Multiple sequence alignment - TraesCS7B01G081000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G081000 chr7B 100.000 2066 0 0 1984 4049 91240027 91237962 0.000000e+00 3816.0
1 TraesCS7B01G081000 chr7B 100.000 1775 0 0 1 1775 91242010 91240236 0.000000e+00 3278.0
2 TraesCS7B01G081000 chr7B 79.392 296 56 5 4 295 641330771 641330477 1.910000e-48 204.0
3 TraesCS7B01G081000 chr7D 91.567 2099 104 13 1987 4049 129804291 129802230 0.000000e+00 2828.0
4 TraesCS7B01G081000 chr7D 87.261 1256 119 24 2163 3396 129806867 129805631 0.000000e+00 1395.0
5 TraesCS7B01G081000 chr7D 87.110 1249 108 25 553 1771 129805631 129804406 0.000000e+00 1365.0
6 TraesCS7B01G081000 chr7D 85.581 1283 130 28 308 1551 129808150 129806884 0.000000e+00 1293.0
7 TraesCS7B01G081000 chr7D 83.573 347 50 5 3584 3925 497967596 497967252 6.530000e-83 318.0
8 TraesCS7B01G081000 chr7A 93.481 1626 85 11 2208 3818 128926132 128924513 0.000000e+00 2396.0
9 TraesCS7B01G081000 chr7A 87.592 1499 110 31 308 1770 128928105 128926647 0.000000e+00 1668.0
10 TraesCS7B01G081000 chr7A 84.150 347 48 5 3584 3925 563503620 563503276 3.020000e-86 329.0
11 TraesCS7B01G081000 chr7A 79.775 178 35 1 3726 3903 349993792 349993616 1.180000e-25 128.0
12 TraesCS7B01G081000 chr7A 81.379 145 23 4 1564 1704 562892709 562892853 9.200000e-22 115.0
13 TraesCS7B01G081000 chr7A 100.000 28 0 0 1744 1771 268863339 268863312 7.000000e-03 52.8
14 TraesCS7B01G081000 chr4A 83.239 352 53 6 3577 3925 420509346 420509694 6.530000e-83 318.0
15 TraesCS7B01G081000 chr4A 81.675 191 24 10 1586 1771 640972827 640973011 9.070000e-32 148.0
16 TraesCS7B01G081000 chr4A 82.716 81 10 3 1636 1712 470805330 470805250 7.260000e-08 69.4
17 TraesCS7B01G081000 chr4D 83.239 352 52 7 3577 3925 196874472 196874819 2.350000e-82 316.0
18 TraesCS7B01G081000 chr4D 82.609 92 14 2 1614 1703 104641540 104641631 3.350000e-11 80.5
19 TraesCS7B01G081000 chrUn 82.102 352 53 7 3577 3925 53425295 53425639 3.960000e-75 292.0
20 TraesCS7B01G081000 chr1A 83.056 301 46 5 4 300 285980092 285979793 6.670000e-68 268.0
21 TraesCS7B01G081000 chr1A 78.694 291 56 6 1 286 47552774 47553063 5.340000e-44 189.0
22 TraesCS7B01G081000 chr2A 81.595 326 51 8 3612 3933 600903172 600903492 1.120000e-65 261.0
23 TraesCS7B01G081000 chr3D 81.388 317 50 8 3612 3925 151905237 151904927 2.420000e-62 250.0
24 TraesCS7B01G081000 chr3D 84.974 193 23 6 1586 1773 1846842 1847033 1.490000e-44 191.0
25 TraesCS7B01G081000 chr3D 82.390 159 16 11 1617 1773 504046516 504046368 1.180000e-25 128.0
26 TraesCS7B01G081000 chr2B 81.356 295 52 3 4 295 570063718 570063424 1.880000e-58 237.0
27 TraesCS7B01G081000 chr2B 78.212 179 16 4 1613 1768 153902850 153902672 4.310000e-15 93.5
28 TraesCS7B01G081000 chr6A 81.333 300 47 9 1 295 573641626 573641921 6.770000e-58 235.0
29 TraesCS7B01G081000 chr6A 80.130 307 55 6 1 302 540151412 540151107 1.460000e-54 224.0
30 TraesCS7B01G081000 chr6A 100.000 28 0 0 1744 1771 23895219 23895192 7.000000e-03 52.8
31 TraesCS7B01G081000 chr6D 81.185 287 48 6 1 283 354416602 354416318 4.070000e-55 226.0
32 TraesCS7B01G081000 chr3B 79.470 302 51 9 1 295 31432485 31432782 1.910000e-48 204.0
33 TraesCS7B01G081000 chr3B 79.655 290 49 10 4 287 375167538 375167253 2.470000e-47 200.0
34 TraesCS7B01G081000 chr3B 81.410 156 21 8 1615 1769 665460347 665460199 1.980000e-23 121.0
35 TraesCS7B01G081000 chr1D 83.871 155 9 2 1632 1770 228022467 228022621 2.540000e-27 134.0
36 TraesCS7B01G081000 chr3A 79.195 149 14 9 1615 1762 642360896 642360764 2.000000e-13 87.9
37 TraesCS7B01G081000 chr3A 87.879 66 6 2 1644 1709 600925366 600925429 4.340000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G081000 chr7B 91237962 91242010 4048 True 3547.00 3816 100.00000 1 4049 2 chr7B.!!$R2 4048
1 TraesCS7B01G081000 chr7D 129802230 129808150 5920 True 1720.25 2828 87.87975 308 4049 4 chr7D.!!$R2 3741
2 TraesCS7B01G081000 chr7A 128924513 128928105 3592 True 2032.00 2396 90.53650 308 3818 2 chr7A.!!$R4 3510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.029300 CTCAACACGCCCACAAACAG 59.971 55.0 0.0 0.0 0.0 3.16 F
115 116 0.034896 AGGGAGTTGCATCGTTTCGT 59.965 50.0 0.0 0.0 0.0 3.85 F
138 139 0.036671 CCCGAGTAGGACACAAACCC 60.037 60.0 0.0 0.0 45.0 4.11 F
1443 3733 0.040067 GGTGACTTTCCTGCTTTGCG 60.040 55.0 0.0 0.0 0.0 4.85 F
1648 3961 0.615850 CGGAGGGGAAGAAGAAGCTT 59.384 55.0 0.0 0.0 0.0 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1244 3534 0.177141 TAGGCTTTCATCCGTTCGGG 59.823 55.0 11.37 0.0 37.02 5.14 R
1628 3919 0.252284 AGCTTCTTCTTCCCCTCCGA 60.252 55.0 0.00 0.0 0.00 4.55 R
1709 4046 0.605319 TTTCTCCGGCGAACTTGCAT 60.605 50.0 9.30 0.0 36.28 3.96 R
2715 5254 0.517316 GTAGAGTGCGCACCAAAAGG 59.483 55.0 35.51 0.0 0.00 3.11 R
3525 6077 0.827089 TCGGTTGTAAGTCCACCCGA 60.827 55.0 0.00 0.0 41.73 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.413765 GACAGATCCGCCGGAGAC 59.586 66.667 13.12 8.53 34.05 3.36
18 19 2.362503 ACAGATCCGCCGGAGACA 60.363 61.111 13.12 0.00 34.05 3.41
19 20 2.105128 CAGATCCGCCGGAGACAC 59.895 66.667 13.12 3.15 34.05 3.67
20 21 2.362503 AGATCCGCCGGAGACACA 60.363 61.111 13.12 0.00 34.05 3.72
21 22 2.202756 GATCCGCCGGAGACACAC 60.203 66.667 13.12 0.00 34.05 3.82
22 23 3.718210 GATCCGCCGGAGACACACC 62.718 68.421 13.12 0.00 34.05 4.16
23 24 4.988716 TCCGCCGGAGACACACCT 62.989 66.667 5.05 0.00 0.00 4.00
24 25 4.436998 CCGCCGGAGACACACCTC 62.437 72.222 5.05 0.00 0.00 3.85
25 26 3.680786 CGCCGGAGACACACCTCA 61.681 66.667 5.05 0.00 34.94 3.86
26 27 2.741092 GCCGGAGACACACCTCAA 59.259 61.111 5.05 0.00 34.94 3.02
27 28 1.668151 GCCGGAGACACACCTCAAC 60.668 63.158 5.05 0.00 34.94 3.18
