Multiple sequence alignment - TraesCS7B01G081700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G081700 chr7B 100.000 3245 0 0 1 3245 92064611 92061367 0.000000e+00 5993.0
1 TraesCS7B01G081700 chr7B 96.500 200 6 1 680 878 726434568 726434369 2.410000e-86 329.0
2 TraesCS7B01G081700 chr7B 95.980 199 7 1 681 878 23532411 23532609 4.040000e-84 322.0
3 TraesCS7B01G081700 chr7D 92.929 2093 86 23 883 2951 131270082 131268028 0.000000e+00 2988.0
4 TraesCS7B01G081700 chr7D 88.761 694 46 18 1 677 131270765 131270087 0.000000e+00 821.0
5 TraesCS7B01G081700 chr7D 89.701 301 21 7 1271 1571 421864325 421864615 3.060000e-100 375.0
6 TraesCS7B01G081700 chr7D 92.308 52 4 0 1640 1691 608194415 608194364 1.250000e-09 75.0
7 TraesCS7B01G081700 chr7A 91.688 1937 84 35 883 2769 130092226 130090317 0.000000e+00 2614.0
8 TraesCS7B01G081700 chr7A 86.838 699 37 23 1 663 130092930 130092251 0.000000e+00 730.0
9 TraesCS7B01G081700 chr7A 86.816 402 28 11 893 1284 130168010 130167624 2.990000e-115 425.0
10 TraesCS7B01G081700 chr7A 94.231 208 11 1 679 885 304765116 304764909 1.880000e-82 316.0
11 TraesCS7B01G081700 chr7A 89.837 246 20 2 1331 1571 164664435 164664680 8.740000e-81 311.0
12 TraesCS7B01G081700 chr7A 90.541 148 13 1 146 292 130169385 130169238 9.190000e-46 195.0
13 TraesCS7B01G081700 chr7A 89.394 132 8 6 443 569 130168203 130168073 9.320000e-36 161.0
14 TraesCS7B01G081700 chr7A 92.308 52 4 0 1640 1691 4519022 4518971 1.250000e-09 75.0
15 TraesCS7B01G081700 chr6A 85.637 557 40 11 1004 1560 17057340 17057856 1.700000e-152 549.0
16 TraesCS7B01G081700 chr6A 97.512 201 4 1 680 879 461143525 461143325 3.100000e-90 342.0
17 TraesCS7B01G081700 chr6A 89.320 103 5 1 3143 3245 49744555 49744459 1.220000e-24 124.0
18 TraesCS7B01G081700 chr2B 97.000 200 5 1 680 878 109084092 109083893 5.190000e-88 335.0
19 TraesCS7B01G081700 chr2B 90.291 103 4 1 3143 3245 450782155 450782059 2.630000e-26 130.0
20 TraesCS7B01G081700 chr5B 96.500 200 6 1 680 878 626195150 626195349 2.410000e-86 329.0
21 TraesCS7B01G081700 chr2A 96.482 199 6 1 681 878 101831994 101832192 8.680000e-86 327.0
22 TraesCS7B01G081700 chr5A 95.500 200 8 1 680 878 269726154 269726353 5.220000e-83 318.0
23 TraesCS7B01G081700 chr1B 95.500 200 8 1 680 878 473499522 473499323 5.220000e-83 318.0
24 TraesCS7B01G081700 chr1A 90.283 247 18 2 1331 1571 84273578 84273824 5.220000e-83 318.0
25 TraesCS7B01G081700 chr6B 90.083 242 23 1 1331 1572 9966851 9966611 2.430000e-81 313.0
26 TraesCS7B01G081700 chrUn 89.669 242 23 2 1331 1572 75945023 75945262 1.130000e-79 307.0
27 TraesCS7B01G081700 chr3D 93.596 203 13 0 1085 1287 418165588 418165790 1.460000e-78 303.0
28 TraesCS7B01G081700 chr5D 81.421 183 23 8 1447 1620 361404585 361404405 4.370000e-29 139.0
29 TraesCS7B01G081700 chr5D 88.660 97 5 2 3149 3245 547507343 547507433 2.650000e-21 113.0
30 TraesCS7B01G081700 chr5D 93.243 74 5 0 3171 3244 435979362 435979289 3.420000e-20 110.0
31 TraesCS7B01G081700 chr4A 90.291 103 4 5 3143 3245 32411725 32411629 2.630000e-26 130.0
32 TraesCS7B01G081700 chr4A 90.291 103 4 1 3143 3245 677123268 677123364 2.630000e-26 130.0
33 TraesCS7B01G081700 chr4B 87.143 70 5 1 2962 3031 521730735 521730800 3.470000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G081700 chr7B 92061367 92064611 3244 True 5993.000000 5993 100.000 1 3245 1 chr7B.!!$R1 3244
1 TraesCS7B01G081700 chr7D 131268028 131270765 2737 True 1904.500000 2988 90.845 1 2951 2 chr7D.!!$R2 2950
2 TraesCS7B01G081700 chr7A 130090317 130092930 2613 True 1672.000000 2614 89.263 1 2769 2 chr7A.!!$R3 2768
3 TraesCS7B01G081700 chr7A 130167624 130169385 1761 True 260.333333 425 88.917 146 1284 3 chr7A.!!$R4 1138
4 TraesCS7B01G081700 chr6A 17057340 17057856 516 False 549.000000 549 85.637 1004 1560 1 chr6A.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
719 1675 0.042731 TCTCCGAGAATTGACCCCCT 59.957 55.0 0.0 0.0 0.0 4.79 F
855 1811 0.179000 CAGGGGGTCAATTCTCGGAG 59.821 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2994 0.032017 ACGGCACCCTAGAGGAGAAT 60.032 55.0 0.00 0.0 39.89 2.40 R
2366 3384 0.739462 TCAATCCTCGTCGCGCATTT 60.739 50.0 8.75 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.040544 CATGTGTCCGGGTCCAAGC 61.041 63.158 0.00 0.00 0.00 4.01
126 129 5.817816 AGTGTGGAGTTTTGACTTTGAGTAG 59.182 40.000 0.00 0.00 0.00 2.57
127 130 4.574828 TGTGGAGTTTTGACTTTGAGTAGC 59.425 41.667 0.00 0.00 0.00 3.58
128 131 4.574828 GTGGAGTTTTGACTTTGAGTAGCA 59.425 41.667 0.00 0.00 0.00 3.49
164 167 7.864379 TCTCTGATGAAGAACAAAAAGCATTTC 59.136 33.333 0.00 0.00 32.93 2.17
293 306 3.846754 GCACGCTGCAAATGGTTC 58.153 55.556 0.00 0.00 44.26 3.62
294 307 2.082366 GCACGCTGCAAATGGTTCG 61.082 57.895 0.00 0.00 44.26 3.95
295 308 1.282570 CACGCTGCAAATGGTTCGT 59.717 52.632 0.00 0.00 0.00 3.85
296 309 0.515127 CACGCTGCAAATGGTTCGTA 59.485 50.000 0.00 0.00 0.00 3.43
297 310 1.130373 CACGCTGCAAATGGTTCGTAT 59.870 47.619 0.00 0.00 0.00 3.06
298 311 1.130373 ACGCTGCAAATGGTTCGTATG 59.870 47.619 0.00 0.00 0.00 2.39
300 313 1.135431 GCTGCAAATGGTTCGTATGCA 60.135 47.619 0.00 0.00 44.07 3.96
340 376 1.067212 GTGAGGTGAATCGCCGTAGAT 59.933 52.381 7.25 0.00 39.30 1.98
391 435 0.105964 CTGGAACCTGGTGTGTTCGA 59.894 55.000 0.00 0.00 42.36 3.71
395 440 2.000447 GAACCTGGTGTGTTCGATAGC 59.000 52.381 0.00 0.00 33.48 2.97
419 464 2.591715 AGCCACGTCGCTTGCTTT 60.592 55.556 0.31 0.00 34.73 3.51
470 1417 0.249073 CTCCCGGAGTCAAGTATGCG 60.249 60.000 0.73 0.00 0.00 4.73
476 1423 0.530870 GAGTCAAGTATGCGCCCCTC 60.531 60.000 4.18 0.00 0.00 4.30
478 1425 2.588877 CAAGTATGCGCCCCTCGG 60.589 66.667 4.18 0.00 38.94 4.63
679 1635 4.308458 CCGCCACAACGAGACCCA 62.308 66.667 0.00 0.00 34.06 4.51
680 1636 2.738521 CGCCACAACGAGACCCAG 60.739 66.667 0.00 0.00 34.06 4.45
681 1637 2.358737 GCCACAACGAGACCCAGG 60.359 66.667 0.00 0.00 0.00 4.45
682 1638 2.347490 CCACAACGAGACCCAGGG 59.653 66.667 2.85 2.85 0.00 4.45
