Multiple sequence alignment - TraesCS7B01G081200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G081200 chr7B 100.000 5207 0 0 1 5207 91664860 91659654 0.000000e+00 9616
1 TraesCS7B01G081200 chr7D 92.965 3454 122 44 1800 5207 130115454 130112076 0.000000e+00 4920
2 TraesCS7B01G081200 chr7D 93.054 835 28 10 1000 1807 130116310 130115479 0.000000e+00 1194
3 TraesCS7B01G081200 chr7D 93.534 232 9 5 731 961 130116868 130116642 1.800000e-89 340
4 TraesCS7B01G081200 chr7D 82.339 419 26 10 259 637 130118669 130118259 2.340000e-83 320
5 TraesCS7B01G081200 chr7D 92.473 93 3 1 655 747 130116972 130116884 4.230000e-26 130
6 TraesCS7B01G081200 chr7A 94.042 2182 105 14 2156 4326 129261366 129259199 0.000000e+00 3286
7 TraesCS7B01G081200 chr7A 89.379 1563 82 38 655 2161 129263112 129261578 0.000000e+00 1890
8 TraesCS7B01G081200 chr7A 81.429 700 52 37 4564 5205 129259034 129258355 7.780000e-138 501
9 TraesCS7B01G081200 chr7A 86.942 291 16 5 363 637 129264709 129264425 1.820000e-79 307
10 TraesCS7B01G081200 chr7A 80.000 265 23 12 66 307 129264961 129264704 8.970000e-38 169
11 TraesCS7B01G081200 chr6D 77.342 1377 278 24 2584 3941 405484306 405482945 0.000000e+00 784
12 TraesCS7B01G081200 chr6D 86.245 538 68 5 1142 1677 405485293 405484760 3.500000e-161 579
13 TraesCS7B01G081200 chr6A 77.358 1378 276 26 2584 3941 551866152 551864791 0.000000e+00 784
14 TraesCS7B01G081200 chr6A 88.745 462 50 2 1217 1677 551867077 551866617 9.790000e-157 564
15 TraesCS7B01G081200 chr6B 77.286 1378 277 22 2584 3941 609381798 609380437 0.000000e+00 778
16 TraesCS7B01G081200 chr6B 88.528 462 51 2 1217 1677 609382694 609382234 4.550000e-155 558


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G081200 chr7B 91659654 91664860 5206 True 9616.0 9616 100.0000 1 5207 1 chr7B.!!$R1 5206
1 TraesCS7B01G081200 chr7D 130112076 130118669 6593 True 1380.8 4920 90.8730 259 5207 5 chr7D.!!$R1 4948
2 TraesCS7B01G081200 chr7A 129258355 129264961 6606 True 1230.6 3286 86.3584 66 5205 5 chr7A.!!$R1 5139
3 TraesCS7B01G081200 chr6D 405482945 405485293 2348 True 681.5 784 81.7935 1142 3941 2 chr6D.!!$R1 2799
4 TraesCS7B01G081200 chr6A 551864791 551867077 2286 True 674.0 784 83.0515 1217 3941 2 chr6A.!!$R1 2724
5 TraesCS7B01G081200 chr6B 609380437 609382694 2257 True 668.0 778 82.9070 1217 3941 2 chr6B.!!$R1 2724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.103208 CTATCCGCCATCCGCTATCC 59.897 60.000 0.00 0.00 35.03 2.59 F
53 54 0.324368 TATCCGCCATCCGCTATCCT 60.324 55.000 0.00 0.00 35.03 3.24 F
652 1999 0.368227 CTTCACTCGCTGAATGTCGC 59.632 55.000 0.00 0.00 38.26 5.19 F
1807 3601 1.067283 TCTTTGCAGCCTTCTCTCTCG 60.067 52.381 0.00 0.00 0.00 4.04 F
2808 4839 0.037326 TTTCACTGGAGCAGCTACGG 60.037 55.000 12.49 12.49 34.37 4.02 F
2904 4935 1.512926 GCATGTCGGTGTCTGAACTT 58.487 50.000 0.00 0.00 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 3520 1.137404 CGGCTGCTTTCAATTCCGG 59.863 57.895 0.0 0.0 33.85 5.14 R
1760 3521 1.137404 CCGGCTGCTTTCAATTCCG 59.863 57.895 0.0 0.0 36.90 4.30 R
2544 4572 0.176680 AGTCGATGAGATGCCACACC 59.823 55.000 0.0 0.0 0.00 4.16 R
3455 5538 1.752833 GGGCTCCCCAGTAATACGG 59.247 63.158 0.0 0.0 44.65 4.02 R
3958 6041 0.036164 CGGATCACCACCAAACTCCA 59.964 55.000 0.0 0.0 35.59 3.86 R
4463 6561 0.043940 ATTCCTCTGTCTGGGGCTCT 59.956 55.000 0.0 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.164269 GGCAGGCAGGCTAGGCTA 61.164 66.667 19.78 0.00 43.24 3.93
36 37 2.524204 GGCAGGCAGGCTAGGCTAT 61.524 63.158 19.78 5.25 43.24 2.97
37 38 1.003959 GCAGGCAGGCTAGGCTATC 60.004 63.158 19.78 13.57 43.24 2.08