28 29 1.745890 CCGGAGACACACCTCAACA 59.254 57.895 0.00 0.00 34.94 3.33
29 30 0.600255 CCGGAGACACACCTCAACAC 60.600 60.000 0.00 0.00 34.94 3.32
30 31 0.939577 CGGAGACACACCTCAACACG 60.940 60.000 0.00 0.00 34.94 4.49
31 32 1.222115 GGAGACACACCTCAACACGC 61.222 60.000 0.00 0.00 34.94 5.34
32 33 1.222115 GAGACACACCTCAACACGCC 61.222 60.000 0.00 0.00 33.50 5.68
33 34 2.203153 ACACACCTCAACACGCCC 60.203 61.111 0.00 0.00 0.00 6.13
34 35 2.203139 CACACCTCAACACGCCCA 60.203 61.111 0.00 0.00 0.00 5.36
35 36 2.203153 ACACCTCAACACGCCCAC 60.203 61.111 0.00 0.00 0.00 4.61
36 37 2.203139 CACCTCAACACGCCCACA 60.203 61.111 0.00 0.00 0.00 4.17
37 38 1.821759 CACCTCAACACGCCCACAA 60.822 57.895 0.00 0.00 0.00 3.33
38 39 1.077357 ACCTCAACACGCCCACAAA 60.077 52.632 0.00 0.00 0.00 2.83
39 40 1.358759 CCTCAACACGCCCACAAAC 59.641 57.895 0.00 0.00 0.00 2.93
40 41 1.380403 CCTCAACACGCCCACAAACA 61.380 55.000 0.00 0.00 0.00 2.83
41 42 0.029300 CTCAACACGCCCACAAACAG 59.971 55.000 0.00 0.00 0.00 3.16
42 43 0.678366 TCAACACGCCCACAAACAGT 60.678 50.000 0.00 0.00 0.00 3.55
62 63 3.678056 TGTTAGACACACCATCAGGAC 57.322 47.619 0.00 0.00 38.69 3.85
63 64 2.029380 TGTTAGACACACCATCAGGACG 60.029 50.000 0.00 0.00 38.69 4.79
64 65 1.182667 TAGACACACCATCAGGACGG 58.817 55.000 0.00 0.00 38.69 4.79
65 66 0.541998 AGACACACCATCAGGACGGA 60.542 55.000 0.00 0.00 38.69 4.69
66 67 0.108615 GACACACCATCAGGACGGAG 60.109 60.000 0.00 0.00 38.69 4.63
67 68 1.219124 CACACCATCAGGACGGAGG 59.781 63.158 0.00 0.00 38.69 4.30
68 69 2.187946 CACCATCAGGACGGAGGC 59.812 66.667 0.00 0.00 38.69 4.70
69 70 2.039624 ACCATCAGGACGGAGGCT 59.960 61.111 0.00 0.00 38.69 4.58
70 71 1.043116 CACCATCAGGACGGAGGCTA 61.043 60.000 0.00 0.00 38.69 3.93
71 72 0.757188 ACCATCAGGACGGAGGCTAG 60.757 60.000 0.00 0.00 38.69 3.42
72 73 1.467678 CCATCAGGACGGAGGCTAGG 61.468 65.000 0.00 0.00 36.89 3.02
73 74 0.757188 CATCAGGACGGAGGCTAGGT 60.757 60.000 0.00 0.00 0.00 3.08
74 75 0.757188 ATCAGGACGGAGGCTAGGTG 60.757 60.000 0.00 0.00 0.00 4.00
75 76 2.042843 AGGACGGAGGCTAGGTGG 60.043 66.667 0.00 0.00 0.00 4.61
76 77 3.155167 GGACGGAGGCTAGGTGGG 61.155 72.222 0.00 0.00 0.00 4.61
77 78 2.043248 GACGGAGGCTAGGTGGGA 60.043 66.667 0.00 0.00 0.00 4.37
78 79 2.042843 ACGGAGGCTAGGTGGGAG 60.043 66.667 0.00 0.00 0.00 4.30
79 80 2.279073 CGGAGGCTAGGTGGGAGA 59.721 66.667 0.00 0.00 0.00 3.71
80 81 1.830408 CGGAGGCTAGGTGGGAGAG 60.830 68.421 0.00 0.00 0.00 3.20
81 82 2.137528 GGAGGCTAGGTGGGAGAGC 61.138 68.421 0.00 0.00 35.39 4.09
82 83 1.381872 GAGGCTAGGTGGGAGAGCA 60.382 63.158 0.00 0.00 37.98 4.26
83 84 0.762461 GAGGCTAGGTGGGAGAGCAT 60.762 60.000 0.00 0.00 37.98 3.79
84 85 0.327000 AGGCTAGGTGGGAGAGCATT 60.327 55.000 0.00 0.00 37.98 3.56
85 86 1.062121 AGGCTAGGTGGGAGAGCATTA 60.062 52.381 0.00 0.00 37.98 1.90
86 87 1.981495 GGCTAGGTGGGAGAGCATTAT 59.019 52.381 0.00 0.00 37.98 1.28
87 88 2.373502 GGCTAGGTGGGAGAGCATTATT 59.626 50.000 0.00 0.00 37.98 1.40
88 89 3.558109 GGCTAGGTGGGAGAGCATTATTC 60.558 52.174 0.00 0.00 37.98 1.75
89 90 3.558109 GCTAGGTGGGAGAGCATTATTCC 60.558 52.174 0.00 0.00 36.20 3.01
90 91 2.492025 AGGTGGGAGAGCATTATTCCA 58.508 47.619 0.00 0.00 32.50 3.53
91 92 3.059097 AGGTGGGAGAGCATTATTCCAT 58.941 45.455 0.00 0.00 32.50 3.41
92 93 3.073650 AGGTGGGAGAGCATTATTCCATC 59.926 47.826 0.00 0.00 32.50 3.51
93 94 3.073650 GGTGGGAGAGCATTATTCCATCT 59.926 47.826 0.00 0.00 32.50 2.90
94 95 4.446889 GGTGGGAGAGCATTATTCCATCTT 60.447 45.833 0.00 0.00 32.50 2.40
95 96 4.759183 GTGGGAGAGCATTATTCCATCTTC 59.241 45.833 0.00 0.00 32.50 2.87
96 97 4.413189 TGGGAGAGCATTATTCCATCTTCA 59.587 41.667 0.00 0.00 32.50 3.02
97 98 5.002516 GGGAGAGCATTATTCCATCTTCAG 58.997 45.833 0.00 0.00 32.50 3.02
98 99 5.002516 GGAGAGCATTATTCCATCTTCAGG 58.997 45.833 0.00 0.00 0.00 3.86
99 100 4.983053 AGAGCATTATTCCATCTTCAGGG 58.017 43.478 0.00 0.00 0.00 4.45
100 101 4.662179 AGAGCATTATTCCATCTTCAGGGA 59.338 41.667 0.00 0.00 0.00 4.20
101 102 4.983053 AGCATTATTCCATCTTCAGGGAG 58.017 43.478 0.00 0.00 34.02 4.30
102 103 4.414846 AGCATTATTCCATCTTCAGGGAGT 59.585 41.667 0.00 0.00 34.02 3.85
103 104 5.103771 AGCATTATTCCATCTTCAGGGAGTT 60.104 40.000 0.00 0.00 34.02 3.01
104 105 5.009410 GCATTATTCCATCTTCAGGGAGTTG 59.991 44.000 0.00 0.00 34.02 3.16
105 106 2.496899 TTCCATCTTCAGGGAGTTGC 57.503 50.000 0.00 0.00 34.02 4.17
106 107 1.361204 TCCATCTTCAGGGAGTTGCA 58.639 50.000 0.00 0.00 0.00 4.08
107 108 1.918262 TCCATCTTCAGGGAGTTGCAT 59.082 47.619 0.00 0.00 0.00 3.96
108 109 2.092753 TCCATCTTCAGGGAGTTGCATC 60.093 50.000 0.00 0.00 0.00 3.91
109 110 1.938577 CATCTTCAGGGAGTTGCATCG 59.061 52.381 0.00 0.00 0.00 3.84
110 111 0.976641 TCTTCAGGGAGTTGCATCGT 59.023 50.000 0.00 0.00 0.00 3.73
111 112 1.347707 TCTTCAGGGAGTTGCATCGTT 59.652 47.619 0.00 0.00 0.00 3.85
112 113 2.154462 CTTCAGGGAGTTGCATCGTTT 58.846 47.619 0.00 0.00 0.00 3.60
113 114 1.808411 TCAGGGAGTTGCATCGTTTC 58.192 50.000 0.00 0.00 0.00 2.78
114 115 0.443869 CAGGGAGTTGCATCGTTTCG 59.556 55.000 0.00 0.00 0.00 3.46
115 116 0.034896 AGGGAGTTGCATCGTTTCGT 59.965 50.000 0.00 0.00 0.00 3.85
116 117 0.442699 GGGAGTTGCATCGTTTCGTC 59.557 55.000 0.00 0.00 0.00 4.20
117 118 1.429463 GGAGTTGCATCGTTTCGTCT 58.571 50.000 0.00 0.00 0.00 4.18
118 119 1.798813 GGAGTTGCATCGTTTCGTCTT 59.201 47.619 0.00 0.00 0.00 3.01
119 120 2.159827 GGAGTTGCATCGTTTCGTCTTC 60.160 50.000 0.00 0.00 0.00 2.87
120 121 1.798813 AGTTGCATCGTTTCGTCTTCC 59.201 47.619 0.00 0.00 0.00 3.46
121 122 1.136057 GTTGCATCGTTTCGTCTTCCC 60.136 52.381 0.00 0.00 0.00 3.97
122 123 1.011968 TGCATCGTTTCGTCTTCCCG 61.012 55.000 0.00 0.00 0.00 5.14
123 124 0.734942 GCATCGTTTCGTCTTCCCGA 60.735 55.000 0.00 0.00 34.52 5.14
