Multiple sequence alignment - TraesCS7B01G081500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G081500 chr7B 100.000 6091 0 0 1 6091 92035719 92041809 0.000000e+00 11249.0
1 TraesCS7B01G081500 chr7B 91.738 351 28 1 64 413 12394477 12394827 2.550000e-133 486.0
2 TraesCS7B01G081500 chr7B 100.000 29 0 0 4833 4861 92040490 92040518 3.000000e-03 54.7
3 TraesCS7B01G081500 chr7B 100.000 29 0 0 4772 4800 92040551 92040579 3.000000e-03 54.7
4 TraesCS7B01G081500 chr7D 89.420 3998 261 76 413 4332 131094535 131098448 0.000000e+00 4891.0
5 TraesCS7B01G081500 chr7D 99.213 635 5 0 5456 6090 131099874 131100508 0.000000e+00 1146.0
6 TraesCS7B01G081500 chr7D 95.315 555 12 5 4903 5454 131099295 131099838 0.000000e+00 869.0
7 TraesCS7B01G081500 chr7D 81.301 492 30 20 4427 4903 131098799 131099243 5.850000e-90 342.0
8 TraesCS7B01G081500 chr7D 100.000 29 0 0 4772 4800 131099173 131099201 3.000000e-03 54.7
9 TraesCS7B01G081500 chr7A 92.950 2454 123 27 1950 4367 129865486 129867925 0.000000e+00 3528.0
10 TraesCS7B01G081500 chr7A 91.240 1153 56 17 657 1769 129864070 129865217 0.000000e+00 1528.0
11 TraesCS7B01G081500 chr7A 91.994 637 48 2 5456 6090 129871648 129872283 0.000000e+00 891.0
12 TraesCS7B01G081500 chr7A 82.046 479 52 9 4914 5369 129871048 129871515 1.600000e-100 377.0
13 TraesCS7B01G081500 chr7A 94.578 166 9 0 1786 1951 129865206 129865371 2.180000e-64 257.0
14 TraesCS7B01G081500 chr5B 91.243 354 29 2 64 416 141998039 141997687 1.190000e-131 481.0
15 TraesCS7B01G081500 chr5B 82.918 281 34 13 1 276 591099543 591099814 2.190000e-59 241.0
16 TraesCS7B01G081500 chr6B 89.415 359 26 7 64 413 684282488 684282843 5.600000e-120 442.0
17 TraesCS7B01G081500 chr6B 88.858 359 28 7 64 413 684275742 684276097 1.210000e-116 431.0
18 TraesCS7B01G081500 chr5D 90.506 316 27 2 64 378 108506712 108506399 1.220000e-111 414.0
19 TraesCS7B01G081500 chr4D 88.959 317 26 4 64 378 100347068 100346759 3.440000e-102 383.0
20 TraesCS7B01G081500 chr3D 86.158 354 41 8 65 413 548522245 548521895 5.760000e-100 375.0
21 TraesCS7B01G081500 chr3B 83.754 357 48 9 64 413 762786841 762787194 4.550000e-86 329.0
22 TraesCS7B01G081500 chr4B 90.286 175 15 2 255 427 36009299 36009473 1.710000e-55 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G081500 chr7B 92035719 92041809 6090 False 3786.133333 11249 100.0000 1 6091 3 chr7B.!!$F2 6090
1 TraesCS7B01G081500 chr7D 131094535 131100508 5973 False 1460.540000 4891 93.0498 413 6090 5 chr7D.!!$F1 5677
2 TraesCS7B01G081500 chr7A 129864070 129872283 8213 False 1316.200000 3528 90.5616 657 6090 5 chr7A.!!$F1 5433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 466 0.032813 ATGGCCAAGACATCCCAAGG 60.033 55.000 10.96 0.0 0.00 3.61 F
470 471 0.329261 CAAGACATCCCAAGGCAGGA 59.671 55.000 0.00 0.0 37.93 3.86 F
1774 1833 0.881159 TTAACTCACCAACGTGCCCG 60.881 55.000 0.00 0.0 40.04 6.13 F
1782 1841 2.123812 AACGTGCCCGGGGAAAAA 60.124 55.556 25.28 0.0 38.78 1.94 F
3425 3646 0.521291 TGCGCAACTTGGCATTACTC 59.479 50.000 8.16 0.0 33.52 2.59 F
4871 7887 0.040058 TGGCCGTAACTACCTGAGGA 59.960 55.000 4.99 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 1853 0.251653 TAGGTCTTCCTGAGCCACGT 60.252 55.000 0.00 0.00 44.81 4.49 R
1795 1854 0.457851 CTAGGTCTTCCTGAGCCACG 59.542 60.000 0.00 0.00 44.81 4.94 R
2629 2848 0.034059 AGGTGACACGGCTCTGAAAG 59.966 55.000 0.00 0.00 0.00 2.62 R
3463 3684 0.881796 CCGAAGTTGCCTTTTCTCCC 59.118 55.000 0.00 0.00 0.00 4.30 R
4884 7900 0.770499 TCTTGGATGCAAGTGGGTCA 59.230 50.000 24.15 3.41 34.07 4.02 R
5768 8923 3.732721 GTGTGCAAGCAAAGTTTCATCTC 59.267 43.478 0.00 0.00 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.717294 GGGGGAGGAAGCAGCGAA 61.717 66.667 0.00 0.00 0.00 4.70
24 25 2.592308 GGGGAGGAAGCAGCGAAT 59.408 61.111 0.00 0.00 0.00 3.34
25 26 1.524849 GGGGAGGAAGCAGCGAATC 60.525 63.158 0.00 0.00 0.00 2.52
26 27 1.884926 GGGAGGAAGCAGCGAATCG 60.885 63.158 0.00 0.00 0.00 3.34
37 38 4.524305 CGAATCGCAAAACGGCAA 57.476 50.000 0.00 0.00 43.89 4.52
38 39 2.339047 CGAATCGCAAAACGGCAAG 58.661 52.632 0.00 0.00 43.89 4.01
39 40 0.385473 CGAATCGCAAAACGGCAAGT 60.385 50.000 0.00 0.00 43.89 3.16
40 41 1.052287 GAATCGCAAAACGGCAAGTG 58.948 50.000 0.00 0.00 43.89 3.16
41 42 0.383949 AATCGCAAAACGGCAAGTGT 59.616 45.000 0.00 0.00 43.89 3.55
42 43 0.383949 ATCGCAAAACGGCAAGTGTT 59.616 45.000 0.00 0.00 43.89 3.32
47 48 1.470051 AAAACGGCAAGTGTTGACCT 58.530 45.000 0.00 0.00 34.26 3.85
48 49 2.335316 AAACGGCAAGTGTTGACCTA 57.665 45.000 0.00 0.00 34.26 3.08
49 50 1.878953 AACGGCAAGTGTTGACCTAG 58.121 50.000 0.00 0.00 34.26 3.02
50 51 1.045407 ACGGCAAGTGTTGACCTAGA 58.955 50.000 0.00 0.00 34.26 2.43
51 52 1.270147 ACGGCAAGTGTTGACCTAGAC 60.270 52.381 0.00 0.00 34.26 2.59
52 53 1.429463 GGCAAGTGTTGACCTAGACG 58.571 55.000 0.00 0.00 30.38 4.18
53 54 0.790814 GCAAGTGTTGACCTAGACGC 59.209 55.000 0.00 0.00 0.00 5.19
54 55 1.060713 CAAGTGTTGACCTAGACGCG 58.939 55.000 3.53 3.53 0.00 6.01
55 56 0.956633 AAGTGTTGACCTAGACGCGA 59.043 50.000 15.93 0.00 0.00 5.87
56 57 0.956633 AGTGTTGACCTAGACGCGAA 59.043 50.000 15.93 0.00 0.00 4.70
57 58 1.338973 AGTGTTGACCTAGACGCGAAA 59.661 47.619 15.93 0.00 0.00 3.46
58 59 2.029290 AGTGTTGACCTAGACGCGAAAT 60.029 45.455 15.93 0.00 0.00 2.17
59 60 2.092211 GTGTTGACCTAGACGCGAAATG 59.908 50.000 15.93 0.00 0.00 2.32
60 61 2.029739 TGTTGACCTAGACGCGAAATGA 60.030 45.455 15.93 0.00 0.00 2.57
61 62 2.273370 TGACCTAGACGCGAAATGAC 57.727 50.000 15.93 0.00 0.00 3.06
62 63 1.816835 TGACCTAGACGCGAAATGACT 59.183 47.619 15.93 4.59 0.00 3.41
63 64 3.011818 TGACCTAGACGCGAAATGACTA 58.988 45.455 15.93 5.53 0.00 2.59
64 65 3.441222 TGACCTAGACGCGAAATGACTAA 59.559 43.478 15.93 0.00 0.00 2.24
65 66 4.082625 TGACCTAGACGCGAAATGACTAAA 60.083 41.667 15.93 0.00 0.00 1.85
66 67 4.813027 ACCTAGACGCGAAATGACTAAAA 58.187 39.130 15.93 0.00 0.00 1.52
67 68 5.416947 ACCTAGACGCGAAATGACTAAAAT 58.583 37.500 15.93 0.00 0.00 1.82
68 69 5.291128 ACCTAGACGCGAAATGACTAAAATG 59.709 40.000 15.93 0.00 0.00 2.32
69 70 4.003519 AGACGCGAAATGACTAAAATGC 57.996 40.909 15.93 0.00 0.00 3.56
70 71 3.098636 GACGCGAAATGACTAAAATGCC 58.901 45.455 15.93 0.00 0.00 4.40
71 72 2.159435 ACGCGAAATGACTAAAATGCCC 60.159 45.455 15.93 0.00 0.00 5.36
72 73 2.097466 CGCGAAATGACTAAAATGCCCT 59.903 45.455 0.00 0.00 0.00 5.19
73 74 3.695816 GCGAAATGACTAAAATGCCCTC 58.304 45.455 0.00 0.00 0.00 4.30
74 75 3.788797 GCGAAATGACTAAAATGCCCTCG 60.789 47.826 0.00 0.00 0.00 4.63
75 76 3.242739 CGAAATGACTAAAATGCCCTCGG 60.243 47.826 0.00 0.00 0.00 4.63
91 92 4.435970 GGCGGGGGACGGGAATTT 62.436 66.667 0.00 0.00 44.51 1.82
92 93 2.827190 GCGGGGGACGGGAATTTC 60.827 66.667 0.00 0.00 44.51 2.17
93 94 2.512974 CGGGGGACGGGAATTTCG 60.513 66.667 0.00 1.43 39.42 3.46
94 95 2.124445 GGGGGACGGGAATTTCGG 60.124 66.667 6.99 0.00 0.00 4.30
95 96 2.827190 GGGGACGGGAATTTCGGC 60.827 66.667 6.99 3.76 34.40 5.54
96 97 3.199891 GGGACGGGAATTTCGGCG 61.200 66.667 0.00 0.00 36.33 6.46
97 98 3.199891 GGACGGGAATTTCGGCGG 61.200 66.667 7.21 0.00 36.33 6.13
98 99 2.435410 GACGGGAATTTCGGCGGT 60.435 61.111 7.21 0.00 0.00 5.68
99 100 2.744709 ACGGGAATTTCGGCGGTG 60.745 61.111 7.21 0.00 0.00 4.94
100 101 3.505184 CGGGAATTTCGGCGGTGG 61.505 66.667 7.21 0.00 0.00 4.61
101 102 3.822192 GGGAATTTCGGCGGTGGC 61.822 66.667 7.21 0.00 38.90 5.01
102 103 3.059386 GGAATTTCGGCGGTGGCA 61.059 61.111 7.21 0.00 42.47 4.92
103 104 2.414785 GGAATTTCGGCGGTGGCAT 61.415 57.895 7.21 0.00 42.47 4.40
104 105 1.226660 GAATTTCGGCGGTGGCATG 60.227 57.895 7.21 0.00 42.47 4.06
105 106 1.653094 GAATTTCGGCGGTGGCATGA 61.653 55.000 7.21 0.00 42.47 3.07
106 107 1.656818 AATTTCGGCGGTGGCATGAG 61.657 55.000 7.21 0.00 42.47 2.90
107 108 2.535485 ATTTCGGCGGTGGCATGAGA 62.535 55.000 7.21 0.00 42.47 3.27
108 109 2.535485 TTTCGGCGGTGGCATGAGAT 62.535 55.000 7.21 0.00 42.47 2.75
109 110 2.923426 TTCGGCGGTGGCATGAGATC 62.923 60.000 7.21 0.00 42.47 2.75
110 111 2.507944 GGCGGTGGCATGAGATCT 59.492 61.111 0.00 0.00 42.47 2.75
111 112 1.153086 GGCGGTGGCATGAGATCTT 60.153 57.895 0.00 0.00 42.47 2.40
112 113 0.749454 GGCGGTGGCATGAGATCTTT 60.749 55.000 0.00 0.00 42.47 2.52
113 114 1.098050 GCGGTGGCATGAGATCTTTT 58.902 50.000 0.00 0.00 39.62 2.27
114 115 2.288666 GCGGTGGCATGAGATCTTTTA 58.711 47.619 0.00 0.00 39.62 1.52
115 116 2.032178 GCGGTGGCATGAGATCTTTTAC 59.968 50.000 0.00 0.00 39.62 2.01
116 117 2.614057 CGGTGGCATGAGATCTTTTACC 59.386 50.000 0.00 0.00 0.00 2.85
117 118 2.614057 GGTGGCATGAGATCTTTTACCG 59.386 50.000 0.00 0.00 0.00 4.02
118 119 3.270877 GTGGCATGAGATCTTTTACCGT 58.729 45.455 0.00 0.00 0.00 4.83
119 120 3.689649 GTGGCATGAGATCTTTTACCGTT 59.310 43.478 0.00 0.00 0.00 4.44
120 121 3.689161 TGGCATGAGATCTTTTACCGTTG 59.311 43.478 0.00 0.00 0.00 4.10
121 122 3.065371 GGCATGAGATCTTTTACCGTTGG 59.935 47.826 0.00 0.00 0.00 3.77
122 123 3.938963 GCATGAGATCTTTTACCGTTGGA 59.061 43.478 0.00 0.00 0.00 3.53
123 124 4.201822 GCATGAGATCTTTTACCGTTGGAC 60.202 45.833 0.00 0.00 0.00 4.02