38 39 1.676384 CAGGCAGGCTAGGCTATCC 59.324 63.158 19.78 21.13 43.24 2.59
39 40 1.910772 AGGCAGGCTAGGCTATCCG 60.911 63.158 19.78 7.77 43.28 4.18
40 41 2.047750 GCAGGCTAGGCTATCCGC 60.048 66.667 19.78 14.31 37.47 5.54
49 50 2.970639 GCTATCCGCCATCCGCTA 59.029 61.111 0.00 0.00 35.03 4.26
50 51 1.517832 GCTATCCGCCATCCGCTAT 59.482 57.895 0.00 0.00 35.03 2.97
51 52 0.528684 GCTATCCGCCATCCGCTATC 60.529 60.000 0.00 0.00 35.03 2.08
52 53 0.103208 CTATCCGCCATCCGCTATCC 59.897 60.000 0.00 0.00 35.03 2.59
53 54 0.324368 TATCCGCCATCCGCTATCCT 60.324 55.000 0.00 0.00 35.03 3.24
54 55 1.892819 ATCCGCCATCCGCTATCCTG 61.893 60.000 0.00 0.00 35.03 3.86
55 56 2.574018 CCGCCATCCGCTATCCTGA 61.574 63.158 0.00 0.00 35.03 3.86
56 57 1.080230 CGCCATCCGCTATCCTGAG 60.080 63.158 0.00 0.00 34.21 3.35
57 58 1.294780 GCCATCCGCTATCCTGAGG 59.705 63.158 0.00 0.00 0.00 3.86
58 59 1.188219 GCCATCCGCTATCCTGAGGA 61.188 60.000 2.43 2.43 40.05 3.71
59 60 1.342074 CCATCCGCTATCCTGAGGAA 58.658 55.000 4.76 0.00 39.26 3.36
60 61 1.274728 CCATCCGCTATCCTGAGGAAG 59.725 57.143 4.76 5.81 39.26 3.46
61 62 0.972883 ATCCGCTATCCTGAGGAAGC 59.027 55.000 19.26 19.26 39.26 3.86
62 63 4.643733 CGCTATCCTGAGGAAGCG 57.356 61.111 29.26 29.26 44.98 4.68
64 65 3.883997 GCTATCCTGAGGAAGCGAG 57.116 57.895 4.76 1.92 34.34 5.03
81 82 2.892425 GGTCTGGAATCAGCGCCG 60.892 66.667 2.29 0.00 40.69 6.46
138 148 4.540153 GCCACGGCATAGTCACAT 57.460 55.556 2.36 0.00 41.49 3.21
139 149 3.678921 GCCACGGCATAGTCACATA 57.321 52.632 2.36 0.00 41.49 2.29
140 150 1.502231 GCCACGGCATAGTCACATAG 58.498 55.000 2.36 0.00 41.49 2.23
141 151 1.502231 CCACGGCATAGTCACATAGC 58.498 55.000 0.00 0.00 0.00 2.97
142 152 1.069204 CCACGGCATAGTCACATAGCT 59.931 52.381 0.00 0.00 0.00 3.32
147 157 1.691127 CATAGTCACATAGCTCGCGG 58.309 55.000 6.13 0.00 0.00 6.46
195 205 1.678635 CGCAGCCCATGGAAGGAAA 60.679 57.895 15.22 0.00 0.00 3.13
197 207 1.325476 GCAGCCCATGGAAGGAAAGG 61.325 60.000 15.22 0.00 0.00 3.11
200 210 1.032114 GCCCATGGAAGGAAAGGTCG 61.032 60.000 15.22 0.00 0.00 4.79
343 367 2.187946 GTCCAGGTCCAGCATCCG 59.812 66.667 0.00 0.00 0.00 4.18
511 568 2.451693 CGTCCAGCGGATTTTCGAA 58.548 52.632 0.00 0.00 36.85 3.71
538 595 2.282887 GCAGGCCGGGAAAAGGAA 60.283 61.111 2.18 0.00 0.00 3.36
542 599 2.646175 GGCCGGGAAAAGGAAAGGC 61.646 63.158 2.18 0.00 43.47 4.35
547 604 1.047801 GGGAAAAGGAAAGGCAAGCA 58.952 50.000 0.00 0.00 0.00 3.91
548 605 1.270305 GGGAAAAGGAAAGGCAAGCAC 60.270 52.381 0.00 0.00 0.00 4.40
561 629 1.003051 AAGCACCCCCTCCGTAGAT 59.997 57.895 0.00 0.00 0.00 1.98
568 636 1.365633 CCCTCCGTAGATCAGCTGC 59.634 63.158 9.47 0.00 0.00 5.25
577 645 2.522836 AGATCAGCTGCGGAATACTG 57.477 50.000 9.47 0.00 0.00 2.74
578 646 1.759445 AGATCAGCTGCGGAATACTGT 59.241 47.619 9.47 0.00 0.00 3.55
579 647 2.959030 AGATCAGCTGCGGAATACTGTA 59.041 45.455 9.47 0.00 0.00 2.74
580 648 3.576118 AGATCAGCTGCGGAATACTGTAT 59.424 43.478 9.47 0.00 0.00 2.29
581 649 3.819564 TCAGCTGCGGAATACTGTATT 57.180 42.857 12.62 12.62 0.00 1.89
582 650 4.137116 TCAGCTGCGGAATACTGTATTT 57.863 40.909 9.47 0.00 0.00 1.40
583 651 4.119862 TCAGCTGCGGAATACTGTATTTC 58.880 43.478 9.47 11.13 0.00 2.17
584 652 4.122776 CAGCTGCGGAATACTGTATTTCT 58.877 43.478 13.84 3.54 0.00 2.52
585 653 4.210120 CAGCTGCGGAATACTGTATTTCTC 59.790 45.833 13.84 8.01 0.00 2.87
586 654 4.119862 GCTGCGGAATACTGTATTTCTCA 58.880 43.478 13.84 11.90 0.00 3.27
587 655 4.570772 GCTGCGGAATACTGTATTTCTCAA 59.429 41.667 13.84 0.90 0.00 3.02
588 656 5.277058 GCTGCGGAATACTGTATTTCTCAAG 60.277 44.000 13.84 10.03 0.00 3.02
589 657 5.116180 TGCGGAATACTGTATTTCTCAAGG 58.884 41.667 13.84 1.30 0.00 3.61
