGT 59.034 41.667 0.00 0.00 33.67 3.41
134 135 5.543507 AGTTTCCTAGCCATAGACATGAG 57.456 43.478 0.00 0.00 33.67 2.90
135 136 5.957771 AAGTTTCCTAGCCATAGACATGA 57.042 39.130 0.00 0.00 33.67 3.07
136 137 6.483640 GGTTAAGTTTCCTAGCCATAGACATG 59.516 42.308 0.00 0.00 0.00 3.21
137 138 6.157994 TGGTTAAGTTTCCTAGCCATAGACAT 59.842 38.462 0.00 0.00 0.00 3.06
138 139 5.486063 TGGTTAAGTTTCCTAGCCATAGACA 59.514 40.000 0.00 0.00 0.00 3.41
139 140 5.985911 TGGTTAAGTTTCCTAGCCATAGAC 58.014 41.667 0.00 0.00 0.00 2.59
140 141 6.615726 AGATGGTTAAGTTTCCTAGCCATAGA 59.384 38.462 0.00 0.00 35.64 1.98
141 142 6.831976 AGATGGTTAAGTTTCCTAGCCATAG 58.168 40.000 0.00 0.00 35.64 2.23
142 143 6.824958 AGATGGTTAAGTTTCCTAGCCATA 57.175 37.500 0.00 0.00 35.64 2.74
143 144 5.717119 AGATGGTTAAGTTTCCTAGCCAT 57.283 39.130 0.00 0.00 37.88 4.40
144 145 5.514500 AAGATGGTTAAGTTTCCTAGCCA 57.486 39.130 0.00 0.00 0.00 4.75
145 146 5.944007 TCAAAGATGGTTAAGTTTCCTAGCC 59.056 40.000 0.00 0.00 0.00 3.93
146 147 7.631717 ATCAAAGATGGTTAAGTTTCCTAGC 57.368 36.000 0.00 0.00 0.00 3.42
147 148 9.231297 TGAATCAAAGATGGTTAAGTTTCCTAG 57.769 33.333 0.00 0.00 27.31 3.02
148 149 9.581289 TTGAATCAAAGATGGTTAAGTTTCCTA 57.419 29.630 0.00 0.00 27.31 2.94
149 150 8.360390 GTTGAATCAAAGATGGTTAAGTTTCCT 58.640 33.333 0.00 0.00 27.31 3.36
150 151 7.326063 CGTTGAATCAAAGATGGTTAAGTTTCC 59.674 37.037 2.77 0.00 27.31 3.13
151 152 8.073768 TCGTTGAATCAAAGATGGTTAAGTTTC 58.926 33.333 7.50 0.00 27.31 2.78
152 153 7.936584 TCGTTGAATCAAAGATGGTTAAGTTT 58.063 30.769 7.50 0.00 27.31 2.66
153 154 7.504924 TCGTTGAATCAAAGATGGTTAAGTT 57.495 32.000 7.50 0.00 27.31 2.66
154 155 6.348540 GCTCGTTGAATCAAAGATGGTTAAGT 60.349 38.462 11.68 0.00 32.24 2.24
155 156 6.024049 GCTCGTTGAATCAAAGATGGTTAAG 58.976 40.000 11.68 0.83 32.24 1.85
156 157 5.705441 AGCTCGTTGAATCAAAGATGGTTAA 59.295 36.000 11.68 0.00 32.24 2.01
157 158 5.245531 AGCTCGTTGAATCAAAGATGGTTA 58.754 37.500 11.68 0.00 32.24 2.85
158 159 4.074970 AGCTCGTTGAATCAAAGATGGTT 58.925 39.130 11.68 0.00 32.24 3.67
159 160 3.679389 AGCTCGTTGAATCAAAGATGGT 58.321 40.909 11.68 8.95 32.24 3.55
160 161 4.872691 ACTAGCTCGTTGAATCAAAGATGG 59.127 41.667 11.68 3.76 32.24 3.51
161 162 5.578336 TGACTAGCTCGTTGAATCAAAGATG 59.422 40.000 11.68 7.72 32.24 2.90
162 163 5.724328 TGACTAGCTCGTTGAATCAAAGAT 58.276 37.500 11.68 1.68 32.24 2.40
163 164 5.134202 TGACTAGCTCGTTGAATCAAAGA 57.866 39.130 10.87 10.87 31.82 2.52
164 165 5.406780 ACTTGACTAGCTCGTTGAATCAAAG 59.593 40.000 0.00 0.00 0.00 2.77
165 166 5.297547 ACTTGACTAGCTCGTTGAATCAAA 58.702 37.500 0.00 0.00 0.00 2.69
166 167 4.883083 ACTTGACTAGCTCGTTGAATCAA 58.117 39.130 0.00 0.00 0.00 2.57
167 168 4.521130 ACTTGACTAGCTCGTTGAATCA 57.479 40.909 0.00 0.00 0.00 2.57
168 169 5.881447 TCTACTTGACTAGCTCGTTGAATC 58.119 41.667 0.00 0.00 0.00 2.52
169 170 5.163602 CCTCTACTTGACTAGCTCGTTGAAT 60.164 44.000 0.00 0.00 0.00 2.57
170 171 4.156190 CCTCTACTTGACTAGCTCGTTGAA 59.844 45.833 0.00 0.00 0.00 2.69
171 172 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