124 125 1.269166 CATCGTTTCGTCTTCCCGAG 58.731 55.000 0.00 0.00 38.23 4.63
125 126 0.886563 ATCGTTTCGTCTTCCCGAGT 59.113 50.000 0.00 0.00 38.23 4.18
126 127 1.522668 TCGTTTCGTCTTCCCGAGTA 58.477 50.000 0.00 0.00 38.23 2.59
127 128 1.466167 TCGTTTCGTCTTCCCGAGTAG 59.534 52.381 0.00 0.00 38.23 2.57
128 129 1.467035 CGTTTCGTCTTCCCGAGTAGG 60.467 57.143 0.00 0.00 38.23 3.18
129 130 1.815003 GTTTCGTCTTCCCGAGTAGGA 59.185 52.381 0.00 0.00 45.00 2.94
130 131 1.457346 TTCGTCTTCCCGAGTAGGAC 58.543 55.000 0.00 0.00 45.00 3.85
131 132 0.325933 TCGTCTTCCCGAGTAGGACA 59.674 55.000 0.00 0.00 45.00 4.02
132 133 0.450983 CGTCTTCCCGAGTAGGACAC 59.549 60.000 0.00 0.00 45.00 3.67
133 134 1.542492 GTCTTCCCGAGTAGGACACA 58.458 55.000 0.00 0.00 45.00 3.72
134 135 1.891150 GTCTTCCCGAGTAGGACACAA 59.109 52.381 0.00 0.00 45.00 3.33
135 136 2.298163 GTCTTCCCGAGTAGGACACAAA 59.702 50.000 0.00 0.00 45.00 2.83
136 137 2.298163 TCTTCCCGAGTAGGACACAAAC 59.702 50.000 0.00 0.00 45.00 2.93
137 138 0.971386 TCCCGAGTAGGACACAAACC 59.029 55.000 0.00 0.00 45.00 3.27
138 139 0.036671 CCCGAGTAGGACACAAACCC 60.037 60.000 0.00 0.00 45.00 4.11
139 140 0.974383 CCGAGTAGGACACAAACCCT 59.026 55.000 0.00 0.00 45.00 4.34
140 141 2.173519 CCGAGTAGGACACAAACCCTA 58.826 52.381 0.00 0.00 45.00 3.53
141 142 2.564062 CCGAGTAGGACACAAACCCTAA 59.436 50.000 0.00 0.00 45.00 2.69
142 143 3.368116 CCGAGTAGGACACAAACCCTAAG 60.368 52.174 0.00 0.00 45.00 2.18
143 144 3.508793 CGAGTAGGACACAAACCCTAAGA 59.491 47.826 0.00 0.00 36.84 2.10
144 145 4.021719 CGAGTAGGACACAAACCCTAAGAA 60.022 45.833 0.00 0.00 36.84 2.52
145 146 5.510179 CGAGTAGGACACAAACCCTAAGAAA 60.510 44.000 0.00 0.00 36.84 2.52
146 147 6.256643 AGTAGGACACAAACCCTAAGAAAA 57.743 37.500 0.00 0.00 36.84 2.29
147 148 6.665695 AGTAGGACACAAACCCTAAGAAAAA 58.334 36.000 0.00 0.00 36.84 1.94
179 180 1.671742 TGGAAACAGAGACCTCCGC 59.328 57.895 0.00 0.00 35.01 5.54
180 181 1.079057 GGAAACAGAGACCTCCGCC 60.079 63.158 0.00 0.00 0.00 6.13
181 182 1.079057 GAAACAGAGACCTCCGCCC 60.079 63.158 0.00 0.00 0.00 6.13
182 183 2.837371 GAAACAGAGACCTCCGCCCG 62.837 65.000 0.00 0.00 0.00 6.13
186 187 4.821589 GAGACCTCCGCCCGCAAG 62.822 72.222 0.00 0.00 0.00 4.01
198 199 2.586245 CGCAAGGGCTGAGATCCA 59.414 61.111 0.00 0.00 38.10 3.41
199 200 1.817099 CGCAAGGGCTGAGATCCAC 60.817 63.158 0.00 0.00 38.10 4.02
200 201 1.452833 GCAAGGGCTGAGATCCACC 60.453 63.158 0.00 0.00 36.96 4.61
201 202 1.153289 CAAGGGCTGAGATCCACCG 60.153 63.158 0.00 0.00 0.00 4.94
202 203 3.036429 AAGGGCTGAGATCCACCGC 62.036 63.158 0.00 0.00 0.00 5.68
203 204 4.899239 GGGCTGAGATCCACCGCG 62.899 72.222 0.00 0.00 0.00 6.46
204 205 4.148825 GGCTGAGATCCACCGCGT 62.149 66.667 4.92 0.00 0.00 6.01
205 206 2.583593 GCTGAGATCCACCGCGTC 60.584 66.667 4.92 0.00 0.00 5.19
206 207 2.278206 CTGAGATCCACCGCGTCG 60.278 66.667 4.92 0.00 0.00 5.12
207 208 4.492160 TGAGATCCACCGCGTCGC 62.492 66.667 7.29 7.29 0.00 5.19
210 211 4.891727 GATCCACCGCGTCGCCAT 62.892 66.667 12.44 0.00 0.00 4.40
218 219 4.849310 GCGTCGCCATGGCCCTAA 62.849 66.667 30.79 11.29 37.98 2.69
219 220 2.588877 CGTCGCCATGGCCCTAAG 60.589 66.667 30.79 16.42 37.98 2.18
220 221 2.203209 GTCGCCATGGCCCTAAGG 60.203 66.667 30.79 15.66 37.98 2.69
231 232 3.863407 CCCTAAGGCCAACAGAGAC 57.137 57.895 5.01 0.00 0.00 3.36
232 233 0.108138 CCCTAAGGCCAACAGAGACG 60.108 60.000 5.01 0.00 0.00 4.18
233 234 0.895530 CCTAAGGCCAACAGAGACGA 59.104 55.000 5.01 0.00 0.00 4.20
234 235 1.275291 CCTAAGGCCAACAGAGACGAA 59.725 52.381 5.01 0.00 0.00 3.85
235 236 2.611518 CTAAGGCCAACAGAGACGAAG 58.388 52.381 5.01 0.00 0.00 3.79
236 237 0.603975 AAGGCCAACAGAGACGAAGC 60.604 55.000 5.01 0.00 0.00 3.86
237 238 2.383527 GGCCAACAGAGACGAAGCG 61.384 63.158 0.00 0.00 0.00 4.68
238 239 2.383527 GCCAACAGAGACGAAGCGG 61.384 63.158 0.00 0.00 0.00 5.52
239 240 1.289066 CCAACAGAGACGAAGCGGA 59.711 57.895 0.00 0.00 0.00 5.54
240 241 1.009389 CCAACAGAGACGAAGCGGAC 61.009 60.000 0.00 0.00 0.00 4.79
241 242 1.009389 CAACAGAGACGAAGCGGACC 61.009 60.000 0.00 0.00 0.00 4.46
242 243 1.461091 AACAGAGACGAAGCGGACCA 61.461 55.000 0.00 0.00 0.00 4.02
243 244 1.153939 CAGAGACGAAGCGGACCAG 60.154 63.158 0.00 0.00 0.00 4.00
244 245 2.507324 GAGACGAAGCGGACCAGC 60.507 66.667 0.00 0.00 37.41 4.85
245 246 4.421479 AGACGAAGCGGACCAGCG 62.421 66.667 0.00 0.00 43.00 5.18
270 271 3.291383 CCGCGGGTGGCAAGAAAA 61.291 61.111 20.10 0.00 43.84 2.29
271 272 2.050442 CGCGGGTGGCAAGAAAAC 60.050 61.111 0.00 0.00 43.84 2.43
272 273 2.338620 GCGGGTGGCAAGAAAACC 59.661 61.111 0.00 0.00 42.87 3.27
277 278 2.579410 GGTGGCAAGAAAACCCTAGA 57.421 50.000 0.00 0.00 0.00 2.43
278 279 2.160205 GGTGGCAAGAAAACCCTAGAC 58.840 52.381 0.00 0.00 0.00 2.59
279 280 2.224793 GGTGGCAAGAAAACCCTAGACT 60.225 50.000 0.00 0.00 0.00 3.24
280 281 3.487372 GTGGCAAGAAAACCCTAGACTT 58.513 45.455 0.00 0.00 0.00 3.01
281 282 3.889538 GTGGCAAGAAAACCCTAGACTTT 59.110 43.478 0.00 0.00 0.00 2.66
282 283 4.341235 GTGGCAAGAAAACCCTAGACTTTT 59.659 41.667 0.00 0.00 0.00 2.27
283 284 4.959839 TGGCAAGAAAACCCTAGACTTTTT 59.040 37.500 0.00 0.00 0.00 1.94
301 302 3.680777 TTTTTGGGGAGGAGACTTGTT 57.319 42.857 0.00 0.00 44.43 2.83
302 303 3.680777 TTTTGGGGAGGAGACTTGTTT 57.319 42.857 0.00 0.00 44.43 2.83
303 304 4.799715 TTTTGGGGAGGAGACTTGTTTA 57.200 40.909 0.00 0.00 44.43 2.01
304 305 5.333566 TTTTGGGGAGGAGACTTGTTTAT 57.666 39.130 0.00 0.00 44.43 1.40
305 306 4.569719 TTGGGGAGGAGACTTGTTTATC 57.430 45.455 0.00 0.00 44.43 1.75
306 307 3.803340 TGGGGAGGAGACTTGTTTATCT 58.197 45.455 0.00 0.00 44.43 1.98
311 312 5.425862 GGGAGGAGACTTGTTTATCTAAGGT 59.574 44.000 0.00 0.00 44.43 3.50