124 125 3.934068 TGAGATCTTTTACCGTTGGACC 58.066 45.455 0.00 0.00 0.00 4.46
125 126 2.928116 GAGATCTTTTACCGTTGGACCG 59.072 50.000 0.00 0.00 0.00 4.79
126 127 1.395954 GATCTTTTACCGTTGGACCGC 59.604 52.381 0.00 0.00 0.00 5.68
127 128 0.945265 TCTTTTACCGTTGGACCGCG 60.945 55.000 0.00 0.00 0.00 6.46
128 129 2.503034 CTTTTACCGTTGGACCGCGC 62.503 60.000 0.00 0.00 0.00 6.86
166 167 3.004946 GCCCCAGCCCAAGCAAAT 61.005 61.111 0.00 0.00 43.56 2.32
167 168 2.983791 CCCCAGCCCAAGCAAATG 59.016 61.111 0.00 0.00 43.56 2.32
168 169 1.610086 CCCCAGCCCAAGCAAATGA 60.610 57.895 0.00 0.00 43.56 2.57
169 170 1.593265 CCCAGCCCAAGCAAATGAC 59.407 57.895 0.00 0.00 43.56 3.06
170 171 1.186917 CCCAGCCCAAGCAAATGACA 61.187 55.000 0.00 0.00 43.56 3.58
171 172 0.899720 CCAGCCCAAGCAAATGACAT 59.100 50.000 0.00 0.00 43.56 3.06
172 173 1.404986 CCAGCCCAAGCAAATGACATG 60.405 52.381 0.00 0.00 43.56 3.21
173 174 0.248289 AGCCCAAGCAAATGACATGC 59.752 50.000 0.00 0.00 43.56 4.06
178 179 2.202783 GCAAATGACATGCGGGCC 60.203 61.111 0.00 0.00 33.57 5.80
179 180 2.495866 CAAATGACATGCGGGCCC 59.504 61.111 13.57 13.57 0.00 5.80
180 181 2.759560 AAATGACATGCGGGCCCC 60.760 61.111 18.66 10.05 0.00 5.80
181 182 3.598747 AAATGACATGCGGGCCCCA 62.599 57.895 18.66 16.22 0.00 4.96
182 183 2.877089 AAATGACATGCGGGCCCCAT 62.877 55.000 18.66 17.90 0.00 4.00
183 184 3.797507 ATGACATGCGGGCCCCATC 62.798 63.158 18.66 11.13 0.00 3.51
184 185 4.195334 GACATGCGGGCCCCATCT 62.195 66.667 18.66 8.51 0.00 2.90
185 186 4.511246 ACATGCGGGCCCCATCTG 62.511 66.667 18.66 13.50 0.00 2.90
191 192 4.066139 GGGCCCCATCTGCTGGTT 62.066 66.667 12.23 0.00 44.30 3.67
192 193 2.689691 GGGCCCCATCTGCTGGTTA 61.690 63.158 12.23 0.00 44.30 2.85
193 194 1.453928 GGCCCCATCTGCTGGTTAC 60.454 63.158 0.00 0.00 44.30 2.50
194 195 1.453928 GCCCCATCTGCTGGTTACC 60.454 63.158 0.00 0.00 44.30 2.85
195 196 1.227383 CCCCATCTGCTGGTTACCC 59.773 63.158 0.00 0.00 44.30 3.69
196 197 1.227383 CCCATCTGCTGGTTACCCC 59.773 63.158 0.00 0.00 44.30 4.95
197 198 1.570857 CCCATCTGCTGGTTACCCCA 61.571 60.000 0.00 0.00 44.30 4.96
198 199 0.394352 CCATCTGCTGGTTACCCCAC 60.394 60.000 0.00 0.00 38.72 4.61
199 200 0.327924 CATCTGCTGGTTACCCCACA 59.672 55.000 0.00 0.00 38.72 4.17
200 201 0.328258 ATCTGCTGGTTACCCCACAC 59.672 55.000 0.00 0.00 38.72 3.82
201 202 1.671054 CTGCTGGTTACCCCACACG 60.671 63.158 0.00 0.00 38.72 4.49
202 203 2.359478 GCTGGTTACCCCACACGG 60.359 66.667 0.00 0.00 38.72 4.94
203 204 2.359478 CTGGTTACCCCACACGGC 60.359 66.667 0.00 0.00 38.72 5.68
204 205 3.169242 TGGTTACCCCACACGGCA 61.169 61.111 0.00 0.00 38.72 5.69
205 206 2.359478 GGTTACCCCACACGGCAG 60.359 66.667 0.00 0.00 0.00 4.85
206 207 3.053896 GTTACCCCACACGGCAGC 61.054 66.667 0.00 0.00 0.00 5.25
207 208 4.690719 TTACCCCACACGGCAGCG 62.691 66.667 0.00 0.00 0.00 5.18
230 231 2.257676 GGAACGAGTCCGCGAAGT 59.742 61.111 8.23 0.00 36.40 3.01
231 232 2.087009 GGAACGAGTCCGCGAAGTG 61.087 63.158 8.23 0.00 36.40 3.16
232 233 1.081641 GAACGAGTCCGCGAAGTGA 60.082 57.895 8.23 0.00 43.07 3.41
233 234 1.066114 GAACGAGTCCGCGAAGTGAG 61.066 60.000 8.23 0.00 43.07 3.51
234 235 1.512996 AACGAGTCCGCGAAGTGAGA 61.513 55.000 8.23 0.00 43.07 3.27
235 236 1.226156 CGAGTCCGCGAAGTGAGAG 60.226 63.158 8.23 0.00 43.07 3.20
236 237 1.636570 CGAGTCCGCGAAGTGAGAGA 61.637 60.000 8.23 0.00 43.07 3.10
237 238 0.098025 GAGTCCGCGAAGTGAGAGAG 59.902 60.000 8.23 0.00 43.07 3.20
238 239 0.321741 AGTCCGCGAAGTGAGAGAGA 60.322 55.000 8.23 0.00 43.07 3.10
239 240 0.179184 GTCCGCGAAGTGAGAGAGAC 60.179 60.000 8.23 0.00 43.07 3.36
240 241 1.137825 CCGCGAAGTGAGAGAGACC 59.862 63.158 8.23 0.00 43.07 3.85
241 242 1.226156 CGCGAAGTGAGAGAGACCG 60.226 63.158 0.00 0.00 43.07 4.79
242 243 1.137825 GCGAAGTGAGAGAGACCGG 59.862 63.158 0.00 0.00 0.00 5.28
243 244 1.803943 CGAAGTGAGAGAGACCGGG 59.196 63.158 6.32 0.00 0.00 5.73
244 245 0.677098 CGAAGTGAGAGAGACCGGGA 60.677 60.000 6.32 0.00 0.00 5.14
245 246 1.099689 GAAGTGAGAGAGACCGGGAG 58.900 60.000 6.32 0.00 0.00 4.30
246 247 0.699399 AAGTGAGAGAGACCGGGAGA 59.301 55.000 6.32 0.00 0.00 3.71
247 248 0.254747 AGTGAGAGAGACCGGGAGAG 59.745 60.000 6.32 0.00 0.00 3.20
248 249 0.750182 GTGAGAGAGACCGGGAGAGG 60.750 65.000 6.32 0.00 37.30 3.69
249 250 1.152839 GAGAGAGACCGGGAGAGGG 60.153 68.421 6.32 0.00 35.02 4.30
250 251 2.835895 GAGAGACCGGGAGAGGGC 60.836 72.222 6.32 0.00 40.48 5.19
251 252 3.663815 GAGAGACCGGGAGAGGGCA 62.664 68.421 6.32 0.00 43.43 5.36
252 253 3.151022 GAGACCGGGAGAGGGCAG 61.151 72.222 6.32 0.00 43.43 4.85
253 254 3.966930 GAGACCGGGAGAGGGCAGT 62.967 68.421 6.32 0.00 43.43 4.40
254 255 2.043248 GACCGGGAGAGGGCAGTA 60.043 66.667 6.32 0.00 39.73 2.74
255 256 1.684734 GACCGGGAGAGGGCAGTAA 60.685 63.158 6.32 0.00 39.73 2.24
256 257 1.957765 GACCGGGAGAGGGCAGTAAC 61.958 65.000 6.32 0.00 39.73 2.50
257 258 1.686110 CCGGGAGAGGGCAGTAACT 60.686 63.158 0.00 0.00 0.00 2.24
258 259 0.396695 CCGGGAGAGGGCAGTAACTA 60.397 60.000 0.00 0.00 0.00 2.24
259 260 1.705873 CGGGAGAGGGCAGTAACTAT 58.294 55.000 0.00 0.00 0.00 2.12
260 261 2.040178 CGGGAGAGGGCAGTAACTATT 58.960 52.381 0.00 0.00 0.00 1.73
261 262 2.036089 CGGGAGAGGGCAGTAACTATTC 59.964 54.545 0.00 0.00 0.00 1.75
262 263 3.039011 GGGAGAGGGCAGTAACTATTCA 58.961 50.000 0.00 0.00 0.00 2.57
263 264 3.648545 GGGAGAGGGCAGTAACTATTCAT 59.351 47.826 0.00 0.00 0.00 2.57
264 265 4.103311 GGGAGAGGGCAGTAACTATTCATT 59.897 45.833 0.00 0.00 0.00 2.57
265 266 5.059833 GGAGAGGGCAGTAACTATTCATTG 58.940 45.833 0.00 0.00 0.00 2.82
266 267 4.455606 AGAGGGCAGTAACTATTCATTGC 58.544 43.478 0.00 0.00 0.00 3.56
267 268 4.164988 AGAGGGCAGTAACTATTCATTGCT 59.835 41.667 0.00 0.00 0.00 3.91
268 269 5.366768 AGAGGGCAGTAACTATTCATTGCTA 59.633 40.000 0.00 0.00 0.00 3.49
269 270 5.368989 AGGGCAGTAACTATTCATTGCTAC 58.631 41.667 0.00 0.00 0.00 3.58
270 271 5.104527 AGGGCAGTAACTATTCATTGCTACA 60.105 40.000 0.00 0.00 0.00 2.74
271 272 5.237344 GGGCAGTAACTATTCATTGCTACAG 59.763 44.000 0.00 0.00 0.00 2.74
272 273 5.237344 GGCAGTAACTATTCATTGCTACAGG 59.763 44.000 0.00 0.00 0.00 4.00
273 274 5.277538 GCAGTAACTATTCATTGCTACAGGC 60.278 44.000 0.00 0.00 42.22 4.85
274 275 5.050490 AGTAACTATTCATTGCTACAGGCG 58.950 41.667 0.00 0.00 45.43 5.52
275 276 2.213499 ACTATTCATTGCTACAGGCGC 58.787 47.619 0.00 0.00 45.43 6.53
276 277 1.193203 CTATTCATTGCTACAGGCGCG 59.807 52.381 0.00 0.00 45.43 6.86
277 278 1.439353 ATTCATTGCTACAGGCGCGG 61.439 55.000 8.83 0.00 45.43 6.46
278 279 3.576356 CATTGCTACAGGCGCGGG 61.576 66.667 8.83 0.00 45.43 6.13
279 280 4.856801 ATTGCTACAGGCGCGGGG 62.857 66.667 8.83 0.00 45.43 5.73
298 299 2.435938 GCGATCCAACGGCCAGAA 60.436 61.111 2.24 0.00 0.00 3.02
299 300 1.819632 GCGATCCAACGGCCAGAAT 60.820 57.895 2.24 0.00 0.00 2.40
300 301 1.376609 GCGATCCAACGGCCAGAATT 61.377 55.000 2.24 0.00 0.00 2.17
301 302 1.094785 CGATCCAACGGCCAGAATTT 58.905 50.000 2.24 0.00 0.00 1.82
302 303 1.472480 CGATCCAACGGCCAGAATTTT 59.528 47.619 2.24 0.00 0.00 1.82
303 304 2.094752 CGATCCAACGGCCAGAATTTTT 60.095 45.455 2.24 0.00 0.00 1.94
304 305 3.511699 GATCCAACGGCCAGAATTTTTC 58.488 45.455 2.24 0.00 0.00 2.29
305 306 2.311463 TCCAACGGCCAGAATTTTTCA 58.689 42.857 2.24 0.00 0.00 2.69
306 307 2.035321 TCCAACGGCCAGAATTTTTCAC 59.965 45.455 2.24 0.00 0.00 3.18
307 308 2.403259 CAACGGCCAGAATTTTTCACC 58.597 47.619 2.24 0.00 0.00 4.02
308 309 0.596082 ACGGCCAGAATTTTTCACCG 59.404 50.000 2.24 12.06 43.80 4.94
309 310 0.732538 CGGCCAGAATTTTTCACCGC 60.733 55.000 2.24 0.00 36.56 5.68
310 311 0.316841 GGCCAGAATTTTTCACCGCA 59.683 50.000 0.00 0.00 0.00 5.69
311 312 1.066929 GGCCAGAATTTTTCACCGCAT 60.067 47.619 0.00 0.00 0.00 4.73
312 313 2.262211 GCCAGAATTTTTCACCGCATC 58.738 47.619 0.00 0.00 0.00 3.91
313 314 2.518949 CCAGAATTTTTCACCGCATCG 58.481 47.619 0.00 0.00 0.00 3.84
314 315 2.161410 CCAGAATTTTTCACCGCATCGA 59.839 45.455 0.00 0.00 0.00 3.59
315 316 3.181497 CCAGAATTTTTCACCGCATCGAT 60.181 43.478 0.00 0.00 0.00 3.59
316 317 4.031028 CAGAATTTTTCACCGCATCGATC 58.969 43.478 0.00 0.00 0.00 3.69
317 318 2.737467 ATTTTTCACCGCATCGATCG 57.263 45.000 9.36 9.36 0.00 3.69
318 319 1.715993 TTTTTCACCGCATCGATCGA 58.284 45.000 21.86 21.86 0.00 3.59
319 320 1.715993 TTTTCACCGCATCGATCGAA 58.284 45.000 23.50 5.77 0.00 3.71
320 321 0.996462 TTTCACCGCATCGATCGAAC 59.004 50.000 23.50 16.08 0.00 3.95
321 322 1.137459 TTCACCGCATCGATCGAACG 61.137 55.000 27.37 27.37 0.00 3.95
322 323 2.278596 ACCGCATCGATCGAACGG 60.279 61.111 39.36 39.36 46.51 4.44
323 324 2.278596 CCGCATCGATCGAACGGT 60.279 61.111 36.00 16.70 40.63 4.83
324 325 2.293627 CCGCATCGATCGAACGGTC 61.294 63.158 36.00 19.06 40.63 4.79
325 326 1.298413 CGCATCGATCGAACGGTCT 60.298 57.895 26.90 8.21 0.00 3.85
326 327 1.532343 CGCATCGATCGAACGGTCTG 61.532 60.000 26.90 18.95 0.00 3.51
327 328 0.248498 GCATCGATCGAACGGTCTGA 60.248 55.000 23.50 0.00 0.00 3.27
328 329 1.797713 GCATCGATCGAACGGTCTGAA 60.798 52.381 23.50 0.00 0.00 3.02
329 330 2.526077 CATCGATCGAACGGTCTGAAA 58.474 47.619 23.50 0.00 0.00 2.69
330 331 1.973138 TCGATCGAACGGTCTGAAAC 58.027 50.000 16.99 0.00 0.00 2.78