683 1639 2.358737 CACAACGAGACCCAGGGC 60.359 66.667 4.91 0.00 0.00 5.19
684 1640 3.637273 ACAACGAGACCCAGGGCC 61.637 66.667 4.91 0.00 0.00 5.80
685 1641 3.636231 CAACGAGACCCAGGGCCA 61.636 66.667 4.91 0.00 0.00 5.36
686 1642 3.322466 AACGAGACCCAGGGCCAG 61.322 66.667 4.91 0.00 0.00 4.85
687 1643 4.640690 ACGAGACCCAGGGCCAGT 62.641 66.667 4.91 0.00 0.00 4.00
688 1644 3.322466 CGAGACCCAGGGCCAGTT 61.322 66.667 4.91 0.00 0.00 3.16
689 1645 2.895424 CGAGACCCAGGGCCAGTTT 61.895 63.158 4.91 0.00 0.00 2.66
690 1646 1.460699 GAGACCCAGGGCCAGTTTT 59.539 57.895 4.91 0.00 0.00 2.43
691 1647 0.178961 GAGACCCAGGGCCAGTTTTT 60.179 55.000 4.91 0.00 0.00 1.94
718 1674 0.909623 TTCTCCGAGAATTGACCCCC 59.090 55.000 6.75 0.00 0.00 5.40
719 1675 0.042731 TCTCCGAGAATTGACCCCCT 59.957 55.000 0.00 0.00 0.00 4.79
720 1676 0.466124 CTCCGAGAATTGACCCCCTC 59.534 60.000 0.00 0.00 0.00 4.30
721 1677 0.981277 TCCGAGAATTGACCCCCTCC 60.981 60.000 0.00 0.00 0.00 4.30
722 1678 1.527370 CGAGAATTGACCCCCTCCC 59.473 63.158 0.00 0.00 0.00 4.30
723 1679 1.923586 GAGAATTGACCCCCTCCCC 59.076 63.158 0.00 0.00 0.00 4.81
724 1680 0.919289 GAGAATTGACCCCCTCCCCA 60.919 60.000 0.00 0.00 0.00 4.96
725 1681 0.921256 AGAATTGACCCCCTCCCCAG 60.921 60.000 0.00 0.00 0.00 4.45
726 1682 2.573893 GAATTGACCCCCTCCCCAGC 62.574 65.000 0.00 0.00 0.00 4.85
727 1683 3.603330 ATTGACCCCCTCCCCAGCT 62.603 63.158 0.00 0.00 0.00 4.24
728 1684 3.829311 TTGACCCCCTCCCCAGCTT 62.829 63.158 0.00 0.00 0.00 3.74
729 1685 3.412408 GACCCCCTCCCCAGCTTC 61.412 72.222 0.00 0.00 0.00 3.86
730 1686 3.952799 GACCCCCTCCCCAGCTTCT 62.953 68.421 0.00 0.00 0.00 2.85
731 1687 3.093172 CCCCCTCCCCAGCTTCTC 61.093 72.222 0.00 0.00 0.00 2.87
732 1688 3.093172 CCCCTCCCCAGCTTCTCC 61.093 72.222 0.00 0.00 0.00 3.71
733 1689 3.093172 CCCTCCCCAGCTTCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
734 1690 2.285668 CCTCCCCAGCTTCTCCCA 60.286 66.667 0.00 0.00 0.00 4.37
735 1691 2.373707 CCTCCCCAGCTTCTCCCAG 61.374 68.421 0.00 0.00 0.00 4.45
736 1692 1.306482 CTCCCCAGCTTCTCCCAGA 60.306 63.158 0.00 0.00 0.00 3.86
737 1693 0.911525 CTCCCCAGCTTCTCCCAGAA 60.912 60.000 0.00 0.00 32.50 3.02
738 1694 0.253347 TCCCCAGCTTCTCCCAGAAT 60.253 55.000 0.00 0.00 33.13 2.40
739 1695 0.627986 CCCCAGCTTCTCCCAGAATT 59.372 55.000 0.00 0.00 33.13 2.17
740 1696 1.684248 CCCCAGCTTCTCCCAGAATTG 60.684 57.143 0.00 0.00 33.13 2.32
741 1697 1.684248 CCCAGCTTCTCCCAGAATTGG 60.684 57.143 8.81 8.81 44.60 3.16
742 1698 1.101331 CAGCTTCTCCCAGAATTGGC 58.899 55.000 0.00 0.00 43.58 4.52
743 1699 0.700564 AGCTTCTCCCAGAATTGGCA 59.299 50.000 0.00 0.00 43.58 4.92
744 1700 0.813821 GCTTCTCCCAGAATTGGCAC 59.186 55.000 0.00 0.00 43.58 5.01
745 1701 1.615384 GCTTCTCCCAGAATTGGCACT 60.615 52.381 0.00 0.00 43.58 4.40
746 1702 2.363683 CTTCTCCCAGAATTGGCACTC 58.636 52.381 0.00 0.00 43.58 3.51
747 1703 1.661463 TCTCCCAGAATTGGCACTCT 58.339 50.000 0.00 0.00 43.58 3.24
748 1704 2.832838 TCTCCCAGAATTGGCACTCTA 58.167 47.619 0.00 0.00 43.58 2.43
749 1705 3.387962 TCTCCCAGAATTGGCACTCTAT 58.612 45.455 0.00 0.00 43.58 1.98
750 1706 4.556697 TCTCCCAGAATTGGCACTCTATA 58.443 43.478 0.00 0.00 43.58 1.31
751 1707 5.158141 TCTCCCAGAATTGGCACTCTATAT 58.842 41.667 0.00 0.00 43.58 0.86
752 1708 5.608437 TCTCCCAGAATTGGCACTCTATATT 59.392 40.000 0.00 0.00 43.58 1.28
753 1709 6.101734 TCTCCCAGAATTGGCACTCTATATTT 59.898 38.462 0.00 0.00 43.58 1.40
754 1710 6.672593 TCCCAGAATTGGCACTCTATATTTT 58.327 36.000 0.00 0.00 43.58 1.82
755 1711 6.772716 TCCCAGAATTGGCACTCTATATTTTC 59.227 38.462 0.00 0.00 43.58 2.29
756 1712 6.774656 CCCAGAATTGGCACTCTATATTTTCT 59.225 38.462 0.00 0.00 43.58 2.52
757 1713 7.286316 CCCAGAATTGGCACTCTATATTTTCTT 59.714 37.037 0.00 0.00 43.58 2.52
758 1714 9.342308 CCAGAATTGGCACTCTATATTTTCTTA 57.658 33.333 0.00 0.00 37.73 2.10
760 1716 9.905713 AGAATTGGCACTCTATATTTTCTTACA 57.094 29.630 0.00 0.00 0.00 2.41
765 1721 9.120538 TGGCACTCTATATTTTCTTACAATTCC 57.879 33.333 0.00 0.00 0.00 3.01
766 1722 9.343539 GGCACTCTATATTTTCTTACAATTCCT 57.656 33.333 0.00 0.00 0.00 3.36
824 1780 4.796038 AAAGATGAAGTGGCAATTCTGG 57.204 40.909 25.65 0.00 0.00 3.86
825 1781 3.726557 AGATGAAGTGGCAATTCTGGA 57.273 42.857 25.65 8.76 0.00 3.86
826 1782 4.038271 AGATGAAGTGGCAATTCTGGAA 57.962 40.909 25.65 8.41 0.00 3.53
827 1783 4.015084 AGATGAAGTGGCAATTCTGGAAG 58.985 43.478 25.65 0.00 0.00 3.46
828 1784 3.507162 TGAAGTGGCAATTCTGGAAGA 57.493 42.857 25.65 4.27 44.68 2.87
837 1793 3.905454 TCTGGAAGAAGCTGGGCA 58.095 55.556 0.00 0.00 42.31 5.36
838 1794 1.681666 TCTGGAAGAAGCTGGGCAG 59.318 57.895 0.00 0.00 42.31 4.85
839 1795 1.378250 CTGGAAGAAGCTGGGCAGG 60.378 63.158 0.00 0.00 34.07 4.85
840 1796 2.044551 GGAAGAAGCTGGGCAGGG 60.045 66.667 0.00 0.00 0.00 4.45
841 1797 2.044551 GAAGAAGCTGGGCAGGGG 60.045 66.667 0.00 0.00 0.00 4.79
842 1798 3.651980 GAAGAAGCTGGGCAGGGGG 62.652 68.421 0.00 0.00 0.00 5.40
844 1800 4.432741 GAAGCTGGGCAGGGGGTC 62.433 72.222 0.00 0.00 0.00 4.46
847 1803 4.066139 GCTGGGCAGGGGGTCAAT 62.066 66.667 0.00 0.00 0.00 2.57
848 1804 2.772924 CTGGGCAGGGGGTCAATT 59.227 61.111 0.00 0.00 0.00 2.32
849 1805 1.380380 CTGGGCAGGGGGTCAATTC 60.380 63.158 0.00 0.00 0.00 2.17
850 1806 1.856873 TGGGCAGGGGGTCAATTCT 60.857 57.895 0.00 0.00 0.00 2.40
851 1807 1.076705 GGGCAGGGGGTCAATTCTC 60.077 63.158 0.00 0.00 0.00 2.87
852 1808 1.452108 GGCAGGGGGTCAATTCTCG 60.452 63.158 0.00 0.00 0.00 4.04
853 1809 1.452108 GCAGGGGGTCAATTCTCGG 60.452 63.158 0.00 0.00 0.00 4.63
854 1810 1.910580 GCAGGGGGTCAATTCTCGGA 61.911 60.000 0.00 0.00 0.00 4.55
855 1811 0.179000 CAGGGGGTCAATTCTCGGAG 59.821 60.000 0.00 0.00 0.00 4.63
856 1812 0.042731 AGGGGGTCAATTCTCGGAGA 59.957 55.000 2.97 2.97 0.00 3.71
857 1813 0.909623 GGGGGTCAATTCTCGGAGAA 59.090 55.000 21.69 21.69 38.78 2.87
858 1814 1.490910 GGGGGTCAATTCTCGGAGAAT 59.509 52.381 24.03 24.03 46.22 2.40
865 1821 2.806945 ATTCTCGGAGAATTGCCCAA 57.193 45.000 24.03 1.04 41.90 4.12