595 663 7.283354 GGAATACTGTATTTCTCAAGGGGAAAG 59.717 40.741 13.84 0.00 36.35 2.62
650 1997 4.098055 TCTACTTCACTCGCTGAATGTC 57.902 45.455 0.00 0.00 38.26 3.06
651 1998 1.702886 ACTTCACTCGCTGAATGTCG 58.297 50.000 0.00 0.00 38.26 4.35
652 1999 0.368227 CTTCACTCGCTGAATGTCGC 59.632 55.000 0.00 0.00 38.26 5.19
661 2047 1.073964 CTGAATGTCGCTGTGTGAGG 58.926 55.000 0.00 0.00 0.00 3.86
694 2080 4.529769 TGAGAATATATGCCACTCTCCCTG 59.470 45.833 8.30 0.00 33.12 4.45
695 2081 4.497516 AGAATATATGCCACTCTCCCTGT 58.502 43.478 0.00 0.00 0.00 4.00
696 2082 4.530161 AGAATATATGCCACTCTCCCTGTC 59.470 45.833 0.00 0.00 0.00 3.51
697 2083 2.485966 ATATGCCACTCTCCCTGTCT 57.514 50.000 0.00 0.00 0.00 3.41
868 2306 8.414629 ACTCTGCTGGAAGAGAAAAATAAAAT 57.585 30.769 12.17 0.00 45.59 1.82
962 2400 2.028658 TCCAGTCTCACATGAGCACTTC 60.029 50.000 0.00 0.00 41.80 3.01
996 2441 4.217266 AACCCCCACCTCCACCCT 62.217 66.667 0.00 0.00 0.00 4.34
1275 3030 2.182030 CTCGAGTTCCTCACCGCC 59.818 66.667 3.62 0.00 0.00 6.13
1495 3250 2.113139 CCAACGTCAAGCCCTGGT 59.887 61.111 0.00 0.00 0.00 4.00
1750 3511 2.994990 CCGTTGACTTCGGGTTGAA 58.005 52.632 0.00 0.00 43.68 2.69
1752 3513 1.671845 CCGTTGACTTCGGGTTGAAAA 59.328 47.619 0.00 0.00 43.68 2.29
1773 3534 1.804151 CTTCGACCGGAATTGAAAGCA 59.196 47.619 9.46 0.00 33.26 3.91
1807 3601 1.067283 TCTTTGCAGCCTTCTCTCTCG 60.067 52.381 0.00 0.00 0.00 4.04
1844 3638 1.343142 TCTCAACCTATGCACGTGTGT 59.657 47.619 18.38 8.70 0.00 3.72
2005 3805 7.116233 GCTTACATTTGTGGTTTATTTCACTGG 59.884 37.037 0.00 0.00 35.15 4.00
2027 3827 4.508861 GGCTCGAGGCGTTAAAACATAATA 59.491 41.667 24.18 0.00 42.94 0.98
2028 3828 5.178809 GGCTCGAGGCGTTAAAACATAATAT 59.821 40.000 24.18 0.00 42.94 1.28
2029 3829 6.293244 GGCTCGAGGCGTTAAAACATAATATT 60.293 38.462 24.18 0.00 42.94 1.28
2030 3830 6.573725 GCTCGAGGCGTTAAAACATAATATTG 59.426 38.462 15.58 0.00 0.00 1.90
2059 3859 1.342082 CGTTAGTGCCCGTTGACGAG 61.342 60.000 4.91 0.00 43.02 4.18
2140 3944 4.763279 ACTTTTAATGGGTCCTGGTTAACG 59.237 41.667 0.00 0.00 0.00 3.18
2162 3967 4.882427 CGAACTCCCACTCTCTGTAATAGA 59.118 45.833 0.00 0.00 0.00 1.98
2236 4262 7.487822 TCCAAATATGTAAAGCCCATCAAAA 57.512 32.000 0.00 0.00 0.00 2.44
2317 4343 7.092716 GTCACAGAAAGTATGCCATTTGATTT 58.907 34.615 0.00 0.00 0.00 2.17
2395 4422 6.681777 ACTCAAATTCATGGTCAAAGTTAGC 58.318 36.000 0.00 0.00 0.00 3.09
2438 4465 1.688735 GCATATTTGGAAAGAGGGGGC 59.311 52.381 0.00 0.00 0.00 5.80
2516 4543 3.698029 TGTGCTTGTTTCTCTTGCTTC 57.302 42.857 0.00 0.00 0.00 3.86
2534 4561 4.394920 TGCTTCGCTTCAGTTTATAAAGGG 59.605 41.667 0.00 0.00 35.09 3.95
2544 4572 3.199289 AGTTTATAAAGGGGTGGAGTCGG 59.801 47.826 0.00 0.00 0.00 4.79
2634 4665 3.051803 AGGACTATGTGGATCAGGAGGAA 60.052 47.826 0.00 0.00 0.00 3.36
2794 4825 2.540769 CGTGTGAACCACCATGTTTCAC 60.541 50.000 11.12 11.12 41.26 3.18
2808 4839 0.037326 TTTCACTGGAGCAGCTACGG 60.037 55.000 12.49 12.49 34.37 4.02
2904 4935 1.512926 GCATGTCGGTGTCTGAACTT 58.487 50.000 0.00 0.00 0.00 2.66
2994 5025 2.420687 CCTTCCAGCAATCTACCCAGTC 60.421 54.545 0.00 0.00 0.00 3.51
3569 5652 6.016860 TCACTGATAAGGCATTTGCATACATC 60.017 38.462 4.74 5.10 44.36 3.06
3941 6024 5.635700 GCCGCTATTGGTGAAAATTTTGTAA 59.364 36.000 8.47 0.00 0.00 2.41
3978 6061 0.676782 GGAGTTTGGTGGTGATCCGG 60.677 60.000 0.00 0.00 36.30 5.14
4014 6097 2.642171 TCCTACTGGACCTGGTCATT 57.358 50.000 26.94 13.20 37.46 2.57
4036 6119 5.227569 TCTTGTTCTGTTATTCCTGAGCA 57.772 39.130 0.00 0.00 0.00 4.26
4053 6136 1.160137 GCAAGAGCTGGTCGATTTGT 58.840 50.000 0.00 0.00 37.91 2.83