331 332 0.633733 CGATCGAACGGTCTGAAACG 59.366 55.000 10.26 5.13 0.00 3.60
332 333 0.365859 GATCGAACGGTCTGAAACGC 59.634 55.000 0.00 0.00 0.00 4.84
333 334 0.319211 ATCGAACGGTCTGAAACGCA 60.319 50.000 0.00 0.00 0.00 5.24
334 335 0.319211 TCGAACGGTCTGAAACGCAT 60.319 50.000 0.00 0.00 0.00 4.73
335 336 0.093026 CGAACGGTCTGAAACGCATC 59.907 55.000 0.00 2.44 0.00 3.91
336 337 1.144969 GAACGGTCTGAAACGCATCA 58.855 50.000 0.00 0.00 0.00 3.07
337 338 1.529438 GAACGGTCTGAAACGCATCAA 59.471 47.619 0.00 0.00 0.00 2.57
338 339 1.148310 ACGGTCTGAAACGCATCAAG 58.852 50.000 3.33 0.00 0.00 3.02
339 340 0.179215 CGGTCTGAAACGCATCAAGC 60.179 55.000 0.00 0.00 40.87 4.01
340 341 0.874390 GGTCTGAAACGCATCAAGCA 59.126 50.000 0.00 0.00 46.13 3.91
341 342 1.266718 GGTCTGAAACGCATCAAGCAA 59.733 47.619 0.00 0.00 46.13 3.91
342 343 2.287547 GGTCTGAAACGCATCAAGCAAA 60.288 45.455 0.00 0.00 46.13 3.68
343 344 3.568538 GTCTGAAACGCATCAAGCAAAT 58.431 40.909 0.00 0.00 46.13 2.32
344 345 3.983344 GTCTGAAACGCATCAAGCAAATT 59.017 39.130 0.00 0.00 46.13 1.82
345 346 3.982701 TCTGAAACGCATCAAGCAAATTG 59.017 39.130 0.00 0.00 46.13 2.32
354 355 3.574284 TCAAGCAAATTGATCCAACGG 57.426 42.857 0.00 0.00 43.09 4.44
355 356 1.994779 CAAGCAAATTGATCCAACGGC 59.005 47.619 0.00 0.00 41.83 5.68
356 357 0.532115 AGCAAATTGATCCAACGGCC 59.468 50.000 0.00 0.00 0.00 6.13
357 358 0.246086 GCAAATTGATCCAACGGCCA 59.754 50.000 2.24 0.00 0.00 5.36
358 359 1.736696 GCAAATTGATCCAACGGCCAG 60.737 52.381 2.24 0.00 0.00 4.85
359 360 1.818060 CAAATTGATCCAACGGCCAGA 59.182 47.619 2.24 0.00 0.00 3.86
360 361 2.214376 AATTGATCCAACGGCCAGAA 57.786 45.000 2.24 0.00 0.00 3.02
361 362 2.214376 ATTGATCCAACGGCCAGAAA 57.786 45.000 2.24 0.00 0.00 2.52
362 363 2.214376 TTGATCCAACGGCCAGAAAT 57.786 45.000 2.24 0.00 0.00 2.17
363 364 1.750193 TGATCCAACGGCCAGAAATC 58.250 50.000 2.24 0.00 0.00 2.17
364 365 0.657840 GATCCAACGGCCAGAAATCG 59.342 55.000 2.24 0.00 0.00 3.34
365 366 1.376609 ATCCAACGGCCAGAAATCGC 61.377 55.000 2.24 0.00 0.00 4.58
366 367 2.040544 CCAACGGCCAGAAATCGCT 61.041 57.895 2.24 0.00 0.00 4.93
367 368 0.742990 CCAACGGCCAGAAATCGCTA 60.743 55.000 2.24 0.00 0.00 4.26
368 369 1.083489 CAACGGCCAGAAATCGCTAA 58.917 50.000 2.24 0.00 0.00 3.09
369 370 1.670811 CAACGGCCAGAAATCGCTAAT 59.329 47.619 2.24 0.00 0.00 1.73
370 371 1.583054 ACGGCCAGAAATCGCTAATC 58.417 50.000 2.24 0.00 0.00 1.75
371 372 0.508641 CGGCCAGAAATCGCTAATCG 59.491 55.000 2.24 0.00 40.15 3.34
372 373 0.235926 GGCCAGAAATCGCTAATCGC 59.764 55.000 0.00 0.00 38.27 4.58
373 374 1.221414 GCCAGAAATCGCTAATCGCT 58.779 50.000 0.00 0.00 38.27 4.93
374 375 1.070309 GCCAGAAATCGCTAATCGCTG 60.070 52.381 0.00 0.00 38.27 5.18
375 376 2.473816 CCAGAAATCGCTAATCGCTGA 58.526 47.619 0.00 0.00 38.27 4.26
376 377 2.474359 CCAGAAATCGCTAATCGCTGAG 59.526 50.000 0.00 0.00 38.27 3.35
377 378 3.375642 CAGAAATCGCTAATCGCTGAGA 58.624 45.455 0.00 0.00 38.27 3.27
378 379 3.424861 CAGAAATCGCTAATCGCTGAGAG 59.575 47.826 0.00 0.00 38.27 3.20
379 380 1.777101 AATCGCTAATCGCTGAGAGC 58.223 50.000 0.00 0.00 38.27 4.09
388 389 4.883026 GCTGAGAGCGTTCGGTAA 57.117 55.556 0.00 0.00 0.00 2.85
389 390 2.654939 GCTGAGAGCGTTCGGTAAG 58.345 57.895 0.00 0.00 0.00 2.34
390 391 1.414527 GCTGAGAGCGTTCGGTAAGC 61.415 60.000 0.00 4.08 0.00 3.09
391 392 1.134530 CTGAGAGCGTTCGGTAAGCG 61.135 60.000 0.00 0.00 35.78 4.68
392 393 1.154073 GAGAGCGTTCGGTAAGCGT 60.154 57.895 0.00 0.00 35.78 5.07
393 394 1.132780 GAGAGCGTTCGGTAAGCGTC 61.133 60.000 0.00 0.00 35.78 5.19
394 395 1.154073 GAGCGTTCGGTAAGCGTCT 60.154 57.895 0.00 0.00 35.78 4.18
395 396 1.403972 GAGCGTTCGGTAAGCGTCTG 61.404 60.000 0.00 0.00 35.78 3.51
396 397 1.443194 GCGTTCGGTAAGCGTCTGA 60.443 57.895 0.00 0.00 0.00 3.27
397 398 1.005294 GCGTTCGGTAAGCGTCTGAA 61.005 55.000 0.00 0.00 0.00 3.02
398 399 1.625616 CGTTCGGTAAGCGTCTGAAT 58.374 50.000 4.11 0.00 33.61 2.57
399 400 1.582502 CGTTCGGTAAGCGTCTGAATC 59.417 52.381 4.11 0.00 33.61 2.52
400 401 1.925185 GTTCGGTAAGCGTCTGAATCC 59.075 52.381 4.11 0.00 33.61 3.01
401 402 1.471119 TCGGTAAGCGTCTGAATCCT 58.529 50.000 0.00 0.00 0.00 3.24
402 403 1.822990 TCGGTAAGCGTCTGAATCCTT 59.177 47.619 0.00 0.00 0.00 3.36
403 404 3.018856 TCGGTAAGCGTCTGAATCCTTA 58.981 45.455 0.00 0.00 0.00 2.69
404 405 3.635373 TCGGTAAGCGTCTGAATCCTTAT 59.365 43.478 0.00 0.00 0.00 1.73
405 406 4.098960 TCGGTAAGCGTCTGAATCCTTATT 59.901 41.667 0.00 0.00 0.00 1.40
406 407 4.809426 CGGTAAGCGTCTGAATCCTTATTT 59.191 41.667 0.00 0.00 0.00 1.40
407 408 5.050972 CGGTAAGCGTCTGAATCCTTATTTC 60.051 44.000 0.00 0.00 0.00 2.17
408 409 6.049790 GGTAAGCGTCTGAATCCTTATTTCT 58.950 40.000 0.00 0.00 0.00 2.52
409 410 6.201234 GGTAAGCGTCTGAATCCTTATTTCTC 59.799 42.308 0.00 0.00 0.00 2.87
410 411 4.363999 AGCGTCTGAATCCTTATTTCTCG 58.636 43.478 0.00 0.00 0.00 4.04
411 412 4.098044 AGCGTCTGAATCCTTATTTCTCGA 59.902 41.667 0.00 0.00 0.00 4.04
423 424 9.877178 ATCCTTATTTCTCGATATGTACCAATC 57.123 33.333 0.00 0.00 0.00 2.67
424 425 8.027189 TCCTTATTTCTCGATATGTACCAATCG 58.973 37.037 16.67 16.67 44.88 3.34
438 439 1.269174 CCAATCGTGCCACAACAATCA 59.731 47.619 0.00 0.00 0.00 2.57
439 440 2.288091 CCAATCGTGCCACAACAATCAA 60.288 45.455 0.00 0.00 0.00 2.57
443 444 1.978097 CGTGCCACAACAATCAATTCG 59.022 47.619 0.00 0.00 0.00 3.34
449 450 4.168014 CCACAACAATCAATTCGTGATGG 58.832 43.478 0.00 0.00 46.80 3.51
464 465 1.341285 TGATGGCCAAGACATCCCAAG 60.341 52.381 10.96 0.00 46.69 3.61
465 466 0.032813 ATGGCCAAGACATCCCAAGG 60.033 55.000 10.96 0.00 0.00 3.61
470 471 0.329261 CAAGACATCCCAAGGCAGGA 59.671 55.000 0.00 0.00 37.93 3.86
487 488 4.322567 GCAGGAATAGAGGCTGGATTTAG 58.677 47.826 0.00 0.00 0.00 1.85
488 489 4.322567 CAGGAATAGAGGCTGGATTTAGC 58.677 47.826 0.00 0.00 42.94 3.09
512 513 3.814005 ACGGTAAAAGACAGACACAGT 57.186 42.857 0.00 0.00 0.00 3.55
515 516 5.045872 ACGGTAAAAGACAGACACAGTAAC 58.954 41.667 0.00 0.00 0.00 2.50
525 526 4.337555 ACAGACACAGTAACTACGACAACT 59.662 41.667 0.00 0.00 0.00 3.16
527 528 3.973657 ACACAGTAACTACGACAACTGG 58.026 45.455 6.31 0.00 42.87 4.00
531 532 6.028368 CACAGTAACTACGACAACTGGATAG 58.972 44.000 6.31 0.00 42.87 2.08
532 533 5.709164 ACAGTAACTACGACAACTGGATAGT 59.291 40.000 6.31 0.00 42.87 2.12
533 534 6.881065 ACAGTAACTACGACAACTGGATAGTA 59.119 38.462 6.31 0.00 42.87 1.82
535 536 8.239314 CAGTAACTACGACAACTGGATAGTAAA 58.761 37.037 0.00 0.00 35.69 2.01
539 540 8.517062 ACTACGACAACTGGATAGTAAATAGT 57.483 34.615 0.00 0.00 35.69 2.12
540 541 8.404000 ACTACGACAACTGGATAGTAAATAGTG 58.596 37.037 0.00 0.00 35.69 2.74
541 542 7.166691 ACGACAACTGGATAGTAAATAGTGT 57.833 36.000 0.00 0.00 35.69 3.55
546 547 6.636562 ACTGGATAGTAAATAGTGTCCGAG 57.363 41.667 6.58 7.37 39.11 4.63
556 557 2.161486 GTGTCCGAGCGATCACAGC 61.161 63.158 0.00 0.00 0.00 4.40
578 579 2.500442 CGAGCGACGCTAACAGCTG 61.500 63.158 24.55 13.48 39.88 4.24
647 648 2.413796 TGCGTTGCCGTTTACTGAATAG 59.586 45.455 0.00 0.00 36.15 1.73
860 869 1.694169 GAGATTCCCTGCCTCCCCA 60.694 63.158 0.00 0.00 0.00 4.96
1012 1036 4.899239 CCGACATGGCGCTCCCTC 62.899 72.222 17.71 0.00 0.00 4.30
1065 1098 2.611751 CGTGTTCCAACTGTCACATTCA 59.388 45.455 0.00 0.00 0.00 2.57
1068 1101 3.498018 TGTTCCAACTGTCACATTCATCG 59.502 43.478 0.00 0.00 0.00 3.84
1089 1122 2.740981 GTCAGGTCAGAATTGCTCAGTG 59.259 50.000 0.00 0.00 0.00 3.66
1092 1125 1.457346 GTCAGAATTGCTCAGTGGGG 58.543 55.000 0.00 0.00 0.00 4.96
1198 1231 2.147387 AAGGTCAGGGCGGTGAACT 61.147 57.895 0.39 0.39 46.96 3.01
1301 1334 1.203013 TCTCTCTTGTTCTCGGACCCA 60.203 52.381 0.00 0.00 0.00 4.51
1302 1335 1.618837 CTCTCTTGTTCTCGGACCCAA 59.381 52.381 0.00 0.00 0.00 4.12
1306 1339 2.370519 TCTTGTTCTCGGACCCAAATGA 59.629 45.455 0.00 0.00 0.00 2.57
1472 1506 1.203441 TGGACCAGGATGCTGCTTCT 61.203 55.000 9.03 0.50 31.97 2.85
1555 1612 1.615392 ACTGTTTGGGAAGCTGAATGC 59.385 47.619 0.00 0.00 43.29 3.56
1595 1652 6.072728 TGTTGGATATCTTGGAGAAAACAACG 60.073 38.462 2.05 0.00 34.45 4.10
1606 1663 8.610248 TTGGAGAAAACAACGTTGAATAGATA 57.390 30.769 33.66 11.06 0.00 1.98
1614 1671 5.579119 ACAACGTTGAATAGATACATTCGCA 59.421 36.000 33.66 0.00 37.68 5.10
1666 1724 2.982470 GCGCTCCATTTTTGTTCTTCTG 59.018 45.455 0.00 0.00 0.00 3.02
1739 1798 7.829211 CCTTCAAAGACAATATTCTGGTTCCTA 59.171 37.037 0.00 0.00 0.00 2.94
1771 1830 2.032290 GGTCTTTAACTCACCAACGTGC 60.032 50.000 0.00 0.00 40.04 5.34
1774 1833 0.881159 TTAACTCACCAACGTGCCCG 60.881 55.000 0.00 0.00 40.04 6.13
1775 1834 2.718747 TAACTCACCAACGTGCCCGG 62.719 60.000 0.00 0.00 40.04 5.73
1780 1839 4.958897 CCAACGTGCCCGGGGAAA 62.959 66.667 25.28 0.00 38.78 3.13
1781 1840 2.907917 CAACGTGCCCGGGGAAAA 60.908 61.111 25.28 0.00 38.78 2.29
1782 1841 2.123812 AACGTGCCCGGGGAAAAA 60.124 55.556 25.28 0.00 38.78 1.94
1848 1937 2.435069 TGTCACGAAGTTTAAGGACCCA 59.565 45.455 0.00 0.00 41.61 4.51
1859 1948 2.653543 AAGGACCCATGTAGTACCCA 57.346 50.000 0.00 0.00 0.00 4.51
1896 1985 7.309920 GGAAAACTGAACTGTTTTTACACAGA 58.690 34.615 18.25 0.00 46.29 3.41
1904 1993 3.758554 CTGTTTTTACACAGATCAGGGGG 59.241 47.826 0.00 0.00 46.29 5.40