866 1822 2.577606 TTCTCGGAGAATTGCCCAAA 57.422 45.000 16.19 0.00 34.09 3.28
867 1823 2.577606 TCTCGGAGAATTGCCCAAAA 57.422 45.000 4.96 0.00 34.09 2.44
868 1824 2.436417 TCTCGGAGAATTGCCCAAAAG 58.564 47.619 4.96 0.00 34.09 2.27
869 1825 2.039746 TCTCGGAGAATTGCCCAAAAGA 59.960 45.455 4.96 0.00 34.09 2.52
870 1826 2.819608 CTCGGAGAATTGCCCAAAAGAA 59.180 45.455 0.00 0.00 34.09 2.52
871 1827 2.556622 TCGGAGAATTGCCCAAAAGAAC 59.443 45.455 0.00 0.00 0.00 3.01
872 1828 2.558359 CGGAGAATTGCCCAAAAGAACT 59.442 45.455 0.00 0.00 0.00 3.01
873 1829 3.612479 CGGAGAATTGCCCAAAAGAACTG 60.612 47.826 0.00 0.00 0.00 3.16
874 1830 3.306294 GGAGAATTGCCCAAAAGAACTGG 60.306 47.826 0.00 0.00 0.00 4.00
875 1831 2.037641 AGAATTGCCCAAAAGAACTGGC 59.962 45.455 0.00 0.00 44.27 4.85
876 1832 0.686789 ATTGCCCAAAAGAACTGGCC 59.313 50.000 0.00 0.00 43.35 5.36
877 1833 1.406860 TTGCCCAAAAGAACTGGCCC 61.407 55.000 0.00 0.00 43.35 5.80
878 1834 2.583441 GCCCAAAAGAACTGGCCCC 61.583 63.158 0.00 0.00 37.94 5.80
879 1835 1.913262 CCCAAAAGAACTGGCCCCC 60.913 63.158 0.00 0.00 32.10 5.40
880 1836 2.275380 CCAAAAGAACTGGCCCCCG 61.275 63.158 0.00 0.00 0.00 5.73
881 1837 2.117423 AAAAGAACTGGCCCCCGG 59.883 61.111 0.00 0.00 35.68 5.73
928 1888 2.184830 ACGCACGCCTCGCTCTATA 61.185 57.895 0.00 0.00 0.00 1.31
946 1911 1.836999 TAGCTTTGCTTCCCTCGCCA 61.837 55.000 0.00 0.00 40.44 5.69
1106 2084 4.351938 CGAGGACGCGTGGGACAA 62.352 66.667 20.70 0.00 44.16 3.18
1111 2089 2.027625 GACGCGTGGGACAAGAAGG 61.028 63.158 20.70 0.00 44.16 3.46
1320 2319 3.128188 CAGGAGCAGCAGCAGCAG 61.128 66.667 12.92 0.00 45.49 4.24
1416 2415 3.691342 CTCCGGGACAAGGACGCA 61.691 66.667 0.00 0.00 33.58 5.24
1476 2475 1.373497 CGTCTGCCTCAGCGAGTTT 60.373 57.895 0.00 0.00 44.31 2.66
1678 2677 1.522092 GAGGTGGCCATCGACATGA 59.478 57.895 9.72 0.00 30.57 3.07
1686 2685 0.875908 CCATCGACATGAACCGCGAT 60.876 55.000 8.23 0.00 43.45 4.58
1824 2823 4.154347 GGCCACTCCCTCTCTGCG 62.154 72.222 0.00 0.00 0.00 5.18
1890 2889 2.267642 GTGCGCAGGGACATGGTA 59.732 61.111 12.22 0.00 34.18 3.25
1995 2994 1.080093 GTCGTTCATCGCCAGGACA 60.080 57.895 0.00 0.00 39.67 4.02
2106 3105 2.978010 CCGCTGCCAAGAACCGTT 60.978 61.111 0.00 0.00 0.00 4.44
2263 3271 2.587322 AAAGCGGCGGGATTCGATCA 62.587 55.000 9.78 0.00 42.43 2.92
2366 3384 1.043116 AGCGGGTCGATCAGGAATCA 61.043 55.000 0.00 0.00 33.65 2.57
2576 3612 3.628008 TCGGTCTCCTGTAGATTGCTTA 58.372 45.455 0.00 0.00 36.36 3.09
2577 3613 4.215908 TCGGTCTCCTGTAGATTGCTTAT 58.784 43.478 0.00 0.00 36.36 1.73
2620 3656 4.493545 GGCGTACATACCGTTGAAAGATTG 60.494 45.833 0.00 0.00 0.00 2.67
2680 3720 2.163412 GGTCGGTGTGTATACGTTGGTA 59.837 50.000 0.00 0.00 0.00 3.25
2693 3733 4.295141 ACGTTGGTATTCAAAGATCCCA 57.705 40.909 0.00 0.00 38.06 4.37
2700 3740 1.909700 TTCAAAGATCCCAGTGTGGC 58.090 50.000 0.00 0.00 35.79 5.01
2769 3809 0.252193 TTTCCTCCATTGGGGGCTTG 60.252 55.000 17.64 0.00 37.22 4.01
2773 3813 0.967380 CTCCATTGGGGGCTTGTGTC 60.967 60.000 2.09 0.00 37.22 3.67
2819 3859 1.097547 AAGGCAGCATGTATGACCGC 61.098 55.000 0.00 0.00 39.31 5.68
2840 3880 0.597568 CGCTTCCATGTTTTCTGCCA 59.402 50.000 0.00 0.00 0.00 4.92
2874 3914 1.613437 CAAGCCATCCTCACCGTTTTT 59.387 47.619 0.00 0.00 0.00 1.94
2875 3915 1.247567 AGCCATCCTCACCGTTTTTG 58.752 50.000 0.00 0.00 0.00 2.44
2886 3926 4.515361 TCACCGTTTTTGTGAAGAACCTA 58.485 39.130 0.00 0.00 39.66 3.08
2896 3936 5.599999 TGTGAAGAACCTAGAATCCTAGC 57.400 43.478 0.00 0.00 40.78 3.42
2904 3944 2.088423 CTAGAATCCTAGCCGCGATCT 58.912 52.381 8.23 6.91 36.32 2.75
2905 3945 0.885196 AGAATCCTAGCCGCGATCTC 59.115 55.000 8.23 0.00 0.00 2.75
2920 3960 4.862018 CGCGATCTCTTTCTCTCTTTTTCT 59.138 41.667 0.00 0.00 0.00 2.52
2923 3963 7.233689 GCGATCTCTTTCTCTCTTTTTCTTTC 58.766 38.462 0.00 0.00 0.00 2.62
2930 3970 8.687242 TCTTTCTCTCTTTTTCTTTCCCTTTTC 58.313 33.333 0.00 0.00 0.00 2.29
2936 3976 5.902431 TCTTTTTCTTTCCCTTTTCCCATGA 59.098 36.000 0.00 0.00 0.00 3.07
2946 3986 4.347607 CCTTTTCCCATGATTCCTGTTCT 58.652 43.478 0.00 0.00 0.00 3.01
2951 3991 5.102953 TCCCATGATTCCTGTTCTAGTTG 57.897 43.478 0.00 0.00 0.00 3.16
2952 3992 4.782691 TCCCATGATTCCTGTTCTAGTTGA 59.217 41.667 0.00 0.00 0.00 3.18
2953 3993 5.250543 TCCCATGATTCCTGTTCTAGTTGAA 59.749 40.000 0.00 0.00 0.00 2.69
2966 4006 7.948278 GTTCTAGTTGAACGCCAATATCTAT 57.052 36.000 1.68 0.00 44.49 1.98
2967 4007 8.008902 GTTCTAGTTGAACGCCAATATCTATC 57.991 38.462 1.68 0.00 44.49 2.08
2968 4008 7.526142 TCTAGTTGAACGCCAATATCTATCT 57.474 36.000 0.00 0.00 37.08 1.98
2969 4009 8.631480 TCTAGTTGAACGCCAATATCTATCTA 57.369 34.615 0.00 0.00 37.08 1.98
2970 4010 8.731605 TCTAGTTGAACGCCAATATCTATCTAG 58.268 37.037 0.00 0.00 37.08 2.43
2971 4011 7.291411 AGTTGAACGCCAATATCTATCTAGT 57.709 36.000 0.00 0.00 37.08 2.57
2972 4012 7.727181 AGTTGAACGCCAATATCTATCTAGTT 58.273 34.615 0.00 0.00 37.08 2.24
2973 4013 8.857098 AGTTGAACGCCAATATCTATCTAGTTA 58.143 33.333 0.00 0.00 37.08 2.24
2974 4014 8.913656 GTTGAACGCCAATATCTATCTAGTTAC 58.086 37.037 0.00 0.00 37.08 2.50
2975 4015 8.405418 TGAACGCCAATATCTATCTAGTTACT 57.595 34.615 0.00 0.00 0.00 2.24
2976 4016 9.511272 TGAACGCCAATATCTATCTAGTTACTA 57.489 33.333 0.00 0.00 0.00 1.82
2979 4019 8.460428 ACGCCAATATCTATCTAGTTACTAAGC 58.540 37.037 0.00 0.00 0.00 3.09
2980 4020 8.679100 CGCCAATATCTATCTAGTTACTAAGCT 58.321 37.037 0.00 0.00 0.00 3.74
2994 4034 8.738645 AGTTACTAAGCTCCCATAATTTTCTG 57.261 34.615 0.00 0.00 0.00 3.02
2995 4035 7.775561 AGTTACTAAGCTCCCATAATTTTCTGG 59.224 37.037 0.00 0.00 0.00 3.86
2996 4036 4.889995 ACTAAGCTCCCATAATTTTCTGGC 59.110 41.667 0.00 0.00 0.00 4.85
2997 4037 2.670939 AGCTCCCATAATTTTCTGGCC 58.329 47.619 0.00 0.00 0.00 5.36
2998 4038 2.245806 AGCTCCCATAATTTTCTGGCCT 59.754 45.455 3.32 0.00 0.00 5.19
2999 4039 2.363359 GCTCCCATAATTTTCTGGCCTG 59.637 50.000 3.32 2.92 0.00 4.85
3000 4040 3.635591 CTCCCATAATTTTCTGGCCTGT 58.364 45.455 3.32 0.00 0.00 4.00
3001 4041 3.364549 TCCCATAATTTTCTGGCCTGTG 58.635 45.455 3.32 0.00 0.00 3.66