172 173 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
173 174 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
174 175 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
175 176 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
176 177 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
177 178 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
178 179 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
179 180 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
180 181 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
181 182 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
182 183 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
183 184 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
184 185 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
185 186 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
186 187 5.118729 AGTGTCACTAGTATGCCTCTACT 57.881 43.478 2.87 0.00 36.04 2.57
187 188 8.795842 ATATAGTGTCACTAGTATGCCTCTAC 57.204 38.462 17.43 0.00 33.66 2.59
188 189 9.809395 AAATATAGTGTCACTAGTATGCCTCTA 57.191 33.333 17.43 3.30 33.66 2.43
189 190 8.580720 CAAATATAGTGTCACTAGTATGCCTCT 58.419 37.037 17.43 1.22 33.66 3.69
190 191 8.361139 ACAAATATAGTGTCACTAGTATGCCTC 58.639 37.037 17.43 0.00 33.66 4.70
191 192 8.251383 ACAAATATAGTGTCACTAGTATGCCT 57.749 34.615 17.43 2.55 33.66 4.75
192 193 8.361139 AGACAAATATAGTGTCACTAGTATGCC 58.639 37.037 17.43 7.26 46.44 4.40
220 221 8.608317 CGGAAACATAATACATGTGTGAATACA 58.392 33.333 9.11 0.00 34.63 2.29
221 222 8.067784 CCGGAAACATAATACATGTGTGAATAC 58.932 37.037 9.11 0.00 31.80 1.89
222 223 7.771361 ACCGGAAACATAATACATGTGTGAATA 59.229 33.333 9.46 0.00 31.80 1.75
223 224 6.601613 ACCGGAAACATAATACATGTGTGAAT 59.398 34.615 9.46 0.00 31.80 2.57
224 225 5.941058 ACCGGAAACATAATACATGTGTGAA 59.059 36.000 9.46 0.00 31.80 3.18
225 226 5.492895 ACCGGAAACATAATACATGTGTGA 58.507 37.500 9.46 0.00 31.80 3.58
226 227 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
227 228 7.925043 TTAACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
228 229 9.872757 GTATTAACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 39.40 3.21
229 230 9.616156 TGTATTAACCGGAAACATAATACATGT 57.384 29.630 22.31 2.69 42.13 3.21
237 238 9.048446 GCTAGAATTGTATTAACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
238 239 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
239 240 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
240 241 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
241 242 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
242 243 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
243 244 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
244 245 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
319 320 4.349342 ACTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
320 321 5.303971 CACTGAAGGAAATATGCCCTAGAG 58.696 45.833 0.00 0.46 31.36 2.43
321 322 4.103153 CCACTGAAGGAAATATGCCCTAGA 59.897 45.833 0.00 0.00 31.36 2.43
322 323 4.392940 CCACTGAAGGAAATATGCCCTAG 58.607 47.826 0.00 0.00 31.36 3.02