1947 2036 3.689347 TGCAGATGGCTGAATTGTACTT 58.311 40.909 0.00 0.00 45.17 2.24
1951 2156 5.396484 CAGATGGCTGAATTGTACTTTGTG 58.604 41.667 0.00 0.00 45.17 3.33
2036 2241 4.093011 ACATTTGTCCTCTAGAGCTGTCT 58.907 43.478 14.73 0.00 36.75 3.41
2125 2330 9.148104 ACAATCGTATCTTAGTTTGTTCCTAAC 57.852 33.333 0.00 0.00 29.15 2.34
2186 2391 7.939039 AGTTTCTGATAGTGAATTTCAGTTCCA 59.061 33.333 11.81 9.25 38.39 3.53
2193 2398 3.319122 GTGAATTTCAGTTCCAGTGCCTT 59.681 43.478 0.00 0.00 0.00 4.35
2214 2419 5.163854 CCTTAATGGTCAGTTCTTAACAGCG 60.164 44.000 0.00 0.00 0.00 5.18
2232 2437 4.584743 ACAGCGAGTAATCAGGATGTGATA 59.415 41.667 0.00 0.00 45.89 2.15
2242 2447 4.700700 TCAGGATGTGATATCAGCAACTG 58.299 43.478 21.22 21.22 37.40 3.16
2286 2491 7.899330 TCCGAAACATTTTATATCGAACGAAAC 59.101 33.333 0.12 0.00 35.65 2.78
2401 2606 5.105554 GCACTCTCATCAGACTCCTTTCTAA 60.106 44.000 0.00 0.00 0.00 2.10
2402 2607 6.406849 GCACTCTCATCAGACTCCTTTCTAAT 60.407 42.308 0.00 0.00 0.00 1.73
2403 2608 7.555087 CACTCTCATCAGACTCCTTTCTAATT 58.445 38.462 0.00 0.00 0.00 1.40
2405 2610 9.432982 ACTCTCATCAGACTCCTTTCTAATTAT 57.567 33.333 0.00 0.00 0.00 1.28
2487 2706 7.275560 ACAAACAACAATCAGCTTACTTCAAAC 59.724 33.333 0.00 0.00 0.00 2.93
2493 2712 6.313905 ACAATCAGCTTACTTCAAACTATCGG 59.686 38.462 0.00 0.00 0.00 4.18
2662 2881 0.542938 TCACCTCCTCCCAGTCTGTG 60.543 60.000 0.00 0.00 0.00 3.66
2688 2907 5.714333 TGCAGAGTTTTATCCCATAAAAGCA 59.286 36.000 2.34 5.79 43.21 3.91
2756 2975 8.349983 GCTTTGTTACTGGAAATGACTTCTTTA 58.650 33.333 0.00 0.00 34.17 1.85
2776 2995 2.004583 TCCTCTCGCAAAACGGTATG 57.995 50.000 0.00 0.00 43.89 2.39
2923 3142 6.715264 CCCTAAACTGTCCTTGATTGTTACTT 59.285 38.462 0.00 0.00 0.00 2.24
3253 3474 4.459390 TTTCTTGATGATGCCATTGGTG 57.541 40.909 4.26 0.00 32.09 4.17
3270 3491 0.798776 GTGACATCAGGCCACGAAAG 59.201 55.000 5.01 0.93 0.00 2.62
3272 3493 1.202758 TGACATCAGGCCACGAAAGTT 60.203 47.619 5.01 0.00 46.40 2.66
3275 3496 2.812011 ACATCAGGCCACGAAAGTTAAC 59.188 45.455 5.01 0.00 46.40 2.01
3299 3520 3.242011 AGGCATCACCAAGTTGGAAAAT 58.758 40.909 28.80 14.48 40.96 1.82
3305 3526 6.294731 GCATCACCAAGTTGGAAAATAGACTT 60.295 38.462 28.80 0.00 40.96 3.01
3306 3527 6.877611 TCACCAAGTTGGAAAATAGACTTC 57.122 37.500 28.80 0.00 40.96 3.01
3321 3542 7.487822 AATAGACTTCCAGTTCTCATTCTCA 57.512 36.000 0.00 0.00 0.00 3.27
3330 3551 8.316497 TCCAGTTCTCATTCTCAATAGATCTT 57.684 34.615 0.00 0.00 0.00 2.40
3390 3611 5.482163 AAATAAAAGGTGGTGGACAATGG 57.518 39.130 0.00 0.00 0.00 3.16
3392 3613 0.831711 AAAGGTGGTGGACAATGGGC 60.832 55.000 0.00 0.00 0.00 5.36
3396 3617 3.070576 GGTGGACAATGGGCAGCC 61.071 66.667 1.26 1.26 0.00 4.85
3420 3641 1.293267 GCATTTGCGCAACTTGGCAT 61.293 50.000 24.99 9.85 39.21 4.40
3421 3642 1.149987 CATTTGCGCAACTTGGCATT 58.850 45.000 24.99 0.00 39.21 3.56
3422 3643 2.335752 CATTTGCGCAACTTGGCATTA 58.664 42.857 24.99 4.87 39.21 1.90
3423 3644 1.777101 TTTGCGCAACTTGGCATTAC 58.223 45.000 24.99 0.00 39.21 1.89
3424 3645 0.958091 TTGCGCAACTTGGCATTACT 59.042 45.000 21.02 0.00 39.21 2.24
3425 3646 0.521291 TGCGCAACTTGGCATTACTC 59.479 50.000 8.16 0.00 33.52 2.59
3426 3647 0.521291 GCGCAACTTGGCATTACTCA 59.479 50.000 0.30 0.00 0.00 3.41
3434 3655 6.128742 GCAACTTGGCATTACTCATTTTTCAG 60.129 38.462 0.00 0.00 0.00 3.02
3464 3685 7.406031 TGTACTCTTGGTCACTAGAATAAGG 57.594 40.000 0.00 0.00 0.00 2.69
3467 3691 5.659079 ACTCTTGGTCACTAGAATAAGGGAG 59.341 44.000 0.00 0.00 26.75 4.30
3503 3736 7.556733 TCGGAAAACATGTTAACAACTAACT 57.443 32.000 13.23 0.00 40.62 2.24
3514 3747 8.997621 TGTTAACAACTAACTATGTCTGATCC 57.002 34.615 5.64 0.00 40.62 3.36
3516 3749 5.916661 ACAACTAACTATGTCTGATCCGT 57.083 39.130 0.00 0.00 0.00 4.69
3529 3762 4.098044 GTCTGATCCGTTCACTAATGAGGA 59.902 45.833 0.00 0.00 35.83 3.71
3543 3776 8.200120 TCACTAATGAGGAGATACATGAAAGTG 58.800 37.037 0.00 0.00 35.87 3.16
3558 3791 4.935702 TGAAAGTGAAGAGCCATGTTTTG 58.064 39.130 0.00 0.00 0.00 2.44
3563 3796 4.219288 AGTGAAGAGCCATGTTTTGGATTC 59.781 41.667 0.00 0.00 46.58 2.52
3564 3797 4.022068 GTGAAGAGCCATGTTTTGGATTCA 60.022 41.667 0.00 0.44 46.58 2.57
3566 3799 2.827921 AGAGCCATGTTTTGGATTCACC 59.172 45.455 0.00 0.00 46.58 4.02
3567 3800 1.545582 AGCCATGTTTTGGATTCACCG 59.454 47.619 0.00 0.00 43.17 4.94
3568 3801 2.817463 AGCCATGTTTTGGATTCACCGA 60.817 45.455 0.00 0.00 43.17 4.69
3569 3802 4.922765 AGCCATGTTTTGGATTCACCGAC 61.923 47.826 0.00 0.00 43.17 4.79
3570 3803 3.913548 CATGTTTTGGATTCACCGACA 57.086 42.857 0.00 0.00 42.61 4.35
3573 3810 5.948588 CATGTTTTGGATTCACCGACATTA 58.051 37.500 0.00 0.00 42.61 1.90
3576 3813 6.987386 TGTTTTGGATTCACCGACATTATTT 58.013 32.000 0.00 0.00 42.61 1.40
3581 3818 6.616947 TGGATTCACCGACATTATTTTTCAC 58.383 36.000 0.00 0.00 42.61 3.18
3582 3819 6.207614 TGGATTCACCGACATTATTTTTCACA 59.792 34.615 0.00 0.00 42.61 3.58
3587 3824 7.652727 TCACCGACATTATTTTTCACATGAAA 58.347 30.769 0.00 2.89 41.77 2.69
3637 3874 7.478520 TCTCAGTTCTAACAAAGTAACAAGC 57.521 36.000 0.00 0.00 0.00 4.01
3701 3939 5.502153 TTCTAGGTATCGAGCTTCTGAAC 57.498 43.478 0.00 0.00 34.50 3.18
3728 3966 3.713650 GCAGGAGCAGTCCCACTA 58.286 61.111 0.00 0.00 45.26 2.74
3851 4089 4.142790 CAATGGAGCTTTATCAGGCTGAT 58.857 43.478 30.89 30.89 40.72 2.90
3857 4095 2.502295 CTTTATCAGGCTGATCTGGGC 58.498 52.381 31.94 3.48 38.26 5.36
4077 4315 5.476945 ACAGGTCATTTGGATTTTGGTCTAC 59.523 40.000 0.00 0.00 0.00 2.59
4090 4329 7.393515 GGATTTTGGTCTACCATTTAACTGAGT 59.606 37.037 1.96 0.00 46.97 3.41
4184 4423 0.311790 ATGTGGCAAACGCTTCACAG 59.688 50.000 0.00 0.00 42.34 3.66
4274 4513 1.510480 GGACAGTCAGGTGCAACAGC 61.510 60.000 3.64 0.00 39.98 4.40
4317 4556 4.981054 GGAACGTAAGGAATCGGTATCTTC 59.019 45.833 0.00 0.00 46.39 2.87
4371 6198 2.035449 TCAACTCCAGTCACTTACCACG 59.965 50.000 0.00 0.00 0.00 4.94
4411 6322 4.554683 ACCTGTTAATCCTACCTACTCCC 58.445 47.826 0.00 0.00 0.00 4.30
4413 6324 5.437714 ACCTGTTAATCCTACCTACTCCCTA 59.562 44.000 0.00 0.00 0.00 3.53
4414 6325 5.774184 CCTGTTAATCCTACCTACTCCCTAC 59.226 48.000 0.00 0.00 0.00 3.18
4416 6327 6.744822 TGTTAATCCTACCTACTCCCTACAA 58.255 40.000 0.00 0.00 0.00 2.41
4418 6329 8.513658 TGTTAATCCTACCTACTCCCTACAATA 58.486 37.037 0.00 0.00 0.00 1.90
4419 6330 8.801299 GTTAATCCTACCTACTCCCTACAATAC 58.199 40.741 0.00 0.00 0.00 1.89
4420 6331 6.800223 ATCCTACCTACTCCCTACAATACT 57.200 41.667 0.00 0.00 0.00 2.12
4421 6332 7.901804 ATCCTACCTACTCCCTACAATACTA 57.098 40.000 0.00 0.00 0.00 1.82
4424 6335 8.740512 TCCTACCTACTCCCTACAATACTAAAT 58.259 37.037 0.00 0.00 0.00 1.40
4425 6336 9.022884 CCTACCTACTCCCTACAATACTAAATC 57.977 40.741 0.00 0.00 0.00 2.17
4427 6338 8.480133 ACCTACTCCCTACAATACTAAATCAG 57.520 38.462 0.00 0.00 0.00 2.90
4428 6339 7.015389 ACCTACTCCCTACAATACTAAATCAGC 59.985 40.741 0.00 0.00 0.00 4.26
4429 6340 5.844004 ACTCCCTACAATACTAAATCAGCG 58.156 41.667 0.00 0.00 0.00 5.18
4430 6341 5.363005 ACTCCCTACAATACTAAATCAGCGT 59.637 40.000 0.00 0.00 0.00 5.07
4494 6422 0.461961 TTTGGCCCAGTTTTGAACGG 59.538 50.000 0.00 0.00 36.23 4.44
4501 6429 2.034179 CCCAGTTTTGAACGGAAGAACC 59.966 50.000 0.00 0.00 36.23 3.62
4517 6445 6.376018 CGGAAGAACCCAAAACATAGGAATAA 59.624 38.462 0.00 0.00 34.64 1.40
4519 6447 7.614192 GGAAGAACCCAAAACATAGGAATAAGA 59.386 37.037 0.00 0.00 0.00 2.10
4522 6450 9.374711 AGAACCCAAAACATAGGAATAAGAAAA 57.625 29.630 0.00 0.00 0.00 2.29
4554 6482 9.965824 CGCAGGAATTAAAACCATAGAATTTAT 57.034 29.630 4.53 0.00 0.00 1.40
4613 6551 1.175983 GGTGTCATGCGGGGAAAACA 61.176 55.000 0.00 0.00 0.00 2.83
4648 6586 9.081997 GTAGACACAAAGAGAAGAATACATGAG 57.918 37.037 0.00 0.00 0.00 2.90
4703 6641 5.387113 TCTAGGGTATGGCATGTTTCATT 57.613 39.130 10.98 0.00 0.00 2.57
4720 7732 6.828273 TGTTTCATTGGAATGTAGGATACCAG 59.172 38.462 0.00 0.00 42.12 4.00
4777 7792 9.862149 TTTCTATAGGAATCATACCCTTTTTCC 57.138 33.333 0.00 0.00 36.84 3.13
4780 7795 9.868160 CTATAGGAATCATACCCTTTTTCCTTT 57.132 33.333 7.73 3.58 42.69 3.11
4781 7796 6.857437 AGGAATCATACCCTTTTTCCTTTG 57.143 37.500 0.00 0.00 42.69 2.77
4783 7798 6.787458 AGGAATCATACCCTTTTTCCTTTGTT 59.213 34.615 0.00 0.00 42.69 2.83
4784 7799 7.039011 AGGAATCATACCCTTTTTCCTTTGTTC 60.039 37.037 0.00 0.00 42.69 3.18
4785 7800 6.605471 ATCATACCCTTTTTCCTTTGTTCC 57.395 37.500 0.00 0.00 0.00 3.62
4786 7801 5.459505 TCATACCCTTTTTCCTTTGTTCCA 58.540 37.500 0.00 0.00 0.00 3.53
4787 7802 5.900123 TCATACCCTTTTTCCTTTGTTCCAA 59.100 36.000 0.00 0.00 0.00 3.53
4788 7803 6.384305 TCATACCCTTTTTCCTTTGTTCCAAA 59.616 34.615 0.00 0.00 0.00 3.28
4789 7804 4.839121 ACCCTTTTTCCTTTGTTCCAAAC 58.161 39.130 0.00 0.00 0.00 2.93
4790 7805 4.287326 ACCCTTTTTCCTTTGTTCCAAACA 59.713 37.500 0.00 0.00 40.21 2.83
4791 7806 5.045213 ACCCTTTTTCCTTTGTTCCAAACAT 60.045 36.000 0.00 0.00 41.79 2.71
4792 7807 5.296531 CCCTTTTTCCTTTGTTCCAAACATG 59.703 40.000 0.00 0.00 41.79 3.21
4793 7808 5.296531 CCTTTTTCCTTTGTTCCAAACATGG 59.703 40.000 0.00 0.69 41.79 3.66
4794 7809 3.467374 TTCCTTTGTTCCAAACATGGC 57.533 42.857 0.00 0.00 41.79 4.40