3002 4042 2.431782 CCCATAATTTTCTGGCCTGTGG 59.568 50.000 3.32 5.23 0.00 4.17
3003 4043 3.099141 CCATAATTTTCTGGCCTGTGGT 58.901 45.455 3.32 0.00 0.00 4.16
3004 4044 3.119029 CCATAATTTTCTGGCCTGTGGTG 60.119 47.826 3.32 0.00 0.00 4.17
3005 4045 1.341080 AATTTTCTGGCCTGTGGTGG 58.659 50.000 3.32 0.00 0.00 4.61
3027 4067 4.280019 GGGGTGTGGAGGGCGTTT 62.280 66.667 0.00 0.00 0.00 3.60
3028 4068 2.671963 GGGTGTGGAGGGCGTTTC 60.672 66.667 0.00 0.00 0.00 2.78
3029 4069 2.430367 GGTGTGGAGGGCGTTTCT 59.570 61.111 0.00 0.00 0.00 2.52
3030 4070 1.675219 GGTGTGGAGGGCGTTTCTA 59.325 57.895 0.00 0.00 0.00 2.10
3031 4071 0.252197 GGTGTGGAGGGCGTTTCTAT 59.748 55.000 0.00 0.00 0.00 1.98
3032 4072 1.369625 GTGTGGAGGGCGTTTCTATG 58.630 55.000 0.00 0.00 0.00 2.23
3033 4073 0.392461 TGTGGAGGGCGTTTCTATGC 60.392 55.000 0.00 0.00 35.47 3.14
3034 4074 0.392461 GTGGAGGGCGTTTCTATGCA 60.392 55.000 0.00 0.00 38.06 3.96
3035 4075 0.546122 TGGAGGGCGTTTCTATGCAT 59.454 50.000 3.79 3.79 38.06 3.96
3036 4076 0.947244 GGAGGGCGTTTCTATGCATG 59.053 55.000 10.16 0.00 38.06 4.06
3037 4077 1.668419 GAGGGCGTTTCTATGCATGT 58.332 50.000 10.16 0.00 38.06 3.21
3038 4078 2.017049 GAGGGCGTTTCTATGCATGTT 58.983 47.619 10.16 0.00 38.06 2.71
3039 4079 2.423538 GAGGGCGTTTCTATGCATGTTT 59.576 45.455 10.16 0.00 38.06 2.83
3040 4080 2.164219 AGGGCGTTTCTATGCATGTTTG 59.836 45.455 10.16 0.00 38.06 2.93
3051 4091 2.232239 GCATGTTTGCGAGTGTGTAG 57.768 50.000 0.00 0.00 39.49 2.74
3052 4092 1.725931 GCATGTTTGCGAGTGTGTAGC 60.726 52.381 0.00 0.00 39.49 3.58
3053 4093 1.530720 CATGTTTGCGAGTGTGTAGCA 59.469 47.619 0.00 0.00 39.33 3.49
3081 4121 2.990967 CAACCATGCAACGCCCCT 60.991 61.111 0.00 0.00 0.00 4.79
3082 4122 2.203625 AACCATGCAACGCCCCTT 60.204 55.556 0.00 0.00 0.00 3.95
3083 4123 2.573083 AACCATGCAACGCCCCTTG 61.573 57.895 0.00 0.00 0.00 3.61
3084 4124 4.440127 CCATGCAACGCCCCTTGC 62.440 66.667 0.00 1.77 45.80 4.01
3085 4125 4.440127 CATGCAACGCCCCTTGCC 62.440 66.667 6.07 0.00 45.13 4.52
3086 4126 4.992740 ATGCAACGCCCCTTGCCA 62.993 61.111 6.07 0.00 45.13 4.92
3089 4129 2.033448 CAACGCCCCTTGCCACTA 59.967 61.111 0.00 0.00 36.24 2.74
3090 4130 2.033602 AACGCCCCTTGCCACTAC 59.966 61.111 0.00 0.00 36.24 2.73
3091 4131 3.894547 AACGCCCCTTGCCACTACG 62.895 63.158 0.00 0.00 36.24 3.51
3092 4132 4.388499 CGCCCCTTGCCACTACGT 62.388 66.667 0.00 0.00 36.24 3.57
3093 4133 2.033602 GCCCCTTGCCACTACGTT 59.966 61.111 0.00 0.00 0.00 3.99
3094 4134 2.332654 GCCCCTTGCCACTACGTTG 61.333 63.158 0.00 0.00 0.00 4.10
3095 4135 1.072505 CCCCTTGCCACTACGTTGT 59.927 57.895 0.00 0.00 0.00 3.32
3096 4136 0.322322 CCCCTTGCCACTACGTTGTA 59.678 55.000 1.45 0.00 0.00 2.41
3097 4137 1.065709 CCCCTTGCCACTACGTTGTAT 60.066 52.381 1.45 0.00 0.00 2.29
3098 4138 2.168936 CCCCTTGCCACTACGTTGTATA 59.831 50.000 1.45 0.00 0.00 1.47
3099 4139 3.454375 CCCTTGCCACTACGTTGTATAG 58.546 50.000 1.45 0.00 0.00 1.31
3100 4140 3.118884 CCCTTGCCACTACGTTGTATAGT 60.119 47.826 1.45 0.00 32.98 2.12
3101 4141 4.110482 CCTTGCCACTACGTTGTATAGTC 58.890 47.826 1.45 0.00 30.22 2.59
3102 4142 4.381185 CCTTGCCACTACGTTGTATAGTCA 60.381 45.833 1.45 0.00 30.22 3.41
3103 4143 4.787260 TGCCACTACGTTGTATAGTCAA 57.213 40.909 1.45 0.00 30.22 3.18
3104 4144 5.333299 TGCCACTACGTTGTATAGTCAAT 57.667 39.130 1.45 0.00 30.22 2.57
3105 4145 6.453926 TGCCACTACGTTGTATAGTCAATA 57.546 37.500 1.45 0.00 30.22 1.90
3106 4146 6.865411 TGCCACTACGTTGTATAGTCAATAA 58.135 36.000 1.45 0.00 30.22 1.40
3107 4147 7.494211 TGCCACTACGTTGTATAGTCAATAAT 58.506 34.615 1.45 0.00 30.22 1.28
3108 4148 7.982919 TGCCACTACGTTGTATAGTCAATAATT 59.017 33.333 1.45 0.00 30.22 1.40
3109 4149 9.467258 GCCACTACGTTGTATAGTCAATAATTA 57.533 33.333 1.45 0.00 30.22 1.40
3115 4155 8.823818 ACGTTGTATAGTCAATAATTAACAGCC 58.176 33.333 0.00 0.00 0.00 4.85
3116 4156 8.002107 CGTTGTATAGTCAATAATTAACAGCCG 58.998 37.037 0.00 0.00 0.00 5.52
3117 4157 9.037737 GTTGTATAGTCAATAATTAACAGCCGA 57.962 33.333 0.00 0.00 0.00 5.54
3118 4158 9.602568 TTGTATAGTCAATAATTAACAGCCGAA 57.397 29.630 0.00 0.00 0.00 4.30
3119 4159 9.772973 TGTATAGTCAATAATTAACAGCCGAAT 57.227 29.630 0.00 0.00 0.00 3.34
3122 4162 7.624360 AGTCAATAATTAACAGCCGAATTGA 57.376 32.000 0.00 0.00 31.41 2.57
3123 4163 8.050778 AGTCAATAATTAACAGCCGAATTGAA 57.949 30.769 0.00 0.00 34.65 2.69
3124 4164 8.519526 AGTCAATAATTAACAGCCGAATTGAAA 58.480 29.630 0.00 0.00 34.65 2.69
3125 4165 9.301153 GTCAATAATTAACAGCCGAATTGAAAT 57.699 29.630 0.00 0.00 34.65 2.17
3126 4166 9.515020 TCAATAATTAACAGCCGAATTGAAATC 57.485 29.630 0.00 0.00 31.06 2.17
3127 4167 9.299963 CAATAATTAACAGCCGAATTGAAATCA 57.700 29.630 0.00 0.00 0.00 2.57
3128 4168 9.868277 AATAATTAACAGCCGAATTGAAATCAA 57.132 25.926 0.00 0.00 40.51 2.57
3129 4169 9.868277 ATAATTAACAGCCGAATTGAAATCAAA 57.132 25.926 0.00 0.00 39.55 2.69
3130 4170 8.600449 AATTAACAGCCGAATTGAAATCAAAA 57.400 26.923 0.00 0.00 39.55 2.44
3131 4171 7.636259 TTAACAGCCGAATTGAAATCAAAAG 57.364 32.000 0.00 0.00 39.55 2.27
3132 4172 4.559153 ACAGCCGAATTGAAATCAAAAGG 58.441 39.130 0.00 5.46 39.55 3.11
3133 4173 4.280677 ACAGCCGAATTGAAATCAAAAGGA 59.719 37.500 14.78 0.00 39.55 3.36
3134 4174 4.860907 CAGCCGAATTGAAATCAAAAGGAG 59.139 41.667 14.78 6.38 39.55 3.69
3135 4175 4.766891 AGCCGAATTGAAATCAAAAGGAGA 59.233 37.500 14.78 0.00 39.55 3.71
3136 4176 5.098211 GCCGAATTGAAATCAAAAGGAGAG 58.902 41.667 14.78 0.00 39.55 3.20
3137 4177 5.106157 GCCGAATTGAAATCAAAAGGAGAGA 60.106 40.000 14.78 0.00 39.55 3.10
3138 4178 6.549952 CCGAATTGAAATCAAAAGGAGAGAG 58.450 40.000 0.00 0.00 39.55 3.20
3139 4179 6.026513 CGAATTGAAATCAAAAGGAGAGAGC 58.973 40.000 0.00 0.00 39.55 4.09
3140 4180 5.911378 ATTGAAATCAAAAGGAGAGAGCC 57.089 39.130 0.00 0.00 39.55 4.70
3141 4181 3.338249 TGAAATCAAAAGGAGAGAGCCG 58.662 45.455 0.00 0.00 0.00 5.52
3142 4182 2.409948 AATCAAAAGGAGAGAGCCGG 57.590 50.000 0.00 0.00 0.00 6.13
3143 4183 1.573108 ATCAAAAGGAGAGAGCCGGA 58.427 50.000 5.05 0.00 0.00 5.14