4124 6207 4.280677 TGGAGGGTTTTCATGATTTCACAC 59.719 41.667 0.00 0.00 0.00 3.82
4227 6311 0.313043 GATGATGAGGCGGCATTTGG 59.687 55.000 13.08 0.00 0.00 3.28
4349 6443 3.070076 TGCTGATCCGAGCATTGAC 57.930 52.632 3.70 0.00 44.16 3.18
4357 6451 0.456221 CCGAGCATTGACGAGTAGGT 59.544 55.000 0.00 0.00 0.00 3.08
4364 6458 0.601558 TTGACGAGTAGGTGCTGGTC 59.398 55.000 3.76 3.76 42.20 4.02
4407 6502 6.071728 AGCATGTTTTAGATGGTTCTTTCCTG 60.072 38.462 0.00 0.00 33.17 3.86
4418 6513 3.495001 GGTTCTTTCCTGTCAAGACTTCG 59.505 47.826 1.53 0.00 29.70 3.79
4450 6548 1.289530 TCCTTGGGGAGGTTGTGTTTT 59.710 47.619 0.00 0.00 46.39 2.43
4461 6559 3.123050 GGTTGTGTTTTGTTCATCTGCC 58.877 45.455 0.00 0.00 0.00 4.85
4462 6560 3.123050 GTTGTGTTTTGTTCATCTGCCC 58.877 45.455 0.00 0.00 0.00 5.36
4463 6561 2.382882 TGTGTTTTGTTCATCTGCCCA 58.617 42.857 0.00 0.00 0.00 5.36
4464 6562 2.361757 TGTGTTTTGTTCATCTGCCCAG 59.638 45.455 0.00 0.00 0.00 4.45
4465 6563 2.622942 GTGTTTTGTTCATCTGCCCAGA 59.377 45.455 0.00 0.00 42.37 3.86
4466 6564 2.886523 TGTTTTGTTCATCTGCCCAGAG 59.113 45.455 4.16 0.00 41.33 3.35
4467 6565 1.538047 TTTGTTCATCTGCCCAGAGC 58.462 50.000 4.16 0.00 41.33 4.09
4468 6566 0.322816 TTGTTCATCTGCCCAGAGCC 60.323 55.000 4.16 0.00 41.33 4.70
4502 6600 5.127682 GGAATTCCTATGCCAGTGTGAATTT 59.872 40.000 17.73 0.00 33.81 1.82
4506 6604 1.340088 ATGCCAGTGTGAATTTGCCA 58.660 45.000 0.00 0.00 0.00 4.92
4526 6624 5.163088 TGCCATCTCCTGTCATCTACTACTA 60.163 44.000 0.00 0.00 0.00 1.82
4542 6640 7.499292 TCTACTACTACTAGTGCTGTAGAAGG 58.501 42.308 25.48 17.99 39.61 3.46
4588 6691 3.504906 GCCTCCCCTTTTGTTTGTACTAC 59.495 47.826 0.00 0.00 0.00 2.73
4609 6712 2.270434 TTTGTAGCCTCCCTCCAGAT 57.730 50.000 0.00 0.00 0.00 2.90
4629 6739 5.977129 CAGATGTTGTTGTTTTTGTAGACCC 59.023 40.000 0.00 0.00 0.00 4.46
4630 6740 5.891551 AGATGTTGTTGTTTTTGTAGACCCT 59.108 36.000 0.00 0.00 0.00 4.34
4631 6741 5.986501 TGTTGTTGTTTTTGTAGACCCTT 57.013 34.783 0.00 0.00 0.00 3.95
4632 6742 5.715070 TGTTGTTGTTTTTGTAGACCCTTG 58.285 37.500 0.00 0.00 0.00 3.61
4633 6743 5.244178 TGTTGTTGTTTTTGTAGACCCTTGT 59.756 36.000 0.00 0.00 0.00 3.16
4634 6744 6.433404 TGTTGTTGTTTTTGTAGACCCTTGTA 59.567 34.615 0.00 0.00 0.00 2.41
4635 6745 6.687081 TGTTGTTTTTGTAGACCCTTGTAG 57.313 37.500 0.00 0.00 0.00 2.74
4636 6746 5.591067 TGTTGTTTTTGTAGACCCTTGTAGG 59.409 40.000 0.00 0.00 34.30 3.18
4643 6753 3.453353 TGTAGACCCTTGTAGGCCATTAC 59.547 47.826 5.01 0.00 32.73 1.89
4651 6761 6.012771 ACCCTTGTAGGCCATTACTATTATCC 60.013 42.308 5.01 0.00 32.73 2.59
4672 6785 4.349636 TCCCTTGTTACATTTCTGGTCTCA 59.650 41.667 0.00 0.00 0.00 3.27
4680 6793 7.606456 TGTTACATTTCTGGTCTCACCTTTATC 59.394 37.037 0.00 0.00 39.58 1.75
4693 6806 5.181009 TCACCTTTATCATGCTGAGAACTG 58.819 41.667 0.00 0.00 25.96 3.16
4750 6870 6.037786 TCTTTCATCCTACTACCACAACTG 57.962 41.667 0.00 0.00 0.00 3.16
4751 6871 5.778241 TCTTTCATCCTACTACCACAACTGA 59.222 40.000 0.00 0.00 0.00 3.41
4775 6895 0.675083 TTGCTTGCCAACTGTCATGG 59.325 50.000 0.00 0.00 41.08 3.66
4780 6900 3.443045 CCAACTGTCATGGCCGCC 61.443 66.667 1.04 1.04 0.00 6.13
4781 6901 3.443045 CAACTGTCATGGCCGCCC 61.443 66.667 7.03 0.00 0.00 6.13
4782 6902 4.740822 AACTGTCATGGCCGCCCC 62.741 66.667 7.03 0.00 0.00 5.80
4786 6906 4.839706 GTCATGGCCGCCCCCATT 62.840 66.667 7.03 0.00 42.92 3.16
4787 6907 4.837797 TCATGGCCGCCCCCATTG 62.838 66.667 7.03 0.00 42.92 2.82
4789 6909 4.397010 ATGGCCGCCCCCATTGTT 62.397 61.111 7.03 0.00 42.92 2.83
4816 6936 5.928839 CACTAACATGCTTCTTGTGAGTACT 59.071 40.000 0.00 0.00 36.78 2.73
4836 6956 1.879380 TCCTACAACAACAGCATGCAC 59.121 47.619 21.98 0.00 42.53 4.57
