Multiple sequence alignment - TraesCS7B01G080900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G080900 chr7B 100.000 1613 0 0 1531 3143 91212764 91211152 0.000000e+00 2979.0
1 TraesCS7B01G080900 chr7B 100.000 1171 0 0 1 1171 91214294 91213124 0.000000e+00 2163.0
2 TraesCS7B01G080900 chr7B 93.333 165 11 0 216 380 502893725 502893561 1.070000e-60 244.0
3 TraesCS7B01G080900 chr7B 100.000 116 0 0 3749 3864 91210546 91210431 8.410000e-52 215.0
4 TraesCS7B01G080900 chr7D 97.387 1569 38 2 1531 3098 129799144 129797578 0.000000e+00 2667.0
5 TraesCS7B01G080900 chr7D 90.726 248 13 5 828 1065 129799884 129799637 4.820000e-84 322.0
6 TraesCS7B01G080900 chr7D 95.455 110 5 0 3755 3864 129797107 129796998 3.970000e-40 176.0
7 TraesCS7B01G080900 chr7A 97.401 1462 38 0 1531 2992 128914806 128913345 0.000000e+00 2490.0
8 TraesCS7B01G080900 chr7A 91.398 279 14 5 828 1096 128915534 128915256 1.310000e-99 374.0
9 TraesCS7B01G080900 chr7A 87.500 288 25 5 402 678 128915887 128915600 4.820000e-84 322.0
10 TraesCS7B01G080900 chr7A 97.122 139 4 0 3005 3143 128913359 128913221 6.450000e-58 235.0
11 TraesCS7B01G080900 chr7A 87.192 203 22 3 202 401 32776683 32776482 1.080000e-55 228.0
12 TraesCS7B01G080900 chr7A 90.291 103 7 3 8 109 128916084 128915984 8.710000e-27 132.0
13 TraesCS7B01G080900 chr7A 96.491 57 2 0 124 180 128915944 128915888 1.140000e-15 95.3
14 TraesCS7B01G080900 chr3B 94.012 167 10 0 215 381 152215466 152215300 1.780000e-63 254.0
15 TraesCS7B01G080900 chr3B 95.541 157 7 0 216 372 540175090 540174934 6.410000e-63 252.0
16 TraesCS7B01G080900 chr2D 92.571 175 11 2 208 382 305515036 305514864 2.300000e-62 250.0
17 TraesCS7B01G080900 chr6B 93.491 169 8 3 205 372 131720743 131720909 8.290000e-62 248.0
18 TraesCS7B01G080900 chr6B 93.902 164 10 0 209 372 601199427 601199590 8.290000e-62 248.0
19 TraesCS7B01G080900 chr3D 91.908 173 12 2 200 372 528190508 528190678 1.390000e-59 241.0
20 TraesCS7B01G080900 chr5D 90.217 184 14 3 200 380 498721890 498722072 1.790000e-58 237.0
21 TraesCS7B01G080900 chr2A 86.735 98 12 1 12 109 31006495 31006591 1.470000e-19 108.0
22 TraesCS7B01G080900 chr2A 87.368 95 10 2 16 109 646627026 646626933 1.470000e-19 108.0
23 TraesCS7B01G080900 chr2A 85.106 94 12 2 17 109 686692371 686692279 1.140000e-15 95.3
24 TraesCS7B01G080900 chr3A 85.263 95 11 3 16 109 692009442 692009350 1.140000e-15 95.3
25 TraesCS7B01G080900 chr3A 84.375 96 11 4 16 109 245836 245743 1.480000e-14 91.6
26 TraesCS7B01G080900 chr2B 83.495 103 15 2 8 109 46825117 46825016 1.140000e-15 95.3
27 TraesCS7B01G080900 chr1B 83.673 98 13 3 15 110 488476241 488476145 5.320000e-14 89.8
28 TraesCS7B01G080900 chr1B 80.734 109 17 2 473 579 666085531 666085425 8.900000e-12 82.4
29 TraesCS7B01G080900 chr5A 83.871 93 13 2 16 107 663231792 663231883 1.910000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G080900 chr7B 91210431 91214294 3863 True 1785.666667 2979 100.000000 1 3864 3 chr7B.!!$R2 3863
1 TraesCS7B01G080900 chr7D 129796998 129799884 2886 True 1055.000000 2667 94.522667 828 3864 3 chr7D.!!$R1 3036
2 TraesCS7B01G080900 chr7A 128913221 128916084 2863 True 608.050000 2490 93.367167 8 3143 6 chr7A.!!$R2 3135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.033504 ACCACCTAGCAACGACTGTG 59.966 55.0 0.00 0.0 0.00 3.66 F
780 817 0.035056 CGGATCCCCTGTTTGAAGCT 60.035 55.0 6.06 0.0 0.00 3.74 F
955 1018 0.043334 CTCCTCCCCTCTCTTTCCCA 59.957 60.0 0.00 0.0 0.00 4.37 F
2383 2820 0.179129 CATTGATCGGGTGCCTTTGC 60.179 55.0 0.00 0.0 38.26 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2535 1.319541 TCTCGATCATCCCCTCGAAC 58.680 55.000 0.00 0.0 42.73 3.95 R
2530 2967 1.425066 TGAACTCCTTCCTGTGGCAAT 59.575 47.619 0.00 0.0 0.00 3.56 R
2854 3291 0.984995 GGTAGCTTGTTCACCCTCCT 59.015 55.000 0.00 0.0 0.00 3.69 R
3789 4226 0.321671 TCTTCAGTTTCCTCGGCCAG 59.678 55.000 2.24 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.093322 ACTTTCAAACTATTCATCATCTGGC 57.907 36.000 0.00 0.00 0.00 4.85
43 44 6.660521 ACTTTCAAACTATTCATCATCTGGCA 59.339 34.615 0.00 0.00 0.00 4.92