3144 4184 0.898320 TCAAAAGGAGAGAGCCGGAG 59.102 55.000 5.05 0.00 0.00 4.63
3145 4185 0.742635 CAAAAGGAGAGAGCCGGAGC 60.743 60.000 5.05 0.00 40.32 4.70
3146 4186 2.232298 AAAAGGAGAGAGCCGGAGCG 62.232 60.000 5.05 0.00 46.67 5.03
3149 4189 4.863925 GAGAGAGCCGGAGCGCAC 62.864 72.222 11.47 1.97 46.67 5.34
3151 4191 4.521062 GAGAGCCGGAGCGCACAT 62.521 66.667 11.47 0.00 46.67 3.21
3152 4192 4.827087 AGAGCCGGAGCGCACATG 62.827 66.667 11.47 0.00 46.67 3.21
3163 4203 3.260483 GCACATGGCTCTCGCGAG 61.260 66.667 30.03 30.03 40.25 5.03
3171 4211 4.567385 CTCTCGCGAGCCAGAGCC 62.567 72.222 30.97 0.00 41.25 4.70
3204 4244 4.933064 CGCCGCCGTCCTGATCTC 62.933 72.222 0.00 0.00 0.00 2.75
3205 4245 3.532155 GCCGCCGTCCTGATCTCT 61.532 66.667 0.00 0.00 0.00 3.10
3206 4246 2.725008 CCGCCGTCCTGATCTCTC 59.275 66.667 0.00 0.00 0.00 3.20
3207 4247 1.826054 CCGCCGTCCTGATCTCTCT 60.826 63.158 0.00 0.00 0.00 3.10
3208 4248 1.388065 CCGCCGTCCTGATCTCTCTT 61.388 60.000 0.00 0.00 0.00 2.85
3209 4249 0.030101 CGCCGTCCTGATCTCTCTTC 59.970 60.000 0.00 0.00 0.00 2.87
3210 4250 1.398692 GCCGTCCTGATCTCTCTTCT 58.601 55.000 0.00 0.00 0.00 2.85
3211 4251 1.754226 GCCGTCCTGATCTCTCTTCTT 59.246 52.381 0.00 0.00 0.00 2.52
3212 4252 2.223711 GCCGTCCTGATCTCTCTTCTTC 60.224 54.545 0.00 0.00 0.00 2.87
3213 4253 2.032799 CCGTCCTGATCTCTCTTCTTCG 59.967 54.545 0.00 0.00 0.00 3.79
3214 4254 2.032799 CGTCCTGATCTCTCTTCTTCGG 59.967 54.545 0.00 0.00 0.00 4.30
3215 4255 2.028130 TCCTGATCTCTCTTCTTCGGC 58.972 52.381 0.00 0.00 0.00 5.54
3216 4256 1.068434 CCTGATCTCTCTTCTTCGGCC 59.932 57.143 0.00 0.00 0.00 6.13
3217 4257 2.031120 CTGATCTCTCTTCTTCGGCCT 58.969 52.381 0.00 0.00 0.00 5.19
3218 4258 2.028130 TGATCTCTCTTCTTCGGCCTC 58.972 52.381 0.00 0.00 0.00 4.70
3219 4259 1.339929 GATCTCTCTTCTTCGGCCTCC 59.660 57.143 0.00 0.00 0.00 4.30
3220 4260 0.684805 TCTCTCTTCTTCGGCCTCCC 60.685 60.000 0.00 0.00 0.00 4.30
3221 4261 1.681486 CTCTCTTCTTCGGCCTCCCC 61.681 65.000 0.00 0.00 0.00 4.81
3222 4262 1.687493 CTCTTCTTCGGCCTCCCCT 60.687 63.158 0.00 0.00 0.00 4.79
3223 4263 1.965754 CTCTTCTTCGGCCTCCCCTG 61.966 65.000 0.00 0.00 0.00 4.45
3224 4264 3.689002 CTTCTTCGGCCTCCCCTGC 62.689 68.421 0.00 0.00 0.00 4.85
3226 4266 4.785453 CTTCGGCCTCCCCTGCAC 62.785 72.222 0.00 0.00 0.00 4.57
3241 4281 3.402681 CACCTGCCCGGTCCAGAT 61.403 66.667 18.08 0.84 44.93 2.90
3242 4282 3.083997 ACCTGCCCGGTCCAGATC 61.084 66.667 18.08 0.00 44.93 2.75
3243 4283 3.866582 CCTGCCCGGTCCAGATCC 61.867 72.222 18.08 0.00 32.03 3.36
3244 4284 4.227134 CTGCCCGGTCCAGATCCG 62.227 72.222 12.66 0.00 46.49 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.698165 GTTGAGCTCGAATCACGACA 58.302 50.000 4.86 0.00 46.45 4.35
39 40 2.351276 GCTTGGACCCGGACACAT 59.649 61.111 0.73 0.00 0.00 3.21
42 43 4.308458 CACGCTTGGACCCGGACA 62.308 66.667 0.73 0.00 0.00 4.02
56 57 4.208253 CCCGAAAACAAAGAAAAATCCACG 59.792 41.667 0.00 0.00 0.00 4.94
139 142 7.115947 GGAAATGCTTTTTGTTCTTCATCAGAG 59.884 37.037 0.00 0.00 31.12 3.35
293 306 4.334712 CAGATCCTCTGTCGTTGCATACG 61.335 52.174 13.09 13.09 42.51 3.06
294 307 3.119291 CAGATCCTCTGTCGTTGCATAC 58.881 50.000 0.00 0.00 39.58 2.39
295 308 3.023832 TCAGATCCTCTGTCGTTGCATA 58.976 45.455 4.21 0.00 44.58 3.14
296 309 1.827344 TCAGATCCTCTGTCGTTGCAT 59.173 47.619 4.21 0.00 44.58 3.96
297 310 1.256812 TCAGATCCTCTGTCGTTGCA 58.743 50.000 4.21 0.00 44.58 4.08
298 311 2.159184 TGATCAGATCCTCTGTCGTTGC 60.159 50.000 8.00 0.00 44.58 4.17
300 313 3.130164 CACTGATCAGATCCTCTGTCGTT 59.870 47.826 29.27 0.00 44.58 3.85
340 376 5.750547 GTGCGACTATGAGATTCAGATCAAA 59.249 40.000 0.00 0.00 34.60 2.69
391 435 2.124983 CGTGGCTGTGGCTGCTAT 60.125 61.111 0.00 0.00 38.73 2.97
419 464 2.780094 CGGTGGTGCAAAACTGGCA 61.780 57.895 0.00 0.00 39.32 4.92
476 1423 1.373497 GGCACCAGATAGATCGCCG 60.373 63.158 0.00 0.00 0.00 6.46
478 1425 0.941463 CACGGCACCAGATAGATCGC 60.941 60.000 0.00 0.00 0.00 4.58
698 1654 1.490910 GGGGGTCAATTCTCGGAGAAT 59.509 52.381 24.03 24.03 46.22 2.40
699 1655 0.909623 GGGGGTCAATTCTCGGAGAA 59.090 55.000 21.69 21.69 38.78 2.87
700 1656 0.042731 AGGGGGTCAATTCTCGGAGA 59.957 55.000 2.97 2.97 0.00 3.71
701 1657 0.466124 GAGGGGGTCAATTCTCGGAG 59.534 60.000 0.00 0.00 0.00 4.63
702 1658 0.981277 GGAGGGGGTCAATTCTCGGA 60.981 60.000 0.00 0.00 0.00 4.55
703 1659 1.527370 GGAGGGGGTCAATTCTCGG 59.473 63.158 0.00 0.00 0.00 4.63
704 1660 1.527370 GGGAGGGGGTCAATTCTCG 59.473 63.158 0.00 0.00 0.00 4.04
705 1661 0.919289 TGGGGAGGGGGTCAATTCTC 60.919 60.000 0.00 0.00 0.00 2.87
706 1662 0.921256 CTGGGGAGGGGGTCAATTCT 60.921 60.000 0.00 0.00 0.00 2.40
707 1663 1.615262 CTGGGGAGGGGGTCAATTC 59.385 63.158 0.00 0.00 0.00 2.17
708 1664 2.626467 GCTGGGGAGGGGGTCAATT 61.626 63.158 0.00 0.00 0.00 2.32
709 1665 3.023735 GCTGGGGAGGGGGTCAAT 61.024 66.667 0.00 0.00 0.00 2.57
710 1666 3.829311 AAGCTGGGGAGGGGGTCAA 62.829 63.158 0.00 0.00 0.00 3.18
711 1667 4.285790 AAGCTGGGGAGGGGGTCA 62.286 66.667 0.00 0.00 0.00 4.02
712 1668 3.412408 GAAGCTGGGGAGGGGGTC 61.412 72.222 0.00 0.00 0.00 4.46
713 1669 3.952799 GAGAAGCTGGGGAGGGGGT 62.953 68.421 0.00 0.00 0.00 4.95
714 1670 3.093172 GAGAAGCTGGGGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
715 1671 3.093172 GGAGAAGCTGGGGAGGGG 61.093 72.222 0.00 0.00 0.00 4.79
716 1672 3.093172 GGGAGAAGCTGGGGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
717 1673 2.285668 TGGGAGAAGCTGGGGAGG 60.286 66.667 0.00 0.00 0.00 4.30
718 1674 0.911525 TTCTGGGAGAAGCTGGGGAG 60.912 60.000 0.00 0.00 29.50 4.30
719 1675 0.253347 ATTCTGGGAGAAGCTGGGGA 60.253 55.000 0.00 0.00 37.69 4.81
720 1676 0.627986 AATTCTGGGAGAAGCTGGGG 59.372 55.000 0.00 0.00 37.69 4.96
721 1677 1.684248 CCAATTCTGGGAGAAGCTGGG 60.684 57.143 0.00 0.00 37.69 4.45
722 1678 1.760192 CCAATTCTGGGAGAAGCTGG 58.240 55.000 0.00 0.00 37.69 4.85
723 1679 1.101331 GCCAATTCTGGGAGAAGCTG 58.899 55.000 0.00 0.00 43.74 4.24
724 1680 0.700564 TGCCAATTCTGGGAGAAGCT 59.299 50.000 0.00 0.00 43.74 3.74