323 324 9.537852 TTGTTTATCTAAGGTAGAAGGTGACTA 57.462 33.333 0.00 0.00 42.68 2.59
328 329 2.522185 AGGTAGAAGGTGACTAACGCA 58.478 47.619 0.00 0.00 42.68 5.24
446 450 5.480205 CATCACATGAGCATGCTATAGACT 58.520 41.667 22.74 0.00 42.39 3.24
492 496 5.335661 GGTTAAGAAGCACCAAATACACAGG 60.336 44.000 0.00 0.00 32.74 4.00
634 2913 2.949451 AGGATCGTAGCTGTGACAAG 57.051 50.000 0.00 0.00 0.00 3.16
651 2930 3.127533 GCACATGCTCCGGACACC 61.128 66.667 0.00 0.00 38.21 4.16
652 2931 2.347114 CACATGCTCCGGACACCA 59.653 61.111 0.00 0.00 0.00 4.17
654 2933 2.124983 CATGCTCCGGACACCAGG 60.125 66.667 0.00 0.00 0.00 4.45
655 2934 2.607750 ATGCTCCGGACACCAGGT 60.608 61.111 0.00 0.00 0.00 4.00
656 2935 2.959484 ATGCTCCGGACACCAGGTG 61.959 63.158 18.93 18.93 39.75 4.00
682 2964 4.264253 TGCAATTCATGGTTGGTAGAGAG 58.736 43.478 11.86 0.00 0.00 3.20
782 3064 0.863144 TCCAAACGCAGTAGAAACGC 59.137 50.000 0.00 0.00 45.00 4.84
783 3065 0.584396 CCAAACGCAGTAGAAACGCA 59.416 50.000 0.00 0.00 45.00 5.24
806 3088 3.310774 CAGGCATACATAAGCTGTCACAC 59.689 47.826 0.00 0.00 39.39 3.82
809 3091 2.665649 TACATAAGCTGTCACACGGG 57.334 50.000 0.00 0.00 39.39 5.28
818 3100 2.125713 TCACACGGGCATGCTACG 60.126 61.111 25.82 25.82 0.00 3.51
826 3108 1.090052 GGGCATGCTACGGTCAGTTC 61.090 60.000 18.92 0.00 0.00 3.01
832 3114 3.462483 TGCTACGGTCAGTTCAAGAAA 57.538 42.857 0.00 0.00 0.00 2.52
840 3122 4.260784 CGGTCAGTTCAAGAAAACTCCAAG 60.261 45.833 0.00 0.00 37.38 3.61
937 3226 7.926555 AGACGAACTCTCTCAGAAAACAATTAA 59.073 33.333 0.00 0.00 0.00 1.40
938 3227 8.077836 ACGAACTCTCTCAGAAAACAATTAAG 57.922 34.615 0.00 0.00 0.00 1.85
958 3248 3.524541 AGAAAAGCCAAACAAAGCAGTG 58.475 40.909 0.00 0.00 0.00 3.66
1018 3308 3.978723 CTCACAGCCTCGGCAGACG 62.979 68.421 11.02 0.00 44.88 4.18
1192 3482 3.771160 CGCGGCCTCCCAACTACT 61.771 66.667 0.00 0.00 0.00 2.57
1198 3488 0.537653 GCCTCCCAACTACTGGTCTC 59.462 60.000 0.00 0.00 44.76 3.36
1200 3490 0.173708 CTCCCAACTACTGGTCTCGC 59.826 60.000 0.00 0.00 44.76 5.03
1210 3500 2.126031 GGTCTCGCTCGGGAACAC 60.126 66.667 1.83 0.00 31.36 3.32
1215 3505 0.878523 CTCGCTCGGGAACACAACAA 60.879 55.000 0.00 0.00 0.00 2.83
1267 3557 1.664151 GAACGGATGAAAGCCTAACCG 59.336 52.381 0.00 0.00 43.22 4.44
1443 3733 0.040067 GGTGACTTTCCTGCTTTGCG 60.040 55.000 0.00 0.00 0.00 4.85
1501 3791 3.592059 TGTGGTTATGTTTAGACGGAGC 58.408 45.455 0.00 0.00 0.00 4.70
1541 3831 5.249622 TGGATCTTGGTGTGGAGTTATACAA 59.750 40.000 0.00 0.00 0.00 2.41
1572 3862 9.477484 AAATACACAATAGCTAGTAGTACATGC 57.523 33.333 2.52 6.27 0.00 4.06
1601 3892 3.243704 CCTCGCTTTTGAATTTGGGTCAA 60.244 43.478 0.00 0.00 33.21 3.18
1628 3919 2.526432 TCGCTAGAAGGGAGAAACAGT 58.474 47.619 0.00 0.00 31.82 3.55
1638 3951 0.974383 GAGAAACAGTCGGAGGGGAA 59.026 55.000 0.00 0.00 0.00 3.97
1648 3961 0.615850 CGGAGGGGAAGAAGAAGCTT 59.384 55.000 0.00 0.00 0.00 3.74
1654 3967 1.546548 GGGAAGAAGAAGCTTGCTGGT 60.547 52.381 2.10 0.00 36.58 4.00
1683 3996 4.140447 ACCCCATCATCTATCTTAGGGTGA 60.140 45.833 0.00 0.00 44.84 4.02
2022 4359 5.292815 AGGGAGGAGGAAGAAGACATAATT 58.707 41.667 0.00 0.00 0.00 1.40
2024 4361 5.825151 GGGAGGAGGAAGAAGACATAATTTG 59.175 44.000 0.00 0.00 0.00 2.32
2029 4366 7.403231 AGGAGGAAGAAGACATAATTTGGACTA 59.597 37.037 0.00 0.00 0.00 2.59
2072 4409 3.628942 TGAGATTGATCCTGCCAAAATCG 59.371 43.478 0.00 0.00 33.47 3.34
2099 4436 5.518487 TGTTCCAAAAGAAATTTTCAGTCGC 59.482 36.000 11.53 0.00 35.85 5.19
2101 4438 3.425193 CCAAAAGAAATTTTCAGTCGCCG 59.575 43.478 11.53 0.00 0.00 6.46
2110 4447 4.208686 CAGTCGCCGGGCTCCTAC 62.209 72.222 18.34 9.72 0.00 3.18
2137 4474 9.754382 CCATTCCCAAAGAAATATTACAATCTG 57.246 33.333 0.00 0.00 38.21 2.90
2232 4747 5.047377 TGTTTAGAAGGATGAATTTGTGGGC 60.047 40.000 0.00 0.00 0.00 5.36
2318 4833 6.631971 TCAGTAGAAACATGAATTTGTGCA 57.368 33.333 0.00 0.00 0.00 4.57
2323 4838 2.945447 ACATGAATTTGTGCATCCCG 57.055 45.000 0.00 0.00 0.00 5.14
2725 5264 6.569179 TTCATAAGTACTTCCTTTTGGTGC 57.431 37.500 12.39 0.00 41.38 5.01
2775 5314 4.156008 CCACTTATTTACCACTTGCAGGAC 59.844 45.833 1.40 0.00 0.00 3.85
2835 5374 3.652057 ATGAGAATTGTTGGATCCGGT 57.348 42.857 7.39 0.00 0.00 5.28
2864 5403 4.916183 TGATGTGTTCACATATGGTTGGA 58.084 39.130 16.79 0.00 0.00 3.53
2954 5493 6.700081 TGTTACTGAGTTTGTGATGTAGTGTC 59.300 38.462 0.00 0.00 0.00 3.67
3128 5671 2.514458 AAGCTTATGGGAGGTTGGTG 57.486 50.000 0.00 0.00 36.13 4.17
3248 5791 4.519350 GCCTAAGGATGTAAATGGGTAAGC 59.481 45.833 0.00 0.00 0.00 3.09
3345 5888 5.489792 AATCCTGACAAAGACAAGCTCTA 57.510 39.130 0.00 0.00 0.00 2.43
3496 6048 5.133221 GCTTCCTTCCTGGCAAATATCTTA 58.867 41.667 0.00 0.00 35.26 2.10
3525 6077 2.049433 CGCTTCCGGTGTCTTCGT 60.049 61.111 0.00 0.00 0.00 3.85
3556 6108 1.112113 ACAACCGACCGCTCATCTAT 58.888 50.000 0.00 0.00 0.00 1.98
3570 6122 5.469479 GCTCATCTATAAGTTCAGAGCCTC 58.531 45.833 0.00 0.00 40.68 4.70
3609 6161 2.158559 AGAATACCACGCATGTTGCAA 58.841 42.857 0.00 0.00 45.36 4.08
3619 6171 1.987770 GCATGTTGCAACGGAATTGAG 59.012 47.619 23.79 8.63 44.26 3.02
3799 6353 4.080129 ACACATTGCATGGTAGAGGATTCT 60.080 41.667 0.00 0.00 34.28 2.40
3810 6364 6.194967 TGGTAGAGGATTCTCATGTGTAGAA 58.805 40.000 3.21 0.00 42.34 2.10
3819 6373 3.381590 TCTCATGTGTAGAATCAGACGGG 59.618 47.826 0.00 0.00 0.00 5.28
3829 6383 1.330655 ATCAGACGGGCACTAGTGGG 61.331 60.000 23.95 0.00 0.00 4.61
3854 6408 4.323553 AGCTAGTAAATCCAACGGCTAG 57.676 45.455 0.00 0.00 32.22 3.42
3879 6433 7.496591 AGAACAATTTTGATGTTGTGAAAGCAT 59.503 29.630 0.00 0.00 40.90 3.79
3880 6434 6.950545 ACAATTTTGATGTTGTGAAAGCATG 58.049 32.000 0.00 0.00 37.19 4.06
3884 6438 3.580731 TGATGTTGTGAAAGCATGCATG 58.419 40.909 22.70 22.70 0.00 4.06