48 49 1.315690 ATTCATCATCTGGCAAGGCG 58.684 50.000 0.00 0.00 0.00 5.52
53 54 1.819632 CATCTGGCAAGGCGGTACC 60.820 63.158 0.16 0.16 39.61 3.34
56 57 1.602323 CTGGCAAGGCGGTACCAAA 60.602 57.895 13.54 0.00 43.14 3.28
91 92 8.488651 AGTAAAAATTACATTCAGGTCCGTAG 57.511 34.615 3.37 0.00 0.00 3.51
109 110 0.603569 AGACCACCTAGCAACGACTG 59.396 55.000 0.00 0.00 0.00 3.51
110 111 0.317479 GACCACCTAGCAACGACTGT 59.683 55.000 0.00 0.00 0.00 3.55
111 112 0.033504 ACCACCTAGCAACGACTGTG 59.966 55.000 0.00 0.00 0.00 3.66
115 141 1.372997 CTAGCAACGACTGTGCCGT 60.373 57.895 0.00 0.00 42.61 5.68
122 148 2.354305 GACTGTGCCGTCGTCGTT 60.354 61.111 0.71 0.00 35.01 3.85
132 158 3.998672 TCGTCGTTGCCCCTCCAC 61.999 66.667 0.00 0.00 0.00 4.02
136 162 3.953775 CGTTGCCCCTCCACCACT 61.954 66.667 0.00 0.00 0.00 4.00
180 206 5.883115 TGTTTCTCAACCTGTGTATTGTCAA 59.117 36.000 0.00 0.00 31.02 3.18
182 208 5.290493 TCTCAACCTGTGTATTGTCAACT 57.710 39.130 0.00 0.00 0.00 3.16
183 209 5.297547 TCTCAACCTGTGTATTGTCAACTC 58.702 41.667 0.00 0.00 0.00 3.01
184 210 4.385825 TCAACCTGTGTATTGTCAACTCC 58.614 43.478 0.00 0.00 0.00 3.85
185 211 4.102524 TCAACCTGTGTATTGTCAACTCCT 59.897 41.667 0.00 0.00 0.00 3.69
186 212 4.008074 ACCTGTGTATTGTCAACTCCTG 57.992 45.455 0.00 0.00 0.00 3.86
187 213 2.744202 CCTGTGTATTGTCAACTCCTGC 59.256 50.000 0.00 0.00 0.00 4.85
188 214 3.402110 CTGTGTATTGTCAACTCCTGCA 58.598 45.455 0.00 0.00 0.00 4.41
189 215 3.138304 TGTGTATTGTCAACTCCTGCAC 58.862 45.455 0.00 0.00 0.00 4.57
190 216 3.181455 TGTGTATTGTCAACTCCTGCACT 60.181 43.478 6.66 0.00 0.00 4.40
191 217 4.039852 TGTGTATTGTCAACTCCTGCACTA 59.960 41.667 6.66 0.00 0.00 2.74
192 218 5.178797 GTGTATTGTCAACTCCTGCACTAT 58.821 41.667 0.00 0.00 0.00 2.12
193 219 5.643777 GTGTATTGTCAACTCCTGCACTATT 59.356 40.000 0.00 0.00 0.00 1.73
194 220 6.149474 GTGTATTGTCAACTCCTGCACTATTT 59.851 38.462 0.00 0.00 0.00 1.40
195 221 5.633830 ATTGTCAACTCCTGCACTATTTG 57.366 39.130 0.00 0.00 0.00 2.32
196 222 4.350368 TGTCAACTCCTGCACTATTTGA 57.650 40.909 0.00 0.00 0.00 2.69
197 223 4.910195 TGTCAACTCCTGCACTATTTGAT 58.090 39.130 0.00 0.00 0.00 2.57
198 224 5.316167 TGTCAACTCCTGCACTATTTGATT 58.684 37.500 0.00 0.00 0.00 2.57
199 225 5.769662 TGTCAACTCCTGCACTATTTGATTT 59.230 36.000 0.00 0.00 0.00 2.17
200 226 6.939730 TGTCAACTCCTGCACTATTTGATTTA 59.060 34.615 0.00 0.00 0.00 1.40
201 227 7.446931 TGTCAACTCCTGCACTATTTGATTTAA 59.553 33.333 0.00 0.00 0.00 1.52
202 228 8.296713 GTCAACTCCTGCACTATTTGATTTAAA 58.703 33.333 0.00 0.00 0.00 1.52
203 229 8.855110 TCAACTCCTGCACTATTTGATTTAAAA 58.145 29.630 0.00 0.00 0.00 1.52
204 230 9.474920 CAACTCCTGCACTATTTGATTTAAAAA 57.525 29.630 0.00 0.00 0.00 1.94
226 252 5.952347 AAAATAGAACATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
227 253 5.952347 AAATAGAACATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
228 254 5.532664 AATAGAACATACTCCCTCCGTTC 57.467 43.478 0.00 0.00 36.95 3.95
229 255 2.108970 AGAACATACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 37.31 3.62
230 256 2.108970 GAACATACTCCCTCCGTTCCT 58.891 52.381 0.00 0.00 31.82 3.36
231 257 3.053095 AGAACATACTCCCTCCGTTCCTA 60.053 47.826 0.00 0.00 37.31 2.94
232 258 3.393426 ACATACTCCCTCCGTTCCTAA 57.607 47.619 0.00 0.00 0.00 2.69
233 259 3.716431 ACATACTCCCTCCGTTCCTAAA 58.284 45.455 0.00 0.00 0.00 1.85
234 260 4.296056 ACATACTCCCTCCGTTCCTAAAT 58.704 43.478 0.00 0.00 0.00 1.40
235 261 5.461327 ACATACTCCCTCCGTTCCTAAATA 58.539 41.667 0.00 0.00 0.00 1.40
236 262 6.082707 ACATACTCCCTCCGTTCCTAAATAT 58.917 40.000 0.00 0.00 0.00 1.28
237 263 7.243824 ACATACTCCCTCCGTTCCTAAATATA 58.756 38.462 0.00 0.00 0.00 0.86
238 264 7.731688 ACATACTCCCTCCGTTCCTAAATATAA 59.268 37.037 0.00 0.00 0.00 0.98
239 265 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
240 266 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
241 267 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
242 268 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
243 269 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
244 270 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