725 1681 0.813821 GTGCCAATTCTGGGAGAAGC 59.186 55.000 0.00 0.00 44.94 3.86
726 1682 2.026449 AGAGTGCCAATTCTGGGAGAAG 60.026 50.000 0.00 0.00 44.94 2.85
727 1683 1.988107 AGAGTGCCAATTCTGGGAGAA 59.012 47.619 0.00 0.00 44.94 2.87
728 1684 1.661463 AGAGTGCCAATTCTGGGAGA 58.339 50.000 0.00 0.00 44.94 3.71
729 1685 3.853355 ATAGAGTGCCAATTCTGGGAG 57.147 47.619 0.00 0.00 44.94 4.30
730 1686 5.912149 AATATAGAGTGCCAATTCTGGGA 57.088 39.130 0.00 0.00 43.74 4.37
731 1687 6.774656 AGAAAATATAGAGTGCCAATTCTGGG 59.225 38.462 0.00 0.00 43.74 4.45
732 1688 7.814264 AGAAAATATAGAGTGCCAATTCTGG 57.186 36.000 0.00 0.00 46.65 3.86
734 1690 9.905713 TGTAAGAAAATATAGAGTGCCAATTCT 57.094 29.630 0.00 0.00 0.00 2.40
739 1695 9.120538 GGAATTGTAAGAAAATATAGAGTGCCA 57.879 33.333 0.00 0.00 0.00 4.92
740 1696 9.343539 AGGAATTGTAAGAAAATATAGAGTGCC 57.656 33.333 0.00 0.00 0.00 5.01
801 1757 5.305128 TCCAGAATTGCCACTTCATCTTTTT 59.695 36.000 0.00 0.00 0.00 1.94
802 1758 4.834496 TCCAGAATTGCCACTTCATCTTTT 59.166 37.500 0.00 0.00 0.00 2.27
803 1759 4.410099 TCCAGAATTGCCACTTCATCTTT 58.590 39.130 0.00 0.00 0.00 2.52
804 1760 4.038271 TCCAGAATTGCCACTTCATCTT 57.962 40.909 0.00 0.00 0.00 2.40
805 1761 3.726557 TCCAGAATTGCCACTTCATCT 57.273 42.857 0.00 0.00 0.00 2.90
806 1762 4.012374 TCTTCCAGAATTGCCACTTCATC 58.988 43.478 0.00 0.00 0.00 2.92
807 1763 4.038271 TCTTCCAGAATTGCCACTTCAT 57.962 40.909 0.00 0.00 0.00 2.57
808 1764 3.507162 TCTTCCAGAATTGCCACTTCA 57.493 42.857 0.00 0.00 0.00 3.02
809 1765 3.366781 GCTTCTTCCAGAATTGCCACTTC 60.367 47.826 0.00 0.00 33.13 3.01
810 1766 2.560105 GCTTCTTCCAGAATTGCCACTT 59.440 45.455 0.00 0.00 33.13 3.16
811 1767 2.165998 GCTTCTTCCAGAATTGCCACT 58.834 47.619 0.00 0.00 33.13 4.00
812 1768 2.094854 CAGCTTCTTCCAGAATTGCCAC 60.095 50.000 0.00 0.00 33.13 5.01
813 1769 2.165167 CAGCTTCTTCCAGAATTGCCA 58.835 47.619 0.00 0.00 33.13 4.92
814 1770 1.475682 CCAGCTTCTTCCAGAATTGCC 59.524 52.381 0.00 0.00 33.13 4.52
815 1771 1.475682 CCCAGCTTCTTCCAGAATTGC 59.524 52.381 0.00 0.00 33.13 3.56
816 1772 1.475682 GCCCAGCTTCTTCCAGAATTG 59.524 52.381 0.00 0.00 33.13 2.32
817 1773 1.076024 TGCCCAGCTTCTTCCAGAATT 59.924 47.619 0.00 0.00 33.13 2.17
818 1774 0.700564 TGCCCAGCTTCTTCCAGAAT 59.299 50.000 0.00 0.00 33.13 2.40
819 1775 0.037303 CTGCCCAGCTTCTTCCAGAA 59.963 55.000 0.00 0.00 32.50 3.02
820 1776 1.681666 CTGCCCAGCTTCTTCCAGA 59.318 57.895 0.00 0.00 0.00 3.86
821 1777 1.378250 CCTGCCCAGCTTCTTCCAG 60.378 63.158 0.00 0.00 0.00 3.86
822 1778 2.759114 CCTGCCCAGCTTCTTCCA 59.241 61.111 0.00 0.00 0.00 3.53
823 1779 2.044551 CCCTGCCCAGCTTCTTCC 60.045 66.667 0.00 0.00 0.00 3.46
824 1780 2.044551 CCCCTGCCCAGCTTCTTC 60.045 66.667 0.00 0.00 0.00 2.87
825 1781 3.665971 CCCCCTGCCCAGCTTCTT 61.666 66.667 0.00 0.00 0.00 2.52
827 1783 4.432741 GACCCCCTGCCCAGCTTC 62.433 72.222 0.00 0.00 0.00 3.86
830 1786 3.607084 AATTGACCCCCTGCCCAGC 62.607 63.158 0.00 0.00 0.00 4.85
831 1787 1.380380 GAATTGACCCCCTGCCCAG 60.380 63.158 0.00 0.00 0.00 4.45
832 1788 1.856873 AGAATTGACCCCCTGCCCA 60.857 57.895 0.00 0.00 0.00 5.36
833 1789 1.076705 GAGAATTGACCCCCTGCCC 60.077 63.158 0.00 0.00 0.00 5.36
834 1790 1.452108 CGAGAATTGACCCCCTGCC 60.452 63.158 0.00 0.00 0.00 4.85
835 1791 1.452108 CCGAGAATTGACCCCCTGC 60.452 63.158 0.00 0.00 0.00 4.85
836 1792 0.179000 CTCCGAGAATTGACCCCCTG 59.821 60.000 0.00 0.00 0.00 4.45
837 1793 0.042731 TCTCCGAGAATTGACCCCCT 59.957 55.000 0.00 0.00 0.00 4.79
838 1794 0.909623 TTCTCCGAGAATTGACCCCC 59.090 55.000 6.75 0.00 0.00 5.40
846 1802 2.806945 TTGGGCAATTCTCCGAGAAT 57.193 45.000 16.56 16.56 46.22 2.40
847 1803 2.577606 TTTGGGCAATTCTCCGAGAA 57.422 45.000 13.22 13.22 38.78 2.87
848 1804 2.039746 TCTTTTGGGCAATTCTCCGAGA 59.960 45.455 0.00 0.00 0.00 4.04
849 1805 2.436417 TCTTTTGGGCAATTCTCCGAG 58.564 47.619 0.00 0.00 0.00 4.63
850 1806 2.556622 GTTCTTTTGGGCAATTCTCCGA 59.443 45.455 0.00 0.00 0.00 4.55
851 1807 2.558359 AGTTCTTTTGGGCAATTCTCCG 59.442 45.455 0.00 0.00 0.00 4.63
852 1808 3.306294 CCAGTTCTTTTGGGCAATTCTCC 60.306 47.826 0.00 0.00 31.87 3.71
853 1809 3.862264 GCCAGTTCTTTTGGGCAATTCTC 60.862 47.826 0.00 0.00 45.70 2.87
854 1810 2.037641 GCCAGTTCTTTTGGGCAATTCT 59.962 45.455 0.00 0.00 45.70 2.40
855 1811 2.416747 GCCAGTTCTTTTGGGCAATTC 58.583 47.619 0.00 0.00 45.70 2.17
856 1812 2.549064 GCCAGTTCTTTTGGGCAATT 57.451 45.000 0.00 0.00 45.70 2.32
861 1817 1.913262 GGGGGCCAGTTCTTTTGGG 60.913 63.158 4.39 0.00 36.19 4.12
862 1818 2.275380 CGGGGGCCAGTTCTTTTGG 61.275 63.158 4.39 0.00 38.78 3.28
863 1819 2.275380 CCGGGGGCCAGTTCTTTTG 61.275 63.158 4.39 0.00 0.00 2.44
864 1820 2.117423 CCGGGGGCCAGTTCTTTT 59.883 61.111 4.39 0.00 0.00 2.27
865 1821 3.182996 ACCGGGGGCCAGTTCTTT 61.183 61.111 6.32 0.00 0.00 2.52
866 1822 3.647771 GACCGGGGGCCAGTTCTT 61.648 66.667 6.32 0.00 0.00 2.52
879 1835 1.931172 CTATACTTTGCAACCGGACCG 59.069 52.381 9.46 6.99 0.00 4.79
880 1836 2.981898 ACTATACTTTGCAACCGGACC 58.018 47.619 9.46 0.00 0.00 4.46
881 1837 5.640783 AGTTTACTATACTTTGCAACCGGAC 59.359 40.000 9.46 0.00 0.00 4.79
888 1844 5.808540 CGTGGCTAGTTTACTATACTTTGCA 59.191 40.000 0.00 0.00 0.00 4.08
925 1885 1.202651 GGCGAGGGAAGCAAAGCTATA 60.203 52.381 0.00 0.00 38.25 1.31
928 1888 2.360475 GGCGAGGGAAGCAAAGCT 60.360 61.111 0.00 0.00 42.56 3.74
933 1894 1.302511 GAACTTGGCGAGGGAAGCA 60.303 57.895 6.71 0.00 36.08 3.91
946 1911 3.423907 CGCTGGCGTATAAAAACGAACTT 60.424 43.478 6.83 0.00 45.68 2.66
1092 2070 2.027625 CTTCTTGTCCCACGCGTCC 61.028 63.158 9.86 0.00 0.00 4.79
1476 2475 4.316823 AGCTGGTCCCCGTCCTCA 62.317 66.667 0.00 0.00 0.00 3.86
1995 2994 0.032017 ACGGCACCCTAGAGGAGAAT 60.032 55.000 0.00 0.00 39.89 2.40
2106 3105 1.864862 GTCCGACGTCTTCTCACGA 59.135 57.895 14.70 0.00 42.69 4.35
2144 3146 2.594592 GCACGCTCCCCTTGTTGT 60.595 61.111 0.00 0.00 0.00 3.32
2366 3384 0.739462 TCAATCCTCGTCGCGCATTT 60.739 50.000 8.75 0.00 0.00 2.32