3922 6476 5.205056 AGTAGTAGGGATCACTCTCTTTGG 58.795 45.833 0.00 0.00 33.07 3.28
3925 6479 4.957327 AGTAGGGATCACTCTCTTTGGTAC 59.043 45.833 0.00 0.00 33.07 3.34
3954 6508 5.552870 GGACTCTCCTATCTAAATGGCAA 57.447 43.478 0.00 0.00 32.53 4.52
3963 6517 8.650143 TCCTATCTAAATGGCAAAGAAGTTTT 57.350 30.769 0.00 0.00 0.00 2.43
3965 6519 8.522830 CCTATCTAAATGGCAAAGAAGTTTTCA 58.477 33.333 0.00 0.00 0.00 2.69
4038 6592 9.724839 CAAACGGGGTAAACTAATGTAATTATG 57.275 33.333 0.00 0.00 38.29 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.413765 GTCTCCGGCGGATCTGTC 59.586 66.667 31.23 12.09 0.00 3.51
1 2 2.362503 TGTCTCCGGCGGATCTGT 60.363 61.111 31.23 0.00 0.00 3.41
2 3 2.105128 GTGTCTCCGGCGGATCTG 59.895 66.667 31.23 18.47 0.00 2.90
3 4 2.362503 TGTGTCTCCGGCGGATCT 60.363 61.111 31.23 0.00 0.00 2.75
4 5 2.202756 GTGTGTCTCCGGCGGATC 60.203 66.667 31.23 24.22 0.00 3.36
5 6 3.771160 GGTGTGTCTCCGGCGGAT 61.771 66.667 31.23 0.00 0.00 4.18
6 7 4.988716 AGGTGTGTCTCCGGCGGA 62.989 66.667 29.14 29.14 0.00 5.54
7 8 4.436998 GAGGTGTGTCTCCGGCGG 62.437 72.222 22.51 22.51 0.00 6.13
8 9 3.220999 TTGAGGTGTGTCTCCGGCG 62.221 63.158 0.00 0.00 33.04 6.46
9 10 1.668151 GTTGAGGTGTGTCTCCGGC 60.668 63.158 0.00 0.00 33.04 6.13
10 11 0.600255 GTGTTGAGGTGTGTCTCCGG 60.600 60.000 0.00 0.00 33.04 5.14
11 12 0.939577 CGTGTTGAGGTGTGTCTCCG 60.940 60.000 0.00 0.00 33.04 4.63
12 13 1.222115 GCGTGTTGAGGTGTGTCTCC 61.222 60.000 0.00 0.00 33.04 3.71
13 14 1.222115 GGCGTGTTGAGGTGTGTCTC 61.222 60.000 0.00 0.00 0.00 3.36
14 15 1.227556 GGCGTGTTGAGGTGTGTCT 60.228 57.895 0.00 0.00 0.00 3.41
15 16 2.251642 GGGCGTGTTGAGGTGTGTC 61.252 63.158 0.00 0.00 0.00 3.67
16 17 2.203153 GGGCGTGTTGAGGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
17 18 2.203139 TGGGCGTGTTGAGGTGTG 60.203 61.111 0.00 0.00 0.00 3.82
18 19 2.203153 GTGGGCGTGTTGAGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
19 20 1.380403 TTTGTGGGCGTGTTGAGGTG 61.380 55.000 0.00 0.00 0.00 4.00
20 21 1.077357 TTTGTGGGCGTGTTGAGGT 60.077 52.632 0.00 0.00 0.00 3.85
21 22 1.358759 GTTTGTGGGCGTGTTGAGG 59.641 57.895 0.00 0.00 0.00 3.86
22 23 0.029300 CTGTTTGTGGGCGTGTTGAG 59.971 55.000 0.00 0.00 0.00 3.02
23 24 0.678366 ACTGTTTGTGGGCGTGTTGA 60.678 50.000 0.00 0.00 0.00 3.18
24 25 0.525242 CACTGTTTGTGGGCGTGTTG 60.525 55.000 0.00 0.00 42.68 3.33
25 26 1.806568 CACTGTTTGTGGGCGTGTT 59.193 52.632 0.00 0.00 42.68 3.32
26 27 3.508474 CACTGTTTGTGGGCGTGT 58.492 55.556 0.00 0.00 42.68 4.49
42 43 2.029380 CGTCCTGATGGTGTGTCTAACA 60.029 50.000 0.00 0.00 36.04 2.41
43 44 2.607187 CGTCCTGATGGTGTGTCTAAC 58.393 52.381 0.00 0.00 34.23 2.34
44 45 1.548719 CCGTCCTGATGGTGTGTCTAA 59.451 52.381 0.00 0.00 32.81 2.10
45 46 1.182667 CCGTCCTGATGGTGTGTCTA 58.817 55.000 0.00 0.00 32.81 2.59
46 47 0.541998 TCCGTCCTGATGGTGTGTCT 60.542 55.000 5.35 0.00 38.61 3.41
47 48 0.108615 CTCCGTCCTGATGGTGTGTC 60.109 60.000 5.35 0.00 38.61 3.67
48 49 1.544825 CCTCCGTCCTGATGGTGTGT 61.545 60.000 5.35 0.00 38.61 3.72
49 50 1.219124 CCTCCGTCCTGATGGTGTG 59.781 63.158 5.35 0.00 38.61 3.82
50 51 2.660064 GCCTCCGTCCTGATGGTGT 61.660 63.158 5.35 0.00 38.61 4.16
51 52 1.043116 TAGCCTCCGTCCTGATGGTG 61.043 60.000 5.35 3.23 38.61 4.17
52 53 0.757188 CTAGCCTCCGTCCTGATGGT 60.757 60.000 5.35 0.00 38.61 3.55
53 54 1.467678 CCTAGCCTCCGTCCTGATGG 61.468 65.000 0.00 0.00 38.85 3.51
54 55 0.757188 ACCTAGCCTCCGTCCTGATG 60.757 60.000 0.00 0.00 0.00 3.07
55 56 0.757188 CACCTAGCCTCCGTCCTGAT 60.757 60.000 0.00 0.00 0.00 2.90
56 57 1.379977 CACCTAGCCTCCGTCCTGA 60.380 63.158 0.00 0.00 0.00 3.86
57 58 2.427245 CCACCTAGCCTCCGTCCTG 61.427 68.421 0.00 0.00 0.00 3.86
58 59 2.042843 CCACCTAGCCTCCGTCCT 60.043 66.667 0.00 0.00 0.00 3.85
59 60 3.155167 CCCACCTAGCCTCCGTCC 61.155 72.222 0.00 0.00 0.00 4.79
60 61 2.043248 TCCCACCTAGCCTCCGTC 60.043 66.667 0.00 0.00 0.00 4.79
61 62 2.042843 CTCCCACCTAGCCTCCGT 60.043 66.667 0.00 0.00 0.00 4.69
62 63 1.830408 CTCTCCCACCTAGCCTCCG 60.830 68.421 0.00 0.00 0.00 4.63
63 64 2.137528 GCTCTCCCACCTAGCCTCC 61.138 68.421 0.00 0.00 0.00 4.30
64 65 0.762461 ATGCTCTCCCACCTAGCCTC 60.762 60.000 0.00 0.00 35.33 4.70
65 66 0.327000 AATGCTCTCCCACCTAGCCT 60.327 55.000 0.00 0.00 35.33 4.58
66 67 1.424638 TAATGCTCTCCCACCTAGCC 58.575 55.000 0.00 0.00 35.33 3.93
67 68 3.558109 GGAATAATGCTCTCCCACCTAGC 60.558 52.174 0.00 0.00 36.77 3.42
68 69 3.648067 TGGAATAATGCTCTCCCACCTAG 59.352 47.826 0.00 0.00 0.00 3.02
69 70 3.664320 TGGAATAATGCTCTCCCACCTA 58.336 45.455 0.00 0.00 0.00 3.08
70 71 2.492025 TGGAATAATGCTCTCCCACCT 58.508 47.619 0.00 0.00 0.00 4.00
71 72 3.073650 AGATGGAATAATGCTCTCCCACC 59.926 47.826 0.00 0.00 0.00 4.61
72 73 4.363991 AGATGGAATAATGCTCTCCCAC 57.636 45.455 0.00 0.00 0.00 4.61
73 74 4.413189 TGAAGATGGAATAATGCTCTCCCA 59.587 41.667 0.00 0.00 0.00 4.37
74 75 4.978099 TGAAGATGGAATAATGCTCTCCC 58.022 43.478 0.00 0.00 0.00 4.30
75 76 5.002516 CCTGAAGATGGAATAATGCTCTCC 58.997 45.833 0.00 0.00 0.00 3.71
76 77 5.002516 CCCTGAAGATGGAATAATGCTCTC 58.997 45.833 0.00 0.00 0.00 3.20
77 78 4.662179 TCCCTGAAGATGGAATAATGCTCT 59.338 41.667 0.00 0.00 0.00 4.09
78 79 4.978099 TCCCTGAAGATGGAATAATGCTC 58.022 43.478 0.00 0.00 0.00 4.26
79 80 4.414846 ACTCCCTGAAGATGGAATAATGCT 59.585 41.667 0.00 0.00 0.00 3.79
80 81 4.723309 ACTCCCTGAAGATGGAATAATGC 58.277 43.478 0.00 0.00 0.00 3.56
81 82 5.009410 GCAACTCCCTGAAGATGGAATAATG 59.991 44.000 0.00 0.00 0.00 1.90
82 83 5.136105 GCAACTCCCTGAAGATGGAATAAT 58.864 41.667 0.00 0.00 0.00 1.28
83 84 4.018506 TGCAACTCCCTGAAGATGGAATAA 60.019 41.667 0.00 0.00 0.00 1.40
84 85 3.523157 TGCAACTCCCTGAAGATGGAATA 59.477 43.478 0.00 0.00 0.00 1.75