323 324 3.138283 CCCACTGAAGGAAATATGCCCTA 59.862 47.826 0.00 0.00 31.36 3.53
324 325 2.091665 CCCACTGAAGGAAATATGCCCT 60.092 50.000 0.00 0.00 0.00 5.19
325 326 2.310538 CCCACTGAAGGAAATATGCCC 58.689 52.381 0.00 0.00 0.00 5.36
326 327 1.683385 GCCCACTGAAGGAAATATGCC 59.317 52.381 0.00 0.00 0.00 4.40
327 328 1.334869 CGCCCACTGAAGGAAATATGC 59.665 52.381 0.00 0.00 0.00 3.14
328 329 2.917933 TCGCCCACTGAAGGAAATATG 58.082 47.619 0.00 0.00 0.00 1.78
329 330 3.864789 ATCGCCCACTGAAGGAAATAT 57.135 42.857 0.00 0.00 0.00 1.28
330 331 3.644966 AATCGCCCACTGAAGGAAATA 57.355 42.857 0.00 0.00 0.00 1.40
331 332 2.493278 CAAATCGCCCACTGAAGGAAAT 59.507 45.455 0.00 0.00 0.00 2.17
332 333 1.885887 CAAATCGCCCACTGAAGGAAA 59.114 47.619 0.00 0.00 0.00 3.13
333 334 1.533625 CAAATCGCCCACTGAAGGAA 58.466 50.000 0.00 0.00 0.00 3.36
334 335 0.322456 CCAAATCGCCCACTGAAGGA 60.322 55.000 0.00 0.00 0.00 3.36
335 336 0.609131 ACCAAATCGCCCACTGAAGG 60.609 55.000 0.00 0.00 0.00 3.46
336 337 0.523072 CACCAAATCGCCCACTGAAG 59.477 55.000 0.00 0.00 0.00 3.02
337 338 0.893270 CCACCAAATCGCCCACTGAA 60.893 55.000 0.00 0.00 0.00 3.02
338 339 1.303236 CCACCAAATCGCCCACTGA 60.303 57.895 0.00 0.00 0.00 3.41
339 340 2.342650 CCCACCAAATCGCCCACTG 61.343 63.158 0.00 0.00 0.00 3.66
340 341 2.035626 CCCACCAAATCGCCCACT 59.964 61.111 0.00 0.00 0.00 4.00
368 369 6.595326 TCTGAAATTCATTGTCGTGAATAGCT 59.405 34.615 0.00 0.00 45.49 3.32
377 378 3.484229 GCGGACTCTGAAATTCATTGTCG 60.484 47.826 16.36 13.75 32.84 4.35
444 445 6.102663 GTCTTGCTGTTCTAGAATCTGCTAA 58.897 40.000 23.60 18.16 0.00 3.09
446 447 4.502962 GTCTTGCTGTTCTAGAATCTGCT 58.497 43.478 23.60 0.00 0.00 4.24
453 454 0.246635 GCCGGTCTTGCTGTTCTAGA 59.753 55.000 1.90 0.00 0.00 2.43
462 463 3.373565 CCCCAAAGCCGGTCTTGC 61.374 66.667 1.90 0.00 34.67 4.01
471 472 4.770874 TACCGCTCGCCCCAAAGC 62.771 66.667 0.00 0.00 35.13 3.51
500 501 0.605319 TCGGTGGTAGCCAAGCTTTG 60.605 55.000 0.00 0.00 40.44 2.77
525 526 1.613437 ACAGTTTAGCTTTGCCGCATT 59.387 42.857 0.00 0.00 0.00 3.56
527 528 0.310543 CACAGTTTAGCTTTGCCGCA 59.689 50.000 0.00 0.00 0.00 5.69
542 543 0.329261 TGGAAAGAGCCCCATCACAG 59.671 55.000 0.00 0.00 0.00 3.66
580 581 1.202639 CCCTACATATCACAGCCGCAA 60.203 52.381 0.00 0.00 0.00 4.85
584 585 6.360370 TCTTTATCCCTACATATCACAGCC 57.640 41.667 0.00 0.00 0.00 4.85
587 588 8.542926 CATCCATCTTTATCCCTACATATCACA 58.457 37.037 0.00 0.00 0.00 3.58
602 603 5.369404 TGCTCCCAGATAACATCCATCTTTA 59.631 40.000 0.00 0.00 30.18 1.85
612 614 0.106708 GCCGATGCTCCCAGATAACA 59.893 55.000 0.00 0.00 33.53 2.41
614 616 0.394192 CTGCCGATGCTCCCAGATAA 59.606 55.000 0.00 0.00 38.71 1.75
713 715 5.353111 GCTATCTCCAGGTCTTGTAAGTTC 58.647 45.833 0.00 0.00 0.00 3.01
719 721 2.393646 GAGGCTATCTCCAGGTCTTGT 58.606 52.381 0.00 0.00 36.52 3.16
740 742 1.469940 GCTATCACCACCTGACAGTCG 60.470 57.143 0.93 0.00 0.00 4.18
759 761 2.124570 ACCATCCCTGATGTGCGC 60.125 61.111 0.00 0.00 38.28 6.09
776 778 4.221422 GCATAGACCGCCGCTCCA 62.221 66.667 0.00 0.00 0.00 3.86