4938 7085 9.473007 TGATTTGATCTTTTACATACAATCCCA 57.527 29.630 0.00 0.00 0.00 4.37
4958 7105 5.067674 TCCCATGTTAATTAGCTTCACATGC 59.932 40.000 16.65 0.00 43.50 4.06
4963 7110 2.814805 ATTAGCTTCACATGCCCTGT 57.185 45.000 0.00 0.00 39.20 4.00
5177 7352 3.421888 GCATCACTTGTTGTTTACTTGCG 59.578 43.478 0.00 0.00 0.00 4.85
5199 7374 4.037923 CGGATTTGCCATATATTATGGGCC 59.962 45.833 13.89 0.00 45.83 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.871910 CTAGCCTGCCTGCCTGCC 62.872 72.222 0.00 0.00 0.00 4.85
15 16 4.871910 CCTAGCCTGCCTGCCTGC 62.872 72.222 0.00 0.00 0.00 4.85
16 17 4.871910 GCCTAGCCTGCCTGCCTG 62.872 72.222 0.00 0.00 0.00 4.85
17 18 2.979990 ATAGCCTAGCCTGCCTGCCT 62.980 60.000 0.00 0.00 0.00 4.75
19 20 1.003959 GATAGCCTAGCCTGCCTGC 60.004 63.158 0.00 0.00 0.00 4.85
20 21 1.676384 GGATAGCCTAGCCTGCCTG 59.324 63.158 0.00 0.00 0.00 4.85
21 22 1.910772 CGGATAGCCTAGCCTGCCT 60.911 63.158 4.25 0.00 30.33 4.75
22 23 2.659610 CGGATAGCCTAGCCTGCC 59.340 66.667 4.25 0.00 30.33 4.85
23 24 2.047750 GCGGATAGCCTAGCCTGC 60.048 66.667 4.25 5.84 40.81 4.85
39 40 1.188219 TCCTCAGGATAGCGGATGGC 61.188 60.000 0.00 0.00 44.05 4.40
40 41 1.274728 CTTCCTCAGGATAGCGGATGG 59.725 57.143 0.00 0.00 0.00 3.51
41 42 1.337635 GCTTCCTCAGGATAGCGGATG 60.338 57.143 10.88 0.00 30.79 3.51
42 43 0.972883 GCTTCCTCAGGATAGCGGAT 59.027 55.000 10.88 0.00 30.79 4.18
43 44 1.456196 CGCTTCCTCAGGATAGCGGA 61.456 60.000 28.66 1.95 45.69 5.54
44 45 1.006805 CGCTTCCTCAGGATAGCGG 60.007 63.158 28.66 17.19 45.69 5.52
45 46 4.643733 CGCTTCCTCAGGATAGCG 57.356 61.111 25.77 25.77 44.98 4.26
46 47 0.316841 CCTCGCTTCCTCAGGATAGC 59.683 60.000 14.65 14.65 34.73 2.97
47 48 1.611491 GACCTCGCTTCCTCAGGATAG 59.389 57.143 0.00 0.00 0.00 2.08
48 49 1.215673 AGACCTCGCTTCCTCAGGATA 59.784 52.381 0.00 0.00 0.00 2.59
49 50 0.032615 AGACCTCGCTTCCTCAGGAT 60.033 55.000 0.00 0.00 0.00 3.24
50 51 0.967887 CAGACCTCGCTTCCTCAGGA 60.968 60.000 0.00 0.00 0.00 3.86
51 52 1.515020 CAGACCTCGCTTCCTCAGG 59.485 63.158 0.00 0.00 0.00 3.86
52 53 0.967887 TCCAGACCTCGCTTCCTCAG 60.968 60.000 0.00 0.00 0.00 3.35
53 54 0.541998 TTCCAGACCTCGCTTCCTCA 60.542 55.000 0.00 0.00 0.00 3.86
54 55 0.827368 ATTCCAGACCTCGCTTCCTC 59.173 55.000 0.00 0.00 0.00 3.71
55 56 0.827368 GATTCCAGACCTCGCTTCCT 59.173 55.000 0.00 0.00 0.00 3.36
56 57 0.537188 TGATTCCAGACCTCGCTTCC 59.463 55.000 0.00 0.00 0.00 3.46
57 58 1.933247 CTGATTCCAGACCTCGCTTC 58.067 55.000 0.00 0.00 43.02 3.86
58 59 0.107945 GCTGATTCCAGACCTCGCTT 60.108 55.000 0.00 0.00 43.02 4.68
59 60 1.519719 GCTGATTCCAGACCTCGCT 59.480 57.895 0.00 0.00 43.02 4.93
60 61 1.880340 CGCTGATTCCAGACCTCGC 60.880 63.158 0.00 0.00 43.02 5.03
61 62 1.880340 GCGCTGATTCCAGACCTCG 60.880 63.158 0.00 0.00 43.02 4.63
62 63 1.522580 GGCGCTGATTCCAGACCTC 60.523 63.158 7.64 0.00 43.02 3.85
63 64 2.586792 GGCGCTGATTCCAGACCT 59.413 61.111 7.64 0.00 43.02 3.85
64 65 2.892425 CGGCGCTGATTCCAGACC 60.892 66.667 11.90 0.00 43.02 3.85
81 82 4.570663 CGGTGCGAGATCGGGGAC 62.571 72.222 4.18 2.81 40.23 4.46
124 134 1.001268 CGAGCTATGTGACTATGCCGT 60.001 52.381 0.00 0.00 0.00 5.68
126 136 1.423395 GCGAGCTATGTGACTATGCC 58.577 55.000 0.00 0.00 0.00 4.40
158 168 3.993234 CGCGATCATGGCTGCGTC 61.993 66.667 0.00 1.98 45.12 5.19
195 205 3.897122 TTGCAAAGGCCCCGACCT 61.897 61.111 0.00 0.00 43.91 3.85
197 207 4.038080 CGTTGCAAAGGCCCCGAC 62.038 66.667 0.00 0.00 40.13 4.79
200 210 4.986708 TCCCGTTGCAAAGGCCCC 62.987 66.667 24.23 0.00 40.13 5.80
251 261 2.740055 CTCGTGCCTGACTGTGCC 60.740 66.667 0.00 0.00 0.00 5.01
252 262 3.418068 GCTCGTGCCTGACTGTGC 61.418 66.667 0.00 0.00 0.00 4.57