85 86 2.309755 TGCAACTCCCTGAAGATGGAAT 59.690 45.455 0.00 0.00 0.00 3.01
86 87 1.704628 TGCAACTCCCTGAAGATGGAA 59.295 47.619 0.00 0.00 0.00 3.53
87 88 1.361204 TGCAACTCCCTGAAGATGGA 58.639 50.000 0.00 0.00 0.00 3.41
88 89 2.295885 GATGCAACTCCCTGAAGATGG 58.704 52.381 0.00 0.00 0.00 3.51
89 90 1.938577 CGATGCAACTCCCTGAAGATG 59.061 52.381 0.00 0.00 0.00 2.90
90 91 1.556911 ACGATGCAACTCCCTGAAGAT 59.443 47.619 0.00 0.00 0.00 2.40
91 92 0.976641 ACGATGCAACTCCCTGAAGA 59.023 50.000 0.00 0.00 0.00 2.87
92 93 1.813513 AACGATGCAACTCCCTGAAG 58.186 50.000 0.00 0.00 0.00 3.02
93 94 2.151202 GAAACGATGCAACTCCCTGAA 58.849 47.619 0.00 0.00 0.00 3.02
94 95 1.808411 GAAACGATGCAACTCCCTGA 58.192 50.000 0.00 0.00 0.00 3.86
95 96 0.443869 CGAAACGATGCAACTCCCTG 59.556 55.000 0.00 0.00 0.00 4.45
96 97 0.034896 ACGAAACGATGCAACTCCCT 59.965 50.000 0.00 0.00 0.00 4.20
97 98 0.442699 GACGAAACGATGCAACTCCC 59.557 55.000 0.00 0.00 0.00 4.30
98 99 1.429463 AGACGAAACGATGCAACTCC 58.571 50.000 0.00 0.00 0.00 3.85
99 100 2.159827 GGAAGACGAAACGATGCAACTC 60.160 50.000 0.00 0.00 0.00 3.01
100 101 1.798813 GGAAGACGAAACGATGCAACT 59.201 47.619 0.00 0.00 0.00 3.16
101 102 1.136057 GGGAAGACGAAACGATGCAAC 60.136 52.381 0.00 0.00 0.00 4.17
102 103 1.153353 GGGAAGACGAAACGATGCAA 58.847 50.000 0.00 0.00 0.00 4.08
103 104 1.011968 CGGGAAGACGAAACGATGCA 61.012 55.000 0.00 0.00 35.47 3.96
104 105 0.734942 TCGGGAAGACGAAACGATGC 60.735 55.000 0.00 0.00 40.34 3.91
105 106 1.269166 CTCGGGAAGACGAAACGATG 58.731 55.000 0.00 0.00 42.98 3.84
106 107 0.886563 ACTCGGGAAGACGAAACGAT 59.113 50.000 0.00 0.00 42.98 3.73
107 108 1.466167 CTACTCGGGAAGACGAAACGA 59.534 52.381 0.00 0.00 42.98 3.85
108 109 1.467035 CCTACTCGGGAAGACGAAACG 60.467 57.143 0.00 0.00 42.98 3.60
109 110 1.815003 TCCTACTCGGGAAGACGAAAC 59.185 52.381 0.00 0.00 42.98 2.78
110 111 1.815003 GTCCTACTCGGGAAGACGAAA 59.185 52.381 0.00 0.00 42.98 3.46
111 112 1.271543 TGTCCTACTCGGGAAGACGAA 60.272 52.381 0.00 0.00 42.98 3.85
112 113 0.325933 TGTCCTACTCGGGAAGACGA 59.674 55.000 0.00 0.00 41.13 4.20
113 114 0.450983 GTGTCCTACTCGGGAAGACG 59.549 60.000 0.00 0.00 37.10 4.18
114 115 1.542492 TGTGTCCTACTCGGGAAGAC 58.458 55.000 0.00 0.00 37.10 3.01
115 116 2.297698 TTGTGTCCTACTCGGGAAGA 57.702 50.000 0.00 0.00 37.10 2.87
116 117 2.612221 GGTTTGTGTCCTACTCGGGAAG 60.612 54.545 0.00 0.00 37.10 3.46
117 118 1.345415 GGTTTGTGTCCTACTCGGGAA 59.655 52.381 0.00 0.00 37.10 3.97
118 119 0.971386 GGTTTGTGTCCTACTCGGGA 59.029 55.000 0.00 0.00 0.00 5.14
119 120 0.036671 GGGTTTGTGTCCTACTCGGG 60.037 60.000 0.00 0.00 0.00 5.14
120 121 0.974383 AGGGTTTGTGTCCTACTCGG 59.026 55.000 0.00 0.00 0.00 4.63
121 122 3.508793 TCTTAGGGTTTGTGTCCTACTCG 59.491 47.826 0.00 0.00 35.56 4.18
122 123 5.479124 TTCTTAGGGTTTGTGTCCTACTC 57.521 43.478 0.00 0.00 35.56 2.59
123 124 5.899631 TTTCTTAGGGTTTGTGTCCTACT 57.100 39.130 0.00 0.00 35.56 2.57
124 125 6.947644 TTTTTCTTAGGGTTTGTGTCCTAC 57.052 37.500 0.00 0.00 35.56 3.18
144 145 9.936759 TCTGTTTCCAGTTGTTTCTTTATTTTT 57.063 25.926 0.00 0.00 39.82 1.94
145 146 9.586435 CTCTGTTTCCAGTTGTTTCTTTATTTT 57.414 29.630 0.00 0.00 39.82 1.82
146 147 8.966868 TCTCTGTTTCCAGTTGTTTCTTTATTT 58.033 29.630 0.00 0.00 39.82 1.40
147 148 8.406297 GTCTCTGTTTCCAGTTGTTTCTTTATT 58.594 33.333 0.00 0.00 39.82 1.40
148 149 7.013369 GGTCTCTGTTTCCAGTTGTTTCTTTAT 59.987 37.037 0.00 0.00 39.82 1.40
149 150 6.317893 GGTCTCTGTTTCCAGTTGTTTCTTTA 59.682 38.462 0.00 0.00 39.82 1.85
150 151 5.125578 GGTCTCTGTTTCCAGTTGTTTCTTT 59.874 40.000 0.00 0.00 39.82 2.52
151 152 4.640647 GGTCTCTGTTTCCAGTTGTTTCTT 59.359 41.667 0.00 0.00 39.82 2.52
152 153 4.080299 AGGTCTCTGTTTCCAGTTGTTTCT 60.080 41.667 0.00 0.00 39.82 2.52
153 154 4.200092 AGGTCTCTGTTTCCAGTTGTTTC 58.800 43.478 0.00 0.00 39.82 2.78
154 155 4.200092 GAGGTCTCTGTTTCCAGTTGTTT 58.800 43.478 0.00 0.00 39.82 2.83
155 156 3.433740 GGAGGTCTCTGTTTCCAGTTGTT 60.434 47.826 0.00 0.00 39.82 2.83
156 157 2.104963 GGAGGTCTCTGTTTCCAGTTGT 59.895 50.000 0.00 0.00 39.82 3.32
157 158 2.772287 GGAGGTCTCTGTTTCCAGTTG 58.228 52.381 0.00 0.00 39.82 3.16
158 159 1.344763 CGGAGGTCTCTGTTTCCAGTT 59.655 52.381 0.00 0.00 39.82 3.16
159 160 0.969894 CGGAGGTCTCTGTTTCCAGT 59.030 55.000 0.00 0.00 39.82 4.00
160 161 0.390472 GCGGAGGTCTCTGTTTCCAG 60.390 60.000 8.41 0.00 38.23 3.86
161 162 1.671742 GCGGAGGTCTCTGTTTCCA 59.328 57.895 8.41 0.00 38.23 3.53
162 163 1.079057 GGCGGAGGTCTCTGTTTCC 60.079 63.158 8.41 0.00 38.23 3.13
163 164 1.079057 GGGCGGAGGTCTCTGTTTC 60.079 63.158 8.41 0.25 38.23 2.78
164 165 2.943978 CGGGCGGAGGTCTCTGTTT 61.944 63.158 8.41 0.00 38.23 2.83
165 166 3.382832 CGGGCGGAGGTCTCTGTT 61.383 66.667 8.41 0.00 38.23 3.16
169 170 4.821589 CTTGCGGGCGGAGGTCTC 62.822 72.222 0.00 0.00 0.00 3.36
180 181 2.203126 GGATCTCAGCCCTTGCGG 60.203 66.667 0.00 0.00 44.33 5.69
181 182 1.817099 GTGGATCTCAGCCCTTGCG 60.817 63.158 0.00 0.00 44.33 4.85
182 183 1.452833 GGTGGATCTCAGCCCTTGC 60.453 63.158 0.00 0.00 37.88 4.01
183 184 1.153289 CGGTGGATCTCAGCCCTTG 60.153 63.158 7.51 0.00 40.54 3.61
184 185 3.036429 GCGGTGGATCTCAGCCCTT 62.036 63.158 7.51 0.00 40.54 3.95
185 186 3.474570 GCGGTGGATCTCAGCCCT 61.475 66.667 7.51 0.00 40.54 5.19
186 187 4.899239 CGCGGTGGATCTCAGCCC 62.899 72.222 0.00 0.00 40.54 5.19
187 188 4.148825 ACGCGGTGGATCTCAGCC 62.149 66.667 12.47 0.00 40.54 4.85
188 189 2.583593 GACGCGGTGGATCTCAGC 60.584 66.667 12.47 0.00 40.26 4.26
189 190 2.278206 CGACGCGGTGGATCTCAG 60.278 66.667 12.47 0.00 0.00 3.35
190 191 4.492160 GCGACGCGGTGGATCTCA 62.492 66.667 12.47 0.00 0.00 3.27
193 194 4.891727 ATGGCGACGCGGTGGATC 62.892 66.667 14.61 0.00 0.00 3.36
201 202 4.849310 TTAGGGCCATGGCGACGC 62.849 66.667 29.90 16.08 43.06 5.19