4795 7810 1.691434 TCCTTTGTTCCAAACATGGCC 59.309 47.619 0.00 0.00 41.79 5.36
4796 7811 1.605202 CCTTTGTTCCAAACATGGCCG 60.605 52.381 0.00 0.00 41.79 6.13
4797 7812 1.068434 CTTTGTTCCAAACATGGCCGT 59.932 47.619 0.00 0.00 41.79 5.68
4798 7813 1.982660 TTGTTCCAAACATGGCCGTA 58.017 45.000 0.00 0.00 41.79 4.02
4799 7814 1.982660 TGTTCCAAACATGGCCGTAA 58.017 45.000 0.00 0.00 36.25 3.18
4800 7815 1.883275 TGTTCCAAACATGGCCGTAAG 59.117 47.619 0.00 0.00 36.25 2.34
4812 7827 2.082231 GGCCGTAAGTTTTTCCTCTCC 58.918 52.381 0.00 0.00 0.00 3.71
4871 7887 0.040058 TGGCCGTAACTACCTGAGGA 59.960 55.000 4.99 0.00 0.00 3.71
4874 7890 2.961062 GGCCGTAACTACCTGAGGATAA 59.039 50.000 4.99 0.00 0.00 1.75
4883 7899 0.687354 CCTGAGGATAACCGATGGGG 59.313 60.000 0.00 0.00 41.83 4.96
4912 7980 0.950555 TGCATCCAAGACAGTCGTGC 60.951 55.000 10.77 10.03 0.00 5.34
4956 8024 9.729281 ATTTCCTTTTGCAGTTTGATTCAATAT 57.271 25.926 0.00 0.00 0.00 1.28
5100 8171 6.521162 ACGTTGATACAATAGACATATGGCA 58.479 36.000 12.11 0.00 0.00 4.92
5101 8172 6.989759 ACGTTGATACAATAGACATATGGCAA 59.010 34.615 12.11 0.00 0.00 4.52
5102 8173 7.497579 ACGTTGATACAATAGACATATGGCAAA 59.502 33.333 12.11 0.00 0.00 3.68
5127 8198 5.982890 AAAATAGTCCACATTTGACAGGG 57.017 39.130 0.00 0.00 35.15 4.45
5158 8229 2.325583 AGCGTCAAAGACAACTCCAA 57.674 45.000 0.00 0.00 32.09 3.53
5164 8235 4.035091 CGTCAAAGACAACTCCAAATGTCA 59.965 41.667 8.43 0.00 46.55 3.58
5168 8239 5.520376 AAGACAACTCCAAATGTCAAAGG 57.480 39.130 8.43 0.00 46.55 3.11
5243 8331 1.265635 AGCGTCAAAATGTTTAGCGCA 59.734 42.857 11.47 0.00 44.83 6.09
5454 8542 6.206498 TCATTCCGTATGACTTATCTGTTCG 58.794 40.000 0.00 0.00 38.35 3.95
5470 8623 6.241207 TCTGTTCGAAATTGTGAATTCTCC 57.759 37.500 7.05 0.00 0.00 3.71
5768 8923 0.506932 AACGACGAATGTTGTGCGAG 59.493 50.000 0.00 0.00 42.03 5.03
5877 9032 2.526304 ACTAAGCGTGCAGTTCTCAA 57.474 45.000 0.00 0.00 0.00 3.02
5889 9044 7.621013 GCGTGCAGTTCTCAATTATATCTCATC 60.621 40.741 0.00 0.00 0.00 2.92
6090 9245 4.899502 ACAAAAGAGGAGTGTACTGATGG 58.100 43.478 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.949705 GATTCGCTGCTTCCTCCCCC 62.950 65.000 0.00 0.00 0.00 5.40
7 8 1.524849 GATTCGCTGCTTCCTCCCC 60.525 63.158 0.00 0.00 0.00 4.81
8 9 1.884926 CGATTCGCTGCTTCCTCCC 60.885 63.158 0.00 0.00 0.00 4.30
9 10 3.711348 CGATTCGCTGCTTCCTCC 58.289 61.111 0.00 0.00 0.00 4.30
20 21 0.385473 ACTTGCCGTTTTGCGATTCG 60.385 50.000 0.62 0.62 44.77 3.34
21 22 1.052287 CACTTGCCGTTTTGCGATTC 58.948 50.000 0.00 0.00 44.77 2.52
22 23 0.383949 ACACTTGCCGTTTTGCGATT 59.616 45.000 0.00 0.00 44.77 3.34
23 24 0.383949 AACACTTGCCGTTTTGCGAT 59.616 45.000 0.00 0.00 44.77 4.58
24 25 0.524392 CAACACTTGCCGTTTTGCGA 60.524 50.000 0.00 0.00 44.77 5.10
25 26 0.524392 TCAACACTTGCCGTTTTGCG 60.524 50.000 0.00 0.00 34.16 4.85
26 27 0.920664 GTCAACACTTGCCGTTTTGC 59.079 50.000 0.00 0.00 34.16 3.68
27 28 1.134175 AGGTCAACACTTGCCGTTTTG 59.866 47.619 0.00 0.00 35.19 2.44
28 29 1.470051 AGGTCAACACTTGCCGTTTT 58.530 45.000 0.00 0.00 33.78 2.43
29 30 2.158871 TCTAGGTCAACACTTGCCGTTT 60.159 45.455 0.00 0.00 33.78 3.60
30 31 1.414919 TCTAGGTCAACACTTGCCGTT 59.585 47.619 0.00 0.00 33.78 4.44
31 32 1.045407 TCTAGGTCAACACTTGCCGT 58.955 50.000 0.00 0.00 33.78 5.68
32 33 1.429463 GTCTAGGTCAACACTTGCCG 58.571 55.000 0.00 0.00 33.78 5.69
33 34 1.429463 CGTCTAGGTCAACACTTGCC 58.571 55.000 0.00 0.00 0.00 4.52
34 35 0.790814 GCGTCTAGGTCAACACTTGC 59.209 55.000 0.00 0.00 0.00 4.01
35 36 1.060713 CGCGTCTAGGTCAACACTTG 58.939 55.000 0.00 0.00 0.00 3.16
36 37 0.956633 TCGCGTCTAGGTCAACACTT 59.043 50.000 5.77 0.00 0.00 3.16
37 38 0.956633 TTCGCGTCTAGGTCAACACT 59.043 50.000 5.77 0.00 0.00 3.55
38 39 1.774639 TTTCGCGTCTAGGTCAACAC 58.225 50.000 5.77 0.00 0.00 3.32
39 40 2.029739 TCATTTCGCGTCTAGGTCAACA 60.030 45.455 5.77 0.00 0.00 3.33
40 41 2.344741 GTCATTTCGCGTCTAGGTCAAC 59.655 50.000 5.77 0.00 0.00 3.18
41 42 2.230508 AGTCATTTCGCGTCTAGGTCAA 59.769 45.455 5.77 0.00 0.00 3.18
42 43 1.816835 AGTCATTTCGCGTCTAGGTCA 59.183 47.619 5.77 0.00 0.00 4.02
43 44 2.563471 AGTCATTTCGCGTCTAGGTC 57.437 50.000 5.77 0.00 0.00 3.85
44 45 4.445452 TTTAGTCATTTCGCGTCTAGGT 57.555 40.909 5.77 0.00 0.00 3.08
45 46 5.728255 CATTTTAGTCATTTCGCGTCTAGG 58.272 41.667 5.77 0.00 0.00 3.02
46 47 5.191059 GCATTTTAGTCATTTCGCGTCTAG 58.809 41.667 5.77 0.00 0.00 2.43
47 48 4.033587 GGCATTTTAGTCATTTCGCGTCTA 59.966 41.667 5.77 0.00 0.00 2.59
48 49 3.181510 GGCATTTTAGTCATTTCGCGTCT 60.182 43.478 5.77 0.00 0.00 4.18
49 50 3.098636 GGCATTTTAGTCATTTCGCGTC 58.901 45.455 5.77 0.00 0.00 5.19
50 51 2.159435 GGGCATTTTAGTCATTTCGCGT 60.159 45.455 5.77 0.00 0.00 6.01
51 52 2.097466 AGGGCATTTTAGTCATTTCGCG 59.903 45.455 0.00 0.00 0.00 5.87
52 53 3.695816 GAGGGCATTTTAGTCATTTCGC 58.304 45.455 0.00 0.00 0.00 4.70
53 54 3.242739 CCGAGGGCATTTTAGTCATTTCG 60.243 47.826 0.00 0.00 0.00 3.46
54 55 4.292977 CCGAGGGCATTTTAGTCATTTC 57.707 45.455 0.00 0.00 0.00 2.17
74 75 4.435970 AAATTCCCGTCCCCCGCC 62.436 66.667 0.00 0.00 34.38 6.13
75 76 2.827190 GAAATTCCCGTCCCCCGC 60.827 66.667 0.00 0.00 34.38 6.13
76 77 2.512974 CGAAATTCCCGTCCCCCG 60.513 66.667 0.00 0.00 0.00 5.73
77 78 2.124445 CCGAAATTCCCGTCCCCC 60.124 66.667 0.00 0.00 0.00 5.40
78 79 2.827190 GCCGAAATTCCCGTCCCC 60.827 66.667 0.00 0.00 0.00 4.81
79 80 3.199891 CGCCGAAATTCCCGTCCC 61.200 66.667 0.00 0.00 0.00 4.46
80 81 3.199891 CCGCCGAAATTCCCGTCC 61.200 66.667 0.00 0.00 0.00 4.79
81 82 2.435410 ACCGCCGAAATTCCCGTC 60.435 61.111 0.00 0.00 0.00 4.79
82 83 2.744709 CACCGCCGAAATTCCCGT 60.745 61.111 0.00 0.00 0.00 5.28
83 84 3.505184 CCACCGCCGAAATTCCCG 61.505 66.667 0.00 0.00 0.00 5.14
84 85 3.822192 GCCACCGCCGAAATTCCC 61.822 66.667 0.00 0.00 0.00 3.97
85 86 2.414785 ATGCCACCGCCGAAATTCC 61.415 57.895 0.00 0.00 0.00 3.01
86 87 1.226660 CATGCCACCGCCGAAATTC 60.227 57.895 0.00 0.00 0.00 2.17
87 88 1.656818 CTCATGCCACCGCCGAAATT 61.657 55.000 0.00 0.00 0.00 1.82
88 89 2.045438 TCATGCCACCGCCGAAAT 60.045 55.556 0.00 0.00 0.00 2.17
89 90 2.535485 ATCTCATGCCACCGCCGAAA 62.535 55.000 0.00 0.00 0.00 3.46
90 91 2.923426 GATCTCATGCCACCGCCGAA 62.923 60.000 0.00 0.00 0.00 4.30
91 92 3.445518 GATCTCATGCCACCGCCGA 62.446 63.158 0.00 0.00 0.00 5.54
92 93 2.930385 AAGATCTCATGCCACCGCCG 62.930 60.000 0.00 0.00 0.00 6.46
93 94 0.749454 AAAGATCTCATGCCACCGCC 60.749 55.000 0.00 0.00 0.00 6.13
94 95 1.098050 AAAAGATCTCATGCCACCGC 58.902 50.000 0.00 0.00 0.00 5.68
95 96 2.614057 GGTAAAAGATCTCATGCCACCG 59.386 50.000 0.00 0.00 0.00 4.94
96 97 2.614057 CGGTAAAAGATCTCATGCCACC 59.386 50.000 13.01 7.05 0.00 4.61
97 98 3.270877 ACGGTAAAAGATCTCATGCCAC 58.729 45.455 13.01 0.39 0.00 5.01
98 99 3.627395 ACGGTAAAAGATCTCATGCCA 57.373 42.857 13.01 0.00 0.00 4.92
99 100 3.065371 CCAACGGTAAAAGATCTCATGCC 59.935 47.826 0.00 0.00 0.00 4.40
100 101 3.938963 TCCAACGGTAAAAGATCTCATGC 59.061 43.478 0.00 0.00 0.00 4.06
101 102 4.332819 GGTCCAACGGTAAAAGATCTCATG 59.667 45.833 0.00 0.00 0.00 3.07
102 103 4.514401 GGTCCAACGGTAAAAGATCTCAT 58.486 43.478 0.00 0.00 0.00 2.90
103 104 3.615592 CGGTCCAACGGTAAAAGATCTCA 60.616 47.826 0.00 0.00 0.00 3.27
104 105 2.928116 CGGTCCAACGGTAAAAGATCTC 59.072 50.000 0.00 0.00 0.00 2.75
105 106 2.933928 GCGGTCCAACGGTAAAAGATCT 60.934 50.000 0.00 0.00 0.00 2.75
106 107 1.395954 GCGGTCCAACGGTAAAAGATC 59.604 52.381 0.00 0.00 0.00 2.75
107 108 1.445871 GCGGTCCAACGGTAAAAGAT 58.554 50.000 0.00 0.00 0.00 2.40
108 109 0.945265 CGCGGTCCAACGGTAAAAGA 60.945 55.000 0.00 0.00 0.00 2.52
109 110 1.494189 CGCGGTCCAACGGTAAAAG 59.506 57.895 0.00 0.00 0.00 2.27
110 111 2.606030 GCGCGGTCCAACGGTAAAA 61.606 57.895 8.83 0.00 0.00 1.52
111 112 3.043121 GCGCGGTCCAACGGTAAA 61.043 61.111 8.83 0.00 0.00 2.01
149 150 3.004946 ATTTGCTTGGGCTGGGGC 61.005 61.111 0.00 0.00 39.59 5.80
150 151 1.610086 TCATTTGCTTGGGCTGGGG 60.610 57.895 0.00 0.00 39.59 4.96
151 152 1.186917 TGTCATTTGCTTGGGCTGGG 61.187 55.000 0.00 0.00 39.59 4.45
152 153 0.899720 ATGTCATTTGCTTGGGCTGG 59.100 50.000 0.00 0.00 39.59 4.85
153 154 2.004583 CATGTCATTTGCTTGGGCTG 57.995 50.000 0.00 0.00 39.59 4.85
154 155 0.248289 GCATGTCATTTGCTTGGGCT 59.752 50.000 0.00 0.00 39.59 5.19
155 156 1.079875 CGCATGTCATTTGCTTGGGC 61.080 55.000 0.00 0.00 37.96 5.36
156 157 0.458889 CCGCATGTCATTTGCTTGGG 60.459 55.000 0.00 0.00 37.96 4.12
157 158 0.458889 CCCGCATGTCATTTGCTTGG 60.459 55.000 0.00 0.00 37.96 3.61
158 159 1.079875 GCCCGCATGTCATTTGCTTG 61.080 55.000 0.00 0.00 37.96 4.01
159 160 1.216178 GCCCGCATGTCATTTGCTT 59.784 52.632 0.00 0.00 37.96 3.91
160 161 2.713967 GGCCCGCATGTCATTTGCT 61.714 57.895 0.00 0.00 37.96 3.91
161 162 2.202783 GGCCCGCATGTCATTTGC 60.203 61.111 0.00 0.00 36.74 3.68
162 163 2.495866 GGGCCCGCATGTCATTTG 59.504 61.111 5.69 0.00 0.00 2.32
163 164 2.759560 GGGGCCCGCATGTCATTT 60.760 61.111 17.79 0.00 0.00 2.32
164 165 3.378472 ATGGGGCCCGCATGTCATT 62.378 57.895 21.12 1.27 35.72 2.57
165 166 3.797507 GATGGGGCCCGCATGTCAT 62.798 63.158 25.29 17.68 37.16 3.06
166 167 4.504596 GATGGGGCCCGCATGTCA 62.505 66.667 25.29 13.78 37.16 3.58