245 271 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
246 272 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
273 299 8.794553 AGAGATTCCACTATAAACTACATACGG 58.205 37.037 0.00 0.00 0.00 4.02
274 300 8.701908 AGATTCCACTATAAACTACATACGGA 57.298 34.615 0.00 0.00 0.00 4.69
275 301 8.794553 AGATTCCACTATAAACTACATACGGAG 58.205 37.037 0.00 0.00 0.00 4.63
276 302 6.323203 TCCACTATAAACTACATACGGAGC 57.677 41.667 0.00 0.00 0.00 4.70
277 303 5.829391 TCCACTATAAACTACATACGGAGCA 59.171 40.000 0.00 0.00 0.00 4.26
278 304 6.321945 TCCACTATAAACTACATACGGAGCAA 59.678 38.462 0.00 0.00 0.00 3.91
279 305 6.982141 CCACTATAAACTACATACGGAGCAAA 59.018 38.462 0.00 0.00 0.00 3.68
280 306 7.493320 CCACTATAAACTACATACGGAGCAAAA 59.507 37.037 0.00 0.00 0.00 2.44
281 307 9.042008 CACTATAAACTACATACGGAGCAAAAT 57.958 33.333 0.00 0.00 0.00 1.82
282 308 9.042008 ACTATAAACTACATACGGAGCAAAATG 57.958 33.333 0.00 0.00 0.00 2.32
283 309 9.256477 CTATAAACTACATACGGAGCAAAATGA 57.744 33.333 0.00 0.00 0.00 2.57
284 310 6.422776 AAACTACATACGGAGCAAAATGAG 57.577 37.500 0.00 0.00 0.00 2.90
285 311 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
286 312 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
287 313 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
288 314 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
289 315 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
290 316 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
291 317 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
292 318 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
293 319 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
294 320 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
295 321 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
308 334 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
309 335 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
310 336 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
320 346 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
321 347 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
326 352 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
327 353 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
328 354 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
329 355 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
330 356 7.426410 CATCTATATACATCCGTATGTGGTCC 58.574 42.308 3.56 0.00 45.99 4.46
331 357 6.486941 TCTATATACATCCGTATGTGGTCCA 58.513 40.000 3.56 0.00 45.99 4.02
332 358 7.123383 TCTATATACATCCGTATGTGGTCCAT 58.877 38.462 3.56 0.00 45.99 3.41
333 359 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
334 360 7.727578 ATATACATCCGTATGTGGTCCATAA 57.272 36.000 3.56 0.00 45.99 1.90
335 361 4.974645 ACATCCGTATGTGGTCCATAAT 57.025 40.909 0.00 0.00 44.79 1.28
336 362 7.727578 ATACATCCGTATGTGGTCCATAATA 57.272 36.000 3.56 0.00 45.99 0.98
337 363 6.037786 ACATCCGTATGTGGTCCATAATAG 57.962 41.667 0.00 0.00 44.79 1.73
338 364 5.778241 ACATCCGTATGTGGTCCATAATAGA 59.222 40.000 0.00 0.00 44.79 1.98
339 365 6.269077 ACATCCGTATGTGGTCCATAATAGAA 59.731 38.462 0.00 0.00 44.79 2.10
340 366 6.928348 TCCGTATGTGGTCCATAATAGAAT 57.072 37.500 0.00 0.00 37.77 2.40
341 367 6.931838 TCCGTATGTGGTCCATAATAGAATC 58.068 40.000 0.00 0.00 37.77 2.52
342 368 6.724441 TCCGTATGTGGTCCATAATAGAATCT 59.276 38.462 0.00 0.00 37.77 2.40
343 369 7.036220 CCGTATGTGGTCCATAATAGAATCTC 58.964 42.308 0.00 0.00 37.77 2.75
344 370 7.093727 CCGTATGTGGTCCATAATAGAATCTCT 60.094 40.741 0.00 0.00 37.77 3.10
345 371 8.957466 CGTATGTGGTCCATAATAGAATCTCTA 58.043 37.037 0.00 0.00 37.77 2.43
347 373 8.727100 ATGTGGTCCATAATAGAATCTCTACA 57.273 34.615 0.00 0.00 28.73 2.74
348 374 8.547481 TGTGGTCCATAATAGAATCTCTACAA 57.453 34.615 0.00 0.00 30.79 2.41
349 375 8.988060 TGTGGTCCATAATAGAATCTCTACAAA 58.012 33.333 0.00 0.00 30.79 2.83
350 376 9.482627 GTGGTCCATAATAGAATCTCTACAAAG 57.517 37.037 0.00 0.00 30.79 2.77
351 377 9.434275 TGGTCCATAATAGAATCTCTACAAAGA 57.566 33.333 0.00 0.00 30.79 2.52
352 378 9.699703 GGTCCATAATAGAATCTCTACAAAGAC 57.300 37.037 0.00 0.00 30.79 3.01