2620 3656 4.981674 TCATTCAACGGCAATGAAAAACTC 59.018 37.500 6.11 0.00 39.98 3.01
2680 3720 2.450476 GCCACACTGGGATCTTTGAAT 58.550 47.619 0.00 0.00 38.19 2.57
2693 3733 2.129555 ATCTGAAAGCCCGCCACACT 62.130 55.000 0.00 0.00 0.00 3.55
2700 3740 4.054671 GTCTGATCTAATCTGAAAGCCCG 58.945 47.826 0.00 0.00 38.67 6.13
2796 3836 4.314961 CGGTCATACATGCTGCCTTAATA 58.685 43.478 0.00 0.00 0.00 0.98
2797 3837 3.141398 CGGTCATACATGCTGCCTTAAT 58.859 45.455 0.00 0.00 0.00 1.40
2798 3838 2.560504 CGGTCATACATGCTGCCTTAA 58.439 47.619 0.00 0.00 0.00 1.85
2799 3839 1.810031 GCGGTCATACATGCTGCCTTA 60.810 52.381 0.00 0.00 33.25 2.69
2807 3847 2.416372 GAAGCGCGCGGTCATACATG 62.416 60.000 36.00 0.18 0.00 3.21
2811 3851 3.439513 ATGGAAGCGCGCGGTCATA 62.440 57.895 36.00 23.01 0.00 2.15
2819 3859 1.067199 GCAGAAAACATGGAAGCGCG 61.067 55.000 0.00 0.00 0.00 6.86
2874 3914 4.406003 GGCTAGGATTCTAGGTTCTTCACA 59.594 45.833 10.19 0.00 42.41 3.58
2875 3915 4.500035 CGGCTAGGATTCTAGGTTCTTCAC 60.500 50.000 10.19 0.00 42.41 3.18
2886 3926 0.885196 GAGATCGCGGCTAGGATTCT 59.115 55.000 6.13 0.00 0.00 2.40
2896 3936 2.861462 AAGAGAGAAAGAGATCGCGG 57.139 50.000 6.13 0.00 0.00 6.46
2904 3944 8.595362 AAAAGGGAAAGAAAAAGAGAGAAAGA 57.405 30.769 0.00 0.00 0.00 2.52
2905 3945 7.923344 GGAAAAGGGAAAGAAAAAGAGAGAAAG 59.077 37.037 0.00 0.00 0.00 2.62
2920 3960 4.095946 CAGGAATCATGGGAAAAGGGAAA 58.904 43.478 0.00 0.00 0.00 3.13
2923 3963 3.105959 ACAGGAATCATGGGAAAAGGG 57.894 47.619 0.00 0.00 0.00 3.95
2930 3970 5.102953 TCAACTAGAACAGGAATCATGGG 57.897 43.478 0.00 0.00 0.00 4.00
2946 3986 8.405418 ACTAGATAGATATTGGCGTTCAACTA 57.595 34.615 0.00 0.00 38.31 2.24
2953 3993 8.460428 GCTTAGTAACTAGATAGATATTGGCGT 58.540 37.037 0.00 0.00 0.00 5.68
2954 3994 8.679100 AGCTTAGTAACTAGATAGATATTGGCG 58.321 37.037 0.00 0.00 0.00 5.69
2968 4008 9.832445 CAGAAAATTATGGGAGCTTAGTAACTA 57.168 33.333 0.00 0.00 0.00 2.24
2969 4009 7.775561 CCAGAAAATTATGGGAGCTTAGTAACT 59.224 37.037 0.00 0.00 35.94 2.24
2970 4010 7.468768 GCCAGAAAATTATGGGAGCTTAGTAAC 60.469 40.741 8.74 0.00 39.88 2.50
2971 4011 6.546034 GCCAGAAAATTATGGGAGCTTAGTAA 59.454 38.462 8.74 0.00 39.88 2.24
2972 4012 6.062095 GCCAGAAAATTATGGGAGCTTAGTA 58.938 40.000 8.74 0.00 39.88 1.82
2973 4013 4.889995 GCCAGAAAATTATGGGAGCTTAGT 59.110 41.667 8.74 0.00 39.88 2.24
2974 4014 4.279420 GGCCAGAAAATTATGGGAGCTTAG 59.721 45.833 8.74 0.00 39.88 2.18
2975 4015 4.079212 AGGCCAGAAAATTATGGGAGCTTA 60.079 41.667 5.01 0.00 39.88 3.09
2976 4016 3.033909 GGCCAGAAAATTATGGGAGCTT 58.966 45.455 8.74 0.00 39.88 3.74
2977 4017 2.245806 AGGCCAGAAAATTATGGGAGCT 59.754 45.455 5.01 0.00 39.88 4.09
2978 4018 2.363359 CAGGCCAGAAAATTATGGGAGC 59.637 50.000 5.01 0.00 39.88 4.70
2979 4019 3.382546 CACAGGCCAGAAAATTATGGGAG 59.617 47.826 5.01 0.00 39.88 4.30
2980 4020 3.364549 CACAGGCCAGAAAATTATGGGA 58.635 45.455 5.01 0.00 39.88 4.37
2981 4021 2.431782 CCACAGGCCAGAAAATTATGGG 59.568 50.000 5.01 0.00 39.88 4.00
2982 4022 3.099141 ACCACAGGCCAGAAAATTATGG 58.901 45.455 5.01 0.69 42.35 2.74
2983 4023 3.119029 CCACCACAGGCCAGAAAATTATG 60.119 47.826 5.01 0.00 0.00 1.90
2984 4024 3.099141 CCACCACAGGCCAGAAAATTAT 58.901 45.455 5.01 0.00 0.00 1.28
2985 4025 2.524306 CCACCACAGGCCAGAAAATTA 58.476 47.619 5.01 0.00 0.00 1.40
2986 4026 1.341080 CCACCACAGGCCAGAAAATT 58.659 50.000 5.01 0.00 0.00 1.82
2987 4027 3.056213 CCACCACAGGCCAGAAAAT 57.944 52.632 5.01 0.00 0.00 1.82
2988 4028 4.597032 CCACCACAGGCCAGAAAA 57.403 55.556 5.01 0.00 0.00 2.29
3010 4050 4.280019 AAACGCCCTCCACACCCC 62.280 66.667 0.00 0.00 0.00 4.95
3011 4051 1.833787 TAGAAACGCCCTCCACACCC 61.834 60.000 0.00 0.00 0.00 4.61
3012 4052 0.252197 ATAGAAACGCCCTCCACACC 59.748 55.000 0.00 0.00 0.00 4.16
3013 4053 1.369625 CATAGAAACGCCCTCCACAC 58.630 55.000 0.00 0.00 0.00 3.82
3014 4054 0.392461 GCATAGAAACGCCCTCCACA 60.392 55.000 0.00 0.00 0.00 4.17
3015 4055 0.392461 TGCATAGAAACGCCCTCCAC 60.392 55.000 0.00 0.00 0.00 4.02
3016 4056 0.546122 ATGCATAGAAACGCCCTCCA 59.454 50.000 0.00 0.00 0.00 3.86
3017 4057 0.947244 CATGCATAGAAACGCCCTCC 59.053 55.000 0.00 0.00 0.00 4.30
3018 4058 1.668419 ACATGCATAGAAACGCCCTC 58.332 50.000 0.00 0.00 0.00 4.30
3019 4059 2.128771 AACATGCATAGAAACGCCCT 57.871 45.000 0.00 0.00 0.00 5.19
3020 4060 2.529151 CAAACATGCATAGAAACGCCC 58.471 47.619 0.00 0.00 0.00 6.13
3021 4061 1.919918 GCAAACATGCATAGAAACGCC 59.080 47.619 0.00 0.00 34.41 5.68
3022 4062 1.578915 CGCAAACATGCATAGAAACGC 59.421 47.619 0.00 0.00 34.41 4.84
3023 4063 3.093574 CTCGCAAACATGCATAGAAACG 58.906 45.455 0.00 1.28 34.41 3.60
3024 4064 3.848019 CACTCGCAAACATGCATAGAAAC 59.152 43.478 0.00 0.00 34.41 2.78
3025 4065 3.501828 ACACTCGCAAACATGCATAGAAA 59.498 39.130 0.00 0.00 34.41 2.52
3026 4066 3.073678 ACACTCGCAAACATGCATAGAA 58.926 40.909 0.00 0.00 34.41 2.10
3027 4067 2.416202 CACACTCGCAAACATGCATAGA 59.584 45.455 0.00 0.00 34.41 1.98
3028 4068 2.160219 ACACACTCGCAAACATGCATAG 59.840 45.455 0.00 0.00 34.41 2.23
3029 4069 2.150390 ACACACTCGCAAACATGCATA 58.850 42.857 0.00 0.00 34.41 3.14
3030 4070 0.953727 ACACACTCGCAAACATGCAT 59.046 45.000 0.00 0.00 34.41 3.96
3031 4071 1.530720 CTACACACTCGCAAACATGCA 59.469 47.619 1.42 0.00 34.41 3.96
3032 4072 1.725931 GCTACACACTCGCAAACATGC 60.726 52.381 0.00 0.00 0.00 4.06
3033 4073 1.530720 TGCTACACACTCGCAAACATG 59.469 47.619 0.00 0.00 0.00 3.21
3034 4074 1.531149 GTGCTACACACTCGCAAACAT 59.469 47.619 0.00 0.00 46.41 2.71
3035 4075 0.934496 GTGCTACACACTCGCAAACA 59.066 50.000 0.00 0.00 46.41 2.83
3036 4076 3.729004 GTGCTACACACTCGCAAAC 57.271 52.632 0.00 0.00 46.41 2.93
3064 4104 2.573083 AAGGGGCGTTGCATGGTTG 61.573 57.895 0.00 0.00 0.00 3.77
3065 4105 2.203625 AAGGGGCGTTGCATGGTT 60.204 55.556 0.00 0.00 0.00 3.67
3066 4106 2.990967 CAAGGGGCGTTGCATGGT 60.991 61.111 0.00 0.00 0.00 3.55
3072 4112 2.033448 TAGTGGCAAGGGGCGTTG 59.967 61.111 0.00 0.00 46.16 4.10
3073 4113 2.033602 GTAGTGGCAAGGGGCGTT 59.966 61.111 0.00 0.00 46.16 4.84