254 264 1.179174 TACTGCTCGTGCCTGACTGT 61.179 55.000 7.05 0.00 38.71 3.55
255 265 0.734253 GTACTGCTCGTGCCTGACTG 60.734 60.000 7.05 0.00 38.71 3.51
256 266 1.587054 GTACTGCTCGTGCCTGACT 59.413 57.895 7.05 0.00 38.71 3.41
257 267 1.446272 GGTACTGCTCGTGCCTGAC 60.446 63.158 7.05 1.92 44.19 3.51
266 290 1.741401 TGCATGCGTGGTACTGCTC 60.741 57.895 14.09 0.00 35.66 4.26
325 349 2.659063 CGGATGCTGGACCTGGACA 61.659 63.158 0.00 0.00 0.00 4.02
500 557 1.463444 GTGTCTGGGTTCGAAAATCCG 59.537 52.381 0.00 0.01 38.64 4.18
505 562 0.878523 CTGCGTGTCTGGGTTCGAAA 60.879 55.000 0.00 0.00 0.00 3.46
509 566 3.050275 GCCTGCGTGTCTGGGTTC 61.050 66.667 0.00 0.00 34.64 3.62
538 595 3.984732 GGAGGGGGTGCTTGCCTT 61.985 66.667 0.00 0.00 0.00 4.35
542 599 1.338136 ATCTACGGAGGGGGTGCTTG 61.338 60.000 0.00 0.00 0.00 4.01
547 604 1.457831 GCTGATCTACGGAGGGGGT 60.458 63.158 0.00 0.00 0.00 4.95
548 605 1.152440 AGCTGATCTACGGAGGGGG 60.152 63.158 0.00 0.00 0.00 5.40
561 629 3.819564 AATACAGTATTCCGCAGCTGA 57.180 42.857 20.43 0.00 33.57 4.26
568 636 5.057149 CCCCTTGAGAAATACAGTATTCCG 58.943 45.833 6.26 0.00 0.00 4.30
575 643 5.179452 TCCTTTCCCCTTGAGAAATACAG 57.821 43.478 0.00 0.00 33.01 2.74
577 645 6.911250 TTTTCCTTTCCCCTTGAGAAATAC 57.089 37.500 0.00 0.00 33.01 1.89
578 646 7.512402 ACATTTTTCCTTTCCCCTTGAGAAATA 59.488 33.333 0.00 0.00 33.01 1.40
579 647 6.329986 ACATTTTTCCTTTCCCCTTGAGAAAT 59.670 34.615 0.00 0.00 33.01 2.17
580 648 5.665360 ACATTTTTCCTTTCCCCTTGAGAAA 59.335 36.000 0.00 0.00 0.00 2.52
581 649 5.070313 CACATTTTTCCTTTCCCCTTGAGAA 59.930 40.000 0.00 0.00 0.00 2.87
582 650 4.588528 CACATTTTTCCTTTCCCCTTGAGA 59.411 41.667 0.00 0.00 0.00 3.27
583 651 4.262592 CCACATTTTTCCTTTCCCCTTGAG 60.263 45.833 0.00 0.00 0.00 3.02
584 652 3.645687 CCACATTTTTCCTTTCCCCTTGA 59.354 43.478 0.00 0.00 0.00 3.02
585 653 3.645687 TCCACATTTTTCCTTTCCCCTTG 59.354 43.478 0.00 0.00 0.00 3.61
586 654 3.935172 TCCACATTTTTCCTTTCCCCTT 58.065 40.909 0.00 0.00 0.00 3.95
587 655 3.628832 TCCACATTTTTCCTTTCCCCT 57.371 42.857 0.00 0.00 0.00 4.79
588 656 4.532126 AGATTCCACATTTTTCCTTTCCCC 59.468 41.667 0.00 0.00 0.00 4.81
589 657 5.745312 AGATTCCACATTTTTCCTTTCCC 57.255 39.130 0.00 0.00 0.00 3.97
595 663 8.306761 ACAGTCAATTAGATTCCACATTTTTCC 58.693 33.333 0.00 0.00 0.00 3.13
650 1997 1.008538 GCCAAAACCTCACACAGCG 60.009 57.895 0.00 0.00 0.00 5.18
651 1998 0.031178 CTGCCAAAACCTCACACAGC 59.969 55.000 0.00 0.00 0.00 4.40
652 1999 1.066002 CACTGCCAAAACCTCACACAG 59.934 52.381 0.00 0.00 0.00 3.66
694 2080 4.460505 CCGAAAATTAACGTTGGACAGAC 58.539 43.478 11.99 0.00 0.00 3.51
695 2081 3.499157 CCCGAAAATTAACGTTGGACAGA 59.501 43.478 11.99 0.00 0.00 3.41
696 2082 3.499157 TCCCGAAAATTAACGTTGGACAG 59.501 43.478 11.99 0.00 0.00 3.51
697 2083 3.474600 TCCCGAAAATTAACGTTGGACA 58.525 40.909 11.99 0.00 0.00 4.02
770 2194 7.384477 ACCTTTGTGTACTTTCTATGTACCTC 58.616 38.462 0.00 0.00 39.42 3.85
832 2261 5.361285 TCTTCCAGCAGAGTAGAGTATTTCC 59.639 44.000 0.00 0.00 0.00 3.13
868 2306 6.127952 CGGAGGAACGGAACCATTTTATTTTA 60.128 38.462 0.00 0.00 0.00 1.52
873 2311 2.038820 ACGGAGGAACGGAACCATTTTA 59.961 45.455 0.00 0.00 38.39 1.52
875 2313 0.399075 ACGGAGGAACGGAACCATTT 59.601 50.000 0.00 0.00 38.39 2.32
876 2314 0.036671 GACGGAGGAACGGAACCATT 60.037 55.000 0.00 0.00 38.39 3.16
877 2315 1.595357 GACGGAGGAACGGAACCAT 59.405 57.895 0.00 0.00 38.39 3.55
878 2316 2.576832 GGACGGAGGAACGGAACCA 61.577 63.158 0.00 0.00 38.39 3.67
879 2317 2.263852 GGACGGAGGAACGGAACC 59.736 66.667 0.00 0.00 38.39 3.62
880 2318 2.263852 GGGACGGAGGAACGGAAC 59.736 66.667 0.00 0.00 38.39 3.62