390 416 8.246430 ACAGAGGAAATATATAACTTCGACCA 57.754 34.615 0.00 0.00 0.00 4.02
391 417 8.701895 ACAGAGGAAATATATAACTTCGACCAA 58.298 33.333 0.00 0.00 0.00 3.67
392 418 9.542462 CAGAGGAAATATATAACTTCGACCAAA 57.458 33.333 0.00 0.00 0.00 3.28
393 419 9.543783 AGAGGAAATATATAACTTCGACCAAAC 57.456 33.333 0.00 0.00 0.00 2.93
394 420 9.321562 GAGGAAATATATAACTTCGACCAAACA 57.678 33.333 0.00 0.00 0.00 2.83
395 421 9.847224 AGGAAATATATAACTTCGACCAAACAT 57.153 29.630 0.00 0.00 0.00 2.71
396 422 9.878599 GGAAATATATAACTTCGACCAAACATG 57.121 33.333 0.00 0.00 0.00 3.21
400 426 3.602390 AACTTCGACCAAACATGAACG 57.398 42.857 0.00 0.00 0.00 3.95
401 427 1.263217 ACTTCGACCAAACATGAACGC 59.737 47.619 0.00 0.00 0.00 4.84
402 428 0.589223 TTCGACCAAACATGAACGCC 59.411 50.000 0.00 0.00 0.00 5.68
403 429 0.533085 TCGACCAAACATGAACGCCA 60.533 50.000 0.00 0.00 0.00 5.69
404 430 0.521291 CGACCAAACATGAACGCCAT 59.479 50.000 0.00 0.00 35.44 4.40
409 435 3.128589 ACCAAACATGAACGCCATACATC 59.871 43.478 0.00 0.00 33.31 3.06
415 441 0.570734 GAACGCCATACATCGTCACG 59.429 55.000 0.00 0.00 38.03 4.35
422 448 2.478879 CCATACATCGTCACGTAGCACA 60.479 50.000 0.00 0.00 0.00 4.57
425 451 1.067846 ACATCGTCACGTAGCACACAT 60.068 47.619 0.00 0.00 0.00 3.21
444 470 6.016860 CACACATGGTATGAACCTCCATATTG 60.017 42.308 0.00 0.00 46.91 1.90
454 480 5.248020 TGAACCTCCATATTGGCATTTTGTT 59.752 36.000 0.00 0.00 37.47 2.83
461 487 5.294799 CCATATTGGCATTTTGTTGGTCATG 59.705 40.000 0.00 0.00 0.00 3.07
469 495 5.336690 GCATTTTGTTGGTCATGTGATACCT 60.337 40.000 3.24 0.00 36.67 3.08
471 497 6.723298 TTTTGTTGGTCATGTGATACCTTT 57.277 33.333 3.24 0.00 36.67 3.11
541 570 5.043737 TGTATATGGGGTAAAAGCTCCAC 57.956 43.478 0.00 0.00 31.48 4.02
542 571 4.724798 TGTATATGGGGTAAAAGCTCCACT 59.275 41.667 0.00 0.00 31.48 4.00
552 581 2.575805 AAGCTCCACTTTCCCTTCTG 57.424 50.000 0.00 0.00 33.71 3.02
553 582 0.037447 AGCTCCACTTTCCCTTCTGC 59.963 55.000 0.00 0.00 0.00 4.26
565 600 2.305927 TCCCTTCTGCCAGTAAAAGAGG 59.694 50.000 0.00 0.00 0.00 3.69
581 616 4.909696 AAGAGGTGTATGATCAGACTCG 57.090 45.455 20.42 0.00 31.89 4.18
586 621 1.683385 TGTATGATCAGACTCGGCCTG 59.317 52.381 20.42 0.00 0.00 4.85
594 629 0.603975 AGACTCGGCCTGAAGCAAAC 60.604 55.000 0.00 0.00 46.50 2.93
598 633 2.290323 ACTCGGCCTGAAGCAAACTTAT 60.290 45.455 0.00 0.00 46.50 1.73
635 672 2.941720 GCAGATTGTTGCTAGAGGAAGG 59.058 50.000 0.00 0.00 40.89 3.46
641 678 2.038557 TGTTGCTAGAGGAAGGTCCAAC 59.961 50.000 0.00 0.00 39.61 3.77
660 697 0.652592 CGATTTCCGGCAGACATGAC 59.347 55.000 0.00 0.00 33.91 3.06
679 716 2.813908 GGCCGTGCCGTCTGTTAG 60.814 66.667 0.00 0.00 39.62 2.34
681 718 1.153628 GCCGTGCCGTCTGTTAGAT 60.154 57.895 0.00 0.00 0.00 1.98
682 719 0.739813 GCCGTGCCGTCTGTTAGATT 60.740 55.000 0.00 0.00 0.00 2.40
683 720 1.470285 GCCGTGCCGTCTGTTAGATTA 60.470 52.381 0.00 0.00 0.00 1.75
684 721 2.460918 CCGTGCCGTCTGTTAGATTAG 58.539 52.381 0.00 0.00 0.00 1.73
685 722 2.098607 CCGTGCCGTCTGTTAGATTAGA 59.901 50.000 0.00 0.00 0.00 2.10
686 723 3.428452 CCGTGCCGTCTGTTAGATTAGAA 60.428 47.826 0.00 0.00 0.00 2.10
687 724 4.171005 CGTGCCGTCTGTTAGATTAGAAA 58.829 43.478 0.00 0.00 0.00 2.52
688 725 4.624024 CGTGCCGTCTGTTAGATTAGAAAA 59.376 41.667 0.00 0.00 0.00 2.29
689 726 5.220228 CGTGCCGTCTGTTAGATTAGAAAAG 60.220 44.000 0.00 0.00 0.00 2.27
690 727 5.867716 GTGCCGTCTGTTAGATTAGAAAAGA 59.132 40.000 0.00 0.00 0.00 2.52
691 728 6.367969 GTGCCGTCTGTTAGATTAGAAAAGAA 59.632 38.462 0.00 0.00 0.00 2.52
692 729 6.932400 TGCCGTCTGTTAGATTAGAAAAGAAA 59.068 34.615 0.00 0.00 0.00 2.52
693 730 7.442969 TGCCGTCTGTTAGATTAGAAAAGAAAA 59.557 33.333 0.00 0.00 0.00 2.29
694 731 8.287503 GCCGTCTGTTAGATTAGAAAAGAAAAA 58.712 33.333 0.00 0.00 0.00 1.94
695 732 9.813080 CCGTCTGTTAGATTAGAAAAGAAAAAG 57.187 33.333 0.00 0.00 0.00 2.27
696 733 9.813080 CGTCTGTTAGATTAGAAAAGAAAAAGG 57.187 33.333 0.00 0.00 0.00 3.11
707 744 9.869757 TTAGAAAAGAAAAAGGAAAAAGGACAG 57.130 29.630 0.00 0.00 0.00 3.51
708 745 6.818644 AGAAAAGAAAAAGGAAAAAGGACAGC 59.181 34.615 0.00 0.00 0.00 4.40