779 781 1.107538 TAGAAGCATAGACCGCCGCT 61.108 55.000 0.00 0.00 35.90 5.52
783 785 3.669251 AAGGATAGAAGCATAGACCGC 57.331 47.619 0.00 0.00 0.00 5.68
950 953 8.806429 TCAAAATCTGAGGAATACAAGCAATA 57.194 30.769 0.00 0.00 0.00 1.90
1012 1015 1.079057 GGAAAGTGACGGGAGCTCC 60.079 63.158 25.59 25.59 0.00 4.70
1013 1016 1.079057 GGGAAAGTGACGGGAGCTC 60.079 63.158 4.71 4.71 0.00 4.09
1014 1017 2.593956 GGGGAAAGTGACGGGAGCT 61.594 63.158 0.00 0.00 0.00 4.09
1015 1018 2.046217 GGGGAAAGTGACGGGAGC 60.046 66.667 0.00 0.00 0.00 4.70
1016 1019 1.900545 GAGGGGGAAAGTGACGGGAG 61.901 65.000 0.00 0.00 0.00 4.30
1017 1020 1.916777 GAGGGGGAAAGTGACGGGA 60.917 63.158 0.00 0.00 0.00 5.14
1018 1021 1.918800 AGAGGGGGAAAGTGACGGG 60.919 63.158 0.00 0.00 0.00 5.28
1019 1022 1.296715 CAGAGGGGGAAAGTGACGG 59.703 63.158 0.00 0.00 0.00 4.79
1033 1036 0.533032 GAGGAAACCCTCGACCAGAG 59.467 60.000 0.00 0.00 46.44 3.35
1207 1217 4.697756 CGGCGGAAGGTGAGGCAA 62.698 66.667 0.00 0.00 0.00 4.52
1353 1383 2.228389 TAAGGTGAAATCGGCGGCGA 62.228 55.000 36.40 36.40 0.00 5.54
1354 1384 1.157870 ATAAGGTGAAATCGGCGGCG 61.158 55.000 27.15 27.15 0.00 6.46
1356 1386 1.202651 AGGATAAGGTGAAATCGGCGG 60.203 52.381 7.21 0.00 0.00 6.13
1372 1411 0.029989 GGTGGTAGGGGAGGAAGGAT 60.030 60.000 0.00 0.00 0.00 3.24
1650 1720 5.623169 TGCAATATGCCATCAAGATGACTA 58.377 37.500 11.48 1.23 44.23 2.59
1998 2083 2.641305 AGCTGAGATTGGATGCAAGTC 58.359 47.619 5.69 5.54 0.00 3.01
2023 2108 2.281761 CCTTTGGTCCGTGCAGCT 60.282 61.111 0.00 0.00 0.00 4.24
2113 2204 0.512952 GCAAGTACCTCTGTGTTGCG 59.487 55.000 0.00 0.00 36.58 4.85
2247 2362 5.288712 GGGAAGTTGATATATGCGTATGTCG 59.711 44.000 15.44 0.00 43.12 4.35
2455 2666 5.160641 CAAGAAACACAATTATGTTCCCGG 58.839 41.667 1.92 0.00 42.01 5.73
2563 2794 1.590932 CAGATTTCCATCAGGGCTCG 58.409 55.000 0.00 0.00 36.21 5.03
2649 2885 9.807649 CCAGAAATAAAATTGTATTCCTTCCTG 57.192 33.333 1.24 5.11 0.00 3.86
2708 2948 2.092429 TGGGCTGTCTTTGACTTGAGTT 60.092 45.455 0.00 0.00 33.15 3.01
2868 3222 3.331150 TCAGATAAAACAACATCGCGGT 58.669 40.909 6.13 0.00 0.00 5.68
3055 3417 3.370978 AGCGAGAAACAATACAATCACCG 59.629 43.478 0.00 0.00 0.00 4.94
3097 3460 5.428253 AGCTCAACCACATATACGTGAATT 58.572 37.500 0.00 0.00 39.34 2.17
3206 4459 4.939509 AATGGTTACAATCAGCGTGTAC 57.060 40.909 0.00 0.00 31.27 2.90
3283 4537 9.257428 ACTACTAATAAAGCTCTAGGTCAAACT 57.743 33.333 0.00 0.00 0.00 2.66
3286 4540 9.352191 CCTACTACTAATAAAGCTCTAGGTCAA 57.648 37.037 0.00 0.00 0.00 3.18
3287 4541 8.721479 TCCTACTACTAATAAAGCTCTAGGTCA 58.279 37.037 0.00 0.00 0.00 4.02
3288 4542 9.571816 TTCCTACTACTAATAAAGCTCTAGGTC 57.428 37.037 0.00 0.00 0.00 3.85
3289 4543 9.933240 TTTCCTACTACTAATAAAGCTCTAGGT 57.067 33.333 0.00 0.00 0.00 3.08
3331 4589 1.077212 GCTGGTGATGTCATGGGCT 60.077 57.895 0.00 0.00 0.00 5.19
3357 4616 1.450312 GGGAGTTCGATGTGCCAGG 60.450 63.158 0.72 0.00 0.00 4.45
3405 4664 8.547894 CAAACAAGGCTTAAGTAAATTTGGAAC 58.452 33.333 0.00 0.00 0.00 3.62
3482 4741 5.070770 TGCAGAAAACTTGTTCACACAAT 57.929 34.783 0.00 0.00 42.21 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.