881 2319 2.999063 GGGGACGGAGGAACGGAA 60.999 66.667 0.00 0.00 38.39 4.30
996 2441 1.229690 TGGTTGGGGGATCGGAGAA 60.230 57.895 0.00 0.00 43.58 2.87
1236 2991 2.375766 GCTCTCCAGCACGTTGTCG 61.376 63.158 0.00 0.00 46.06 4.35
1750 3511 3.304458 GCTTTCAATTCCGGTCGAAGTTT 60.304 43.478 0.00 0.00 32.78 2.66
1752 3513 1.804748 GCTTTCAATTCCGGTCGAAGT 59.195 47.619 0.00 0.00 32.78 3.01
1755 3516 1.438651 CTGCTTTCAATTCCGGTCGA 58.561 50.000 0.00 0.00 0.00 4.20
1759 3520 1.137404 CGGCTGCTTTCAATTCCGG 59.863 57.895 0.00 0.00 33.85 5.14
1760 3521 1.137404 CCGGCTGCTTTCAATTCCG 59.863 57.895 0.00 0.00 36.90 4.30
1773 3534 2.092323 GCAAAGATTTAACCTCCGGCT 58.908 47.619 0.00 0.00 0.00 5.52
1784 3546 4.009002 GAGAGAGAAGGCTGCAAAGATTT 58.991 43.478 0.50 0.00 0.00 2.17
1807 3601 3.427598 GAACTAGAGGACCCCGCGC 62.428 68.421 0.00 0.00 0.00 6.86
1812 3606 2.822697 AGGTTGAGAACTAGAGGACCC 58.177 52.381 0.00 0.00 0.00 4.46
1844 3638 3.812609 TGCGACAACAAGCTAAAGAATGA 59.187 39.130 0.00 0.00 0.00 2.57
2005 3805 4.531659 ATTATGTTTTAACGCCTCGAGC 57.468 40.909 6.99 1.53 38.52 5.03
2027 3827 4.142249 GGGCACTAACGAAATAAAGCCAAT 60.142 41.667 0.00 0.00 42.49 3.16
2028 3828 3.191791 GGGCACTAACGAAATAAAGCCAA 59.808 43.478 0.00 0.00 42.49 4.52
2029 3829 2.750712 GGGCACTAACGAAATAAAGCCA 59.249 45.455 0.00 0.00 42.49 4.75
2030 3830 2.223180 CGGGCACTAACGAAATAAAGCC 60.223 50.000 0.00 0.00 40.08 4.35
2059 3859 6.192044 TCCCTACCCAGGATTTAATTTTCAC 58.808 40.000 0.00 0.00 45.91 3.18
2140 3944 5.652891 TGTCTATTACAGAGAGTGGGAGTTC 59.347 44.000 0.00 0.00 32.51 3.01
2162 3967 4.799564 ATGCAACGGAATACCAAATTGT 57.200 36.364 0.00 0.00 35.59 2.71
2243 4269 7.776030 TGGTCAAATAAGTGGACAAAAGTTAGA 59.224 33.333 0.00 0.00 33.26 2.10
2284 4310 6.765989 TGGCATACTTTCTGTGACATATAACC 59.234 38.462 0.00 0.00 0.00 2.85
2285 4311 7.786178 TGGCATACTTTCTGTGACATATAAC 57.214 36.000 0.00 0.00 0.00 1.89
2286 4312 8.978874 AATGGCATACTTTCTGTGACATATAA 57.021 30.769 0.00 0.00 40.57 0.98
2287 4313 8.839343 CAAATGGCATACTTTCTGTGACATATA 58.161 33.333 0.00 0.00 40.57 0.86
2395 4422 1.273327 GGCACCCATCAAACTTTGAGG 59.727 52.381 9.97 9.41 43.98 3.86
2516 4543 3.377172 CCACCCCTTTATAAACTGAAGCG 59.623 47.826 0.00 0.00 0.00 4.68
2534 4561 4.699522 GCCACACCCGACTCCACC 62.700 72.222 0.00 0.00 0.00 4.61
2544 4572 0.176680 AGTCGATGAGATGCCACACC 59.823 55.000 0.00 0.00 0.00 4.16
2634 4665 1.830477 GAGATCCAGTCCACTGCTTCT 59.170 52.381 0.76 5.46 42.47 2.85
2794 4825 4.135153 ACGCCGTAGCTGCTCCAG 62.135 66.667 4.91 0.00 36.60 3.86
2994 5025 2.472029 AGGGAGGTGAGATTACCACAG 58.528 52.381 0.00 0.00 43.37 3.66
3455 5538 1.752833 GGGCTCCCCAGTAATACGG 59.247 63.158 0.00 0.00 44.65 4.02
3569 5652 5.446143 TTATTAGTTTGCCATATTGCCCG 57.554 39.130 0.00 0.00 0.00 6.13
3941 6024 5.927281 ACTCCAGCAAAATAAGCAATGAT 57.073 34.783 0.00 0.00 0.00 2.45
3957 6040 1.826385 GGATCACCACCAAACTCCAG 58.174 55.000 0.00 0.00 35.97 3.86
3958 6041 0.036164 CGGATCACCACCAAACTCCA 59.964 55.000 0.00 0.00 35.59 3.86
3978 6061 5.178438 CAGTAGGACAAGAAAAGTTCTGCTC 59.822 44.000 0.00 0.00 35.67 4.26
4014 6097 5.227569 TGCTCAGGAATAACAGAACAAGA 57.772 39.130 0.00 0.00 0.00 3.02
4036 6119 1.072331 ACCACAAATCGACCAGCTCTT 59.928 47.619 0.00 0.00 0.00 2.85
4053 6136 5.530915 CCAGTTAACTTGATCAAGAACACCA 59.469 40.000 36.15 14.31 40.79 4.17
4124 6207 8.451687 ACAATGAATGACACATAATTGTTTCG 57.548 30.769 14.34 0.00 35.69 3.46
4227 6311 1.559831 GTGCCAAACTGCTTCAACAC 58.440 50.000 0.00 0.00 0.00 3.32
4364 6458 0.108615 CTAACTGGACTGGGAGTGCG 60.109 60.000 0.00 0.00 39.63 5.34
4371 6465 5.245531 TCTAAAACATGCTAACTGGACTGG 58.754 41.667 0.00 0.00 0.00 4.00