709 746 4.672587 AGAAAAAGGAAAAAGGACAGCC 57.327 40.909 0.00 0.00 0.00 4.85
710 747 3.068165 AGAAAAAGGAAAAAGGACAGCCG 59.932 43.478 0.00 0.00 39.96 5.52
711 748 2.067365 AAAGGAAAAAGGACAGCCGT 57.933 45.000 0.00 0.00 39.96 5.68
712 749 2.943036 AAGGAAAAAGGACAGCCGTA 57.057 45.000 0.00 0.00 39.96 4.02
713 750 2.474410 AGGAAAAAGGACAGCCGTAG 57.526 50.000 0.00 0.00 39.96 3.51
730 767 4.713824 CGTAGGATGAAGTGGAAGTACA 57.286 45.455 0.00 0.00 0.00 2.90
731 768 4.673441 CGTAGGATGAAGTGGAAGTACAG 58.327 47.826 0.00 0.00 0.00 2.74
732 769 4.398358 CGTAGGATGAAGTGGAAGTACAGA 59.602 45.833 0.00 0.00 0.00 3.41
733 770 5.067936 CGTAGGATGAAGTGGAAGTACAGAT 59.932 44.000 0.00 0.00 0.00 2.90
734 771 5.350504 AGGATGAAGTGGAAGTACAGATG 57.649 43.478 0.00 0.00 0.00 2.90
735 772 4.163078 AGGATGAAGTGGAAGTACAGATGG 59.837 45.833 0.00 0.00 0.00 3.51
736 773 4.162320 GGATGAAGTGGAAGTACAGATGGA 59.838 45.833 0.00 0.00 0.00 3.41
737 774 5.338381 GGATGAAGTGGAAGTACAGATGGAA 60.338 44.000 0.00 0.00 0.00 3.53
738 775 5.152623 TGAAGTGGAAGTACAGATGGAAG 57.847 43.478 0.00 0.00 0.00 3.46
739 776 3.618690 AGTGGAAGTACAGATGGAAGC 57.381 47.619 0.00 0.00 0.00 3.86
740 777 2.906389 AGTGGAAGTACAGATGGAAGCA 59.094 45.455 0.00 0.00 0.00 3.91
741 778 3.521126 AGTGGAAGTACAGATGGAAGCAT 59.479 43.478 0.00 0.00 0.00 3.79
742 779 3.624861 GTGGAAGTACAGATGGAAGCATG 59.375 47.826 0.00 0.00 0.00 4.06
743 780 3.209410 GGAAGTACAGATGGAAGCATGG 58.791 50.000 0.00 0.00 0.00 3.66
744 781 3.209410 GAAGTACAGATGGAAGCATGGG 58.791 50.000 0.00 0.00 0.00 4.00
745 782 2.481441 AGTACAGATGGAAGCATGGGA 58.519 47.619 0.00 0.00 0.00 4.37
746 783 2.846206 AGTACAGATGGAAGCATGGGAA 59.154 45.455 0.00 0.00 0.00 3.97
747 784 2.431954 ACAGATGGAAGCATGGGAAG 57.568 50.000 0.00 0.00 0.00 3.46
748 785 1.637553 ACAGATGGAAGCATGGGAAGT 59.362 47.619 0.00 0.00 0.00 3.01
749 786 2.022195 CAGATGGAAGCATGGGAAGTG 58.978 52.381 0.00 0.00 0.00 3.16
750 787 1.918262 AGATGGAAGCATGGGAAGTGA 59.082 47.619 0.00 0.00 0.00 3.41
751 788 2.092538 AGATGGAAGCATGGGAAGTGAG 60.093 50.000 0.00 0.00 0.00 3.51
752 789 0.322816 TGGAAGCATGGGAAGTGAGC 60.323 55.000 0.00 0.00 0.00 4.26
753 790 0.322816 GGAAGCATGGGAAGTGAGCA 60.323 55.000 0.00 0.00 0.00 4.26
754 791 1.093159 GAAGCATGGGAAGTGAGCAG 58.907 55.000 0.00 0.00 0.00 4.24
755 792 0.323178 AAGCATGGGAAGTGAGCAGG 60.323 55.000 0.00 0.00 0.00 4.85
756 793 2.413142 GCATGGGAAGTGAGCAGGC 61.413 63.158 0.00 0.00 0.00 4.85
757 794 1.001764 CATGGGAAGTGAGCAGGCA 60.002 57.895 0.00 0.00 0.00 4.75
758 795 0.609957 CATGGGAAGTGAGCAGGCAA 60.610 55.000 0.00 0.00 0.00 4.52
759 796 0.323178 ATGGGAAGTGAGCAGGCAAG 60.323 55.000 0.00 0.00 0.00 4.01
760 797 2.338785 GGGAAGTGAGCAGGCAAGC 61.339 63.158 0.00 0.00 0.00 4.01
761 798 2.338785 GGAAGTGAGCAGGCAAGCC 61.339 63.158 2.02 2.02 34.23 4.35
762 799 2.670934 AAGTGAGCAGGCAAGCCG 60.671 61.111 5.28 2.12 41.95 5.52
763 800 4.711949 AGTGAGCAGGCAAGCCGG 62.712 66.667 6.88 6.88 41.95 6.13
764 801 4.704833 GTGAGCAGGCAAGCCGGA 62.705 66.667 15.46 0.00 41.95 5.14
765 802 3.720601 TGAGCAGGCAAGCCGGAT 61.721 61.111 15.46 8.74 41.95 4.18
766 803 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
767 804 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
769 806 4.883354 CAGGCAAGCCGGATCCCC 62.883 72.222 5.05 2.27 41.95 4.81
771 808 4.883354 GGCAAGCCGGATCCCCTG 62.883 72.222 5.05 0.00 0.00 4.45
772 809 4.115199 GCAAGCCGGATCCCCTGT 62.115 66.667 5.05 0.00 0.00 4.00
773 810 2.677228 CAAGCCGGATCCCCTGTT 59.323 61.111 5.05 0.00 0.00 3.16
774 811 1.000896 CAAGCCGGATCCCCTGTTT 60.001 57.895 5.05 0.00 0.00 2.83
775 812 1.000896 AAGCCGGATCCCCTGTTTG 60.001 57.895 5.05 0.00 0.00 2.93
776 813 1.497309 AAGCCGGATCCCCTGTTTGA 61.497 55.000 5.05 0.00 0.00 2.69
777 814 1.001393 GCCGGATCCCCTGTTTGAA 60.001 57.895 5.05 0.00 0.00 2.69
778 815 1.032114 GCCGGATCCCCTGTTTGAAG 61.032 60.000 5.05 0.00 0.00 3.02
779 816 1.032114 CCGGATCCCCTGTTTGAAGC 61.032 60.000 6.06 0.00 0.00 3.86
780 817 0.035056 CGGATCCCCTGTTTGAAGCT 60.035 55.000 6.06 0.00 0.00 3.74
781 818 1.467920 GGATCCCCTGTTTGAAGCTG 58.532 55.000 0.00 0.00 0.00 4.24