167 168 4.195334 AGATGGGGCCCGCATGTC 62.195 66.667 25.29 15.34 37.16 3.06
168 169 4.511246 CAGATGGGGCCCGCATGT 62.511 66.667 25.29 19.99 37.16 3.21
189 190 3.053896 GCTGCCGTGTGGGGTAAC 61.054 66.667 0.00 0.00 35.78 2.50
190 191 4.690719 CGCTGCCGTGTGGGGTAA 62.691 66.667 0.00 0.00 35.78 2.85
202 203 4.415332 TCGTTCCGGTCTCGCTGC 62.415 66.667 0.00 0.00 34.56 5.25
203 204 2.202492 CTCGTTCCGGTCTCGCTG 60.202 66.667 0.00 0.00 34.56 5.18
204 205 2.672307 ACTCGTTCCGGTCTCGCT 60.672 61.111 0.00 0.00 34.56 4.93
205 206 2.202453 GACTCGTTCCGGTCTCGC 60.202 66.667 0.00 0.00 34.56 5.03
206 207 2.484203 GGACTCGTTCCGGTCTCG 59.516 66.667 0.00 5.32 33.46 4.04
213 214 2.087009 CACTTCGCGGACTCGTTCC 61.087 63.158 6.13 0.00 41.75 3.62
214 215 1.066114 CTCACTTCGCGGACTCGTTC 61.066 60.000 6.13 0.00 38.89 3.95
215 216 1.081376 CTCACTTCGCGGACTCGTT 60.081 57.895 6.13 0.00 38.89 3.85
216 217 1.913451 CTCTCACTTCGCGGACTCGT 61.913 60.000 6.13 0.00 38.89 4.18
217 218 1.226156 CTCTCACTTCGCGGACTCG 60.226 63.158 6.13 0.00 39.81 4.18
218 219 0.098025 CTCTCTCACTTCGCGGACTC 59.902 60.000 6.13 0.00 0.00 3.36
219 220 0.321741 TCTCTCTCACTTCGCGGACT 60.322 55.000 6.13 0.00 0.00 3.85
220 221 0.179184 GTCTCTCTCACTTCGCGGAC 60.179 60.000 6.13 0.00 0.00 4.79
221 222 1.306642 GGTCTCTCTCACTTCGCGGA 61.307 60.000 6.13 0.00 0.00 5.54
222 223 1.137825 GGTCTCTCTCACTTCGCGG 59.862 63.158 6.13 0.00 0.00 6.46
223 224 1.226156 CGGTCTCTCTCACTTCGCG 60.226 63.158 0.00 0.00 0.00 5.87
224 225 1.137825 CCGGTCTCTCTCACTTCGC 59.862 63.158 0.00 0.00 0.00 4.70
225 226 0.677098 TCCCGGTCTCTCTCACTTCG 60.677 60.000 0.00 0.00 0.00 3.79
226 227 1.099689 CTCCCGGTCTCTCTCACTTC 58.900 60.000 0.00 0.00 0.00 3.01
227 228 0.699399 TCTCCCGGTCTCTCTCACTT 59.301 55.000 0.00 0.00 0.00 3.16
228 229 0.254747 CTCTCCCGGTCTCTCTCACT 59.745 60.000 0.00 0.00 0.00 3.41
229 230 0.750182 CCTCTCCCGGTCTCTCTCAC 60.750 65.000 0.00 0.00 0.00 3.51
230 231 1.610327 CCTCTCCCGGTCTCTCTCA 59.390 63.158 0.00 0.00 0.00 3.27
231 232 1.152839 CCCTCTCCCGGTCTCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
232 233 3.011885 CCCTCTCCCGGTCTCTCT 58.988 66.667 0.00 0.00 0.00 3.10
233 234 2.835895 GCCCTCTCCCGGTCTCTC 60.836 72.222 0.00 0.00 0.00 3.20
234 235 3.670629 CTGCCCTCTCCCGGTCTCT 62.671 68.421 0.00 0.00 0.00 3.10
235 236 2.569218 TACTGCCCTCTCCCGGTCTC 62.569 65.000 0.00 0.00 0.00 3.36
236 237 2.164332 TTACTGCCCTCTCCCGGTCT 62.164 60.000 0.00 0.00 0.00 3.85
237 238 1.684734 TTACTGCCCTCTCCCGGTC 60.685 63.158 0.00 0.00 0.00 4.79
238 239 1.988406 GTTACTGCCCTCTCCCGGT 60.988 63.158 0.00 0.00 0.00 5.28
239 240 0.396695 TAGTTACTGCCCTCTCCCGG 60.397 60.000 0.00 0.00 0.00 5.73
240 241 1.705873 ATAGTTACTGCCCTCTCCCG 58.294 55.000 0.00 0.00 0.00 5.14
241 242 3.039011 TGAATAGTTACTGCCCTCTCCC 58.961 50.000 0.00 0.00 0.00 4.30
242 243 4.965200 ATGAATAGTTACTGCCCTCTCC 57.035 45.455 0.00 0.00 0.00 3.71
243 244 4.513318 GCAATGAATAGTTACTGCCCTCTC 59.487 45.833 0.00 0.00 0.00 3.20
244 245 4.164988 AGCAATGAATAGTTACTGCCCTCT 59.835 41.667 0.00 0.00 0.00 3.69
245 246 4.455606 AGCAATGAATAGTTACTGCCCTC 58.544 43.478 0.00 0.00 0.00 4.30
246 247 4.510167 AGCAATGAATAGTTACTGCCCT 57.490 40.909 0.00 0.00 0.00 5.19
247 248 5.123227 TGTAGCAATGAATAGTTACTGCCC 58.877 41.667 0.00 0.00 0.00 5.36
248 249 5.237344 CCTGTAGCAATGAATAGTTACTGCC 59.763 44.000 0.00 0.00 0.00 4.85
249 250 5.277538 GCCTGTAGCAATGAATAGTTACTGC 60.278 44.000 0.00 0.00 42.97 4.40
250 251 5.050769 CGCCTGTAGCAATGAATAGTTACTG 60.051 44.000 0.00 0.00 44.04 2.74
251 252 5.050490 CGCCTGTAGCAATGAATAGTTACT 58.950 41.667 0.00 0.00 44.04 2.24
252 253 4.318831 GCGCCTGTAGCAATGAATAGTTAC 60.319 45.833 0.00 0.00 44.04 2.50
253 254 3.807622 GCGCCTGTAGCAATGAATAGTTA 59.192 43.478 0.00 0.00 44.04 2.24
254 255 2.614057 GCGCCTGTAGCAATGAATAGTT 59.386 45.455 0.00 0.00 44.04 2.24
255 256 2.213499 GCGCCTGTAGCAATGAATAGT 58.787 47.619 0.00 0.00 44.04 2.12
256 257 1.193203 CGCGCCTGTAGCAATGAATAG 59.807 52.381 0.00 0.00 44.04 1.73
257 258 1.217001 CGCGCCTGTAGCAATGAATA 58.783 50.000 0.00 0.00 44.04 1.75
258 259 1.439353 CCGCGCCTGTAGCAATGAAT 61.439 55.000 0.00 0.00 44.04 2.57
259 260 2.106074 CCGCGCCTGTAGCAATGAA 61.106 57.895 0.00 0.00 44.04 2.57
260 261 2.511373 CCGCGCCTGTAGCAATGA 60.511 61.111 0.00 0.00 44.04 2.57
261 262 3.576356 CCCGCGCCTGTAGCAATG 61.576 66.667 0.00 0.00 44.04 2.82
262 263 4.856801 CCCCGCGCCTGTAGCAAT 62.857 66.667 0.00 0.00 44.04 3.56
280 281 3.969250 TTCTGGCCGTTGGATCGCC 62.969 63.158 0.00 1.90 0.00 5.54
281 282 1.376609 AATTCTGGCCGTTGGATCGC 61.377 55.000 0.00 0.00 0.00 4.58
282 283 1.094785 AAATTCTGGCCGTTGGATCG 58.905 50.000 0.00 0.00 0.00 3.69
283 284 3.056891 TGAAAAATTCTGGCCGTTGGATC 60.057 43.478 0.00 0.00 0.00 3.36
284 285 2.896685 TGAAAAATTCTGGCCGTTGGAT 59.103 40.909 0.00 0.00 0.00 3.41
285 286 2.035321 GTGAAAAATTCTGGCCGTTGGA 59.965 45.455 0.00 0.00 0.00 3.53
286 287 2.403259 GTGAAAAATTCTGGCCGTTGG 58.597 47.619 0.00 0.00 0.00 3.77
287 288 2.403259 GGTGAAAAATTCTGGCCGTTG 58.597 47.619 0.00 0.00 0.00 4.10
288 289 1.000717 CGGTGAAAAATTCTGGCCGTT 60.001 47.619 0.00 0.00 36.35 4.44
289 290 0.596082 CGGTGAAAAATTCTGGCCGT 59.404 50.000 0.00 0.00 36.35 5.68
290 291 0.732538 GCGGTGAAAAATTCTGGCCG 60.733 55.000 0.00 12.99 40.37 6.13
291 292 0.316841 TGCGGTGAAAAATTCTGGCC 59.683 50.000 0.00 0.00 0.00 5.36
292 293 2.262211 GATGCGGTGAAAAATTCTGGC 58.738 47.619 0.00 0.00 0.00 4.85
293 294 2.161410 TCGATGCGGTGAAAAATTCTGG 59.839 45.455 0.00 0.00 0.00 3.86
294 295 3.469899 TCGATGCGGTGAAAAATTCTG 57.530 42.857 0.00 0.00 0.00 3.02
295 296 3.242413 CGATCGATGCGGTGAAAAATTCT 60.242 43.478 10.26 0.00 0.00 2.40
296 297 3.029074 CGATCGATGCGGTGAAAAATTC 58.971 45.455 10.26 0.00 0.00 2.17
297 298 2.675844 TCGATCGATGCGGTGAAAAATT 59.324 40.909 15.15 0.00 0.00 1.82
298 299 2.276201 TCGATCGATGCGGTGAAAAAT 58.724 42.857 15.15 0.00 0.00 1.82
299 300 1.715993 TCGATCGATGCGGTGAAAAA 58.284 45.000 15.15 0.00 0.00 1.94
300 301 1.392168 GTTCGATCGATGCGGTGAAAA 59.608 47.619 20.18 0.00 0.00 2.29
301 302 0.996462 GTTCGATCGATGCGGTGAAA 59.004 50.000 20.18 0.00 0.00 2.69
302 303 1.137459 CGTTCGATCGATGCGGTGAA 61.137 55.000 25.17 6.29 0.00 3.18
303 304 1.585261 CGTTCGATCGATGCGGTGA 60.585 57.895 25.17 6.95 0.00 4.02
304 305 2.576893 CCGTTCGATCGATGCGGTG 61.577 63.158 34.11 20.55 37.85 4.94
305 306 2.278596 CCGTTCGATCGATGCGGT 60.279 61.111 34.11 0.00 37.85 5.68
306 307 2.278596 ACCGTTCGATCGATGCGG 60.279 61.111 37.38 37.38 43.49 5.69
307 308 1.298413 AGACCGTTCGATCGATGCG 60.298 57.895 25.62 25.62 0.00 4.73
308 309 0.248498 TCAGACCGTTCGATCGATGC 60.248 55.000 20.18 13.77 0.00 3.91
309 310 2.188837 TTCAGACCGTTCGATCGATG 57.811 50.000 20.18 13.06 0.00 3.84
310 311 2.527100 GTTTCAGACCGTTCGATCGAT 58.473 47.619 20.18 3.14 0.00 3.59
311 312 1.726892 CGTTTCAGACCGTTCGATCGA 60.727 52.381 15.15 15.15 0.00 3.59
312 313 0.633733 CGTTTCAGACCGTTCGATCG 59.366 55.000 9.36 9.36 0.00 3.69
313 314 0.365859 GCGTTTCAGACCGTTCGATC 59.634 55.000 0.00 0.00 0.00 3.69
314 315 0.319211 TGCGTTTCAGACCGTTCGAT 60.319 50.000 0.00 0.00 0.00 3.59
315 316 0.319211 ATGCGTTTCAGACCGTTCGA 60.319 50.000 0.00 0.00 0.00 3.71
316 317 0.093026 GATGCGTTTCAGACCGTTCG 59.907 55.000 0.00 0.00 0.00 3.95
317 318 1.144969 TGATGCGTTTCAGACCGTTC 58.855 50.000 0.00 0.00 0.00 3.95
318 319 1.531149 CTTGATGCGTTTCAGACCGTT 59.469 47.619 0.00 0.00 0.00 4.44
319 320 1.148310 CTTGATGCGTTTCAGACCGT 58.852 50.000 0.00 0.00 0.00 4.83
320 321 0.179215 GCTTGATGCGTTTCAGACCG 60.179 55.000 0.00 0.00 0.00 4.79
321 322 0.874390 TGCTTGATGCGTTTCAGACC 59.126 50.000 0.00 0.00 46.63 3.85
322 323 2.686558 TTGCTTGATGCGTTTCAGAC 57.313 45.000 0.00 0.00 46.63 3.51
323 324 3.921119 ATTTGCTTGATGCGTTTCAGA 57.079 38.095 0.00 0.00 46.63 3.27
324 325 3.982701 TCAATTTGCTTGATGCGTTTCAG 59.017 39.130 0.00 0.00 46.63 3.02
325 326 3.974912 TCAATTTGCTTGATGCGTTTCA 58.025 36.364 0.00 0.00 46.63 2.69
335 336 1.994779 GCCGTTGGATCAATTTGCTTG 59.005 47.619 0.00 0.00 36.09 4.01
336 337 1.066929 GGCCGTTGGATCAATTTGCTT 60.067 47.619 0.00 0.00 0.00 3.91
337 338 0.532115 GGCCGTTGGATCAATTTGCT 59.468 50.000 0.00 0.00 0.00 3.91
338 339 0.246086 TGGCCGTTGGATCAATTTGC 59.754 50.000 0.00 0.00 0.00 3.68
339 340 1.818060 TCTGGCCGTTGGATCAATTTG 59.182 47.619 0.00 0.00 0.00 2.32
340 341 2.214376 TCTGGCCGTTGGATCAATTT 57.786 45.000 0.00 0.00 0.00 1.82
341 342 2.214376 TTCTGGCCGTTGGATCAATT 57.786 45.000 0.00 0.00 0.00 2.32
342 343 2.214376 TTTCTGGCCGTTGGATCAAT 57.786 45.000 0.00 0.00 0.00 2.57
343 344 2.091541 GATTTCTGGCCGTTGGATCAA 58.908 47.619 0.00 0.00 0.00 2.57
344 345 1.750193 GATTTCTGGCCGTTGGATCA 58.250 50.000 0.00 0.00 0.00 2.92
345 346 0.657840 CGATTTCTGGCCGTTGGATC 59.342 55.000 0.00 0.00 0.00 3.36
346 347 1.376609 GCGATTTCTGGCCGTTGGAT 61.377 55.000 0.00 0.00 0.00 3.41
347 348 2.038269 GCGATTTCTGGCCGTTGGA 61.038 57.895 0.00 0.00 0.00 3.53
348 349 0.742990 TAGCGATTTCTGGCCGTTGG 60.743 55.000 0.00 0.00 0.00 3.77
349 350 1.083489 TTAGCGATTTCTGGCCGTTG 58.917 50.000 0.00 0.00 0.00 4.10
350 351 1.940613 GATTAGCGATTTCTGGCCGTT 59.059 47.619 0.00 0.00 0.00 4.44