4372 6466 6.183360 CCATCTAAAACATGCTAACTGGACTG 60.183 42.308 0.00 0.00 0.00 3.51
4407 6502 2.076863 CCCATGGTTCGAAGTCTTGAC 58.923 52.381 11.73 0.00 0.00 3.18
4418 6513 1.266178 CCCAAGGAAACCCATGGTTC 58.734 55.000 11.73 8.77 46.20 3.62
4450 6548 1.300963 GGCTCTGGGCAGATGAACA 59.699 57.895 0.21 0.00 44.01 3.18
4461 6559 2.365586 CCTCTGTCTGGGGCTCTGG 61.366 68.421 0.00 0.00 0.00 3.86
4462 6560 0.906756 TTCCTCTGTCTGGGGCTCTG 60.907 60.000 0.00 0.00 0.00 3.35
4463 6561 0.043940 ATTCCTCTGTCTGGGGCTCT 59.956 55.000 0.00 0.00 0.00 4.09
4464 6562 0.915364 AATTCCTCTGTCTGGGGCTC 59.085 55.000 0.00 0.00 0.00 4.70
4465 6563 0.915364 GAATTCCTCTGTCTGGGGCT 59.085 55.000 0.00 0.00 0.00 5.19
4466 6564 0.106967 GGAATTCCTCTGTCTGGGGC 60.107 60.000 17.73 0.00 0.00 5.80
4467 6565 1.589414 AGGAATTCCTCTGTCTGGGG 58.411 55.000 21.89 0.00 44.77 4.96
4468 6566 3.495806 GCATAGGAATTCCTCTGTCTGGG 60.496 52.174 30.35 12.45 44.77 4.45
4506 6604 8.372459 CACTAGTAGTAGTAGATGACAGGAGAT 58.628 40.741 17.30 0.00 37.40 2.75
4526 6624 3.497332 TGACACCTTCTACAGCACTAGT 58.503 45.455 0.00 0.00 0.00 2.57
4588 6691 1.909302 TCTGGAGGGAGGCTACAAAAG 59.091 52.381 0.00 0.00 0.00 2.27
4609 6712 5.244178 ACAAGGGTCTACAAAAACAACAACA 59.756 36.000 0.00 0.00 0.00 3.33
4629 6739 7.259088 AGGGATAATAGTAATGGCCTACAAG 57.741 40.000 3.32 0.00 0.00 3.16
4630 6740 7.073215 ACAAGGGATAATAGTAATGGCCTACAA 59.927 37.037 3.32 0.00 0.00 2.41
4631 6741 6.561070 ACAAGGGATAATAGTAATGGCCTACA 59.439 38.462 3.32 0.00 0.00 2.74
4632 6742 7.017319 ACAAGGGATAATAGTAATGGCCTAC 57.983 40.000 3.32 0.00 0.00 3.18
4633 6743 7.642094 AACAAGGGATAATAGTAATGGCCTA 57.358 36.000 3.32 0.00 0.00 3.93
4634 6744 6.530601 AACAAGGGATAATAGTAATGGCCT 57.469 37.500 3.32 0.00 0.00 5.19
4635 6745 7.228590 TGTAACAAGGGATAATAGTAATGGCC 58.771 38.462 0.00 0.00 0.00 5.36
4636 6746 8.863872 ATGTAACAAGGGATAATAGTAATGGC 57.136 34.615 0.00 0.00 0.00 4.40
4643 6753 8.980481 ACCAGAAATGTAACAAGGGATAATAG 57.020 34.615 0.00 0.00 0.00 1.73
4651 6761 4.455877 GGTGAGACCAGAAATGTAACAAGG 59.544 45.833 0.00 0.00 38.42 3.61
4663 6773 3.776969 AGCATGATAAAGGTGAGACCAGA 59.223 43.478 0.00 0.00 41.95 3.86
4666 6776 4.142609 TCAGCATGATAAAGGTGAGACC 57.857 45.455 0.00 0.00 42.56 3.85
4680 6793 0.809385 CTTGGGCAGTTCTCAGCATG 59.191 55.000 0.00 0.00 37.54 4.06
4693 6806 4.522789 TGATAAAGTTTCAAGTCCTTGGGC 59.477 41.667 7.16 0.00 40.78 5.36
4750 6870 3.191162 TGACAGTTGGCAAGCAACATATC 59.809 43.478 0.00 2.69 35.18 1.63
4751 6871 3.156293 TGACAGTTGGCAAGCAACATAT 58.844 40.909 0.00 0.00 35.18 1.78
4787 6907 3.004734 ACAAGAAGCATGTTAGTGGCAAC 59.995 43.478 0.00 0.00 0.00 4.17
4788 6908 3.004629 CACAAGAAGCATGTTAGTGGCAA 59.995 43.478 0.00 0.00 0.00 4.52
4789 6909 2.553602 CACAAGAAGCATGTTAGTGGCA 59.446 45.455 0.00 0.00 0.00 4.92
4816 6936 1.879380 GTGCATGCTGTTGTTGTAGGA 59.121 47.619 20.33 0.00 0.00 2.94
4836 6956 2.582728 TTGCAACAAAGGAACAGCAG 57.417 45.000 0.00 0.00 33.14 4.24
4938 7085 5.068198 CAGGGCATGTGAAGCTAATTAACAT 59.932 40.000 0.00 0.00 42.87 2.71
4958 7105 4.974721 AAGTTGGGCGCCACAGGG 62.975 66.667 30.85 0.00 30.78 4.45
4964 7111 4.133796 GATGGCAAGTTGGGCGCC 62.134 66.667 21.18 21.18 46.43 6.53
4965 7112 3.064324 AGATGGCAAGTTGGGCGC 61.064 61.111 0.00 0.00 35.84 6.53
4966 7113 2.879907 CAGATGGCAAGTTGGGCG 59.120 61.111 4.75 0.00 35.84 6.13
4967 7114 2.575461 GCAGATGGCAAGTTGGGC 59.425 61.111 4.75 0.00 43.97 5.36
4998 7156 3.244561 GGGTGACAGGAAGATGACAGAAA 60.245 47.826 0.00 0.00 0.00 2.52
5177 7352 5.211201 AGGCCCATAATATATGGCAAATCC 58.789 41.667 12.47 6.41 45.83 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.