782 819 0.813821 GATCCCCTGTTTGAAGCTGC 59.186 55.000 0.00 0.00 0.00 5.25
783 820 0.962356 ATCCCCTGTTTGAAGCTGCG 60.962 55.000 0.00 0.00 0.00 5.18
784 821 1.600636 CCCCTGTTTGAAGCTGCGA 60.601 57.895 0.00 0.00 0.00 5.10
785 822 1.576421 CCCTGTTTGAAGCTGCGAC 59.424 57.895 0.00 0.00 0.00 5.19
786 823 1.205064 CCTGTTTGAAGCTGCGACG 59.795 57.895 0.00 0.00 0.00 5.12
787 824 1.205064 CTGTTTGAAGCTGCGACGG 59.795 57.895 0.00 0.00 0.00 4.79
788 825 2.127232 GTTTGAAGCTGCGACGGC 60.127 61.111 0.00 2.87 40.52 5.68
789 826 3.711842 TTTGAAGCTGCGACGGCG 61.712 61.111 6.12 6.12 44.10 6.46
814 851 4.008933 GACCTGCGACCTGCCTGT 62.009 66.667 0.00 0.00 45.60 4.00
817 854 4.694233 CTGCGACCTGCCTGTGCT 62.694 66.667 0.00 0.00 45.60 4.40
820 857 2.510238 CGACCTGCCTGTGCTAGC 60.510 66.667 8.10 8.10 38.71 3.42
821 858 2.665000 GACCTGCCTGTGCTAGCA 59.335 61.111 14.93 14.93 38.71 3.49
822 859 1.743252 GACCTGCCTGTGCTAGCAC 60.743 63.158 35.76 35.76 46.33 4.40
945 1008 4.924187 CCGCCGATCTCCTCCCCT 62.924 72.222 0.00 0.00 0.00 4.79
949 1012 1.850549 CCGATCTCCTCCCCTCTCT 59.149 63.158 0.00 0.00 0.00 3.10
955 1018 0.043334 CTCCTCCCCTCTCTTTCCCA 59.957 60.000 0.00 0.00 0.00 4.37
966 1029 2.030027 TCTTTCCCAAGAGGCTGAGA 57.970 50.000 0.00 0.00 33.80 3.27
1912 2349 1.987855 CAAGTACCTCCCCGCTCCA 60.988 63.158 0.00 0.00 0.00 3.86
2051 2488 1.653151 GGTCACCTATTCGACCTTGC 58.347 55.000 0.00 0.00 46.83 4.01
2053 2490 2.429610 GGTCACCTATTCGACCTTGCTA 59.570 50.000 0.00 0.00 46.83 3.49
2098 2535 3.499918 AGATGAAGGAAGCGTTTGAACTG 59.500 43.478 0.00 0.00 0.00 3.16
2199 2636 2.431683 GCAGGTGGAGAAGGCACA 59.568 61.111 0.00 0.00 0.00 4.57
2314 2751 2.036346 GGAGAATGCAAAGCTGGTGTTT 59.964 45.455 0.00 0.00 0.00 2.83
2383 2820 0.179129 CATTGATCGGGTGCCTTTGC 60.179 55.000 0.00 0.00 38.26 3.68
2512 2949 3.857038 GGGCGGATGGCGGAAGTA 61.857 66.667 0.00 0.00 44.92 2.24
2530 2967 2.912956 AGTAATGGACTTGCTTGGGAGA 59.087 45.455 0.00 0.00 33.13 3.71
2537 2974 0.529378 CTTGCTTGGGAGATTGCCAC 59.471 55.000 0.00 0.00 37.69 5.01
2590 3027 7.394641 AGCTATCGGATTGTGATGAATACTCTA 59.605 37.037 0.00 0.00 0.00 2.43
2788 3225 1.341209 GCTAGTTGTTGGGCAAAGCTT 59.659 47.619 0.00 0.00 37.73 3.74
2854 3291 9.547753 GTTGAGCTTCTGGATATCTTAATTACA 57.452 33.333 2.05 0.00 0.00 2.41
2869 3306 2.561478 TTACAGGAGGGTGAACAAGC 57.439 50.000 0.00 0.00 0.00 4.01
2885 3322 0.321122 AAGCTACCTCAGTGCAGCAC 60.321 55.000 18.55 18.55 36.47 4.40
2951 3388 4.747108 CAGGTATGAAGATCGCTCGAAAAT 59.253 41.667 0.00 0.00 0.00 1.82
3041 3478 0.542702 CAGGCTTGACCCCAAATGGT 60.543 55.000 0.00 0.00 42.79 3.55
3107 3544 1.574702 GCAACAGGACCTTGCGTACC 61.575 60.000 2.41 0.00 35.04 3.34
3135 3572 1.671379 GGACAAGGACGGCAACCTC 60.671 63.158 0.00 0.00 36.67 3.85
3773 4210 3.304861 GGGTTTTGTGCCCGTAGTAAAAG 60.305 47.826 0.00 0.00 36.30 2.27
3785 4222 6.471198 GCCCGTAGTAAAAGTAATTTGCATTC 59.529 38.462 0.00 0.00 36.22 2.67
3789 4226 9.690434 CGTAGTAAAAGTAATTTGCATTCTCTC 57.310 33.333 0.00 0.00 36.22 3.20
3818 4255 5.506317 CGAGGAAACTGAAGATGCAAAAACT 60.506 40.000 0.00 0.00 44.43 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.126384 TGAAAGTTTTTCCCACAAGTGTAGG 59.874 40.000 0.00 0.00 0.00 3.18
1 2 6.202516 TGAAAGTTTTTCCCACAAGTGTAG 57.797 37.500 0.00 0.00 0.00 2.74
2 3 6.591750 TTGAAAGTTTTTCCCACAAGTGTA 57.408 33.333 0.00 0.00 0.00 2.90
3 4 5.476091 TTGAAAGTTTTTCCCACAAGTGT 57.524 34.783 0.00 0.00 0.00 3.55
4 5 5.931724 AGTTTGAAAGTTTTTCCCACAAGTG 59.068 36.000 0.00 0.00 0.00 3.16
5 6 6.109156 AGTTTGAAAGTTTTTCCCACAAGT 57.891 33.333 0.00 0.00 0.00 3.16
6 7 8.716646 AATAGTTTGAAAGTTTTTCCCACAAG 57.283 30.769 0.00 0.00 0.00 3.16
10 11 8.700051 TGATGAATAGTTTGAAAGTTTTTCCCA 58.300 29.630 0.00 0.00 0.00 4.37
91 92 0.317479 ACAGTCGTTGCTAGGTGGTC 59.683 55.000 0.00 0.00 0.00 4.02
95 96 1.004918 GGCACAGTCGTTGCTAGGT 60.005 57.895 0.00 0.00 0.00 3.08
115 141 3.998672 GTGGAGGGGCAACGACGA 61.999 66.667 0.00 0.00 37.60 4.20
118 144 3.948719 GTGGTGGAGGGGCAACGA 61.949 66.667 0.00 0.00 37.60 3.85
120 146 2.282462 CAGTGGTGGAGGGGCAAC 60.282 66.667 0.00 0.00 0.00 4.17
132 158 2.284921 TCTCCTGCCCTCCAGTGG 60.285 66.667 1.40 1.40 40.06 4.00