3074 4114 4.388499 CGTAGTGGCAAGGGGCGT 62.388 66.667 0.00 0.00 46.16 5.68
3075 4115 3.894547 AACGTAGTGGCAAGGGGCG 62.895 63.158 0.00 0.00 45.00 6.13
3076 4116 2.033602 AACGTAGTGGCAAGGGGC 59.966 61.111 0.00 0.00 45.00 5.80
3077 4117 0.322322 TACAACGTAGTGGCAAGGGG 59.678 55.000 0.00 0.00 45.00 4.79
3078 4118 2.396590 ATACAACGTAGTGGCAAGGG 57.603 50.000 0.00 0.00 45.00 3.95
3079 4119 4.110482 GACTATACAACGTAGTGGCAAGG 58.890 47.826 0.00 0.00 45.00 3.61
3080 4120 4.740268 TGACTATACAACGTAGTGGCAAG 58.260 43.478 0.00 0.00 45.00 4.01
3081 4121 4.787260 TGACTATACAACGTAGTGGCAA 57.213 40.909 0.00 0.00 45.00 4.52
3082 4122 4.787260 TTGACTATACAACGTAGTGGCA 57.213 40.909 0.00 0.00 45.00 4.92
3083 4123 7.941795 ATTATTGACTATACAACGTAGTGGC 57.058 36.000 0.00 0.00 45.00 5.01
3089 4129 8.823818 GGCTGTTAATTATTGACTATACAACGT 58.176 33.333 1.75 0.00 32.50 3.99
3090 4130 8.002107 CGGCTGTTAATTATTGACTATACAACG 58.998 37.037 1.75 0.00 32.50 4.10
3091 4131 9.037737 TCGGCTGTTAATTATTGACTATACAAC 57.962 33.333 1.75 0.00 32.50 3.32
3092 4132 9.602568 TTCGGCTGTTAATTATTGACTATACAA 57.397 29.630 1.75 0.00 0.00 2.41
3093 4133 9.772973 ATTCGGCTGTTAATTATTGACTATACA 57.227 29.630 1.75 0.00 0.00 2.29
3096 4136 9.337396 TCAATTCGGCTGTTAATTATTGACTAT 57.663 29.630 1.75 0.00 0.00 2.12
3097 4137 8.725405 TCAATTCGGCTGTTAATTATTGACTA 57.275 30.769 1.75 0.00 0.00 2.59
3098 4138 7.624360 TCAATTCGGCTGTTAATTATTGACT 57.376 32.000 1.75 0.00 0.00 3.41
3099 4139 8.682128 TTTCAATTCGGCTGTTAATTATTGAC 57.318 30.769 0.00 0.00 32.21 3.18
3100 4140 9.515020 GATTTCAATTCGGCTGTTAATTATTGA 57.485 29.630 0.00 0.00 0.00 2.57
3101 4141 9.299963 TGATTTCAATTCGGCTGTTAATTATTG 57.700 29.630 0.00 0.00 0.00 1.90
3102 4142 9.868277 TTGATTTCAATTCGGCTGTTAATTATT 57.132 25.926 0.00 0.00 0.00 1.40
3103 4143 9.868277 TTTGATTTCAATTCGGCTGTTAATTAT 57.132 25.926 0.00 0.00 35.55 1.28
3104 4144 9.698309 TTTTGATTTCAATTCGGCTGTTAATTA 57.302 25.926 0.00 0.00 35.55 1.40
3105 4145 8.600449 TTTTGATTTCAATTCGGCTGTTAATT 57.400 26.923 0.00 0.00 35.55 1.40
3106 4146 7.331687 CCTTTTGATTTCAATTCGGCTGTTAAT 59.668 33.333 0.00 0.00 35.55 1.40
3107 4147 6.644592 CCTTTTGATTTCAATTCGGCTGTTAA 59.355 34.615 0.00 0.00 35.55 2.01
3108 4148 6.015856 TCCTTTTGATTTCAATTCGGCTGTTA 60.016 34.615 0.00 0.00 35.55 2.41
3109 4149 4.990426 CCTTTTGATTTCAATTCGGCTGTT 59.010 37.500 0.00 0.00 35.55 3.16
3110 4150 4.280677 TCCTTTTGATTTCAATTCGGCTGT 59.719 37.500 0.00 0.00 35.55 4.40
3111 4151 4.808558 TCCTTTTGATTTCAATTCGGCTG 58.191 39.130 0.00 0.00 35.55 4.85
3112 4152 4.766891 TCTCCTTTTGATTTCAATTCGGCT 59.233 37.500 0.00 0.00 35.55 5.52
3113 4153 5.059404 TCTCCTTTTGATTTCAATTCGGC 57.941 39.130 0.00 0.00 35.55 5.54
3114 4154 6.500684 TCTCTCCTTTTGATTTCAATTCGG 57.499 37.500 0.00 0.00 35.55 4.30
3115 4155 6.026513 GCTCTCTCCTTTTGATTTCAATTCG 58.973 40.000 0.00 0.00 35.55 3.34
3116 4156 6.328714 GGCTCTCTCCTTTTGATTTCAATTC 58.671 40.000 0.00 0.00 35.55 2.17
3117 4157 5.105997 CGGCTCTCTCCTTTTGATTTCAATT 60.106 40.000 0.00 0.00 35.55 2.32
3118 4158 4.397417 CGGCTCTCTCCTTTTGATTTCAAT 59.603 41.667 0.00 0.00 35.55 2.57
3119 4159 3.753272 CGGCTCTCTCCTTTTGATTTCAA 59.247 43.478 0.00 0.00 0.00 2.69
3120 4160 3.338249 CGGCTCTCTCCTTTTGATTTCA 58.662 45.455 0.00 0.00 0.00 2.69
3121 4161 2.680339 CCGGCTCTCTCCTTTTGATTTC 59.320 50.000 0.00 0.00 0.00 2.17
3122 4162 2.305927 TCCGGCTCTCTCCTTTTGATTT 59.694 45.455 0.00 0.00 0.00 2.17
3123 4163 1.909302 TCCGGCTCTCTCCTTTTGATT 59.091 47.619 0.00 0.00 0.00 2.57
3124 4164 1.484240 CTCCGGCTCTCTCCTTTTGAT 59.516 52.381 0.00 0.00 0.00 2.57
3125 4165 0.898320 CTCCGGCTCTCTCCTTTTGA 59.102 55.000 0.00 0.00 0.00 2.69
3126 4166 0.742635 GCTCCGGCTCTCTCCTTTTG 60.743 60.000 0.00 0.00 35.22 2.44
3127 4167 1.599576 GCTCCGGCTCTCTCCTTTT 59.400 57.895 0.00 0.00 35.22 2.27
3128 4168 2.716017 CGCTCCGGCTCTCTCCTTT 61.716 63.158 0.00 0.00 36.09 3.11
3129 4169 3.144193 CGCTCCGGCTCTCTCCTT 61.144 66.667 0.00 0.00 36.09 3.36
3132 4172 4.863925 GTGCGCTCCGGCTCTCTC 62.864 72.222 9.73 0.00 36.09 3.20
3134 4174 4.521062 ATGTGCGCTCCGGCTCTC 62.521 66.667 9.73 0.00 36.09 3.20
3135 4175 4.827087 CATGTGCGCTCCGGCTCT 62.827 66.667 9.73 0.00 36.09 4.09
3187 4227 4.933064 GAGATCAGGACGGCGGCG 62.933 72.222 31.06 31.06 0.00 6.46
3188 4228 3.492311 GAGAGATCAGGACGGCGGC 62.492 68.421 13.24 8.60 0.00 6.53
3189 4229 1.388065 AAGAGAGATCAGGACGGCGG 61.388 60.000 13.24 0.00 0.00 6.13
3190 4230 0.030101 GAAGAGAGATCAGGACGGCG 59.970 60.000 4.80 4.80 0.00 6.46
3191 4231 1.398692 AGAAGAGAGATCAGGACGGC 58.601 55.000 0.00 0.00 0.00 5.68
3192 4232 2.032799 CGAAGAAGAGAGATCAGGACGG 59.967 54.545 0.00 0.00 0.00 4.79
3193 4233 2.032799 CCGAAGAAGAGAGATCAGGACG 59.967 54.545 0.00 0.00 0.00 4.79
3194 4234 2.223711 GCCGAAGAAGAGAGATCAGGAC 60.224 54.545 0.00 0.00 0.00 3.85
3195 4235 2.028130 GCCGAAGAAGAGAGATCAGGA 58.972 52.381 0.00 0.00 0.00 3.86
3196 4236 1.068434 GGCCGAAGAAGAGAGATCAGG 59.932 57.143 0.00 0.00 0.00 3.86
3197 4237 2.031120 AGGCCGAAGAAGAGAGATCAG 58.969 52.381 0.00 0.00 0.00 2.90
3198 4238 2.028130 GAGGCCGAAGAAGAGAGATCA 58.972 52.381 0.00 0.00 0.00 2.92
3199 4239 1.339929 GGAGGCCGAAGAAGAGAGATC 59.660 57.143 0.00 0.00 0.00 2.75
3200 4240 1.408969 GGAGGCCGAAGAAGAGAGAT 58.591 55.000 0.00 0.00 0.00 2.75
3201 4241 0.684805 GGGAGGCCGAAGAAGAGAGA 60.685 60.000 0.00 0.00 0.00 3.10
3202 4242 1.681486 GGGGAGGCCGAAGAAGAGAG 61.681 65.000 0.00 0.00 0.00 3.20
3203 4243 1.686110 GGGGAGGCCGAAGAAGAGA 60.686 63.158 0.00 0.00 0.00 3.10
3204 4244 1.687493 AGGGGAGGCCGAAGAAGAG 60.687 63.158 0.00 0.00 0.00 2.85
3205 4245 1.990060 CAGGGGAGGCCGAAGAAGA 60.990 63.158 0.00 0.00 0.00 2.87
3206 4246 2.586792 CAGGGGAGGCCGAAGAAG 59.413 66.667 0.00 0.00 0.00 2.85
3207 4247 3.717294 GCAGGGGAGGCCGAAGAA 61.717 66.667 0.00 0.00 0.00 2.52
3209 4249 4.785453 GTGCAGGGGAGGCCGAAG 62.785 72.222 0.00 0.00 0.00 3.79
3227 4267 4.227134 CGGATCTGGACCGGGCAG 62.227 72.222 11.00 4.78 45.65 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.