202 203 2.588877 CTTAGGGCCATGGCGACG 60.589 66.667 29.90 11.86 43.06 5.12
203 204 2.203209 CCTTAGGGCCATGGCGAC 60.203 66.667 29.90 24.14 43.06 5.19
213 214 0.108138 CGTCTCTGTTGGCCTTAGGG 60.108 60.000 3.32 0.00 0.00 3.53
214 215 0.895530 TCGTCTCTGTTGGCCTTAGG 59.104 55.000 3.32 0.00 0.00 2.69
215 216 2.611518 CTTCGTCTCTGTTGGCCTTAG 58.388 52.381 3.32 0.00 0.00 2.18
216 217 1.337823 GCTTCGTCTCTGTTGGCCTTA 60.338 52.381 3.32 0.00 0.00 2.69
217 218 0.603975 GCTTCGTCTCTGTTGGCCTT 60.604 55.000 3.32 0.00 0.00 4.35
218 219 1.004440 GCTTCGTCTCTGTTGGCCT 60.004 57.895 3.32 0.00 0.00 5.19
219 220 2.383527 CGCTTCGTCTCTGTTGGCC 61.384 63.158 0.00 0.00 0.00 5.36
220 221 2.383527 CCGCTTCGTCTCTGTTGGC 61.384 63.158 0.00 0.00 0.00 4.52
221 222 1.009389 GTCCGCTTCGTCTCTGTTGG 61.009 60.000 0.00 0.00 0.00 3.77
222 223 1.009389 GGTCCGCTTCGTCTCTGTTG 61.009 60.000 0.00 0.00 0.00 3.33
223 224 1.289380 GGTCCGCTTCGTCTCTGTT 59.711 57.895 0.00 0.00 0.00 3.16
224 225 1.867919 CTGGTCCGCTTCGTCTCTGT 61.868 60.000 0.00 0.00 0.00 3.41
225 226 1.153939 CTGGTCCGCTTCGTCTCTG 60.154 63.158 0.00 0.00 0.00 3.35
226 227 2.995872 GCTGGTCCGCTTCGTCTCT 61.996 63.158 0.00 0.00 0.00 3.10
227 228 2.507324 GCTGGTCCGCTTCGTCTC 60.507 66.667 0.00 0.00 0.00 3.36
228 229 4.421479 CGCTGGTCCGCTTCGTCT 62.421 66.667 4.57 0.00 0.00 4.18
253 254 3.291383 TTTTCTTGCCACCCGCGG 61.291 61.111 21.04 21.04 42.08 6.46
254 255 2.050442 GTTTTCTTGCCACCCGCG 60.050 61.111 0.00 0.00 42.08 6.46
255 256 2.338620 GGTTTTCTTGCCACCCGC 59.661 61.111 0.00 0.00 38.31 6.13
256 257 3.047735 GGGTTTTCTTGCCACCCG 58.952 61.111 0.00 0.00 41.00 5.28
258 259 2.160205 GTCTAGGGTTTTCTTGCCACC 58.840 52.381 0.00 0.00 0.00 4.61
259 260 3.141767 AGTCTAGGGTTTTCTTGCCAC 57.858 47.619 0.00 0.00 0.00 5.01
260 261 3.876309 AAGTCTAGGGTTTTCTTGCCA 57.124 42.857 0.00 0.00 0.00 4.92
261 262 5.531122 AAAAAGTCTAGGGTTTTCTTGCC 57.469 39.130 4.15 0.00 0.00 4.52
281 282 3.680777 AACAAGTCTCCTCCCCAAAAA 57.319 42.857 0.00 0.00 0.00 1.94
282 283 3.680777 AAACAAGTCTCCTCCCCAAAA 57.319 42.857 0.00 0.00 0.00 2.44
283 284 4.601857 AGATAAACAAGTCTCCTCCCCAAA 59.398 41.667 0.00 0.00 0.00 3.28
284 285 4.175962 AGATAAACAAGTCTCCTCCCCAA 58.824 43.478 0.00 0.00 0.00 4.12
285 286 3.803340 AGATAAACAAGTCTCCTCCCCA 58.197 45.455 0.00 0.00 0.00 4.96
286 287 5.163290 CCTTAGATAAACAAGTCTCCTCCCC 60.163 48.000 0.00 0.00 0.00 4.81
287 288 5.425862 ACCTTAGATAAACAAGTCTCCTCCC 59.574 44.000 0.00 0.00 0.00 4.30
288 289 6.547930 ACCTTAGATAAACAAGTCTCCTCC 57.452 41.667 0.00 0.00 0.00 4.30
289 290 8.522542 TCTACCTTAGATAAACAAGTCTCCTC 57.477 38.462 0.00 0.00 0.00 3.71
290 291 8.896722 TTCTACCTTAGATAAACAAGTCTCCT 57.103 34.615 0.00 0.00 34.22 3.69
291 292 8.198778 CCTTCTACCTTAGATAAACAAGTCTCC 58.801 40.741 0.00 0.00 34.22 3.71
292 293 8.751242 ACCTTCTACCTTAGATAAACAAGTCTC 58.249 37.037 0.00 0.00 34.22 3.36
293 294 8.532819 CACCTTCTACCTTAGATAAACAAGTCT 58.467 37.037 0.00 0.00 34.22 3.24
294 295 8.529476 TCACCTTCTACCTTAGATAAACAAGTC 58.471 37.037 0.00 0.00 34.22 3.01
295 296 8.312564 GTCACCTTCTACCTTAGATAAACAAGT 58.687 37.037 0.00 0.00 34.22 3.16
296 297 8.532819 AGTCACCTTCTACCTTAGATAAACAAG 58.467 37.037 0.00 0.00 34.22 3.16
297 298 8.431910 AGTCACCTTCTACCTTAGATAAACAA 57.568 34.615 0.00 0.00 34.22 2.83
298 299 9.537852 TTAGTCACCTTCTACCTTAGATAAACA 57.462 33.333 0.00 0.00 34.22 2.83
299 300 9.800433 GTTAGTCACCTTCTACCTTAGATAAAC 57.200 37.037 0.00 0.00 34.22 2.01
300 301 8.680903 CGTTAGTCACCTTCTACCTTAGATAAA 58.319 37.037 0.00 0.00 34.22 1.40
301 302 7.201767 GCGTTAGTCACCTTCTACCTTAGATAA 60.202 40.741 0.00 0.00 34.22 1.75
302 303 6.261826 GCGTTAGTCACCTTCTACCTTAGATA 59.738 42.308 0.00 0.00 34.22 1.98
303 304 5.067544 GCGTTAGTCACCTTCTACCTTAGAT 59.932 44.000 0.00 0.00 34.22 1.98
304 305 4.397417 GCGTTAGTCACCTTCTACCTTAGA 59.603 45.833 0.00 0.00 0.00 2.10
305 306 4.157289 TGCGTTAGTCACCTTCTACCTTAG 59.843 45.833 0.00 0.00 0.00 2.18
306 307 4.081406 TGCGTTAGTCACCTTCTACCTTA 58.919 43.478 0.00 0.00 0.00 2.69
311 312 7.966246 TTTTTATTGCGTTAGTCACCTTCTA 57.034 32.000 0.00 0.00 0.00 2.10
337 338 6.707440 TTTGCTATTTTCTGACACCTGAAA 57.293 33.333 0.00 0.00 38.10 2.69
446 450 8.821686 AACCATATTTGGAATGTATCTCAACA 57.178 30.769 9.40 0.00 46.92 3.33
634 2913 3.127533 GGTGTCCGGAGCATGTGC 61.128 66.667 3.06 0.00 42.49 4.57
651 2930 1.403647 CCATGAATTGCAGCACACCTG 60.404 52.381 0.00 0.00 44.67 4.00
652 2931 0.892755 CCATGAATTGCAGCACACCT 59.107 50.000 0.00 0.00 0.00 4.00
654 2933 2.063266 CAACCATGAATTGCAGCACAC 58.937 47.619 0.00 0.00 0.00 3.82
655 2934 1.001068 CCAACCATGAATTGCAGCACA 59.999 47.619 0.00 0.00 0.00 4.57
656 2935 1.001181 ACCAACCATGAATTGCAGCAC 59.999 47.619 0.00 0.00 0.00 4.40
657 2936 1.340088 ACCAACCATGAATTGCAGCA 58.660 45.000 0.00 0.00 0.00 4.41
658 2937 2.754552 TCTACCAACCATGAATTGCAGC 59.245 45.455 0.00 0.00 0.00 5.25
659 2938 4.264253 TCTCTACCAACCATGAATTGCAG 58.736 43.478 0.00 0.00 0.00 4.41
682 2964 2.552315 TGACCGTTCTTTTTGAGATGCC 59.448 45.455 0.00 0.00 33.49 4.40
782 3064 3.310774 GTGACAGCTTATGTATGCCTGTG 59.689 47.826 0.00 0.00 44.17 3.66
783 3065 3.055167 TGTGACAGCTTATGTATGCCTGT 60.055 43.478 0.00 0.00 44.17 4.00
806 3088 2.586079 CTGACCGTAGCATGCCCG 60.586 66.667 15.66 16.91 0.00 6.13
809 3091 1.394917 CTTGAACTGACCGTAGCATGC 59.605 52.381 10.51 10.51 0.00 4.06
818 3100 4.036852 CCTTGGAGTTTTCTTGAACTGACC 59.963 45.833 0.00 0.00 39.84 4.02
826 3108 8.722394 GTTTCTACTATCCTTGGAGTTTTCTTG 58.278 37.037 0.00 0.00 0.00 3.02
832 3114 6.042781 TGTGTGTTTCTACTATCCTTGGAGTT 59.957 38.462 0.00 0.00 0.00 3.01
840 3122 9.680315 GAGTATGTATGTGTGTTTCTACTATCC 57.320 37.037 0.00 0.00 0.00 2.59