136 162 0.339859 AGTATGTCTCCTGCCCTCCA 59.660 55.000 0.00 0.00 0.00 3.86
203 229 6.309389 ACGGAGGGAGTATGTTCTATTTTT 57.691 37.500 0.00 0.00 0.00 1.94
204 230 5.952347 ACGGAGGGAGTATGTTCTATTTT 57.048 39.130 0.00 0.00 0.00 1.82
205 231 5.163332 GGAACGGAGGGAGTATGTTCTATTT 60.163 44.000 3.76 0.00 39.05 1.40
206 232 4.344390 GGAACGGAGGGAGTATGTTCTATT 59.656 45.833 3.76 0.00 39.05 1.73
207 233 3.896272 GGAACGGAGGGAGTATGTTCTAT 59.104 47.826 3.76 0.00 39.05 1.98
208 234 3.053095 AGGAACGGAGGGAGTATGTTCTA 60.053 47.826 3.76 0.00 39.05 2.10
209 235 2.108970 GGAACGGAGGGAGTATGTTCT 58.891 52.381 3.76 0.00 39.05 3.01
210 236 2.108970 AGGAACGGAGGGAGTATGTTC 58.891 52.381 0.00 0.00 38.50 3.18
211 237 2.249309 AGGAACGGAGGGAGTATGTT 57.751 50.000 0.00 0.00 0.00 2.71
212 238 3.393426 TTAGGAACGGAGGGAGTATGT 57.607 47.619 0.00 0.00 0.00 2.29
213 239 4.957684 ATTTAGGAACGGAGGGAGTATG 57.042 45.455 0.00 0.00 0.00 2.39
214 240 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
215 241 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
216 242 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
217 243 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
218 244 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
219 245 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
220 246 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
221 247 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
247 273 8.794553 CCGTATGTAGTTTATAGTGGAATCTCT 58.205 37.037 0.00 0.00 0.00 3.10
248 274 8.790718 TCCGTATGTAGTTTATAGTGGAATCTC 58.209 37.037 0.00 0.00 0.00 2.75
249 275 8.701908 TCCGTATGTAGTTTATAGTGGAATCT 57.298 34.615 0.00 0.00 0.00 2.40
250 276 7.541437 GCTCCGTATGTAGTTTATAGTGGAATC 59.459 40.741 0.00 0.00 0.00 2.52
251 277 7.014905 TGCTCCGTATGTAGTTTATAGTGGAAT 59.985 37.037 0.00 0.00 0.00 3.01
252 278 6.321945 TGCTCCGTATGTAGTTTATAGTGGAA 59.678 38.462 0.00 0.00 0.00 3.53
253 279 5.829391 TGCTCCGTATGTAGTTTATAGTGGA 59.171 40.000 0.00 0.00 0.00 4.02
254 280 6.080648 TGCTCCGTATGTAGTTTATAGTGG 57.919 41.667 0.00 0.00 0.00 4.00
255 281 7.997107 TTTGCTCCGTATGTAGTTTATAGTG 57.003 36.000 0.00 0.00 0.00 2.74
256 282 9.042008 CATTTTGCTCCGTATGTAGTTTATAGT 57.958 33.333 0.00 0.00 0.00 2.12
257 283 9.256477 TCATTTTGCTCCGTATGTAGTTTATAG 57.744 33.333 0.00 0.00 0.00 1.31
258 284 9.256477 CTCATTTTGCTCCGTATGTAGTTTATA 57.744 33.333 0.00 0.00 0.00 0.98
259 285 7.769044 ACTCATTTTGCTCCGTATGTAGTTTAT 59.231 33.333 0.00 0.00 0.00 1.40
260 286 7.064134 CACTCATTTTGCTCCGTATGTAGTTTA 59.936 37.037 0.00 0.00 0.00 2.01
261 287 5.938125 ACTCATTTTGCTCCGTATGTAGTTT 59.062 36.000 0.00 0.00 0.00 2.66
262 288 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
263 289 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
264 290 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
265 291 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
266 292 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
267 293 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
268 294 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
269 295 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
270 296 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
271 297 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
272 298 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
273 299 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
284 310 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
294 320 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
295 321 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
299 325 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
300 326 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
301 327 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
302 328 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
303 329 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
304 330 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
305 331 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
306 332 7.123383 TGGACCACATACGGATGTATATAGAT 58.877 38.462 14.23 0.00 44.82 1.98