351 352 1.583054 GATTAGCGATTTCTGGCCGT 58.417 50.000 0.00 0.00 0.00 5.68
352 353 0.508641 CGATTAGCGATTTCTGGCCG 59.491 55.000 0.00 0.00 44.57 6.13
353 354 0.235926 GCGATTAGCGATTTCTGGCC 59.764 55.000 0.00 0.00 44.57 5.36
354 355 3.736581 GCGATTAGCGATTTCTGGC 57.263 52.632 0.00 0.00 44.57 4.85
371 372 1.414527 GCTTACCGAACGCTCTCAGC 61.415 60.000 0.00 0.00 38.02 4.26
372 373 1.134530 CGCTTACCGAACGCTCTCAG 61.135 60.000 0.00 0.00 40.02 3.35
373 374 1.154093 CGCTTACCGAACGCTCTCA 60.154 57.895 0.00 0.00 40.02 3.27
374 375 1.132780 GACGCTTACCGAACGCTCTC 61.133 60.000 0.00 0.00 41.02 3.20
375 376 1.154073 GACGCTTACCGAACGCTCT 60.154 57.895 0.00 0.00 41.02 4.09
376 377 1.154073 AGACGCTTACCGAACGCTC 60.154 57.895 0.00 0.00 41.02 5.03
377 378 1.443872 CAGACGCTTACCGAACGCT 60.444 57.895 0.00 0.00 41.02 5.07
378 379 1.005294 TTCAGACGCTTACCGAACGC 61.005 55.000 0.00 0.00 41.02 4.84
379 380 1.582502 GATTCAGACGCTTACCGAACG 59.417 52.381 0.00 0.00 41.02 3.95
380 381 1.925185 GGATTCAGACGCTTACCGAAC 59.075 52.381 0.00 0.00 41.02 3.95
381 382 1.822990 AGGATTCAGACGCTTACCGAA 59.177 47.619 0.00 0.00 41.02 4.30
382 383 1.471119 AGGATTCAGACGCTTACCGA 58.529 50.000 0.00 0.00 41.02 4.69
383 384 2.295253 AAGGATTCAGACGCTTACCG 57.705 50.000 0.00 0.00 44.21 4.02
384 385 6.049790 AGAAATAAGGATTCAGACGCTTACC 58.950 40.000 0.00 0.00 0.00 2.85
385 386 6.074782 CGAGAAATAAGGATTCAGACGCTTAC 60.075 42.308 0.00 0.00 0.00 2.34
386 387 5.977725 CGAGAAATAAGGATTCAGACGCTTA 59.022 40.000 0.00 0.00 0.00 3.09
387 388 4.806247 CGAGAAATAAGGATTCAGACGCTT 59.194 41.667 0.00 0.00 0.00 4.68
388 389 4.098044 TCGAGAAATAAGGATTCAGACGCT 59.902 41.667 0.00 0.00 0.00 5.07
389 390 4.360563 TCGAGAAATAAGGATTCAGACGC 58.639 43.478 0.00 0.00 0.00 5.19
390 391 7.810282 ACATATCGAGAAATAAGGATTCAGACG 59.190 37.037 0.00 0.00 0.00 4.18
393 394 9.360093 GGTACATATCGAGAAATAAGGATTCAG 57.640 37.037 0.00 0.00 0.00 3.02
394 395 8.866093 TGGTACATATCGAGAAATAAGGATTCA 58.134 33.333 0.00 0.00 0.00 2.57
395 396 9.706691 TTGGTACATATCGAGAAATAAGGATTC 57.293 33.333 0.00 0.00 39.30 2.52
397 398 9.877178 GATTGGTACATATCGAGAAATAAGGAT 57.123 33.333 0.00 0.00 39.30 3.24
398 399 8.027189 CGATTGGTACATATCGAGAAATAAGGA 58.973 37.037 18.60 0.00 45.13 3.36
399 400 7.813148 ACGATTGGTACATATCGAGAAATAAGG 59.187 37.037 25.94 3.74 45.13 2.69
400 401 8.639428 CACGATTGGTACATATCGAGAAATAAG 58.361 37.037 25.94 8.88 45.13 1.73
401 402 7.115805 GCACGATTGGTACATATCGAGAAATAA 59.884 37.037 25.94 0.00 45.13 1.40
402 403 6.584942 GCACGATTGGTACATATCGAGAAATA 59.415 38.462 25.94 0.00 45.13 1.40
403 404 5.405571 GCACGATTGGTACATATCGAGAAAT 59.594 40.000 25.94 8.63 45.13 2.17
404 405 4.743151 GCACGATTGGTACATATCGAGAAA 59.257 41.667 25.94 0.00 45.13 2.52
405 406 4.295870 GCACGATTGGTACATATCGAGAA 58.704 43.478 25.94 0.00 45.13 2.87
406 407 3.305131 GGCACGATTGGTACATATCGAGA 60.305 47.826 25.94 0.00 45.13 4.04
407 408 2.987149 GGCACGATTGGTACATATCGAG 59.013 50.000 25.94 21.02 45.13 4.04
408 409 2.362717 TGGCACGATTGGTACATATCGA 59.637 45.455 25.94 8.91 45.13 3.59
409 410 2.475111 GTGGCACGATTGGTACATATCG 59.525 50.000 20.59 20.59 46.46 2.92
410 411 3.462982 TGTGGCACGATTGGTACATATC 58.537 45.455 13.77 0.00 39.30 1.63
411 412 3.552132 TGTGGCACGATTGGTACATAT 57.448 42.857 13.77 0.00 39.30 1.78
422 423 2.350293 CGAATTGATTGTTGTGGCACGA 60.350 45.455 13.77 8.59 0.00 4.35
423 424 1.978097 CGAATTGATTGTTGTGGCACG 59.022 47.619 13.77 0.00 0.00 5.34
424 425 2.725723 CACGAATTGATTGTTGTGGCAC 59.274 45.455 11.55 11.55 0.00 5.01
438 439 2.198827 TGTCTTGGCCATCACGAATT 57.801 45.000 6.09 0.00 0.00 2.17
439 440 2.292267 GATGTCTTGGCCATCACGAAT 58.708 47.619 6.09 0.00 38.82 3.34
443 444 0.034186 TGGGATGTCTTGGCCATCAC 60.034 55.000 6.09 6.99 42.01 3.06
447 448 1.383799 CCTTGGGATGTCTTGGCCA 59.616 57.895 0.00 0.00 0.00 5.36
449 450 1.304381 TGCCTTGGGATGTCTTGGC 60.304 57.895 0.00 0.00 40.62 4.52
464 465 1.063183 ATCCAGCCTCTATTCCTGCC 58.937 55.000 0.00 0.00 0.00 4.85
465 466 2.947127 AATCCAGCCTCTATTCCTGC 57.053 50.000 0.00 0.00 0.00 4.85
487 488 1.534163 GTCTGTCTTTTACCGTTGGGC 59.466 52.381 0.00 0.00 36.48 5.36
488 489 2.546789 GTGTCTGTCTTTTACCGTTGGG 59.453 50.000 0.00 0.00 40.11 4.12
492 493 3.814005 ACTGTGTCTGTCTTTTACCGT 57.186 42.857 0.00 0.00 0.00 4.83
515 516 8.404000 ACACTATTTACTATCCAGTTGTCGTAG 58.596 37.037 0.00 0.00 36.14 3.51
525 526 4.023450 CGCTCGGACACTATTTACTATCCA 60.023 45.833 0.00 0.00 0.00 3.41
527 528 5.354054 TCGCTCGGACACTATTTACTATC 57.646 43.478 0.00 0.00 0.00 2.08
531 532 3.729716 GTGATCGCTCGGACACTATTTAC 59.270 47.826 0.00 0.00 0.00 2.01
532 533 3.379057 TGTGATCGCTCGGACACTATTTA 59.621 43.478 7.94 0.24 34.81 1.40
533 534 2.165641 TGTGATCGCTCGGACACTATTT 59.834 45.455 7.94 0.00 34.81 1.40
535 536 1.335182 CTGTGATCGCTCGGACACTAT 59.665 52.381 7.94 0.00 34.81 2.12
537 538 1.508545 CTGTGATCGCTCGGACACT 59.491 57.895 7.94 0.00 34.81 3.55
538 539 2.161486 GCTGTGATCGCTCGGACAC 61.161 63.158 7.94 10.69 0.00 3.67
539 540 2.181777 GCTGTGATCGCTCGGACA 59.818 61.111 7.94 0.00 0.00 4.02
540 541 2.583593 GGCTGTGATCGCTCGGAC 60.584 66.667 7.94 0.00 0.00 4.79
541 542 4.193334 CGGCTGTGATCGCTCGGA 62.193 66.667 7.94 0.00 0.00 4.55
559 560 3.248171 GCTGTTAGCGTCGCTCGG 61.248 66.667 25.50 16.36 40.44 4.63
647 648 0.031585 TGACGCAGGTCGCCATATAC 59.968 55.000 0.00 0.00 46.49 1.47
767 776 1.557443 GGTGGAGACGCAAACGAGTG 61.557 60.000 0.00 0.00 44.70 3.51
975 999 1.004927 GCAATACGTCGAACAGATGGC 60.005 52.381 0.00 0.00 40.15 4.40
1017 1050 0.744771 GACCAAAGATCAGGACGCCC 60.745 60.000 5.95 0.00 0.00 6.13
1065 1098 2.234661 TGAGCAATTCTGACCTGACGAT 59.765 45.455 0.00 0.00 0.00 3.73
1068 1101 2.740981 CACTGAGCAATTCTGACCTGAC 59.259 50.000 0.00 0.00 0.00 3.51
1089 1122 1.683385 GCATCCATTTAAGCAGTCCCC 59.317 52.381 0.00 0.00 0.00 4.81
1092 1125 2.017049 ACCGCATCCATTTAAGCAGTC 58.983 47.619 0.00 0.00 0.00 3.51
1198 1231 3.970410 CACCAGCCAGCCTCCCAA 61.970 66.667 0.00 0.00 0.00 4.12
1301 1334 8.224389 TGCACAGCACTATATAACAATCATTT 57.776 30.769 0.00 0.00 31.71 2.32
1302 1335 7.806409 TGCACAGCACTATATAACAATCATT 57.194 32.000 0.00 0.00 31.71 2.57
1306 1339 7.436080 GCAAAATGCACAGCACTATATAACAAT 59.564 33.333 0.00 0.00 43.04 2.71
1472 1506 6.043938 AGTTTACCTTGAAAGTCTCCCATGTA 59.956 38.462 0.00 0.00 0.00 2.29
1555 1612 8.735315 AGATATCCAACAGACAAGATACGATAG 58.265 37.037 0.00 0.00 46.19 2.08
1557 1614 7.531857 AGATATCCAACAGACAAGATACGAT 57.468 36.000 0.00 0.00 0.00 3.73
1559 1616 6.422100 CCAAGATATCCAACAGACAAGATACG 59.578 42.308 0.00 0.00 0.00 3.06
1595 1652 7.630026 TGTTGATGCGAATGTATCTATTCAAC 58.370 34.615 0.00 0.00 37.99 3.18
1606 1663 3.181487 GGCCTAAATGTTGATGCGAATGT 60.181 43.478 0.00 0.00 0.00 2.71
1614 1671 4.613437 ACAATGAGGGCCTAAATGTTGAT 58.387 39.130 5.73 0.00 0.00 2.57
1647 1704 7.425606 TCTTTACAGAAGAACAAAAATGGAGC 58.574 34.615 0.00 0.00 0.00 4.70
1666 1724 8.976986 ATTGCATTTTCATCTCAGTTCTTTAC 57.023 30.769 0.00 0.00 0.00 2.01
1739 1798 6.881602 GGTGAGTTAAAGACCTGATGATCTTT 59.118 38.462 4.77 4.77 45.07 2.52
1789 1848 1.227823 TTCCTGAGCCACGTTGGTG 60.228 57.895 0.00 0.00 40.46 4.17
1790 1849 1.071471 CTTCCTGAGCCACGTTGGT 59.929 57.895 0.00 0.00 40.46 3.67
1791 1850 0.951040 GTCTTCCTGAGCCACGTTGG 60.951 60.000 0.00 0.00 41.55 3.77
1792 1851 0.951040 GGTCTTCCTGAGCCACGTTG 60.951 60.000 0.00 0.00 37.22 4.10
1793 1852 1.122019 AGGTCTTCCTGAGCCACGTT 61.122 55.000 0.00 0.00 43.33 3.99
1794 1853 0.251653 TAGGTCTTCCTGAGCCACGT 60.252 55.000 0.00 0.00 44.81 4.49
1795 1854 0.457851 CTAGGTCTTCCTGAGCCACG 59.542 60.000 0.00 0.00 44.81 4.94
1796 1855 1.562783 ACTAGGTCTTCCTGAGCCAC 58.437 55.000 0.00 0.00 44.81 5.01
1797 1856 2.327325 AACTAGGTCTTCCTGAGCCA 57.673 50.000 0.00 0.00 44.81 4.75
1798 1857 5.360649 AATTAACTAGGTCTTCCTGAGCC 57.639 43.478 0.00 0.00 44.81 4.70
1799 1858 7.783042 TCTAAATTAACTAGGTCTTCCTGAGC 58.217 38.462 0.00 0.00 44.81 4.26
1848 1937 3.458487 CCTTAAGCCCTTGGGTACTACAT 59.542 47.826 7.61 0.00 30.99 2.29
1859 1948 2.449345 TCAGTTTTCCCCTTAAGCCCTT 59.551 45.455 0.00 0.00 0.00 3.95
1904 1993 6.040391 TGCATATTACCAAGCAGTATTTTCCC 59.960 38.462 0.00 0.00 32.48 3.97
1905 1994 7.038154 TGCATATTACCAAGCAGTATTTTCC 57.962 36.000 0.00 0.00 32.48 3.13
1947 2036 1.815613 CTGGGAAACACACACACACAA 59.184 47.619 0.00 0.00 0.00 3.33
1951 2156 0.738389 CCACTGGGAAACACACACAC 59.262 55.000 0.00 0.00 35.59 3.82
2105 2310 7.900782 TGCAGTTAGGAACAAACTAAGATAC 57.099 36.000 0.00 0.00 35.44 2.24
2125 2330 2.987413 TAACGCCAAGACAAATGCAG 57.013 45.000 0.00 0.00 0.00 4.41
2186 2391 4.373156 AAGAACTGACCATTAAGGCACT 57.627 40.909 0.00 0.00 43.14 4.40
2193 2398 5.142061 TCGCTGTTAAGAACTGACCATTA 57.858 39.130 0.95 0.00 32.71 1.90
2214 2419 6.695429 TGCTGATATCACATCCTGATTACTC 58.305 40.000 0.00 0.00 40.38 2.59
2242 2447 1.134551 GGAGTCTCCTGGTGAATCTGC 60.135 57.143 21.09 8.60 32.53 4.26
2311 2516 3.954258 ACCTGCAAATAGCTCCCATTTAC 59.046 43.478 0.00 0.00 45.94 2.01
2401 2606 6.704289 TGCAATGCTGAAGCTTTAGATAAT 57.296 33.333 21.52 8.69 42.66 1.28