937 3226 3.524541 CACTGCTTTGTTTGGCTTTTCT 58.475 40.909 0.00 0.00 0.00 2.52
938 3227 2.609002 CCACTGCTTTGTTTGGCTTTTC 59.391 45.455 0.00 0.00 0.00 2.29
958 3248 3.696051 TCTATATATACACCCGCGTTCCC 59.304 47.826 4.92 0.00 0.00 3.97
1192 3482 2.599281 TGTTCCCGAGCGAGACCA 60.599 61.111 0.00 0.00 0.00 4.02
1198 3488 0.878523 TCTTGTTGTGTTCCCGAGCG 60.879 55.000 0.00 0.00 0.00 5.03
1200 3490 0.859232 CGTCTTGTTGTGTTCCCGAG 59.141 55.000 0.00 0.00 0.00 4.63
1210 3500 0.941463 AGCGTGAGAGCGTCTTGTTG 60.941 55.000 0.00 0.00 43.00 3.33
1215 3505 1.431440 GATGAGCGTGAGAGCGTCT 59.569 57.895 0.00 0.00 43.00 4.18
1244 3534 0.177141 TAGGCTTTCATCCGTTCGGG 59.823 55.000 11.37 0.00 37.02 5.14
1267 3557 3.308530 CGCAACAACAAAAGAATCCTCC 58.691 45.455 0.00 0.00 0.00 4.30
1403 3693 3.241530 TTGGCAGCCACCTCGTCT 61.242 61.111 15.89 0.00 30.78 4.18
1443 3733 3.179599 GCAATACAACAAACAAGTCACGC 59.820 43.478 0.00 0.00 0.00 5.34
1485 3775 2.417651 CCCACGCTCCGTCTAAACATAA 60.418 50.000 0.00 0.00 38.32 1.90
1501 3791 1.896660 CCACAACAACTCCCCCACG 60.897 63.158 0.00 0.00 0.00 4.94
1562 3852 2.479730 CGAGGTGACTGGCATGTACTAC 60.480 54.545 0.00 0.00 44.43 2.73
1563 3853 1.749063 CGAGGTGACTGGCATGTACTA 59.251 52.381 0.00 0.00 44.43 1.82
1564 3854 0.532573 CGAGGTGACTGGCATGTACT 59.467 55.000 0.00 0.00 44.43 2.73
1565 3855 3.050703 CGAGGTGACTGGCATGTAC 57.949 57.895 0.00 0.00 44.43 2.90
1572 3862 1.593196 TTCAAAAGCGAGGTGACTGG 58.407 50.000 0.00 0.00 44.43 4.00
1601 3892 3.223435 TCTCCCTTCTAGCGAAATCGAT 58.777 45.455 7.06 2.37 43.02 3.59
1628 3919 0.252284 AGCTTCTTCTTCCCCTCCGA 60.252 55.000 0.00 0.00 0.00 4.55
1638 3951 1.339535 GCCTACCAGCAAGCTTCTTCT 60.340 52.381 0.00 0.00 0.00 2.85
1654 3967 4.974933 AGATAGATGATGGGGTAGCCTA 57.025 45.455 11.48 4.89 0.00 3.93
1704 4041 2.324330 CGGCGAACTTGCATCACCA 61.324 57.895 0.00 0.00 36.28 4.17
1709 4046 0.605319 TTTCTCCGGCGAACTTGCAT 60.605 50.000 9.30 0.00 36.28 3.96
1983 4320 3.366476 CCTCCCTAATAACAGATCGCTCG 60.366 52.174 0.00 0.00 0.00 5.03
1984 4321 3.827302 TCCTCCCTAATAACAGATCGCTC 59.173 47.826 0.00 0.00 0.00 5.03
1985 4322 3.829601 CTCCTCCCTAATAACAGATCGCT 59.170 47.826 0.00 0.00 0.00 4.93
1996 4333 4.354208 TGTCTTCTTCCTCCTCCCTAAT 57.646 45.455 0.00 0.00 0.00 1.73
2002 4339 6.540551 GTCCAAATTATGTCTTCTTCCTCCTC 59.459 42.308 0.00 0.00 0.00 3.71
2024 4361 5.676331 GCGTTGGATCAAAAAGGAATAGTCC 60.676 44.000 0.00 0.00 45.35 3.85
2029 4366 4.280677 TCAAGCGTTGGATCAAAAAGGAAT 59.719 37.500 0.00 0.00 0.00 3.01
2043 4380 2.223203 GCAGGATCAATCTCAAGCGTTG 60.223 50.000 0.00 0.00 0.00 4.10
2072 4409 7.044052 CGACTGAAAATTTCTTTTGGAACAGTC 60.044 37.037 0.00 0.00 42.26 3.51
2110 4447 8.927411 AGATTGTAATATTTCTTTGGGAATGGG 58.073 33.333 0.00 0.00 33.53 4.00
2318 4833 3.101643 TGATATACAGCCTAGCGGGAT 57.898 47.619 2.95 0.00 37.23 3.85
2323 4838 5.240891 TCTGCAAATGATATACAGCCTAGC 58.759 41.667 0.00 0.00 0.00 3.42
2373 4888 6.343716 TCAACCACATGTGCAAAGAAATAT 57.656 33.333 20.81 0.00 0.00 1.28
2715 5254 0.517316 GTAGAGTGCGCACCAAAAGG 59.483 55.000 35.51 0.00 0.00 3.11
2725 5264 4.106197 GAGGTTGAACATAGTAGAGTGCG 58.894 47.826 0.00 0.00 0.00 5.34
2775 5314 3.318839 TGGCAAACAATTCCTCTCTGTTG 59.681 43.478 0.00 0.00 33.67 3.33
2864 5403 4.463186 AGAGAAGTTATTACACTCAGCCGT 59.537 41.667 10.16 0.00 34.61 5.68
2954 5493 7.827819 TCTCCGAATAGTTCAAACATAACAG 57.172 36.000 0.00 0.00 0.00 3.16
3065 5608 3.199727 GGGGCAATGTTGGGATTATTTGT 59.800 43.478 0.00 0.00 0.00 2.83
3128 5671 7.450074 TGGATAAACCATAGACACCATATCAC 58.550 38.462 0.00 0.00 44.64 3.06
3159 5702 6.869206 ACCATACACACCATAGACTACTTT 57.131 37.500 0.00 0.00 0.00 2.66
3161 5704 6.869206 AAACCATACACACCATAGACTACT 57.131 37.500 0.00 0.00 0.00 2.57
3248 5791 2.755650 AGTTATATGCGGGCTTCTTCG 58.244 47.619 0.00 0.00 0.00 3.79
3289 5832 6.978343 TCGGTGTCATCAAGGTTAAATTAG 57.022 37.500 0.00 0.00 0.00 1.73
3296 5839 5.528870 GAAAATTTCGGTGTCATCAAGGTT 58.471 37.500 0.00 0.00 0.00 3.50
3324 5867 4.081198 CCTAGAGCTTGTCTTTGTCAGGAT 60.081 45.833 0.00 0.00 36.64 3.24
3496 6048 2.364448 GAAGCGGAGGGGGAGACT 60.364 66.667 0.00 0.00 0.00 3.24
3525 6077 0.827089 TCGGTTGTAAGTCCACCCGA 60.827 55.000 0.00 0.00 41.73 5.14
3543 6095 5.440234 TCTGAACTTATAGATGAGCGGTC 57.560 43.478 7.89 7.89 0.00 4.79
3556 6108 6.859112 AGAAGTAATGAGGCTCTGAACTTA 57.141 37.500 20.84 8.54 0.00 2.24
3706 6258 7.669098 GTGACATGCACAATTTTTATGCTAAG 58.331 34.615 13.27 0.00 46.91 2.18
3707 6259 7.579589 GTGACATGCACAATTTTTATGCTAA 57.420 32.000 13.27 0.00 46.91 3.09
3799 6353 2.159099 GCCCGTCTGATTCTACACATGA 60.159 50.000 0.00 0.00 0.00 3.07
3810 6364 1.330655 CCCACTAGTGCCCGTCTGAT 61.331 60.000 17.86 0.00 0.00 2.90
3812 6366 2.227089 GACCCACTAGTGCCCGTCTG 62.227 65.000 17.86 1.75 0.00 3.51
3819 6373 1.550976 ACTAGCTTGACCCACTAGTGC 59.449 52.381 17.86 4.11 43.74 4.40
3829 6383 3.063588 GCCGTTGGATTTACTAGCTTGAC 59.936 47.826 1.04 0.00 0.00 3.18
3854 6408 7.002816 TGCTTTCACAACATCAAAATTGTTC 57.997 32.000 0.00 0.00 36.92 3.18
3904 6458 4.942944 TGTACCAAAGAGAGTGATCCCTA 58.057 43.478 0.00 0.00 0.00 3.53
3905 6459 3.791320 TGTACCAAAGAGAGTGATCCCT 58.209 45.455 0.00 0.00 0.00 4.20
3932 6486 5.552870 TTGCCATTTAGATAGGAGAGTCC 57.447 43.478 0.00 0.00 36.58 3.85
3935 6489 7.278875 ACTTCTTTGCCATTTAGATAGGAGAG 58.721 38.462 0.00 0.00 0.00 3.20
3954 6508 9.764363 GAAAAGGTGGAAATATGAAAACTTCTT 57.236 29.630 0.00 0.00 0.00 2.52
3965 6519 9.868160 CCCTCTAATAAGAAAAGGTGGAAATAT 57.132 33.333 0.00 0.00 0.00 1.28
3997 6551 4.024893 CCCCGTTTGATAGATCAACAATCG 60.025 45.833 4.42 15.90 45.63 3.34
4000 6554 4.295141 ACCCCGTTTGATAGATCAACAA 57.705 40.909 4.42 0.00 45.63 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.