2402 2607 6.324819 GTTGCAATGCTGAAGCTTTAGATAA 58.675 36.000 21.52 6.78 42.66 1.75
2403 2608 5.163622 GGTTGCAATGCTGAAGCTTTAGATA 60.164 40.000 21.52 9.84 42.66 1.98
2405 2610 3.057315 GGTTGCAATGCTGAAGCTTTAGA 60.057 43.478 21.52 7.51 42.66 2.10
2532 2751 3.828451 AGTTGTTGGCAGCTATTGTCATT 59.172 39.130 2.28 0.00 41.93 2.57
2623 2842 4.563184 GTGACACGGCTCTGAAAGTATAAG 59.437 45.833 0.00 0.00 33.76 1.73
2625 2844 3.119245 GGTGACACGGCTCTGAAAGTATA 60.119 47.826 0.00 0.00 33.76 1.47
2629 2848 0.034059 AGGTGACACGGCTCTGAAAG 59.966 55.000 0.00 0.00 0.00 2.62
2662 2881 6.524101 TTTTATGGGATAAAACTCTGCACC 57.476 37.500 0.00 0.00 39.17 5.01
2756 2975 2.167693 TCATACCGTTTTGCGAGAGGAT 59.832 45.455 0.00 0.00 44.77 3.24
2776 2995 2.996631 ACTGGAATCCTGACTGCATTC 58.003 47.619 13.27 0.00 0.00 2.67
2937 3156 6.321181 TGGTGCAGTCTCAAACTTTAAAAGAT 59.679 34.615 0.00 0.00 35.45 2.40
3253 3474 1.523758 AACTTTCGTGGCCTGATGTC 58.476 50.000 3.32 0.00 0.00 3.06
3270 3491 4.584327 ACTTGGTGATGCCTTTGTTAAC 57.416 40.909 0.00 0.00 38.35 2.01
3272 3493 3.320541 CCAACTTGGTGATGCCTTTGTTA 59.679 43.478 0.00 0.00 38.35 2.41
3275 3496 1.962807 TCCAACTTGGTGATGCCTTTG 59.037 47.619 7.72 0.00 39.03 2.77
3305 3526 7.911130 AGATCTATTGAGAATGAGAACTGGA 57.089 36.000 0.00 0.00 34.61 3.86
3306 3527 8.828644 CAAAGATCTATTGAGAATGAGAACTGG 58.171 37.037 0.00 0.00 34.61 4.00
3366 3587 6.156083 CCCATTGTCCACCACCTTTTATTTAT 59.844 38.462 0.00 0.00 0.00 1.40
3367 3588 5.482175 CCCATTGTCCACCACCTTTTATTTA 59.518 40.000 0.00 0.00 0.00 1.40
3371 3592 2.883026 CCCATTGTCCACCACCTTTTA 58.117 47.619 0.00 0.00 0.00 1.52
3378 3599 2.283101 GCTGCCCATTGTCCACCA 60.283 61.111 0.00 0.00 0.00 4.17
3379 3600 3.070576 GGCTGCCCATTGTCCACC 61.071 66.667 7.66 0.00 0.00 4.61
3396 3617 1.921887 CAAGTTGCGCAAATGCCTATG 59.078 47.619 26.87 14.61 37.91 2.23
3402 3623 1.149987 AATGCCAAGTTGCGCAAATG 58.850 45.000 26.87 24.70 38.75 2.32
3409 3630 5.695816 TGAAAAATGAGTAATGCCAAGTTGC 59.304 36.000 0.00 0.00 0.00 4.17
3412 3633 5.010922 TGCTGAAAAATGAGTAATGCCAAGT 59.989 36.000 0.00 0.00 0.00 3.16
3421 3642 9.890629 AGAGTACATATTGCTGAAAAATGAGTA 57.109 29.630 0.00 0.00 0.00 2.59
3422 3643 8.798859 AGAGTACATATTGCTGAAAAATGAGT 57.201 30.769 0.00 0.00 0.00 3.41
3423 3644 9.499585 CAAGAGTACATATTGCTGAAAAATGAG 57.500 33.333 0.00 0.00 0.00 2.90
3424 3645 8.461222 CCAAGAGTACATATTGCTGAAAAATGA 58.539 33.333 0.00 0.00 0.00 2.57
3425 3646 8.246180 ACCAAGAGTACATATTGCTGAAAAATG 58.754 33.333 0.00 0.00 0.00 2.32
3426 3647 8.353423 ACCAAGAGTACATATTGCTGAAAAAT 57.647 30.769 0.00 0.00 0.00 1.82
3434 3655 6.806751 TCTAGTGACCAAGAGTACATATTGC 58.193 40.000 0.00 0.00 0.00 3.56
3463 3684 0.881796 CCGAAGTTGCCTTTTCTCCC 59.118 55.000 0.00 0.00 0.00 4.30
3464 3685 1.892209 TCCGAAGTTGCCTTTTCTCC 58.108 50.000 0.00 0.00 0.00 3.71
3467 3691 3.776340 TGTTTTCCGAAGTTGCCTTTTC 58.224 40.909 0.00 0.00 0.00 2.29
3485 3709 9.772973 TCAGACATAGTTAGTTGTTAACATGTT 57.227 29.630 16.68 16.68 43.38 2.71
3503 3736 6.239036 CCTCATTAGTGAACGGATCAGACATA 60.239 42.308 0.00 0.00 39.19 2.29
3514 3747 6.739112 TCATGTATCTCCTCATTAGTGAACG 58.261 40.000 0.00 0.00 33.05 3.95
3516 3749 8.762645 ACTTTCATGTATCTCCTCATTAGTGAA 58.237 33.333 0.00 0.00 33.05 3.18
3529 3762 5.426689 TGGCTCTTCACTTTCATGTATCT 57.573 39.130 0.00 0.00 0.00 1.98
3558 3791 6.616947 TGTGAAAAATAATGTCGGTGAATCC 58.383 36.000 0.00 0.00 0.00 3.01
3563 3796 7.865875 TTTCATGTGAAAAATAATGTCGGTG 57.134 32.000 5.75 0.00 40.68 4.94
3576 3813 9.219603 AGATAGAATCTCGTTTTTCATGTGAAA 57.780 29.630 4.16 4.16 37.36 2.69
3637 3874 6.949352 ACCTGCAGATAAAAGACAATATGG 57.051 37.500 17.39 0.00 0.00 2.74
3683 3921 2.356382 CTCGTTCAGAAGCTCGATACCT 59.644 50.000 0.00 0.00 0.00 3.08
3701 3939 2.511145 GCTCCTGCAGAAGGCTCG 60.511 66.667 17.39 0.00 46.92 5.03
3851 4089 0.400213 CAGTGTTAGTTGGGCCCAGA 59.600 55.000 26.87 13.70 0.00 3.86
3857 4095 3.945285 AGTCAACAACAGTGTTAGTTGGG 59.055 43.478 29.86 17.90 46.47 4.12
3986 4224 4.081198 ACAAAAACAAGAGGTCCATTTGCA 60.081 37.500 5.53 0.00 33.91 4.08
4090 4329 2.438021 AGCAGGGTACACTGAGAAACAA 59.562 45.455 29.37 0.00 40.97 2.83
4184 4423 7.220875 GCTTTTCCAAAAGATCGGTATTGAATC 59.779 37.037 14.71 0.00 46.39 2.52
4274 4513 2.291465 CCATTCATAATCCCAGTGCACG 59.709 50.000 12.01 6.45 0.00 5.34
4317 4556 7.648142 TGAAGAACAAACTGCTTACCAATAAG 58.352 34.615 0.00 0.00 40.83 1.73
4392 6303 6.345646 TGTAGGGAGTAGGTAGGATTAACA 57.654 41.667 0.00 0.00 0.00 2.41
4396 6307 7.176909 AGTATTGTAGGGAGTAGGTAGGATT 57.823 40.000 0.00 0.00 0.00 3.01
4409 6320 6.145696 GCTTACGCTGATTTAGTATTGTAGGG 59.854 42.308 0.00 0.00 0.00 3.53
4411 6322 6.700081 TGGCTTACGCTGATTTAGTATTGTAG 59.300 38.462 0.00 0.00 36.09 2.74
4413 6324 5.424757 TGGCTTACGCTGATTTAGTATTGT 58.575 37.500 0.00 0.00 36.09 2.71
4414 6325 5.984233 TGGCTTACGCTGATTTAGTATTG 57.016 39.130 0.00 0.00 36.09 1.90
4416 6327 4.923871 CGATGGCTTACGCTGATTTAGTAT 59.076 41.667 0.00 0.00 36.09 2.12
4418 6329 3.123804 CGATGGCTTACGCTGATTTAGT 58.876 45.455 0.00 0.00 36.09 2.24
4419 6330 2.476619 CCGATGGCTTACGCTGATTTAG 59.523 50.000 0.00 0.00 36.09 1.85
4420 6331 2.159014 ACCGATGGCTTACGCTGATTTA 60.159 45.455 0.00 0.00 36.09 1.40
4421 6332 1.299541 CCGATGGCTTACGCTGATTT 58.700 50.000 0.00 0.00 36.09 2.17
4424 6335 0.818938 TAACCGATGGCTTACGCTGA 59.181 50.000 0.00 0.00 36.09 4.26
4425 6336 1.647346 TTAACCGATGGCTTACGCTG 58.353 50.000 0.00 0.00 36.09 5.18
4427 6338 3.359654 CAATTTAACCGATGGCTTACGC 58.640 45.455 0.00 0.00 0.00 4.42
4428 6339 3.623960 TCCAATTTAACCGATGGCTTACG 59.376 43.478 0.00 0.00 32.87 3.18
4429 6340 5.570234 TTCCAATTTAACCGATGGCTTAC 57.430 39.130 0.00 0.00 32.87 2.34
4430 6341 4.097286 GCTTCCAATTTAACCGATGGCTTA 59.903 41.667 0.00 0.00 32.87 3.09
4439 6366 5.659440 TGGAAGATGCTTCCAATTTAACC 57.341 39.130 22.75 0.00 44.90 2.85
4467 6394 7.171678 CGTTCAAAACTGGGCCAAATAATTTTA 59.828 33.333 8.04 0.00 0.00 1.52
4488 6416 2.724454 TGTTTTGGGTTCTTCCGTTCA 58.276 42.857 0.00 0.00 37.00 3.18
4494 6422 8.575649 TCTTATTCCTATGTTTTGGGTTCTTC 57.424 34.615 0.00 0.00 0.00 2.87
4613 6551 8.041323 TCTTCTCTTTGTGTCTACACTTTCTTT 58.959 33.333 13.95 0.00 46.55 2.52
4648 6586 4.277672 GGAAAACAAACTTGAGGTCCTACC 59.722 45.833 0.00 0.00 38.99 3.18
4660 6598 8.204160 CCTAGAAATTTTGGAGGAAAACAAACT 58.796 33.333 7.78 0.00 36.35 2.66
4665 6603 6.665992 ACCCTAGAAATTTTGGAGGAAAAC 57.334 37.500 13.00 0.00 36.35 2.43
4703 6641 4.631234 AGGAACTGGTATCCTACATTCCA 58.369 43.478 12.73 0.00 45.51 3.53
4720 7732 8.073467 TCCCATACATTTTGGAATAAAGGAAC 57.927 34.615 0.00 0.00 36.26 3.62
4763 7778 5.459505 TGGAACAAAGGAAAAAGGGTATGA 58.540 37.500 0.00 0.00 31.92 2.15
4780 7795 1.883275 CTTACGGCCATGTTTGGAACA 59.117 47.619 2.24 0.00 46.92 3.18
4781 7796 1.883926 ACTTACGGCCATGTTTGGAAC 59.116 47.619 2.24 0.00 46.92 3.62
4783 7798 2.279935 AACTTACGGCCATGTTTGGA 57.720 45.000 2.24 0.00 46.92 3.53
4784 7799 3.378911 AAAACTTACGGCCATGTTTGG 57.621 42.857 2.24 0.00 46.66 3.28
4785 7800 3.738791 GGAAAAACTTACGGCCATGTTTG 59.261 43.478 2.24 0.00 33.61 2.93
4786 7801 3.639561 AGGAAAAACTTACGGCCATGTTT 59.360 39.130 2.24 5.08 34.59 2.83
4787 7802 3.227614 AGGAAAAACTTACGGCCATGTT 58.772 40.909 2.24 0.00 0.00 2.71
4788 7803 2.817844 GAGGAAAAACTTACGGCCATGT 59.182 45.455 2.24 0.00 0.00 3.21
4789 7804 3.081804 AGAGGAAAAACTTACGGCCATG 58.918 45.455 2.24 0.00 0.00 3.66
4790 7805 3.344515 GAGAGGAAAAACTTACGGCCAT 58.655 45.455 2.24 0.00 0.00 4.40
4791 7806 2.551504 GGAGAGGAAAAACTTACGGCCA 60.552 50.000 2.24 0.00 0.00 5.36
4792 7807 2.082231 GGAGAGGAAAAACTTACGGCC 58.918 52.381 0.00 0.00 0.00 6.13
4793 7808 3.055209 AGGAGAGGAAAAACTTACGGC 57.945 47.619 0.00 0.00 0.00 5.68
4794 7809 6.387041 AAAAAGGAGAGGAAAAACTTACGG 57.613 37.500 0.00 0.00 0.00 4.02
4883 7899 0.883833 CTTGGATGCAAGTGGGTCAC 59.116 55.000 18.09 0.00 34.10 3.67
4884 7900 0.770499 TCTTGGATGCAAGTGGGTCA 59.230 50.000 24.15 3.41 34.07 4.02
4956 8024 5.762179 AAACTCACCTGACATGGAGAATA 57.238 39.130 0.00 0.00 0.00 1.75
4960 8028 4.641396 TGTTAAACTCACCTGACATGGAG 58.359 43.478 0.00 0.00 0.00 3.86
4970 8038 9.774742 GAAAAGATGTATCATGTTAAACTCACC 57.225 33.333 0.00 0.00 0.00 4.02
5055 8126 9.227490 CAACGTCAATAACAAAAGATACACAAA 57.773 29.630 0.00 0.00 0.00 2.83
5127 8198 6.831769 TGTCTTTGACGCTTCAATAAATCTC 58.168 36.000 6.45 0.00 41.50 2.75
5158 8229 1.351076 CCCTTTGGGCCTTTGACATT 58.649 50.000 4.53 0.00 35.35 2.71
5299 8387 6.583912 AGTAATCGTGTACATGCAATACAC 57.416 37.500 24.56 24.56 45.92 2.90
5300 8388 7.434013 CACTAGTAATCGTGTACATGCAATACA 59.566 37.037 10.38 9.50 0.00 2.29
5454 8542 3.511146 TGGCCAGGAGAATTCACAATTTC 59.489 43.478 0.00 0.00 0.00 2.17
5470 8623 3.119352 GGTCAAGCTTCTTATTTGGCCAG 60.119 47.826 5.11 0.00 44.10 4.85
5657 8812 6.243216 TCTACTGGTTGAAACTTACAGGTT 57.757 37.500 0.00 0.00 33.63 3.50
5768 8923 3.732721 GTGTGCAAGCAAAGTTTCATCTC 59.267 43.478 0.00 0.00 0.00 2.75
5877 9032 9.682465 CATCATGGGAAGTTGATGAGATATAAT 57.318 33.333 7.01 0.00 40.19 1.28
5889 9044 4.081406 TCTTTGACCATCATGGGAAGTTG 58.919 43.478 9.04 0.00 43.37 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.