307 333 6.486941 TGGACCACATACGGATGTATATAGA 58.513 40.000 14.23 0.00 44.82 1.98
308 334 6.769134 TGGACCACATACGGATGTATATAG 57.231 41.667 14.23 0.00 44.82 1.31
309 335 8.826293 TTATGGACCACATACGGATGTATATA 57.174 34.615 14.23 5.39 44.82 0.86
310 336 7.727578 TTATGGACCACATACGGATGTATAT 57.272 36.000 14.23 1.16 44.82 0.86
311 337 7.727578 ATTATGGACCACATACGGATGTATA 57.272 36.000 14.23 4.47 44.82 1.47
312 338 6.620877 ATTATGGACCACATACGGATGTAT 57.379 37.500 14.23 4.48 44.82 2.29
313 339 6.949463 TCTATTATGGACCACATACGGATGTA 59.051 38.462 14.23 0.00 44.82 2.29
315 341 6.280855 TCTATTATGGACCACATACGGATG 57.719 41.667 5.94 5.94 41.61 3.51
316 342 6.928348 TTCTATTATGGACCACATACGGAT 57.072 37.500 0.00 0.00 41.61 4.18
317 343 6.724441 AGATTCTATTATGGACCACATACGGA 59.276 38.462 0.00 0.00 41.61 4.69
318 344 6.936279 AGATTCTATTATGGACCACATACGG 58.064 40.000 0.00 0.00 41.61 4.02
319 345 7.831753 AGAGATTCTATTATGGACCACATACG 58.168 38.462 0.00 0.00 41.61 3.06
321 347 9.822727 TGTAGAGATTCTATTATGGACCACATA 57.177 33.333 0.00 0.00 40.23 2.29
322 348 8.727100 TGTAGAGATTCTATTATGGACCACAT 57.273 34.615 0.00 0.00 36.10 3.21
323 349 8.547481 TTGTAGAGATTCTATTATGGACCACA 57.453 34.615 0.00 0.00 30.76 4.17
324 350 9.482627 CTTTGTAGAGATTCTATTATGGACCAC 57.517 37.037 0.00 0.00 30.76 4.16
325 351 9.434275 TCTTTGTAGAGATTCTATTATGGACCA 57.566 33.333 0.00 0.00 30.76 4.02
326 352 9.699703 GTCTTTGTAGAGATTCTATTATGGACC 57.300 37.037 0.00 0.00 30.76 4.46
364 390 8.701895 TGGTCGAAGTTATATATTTCCTCTGTT 58.298 33.333 0.00 0.00 0.00 3.16
365 391 8.246430 TGGTCGAAGTTATATATTTCCTCTGT 57.754 34.615 0.00 0.00 0.00 3.41
366 392 9.542462 TTTGGTCGAAGTTATATATTTCCTCTG 57.458 33.333 0.00 0.00 0.00 3.35
367 393 9.543783 GTTTGGTCGAAGTTATATATTTCCTCT 57.456 33.333 0.00 0.00 0.00 3.69
368 394 9.321562 TGTTTGGTCGAAGTTATATATTTCCTC 57.678 33.333 0.00 0.00 0.00 3.71
369 395 9.847224 ATGTTTGGTCGAAGTTATATATTTCCT 57.153 29.630 0.00 0.00 0.00 3.36
370 396 9.878599 CATGTTTGGTCGAAGTTATATATTTCC 57.121 33.333 0.00 0.00 0.00 3.13
374 400 8.761497 CGTTCATGTTTGGTCGAAGTTATATAT 58.239 33.333 0.00 0.00 0.00 0.86
375 401 7.254185 GCGTTCATGTTTGGTCGAAGTTATATA 60.254 37.037 0.00 0.00 0.00 0.86
376 402 6.456449 GCGTTCATGTTTGGTCGAAGTTATAT 60.456 38.462 0.00 0.00 0.00 0.86
377 403 5.163933 GCGTTCATGTTTGGTCGAAGTTATA 60.164 40.000 0.00 0.00 0.00 0.98
378 404 4.378046 GCGTTCATGTTTGGTCGAAGTTAT 60.378 41.667 0.00 0.00 0.00 1.89
379 405 3.059461 GCGTTCATGTTTGGTCGAAGTTA 60.059 43.478 0.00 0.00 0.00 2.24
380 406 2.286772 GCGTTCATGTTTGGTCGAAGTT 60.287 45.455 0.00 0.00 0.00 2.66
381 407 1.263217 GCGTTCATGTTTGGTCGAAGT 59.737 47.619 0.00 0.00 0.00 3.01
382 408 1.399727 GGCGTTCATGTTTGGTCGAAG 60.400 52.381 0.00 0.00 0.00 3.79
383 409 0.589223 GGCGTTCATGTTTGGTCGAA 59.411 50.000 0.00 0.00 0.00 3.71
384 410 0.533085 TGGCGTTCATGTTTGGTCGA 60.533 50.000 0.00 0.00 0.00 4.20
385 411 0.521291 ATGGCGTTCATGTTTGGTCG 59.479 50.000 0.00 0.00 34.22 4.79
386 412 2.486203 TGTATGGCGTTCATGTTTGGTC 59.514 45.455 0.00 0.00 37.30 4.02
387 413 2.509569 TGTATGGCGTTCATGTTTGGT 58.490 42.857 0.00 0.00 37.30 3.67
388 414 3.694734 GATGTATGGCGTTCATGTTTGG 58.305 45.455 3.36 0.00 37.30 3.28
389 415 3.181511 ACGATGTATGGCGTTCATGTTTG 60.182 43.478 3.36 0.00 37.48 2.93
390 416 3.006940 ACGATGTATGGCGTTCATGTTT 58.993 40.909 3.36 0.00 37.48 2.83
391 417 2.607635 GACGATGTATGGCGTTCATGTT 59.392 45.455 3.36 0.00 41.34 2.71
392 418 2.201732 GACGATGTATGGCGTTCATGT 58.798 47.619 3.36 2.97 41.34 3.21
393 419 2.033747 GTGACGATGTATGGCGTTCATG 60.034 50.000 3.36 0.00 41.34 3.07
394 420 2.201732 GTGACGATGTATGGCGTTCAT 58.798 47.619 0.00 0.00 41.34 2.57
395 421 1.635844 GTGACGATGTATGGCGTTCA 58.364 50.000 0.00 0.00 41.34 3.18
396 422 0.570734 CGTGACGATGTATGGCGTTC 59.429 55.000 0.00 0.00 41.34 3.95
397 423 0.108992 ACGTGACGATGTATGGCGTT 60.109 50.000 13.70 0.00 41.34 4.84
398 424 0.734309 TACGTGACGATGTATGGCGT 59.266 50.000 13.70 0.00 44.33 5.68
399 425 1.395670 CTACGTGACGATGTATGGCG 58.604 55.000 13.70 0.00 0.00 5.69
400 426 1.129326 GCTACGTGACGATGTATGGC 58.871 55.000 13.70 0.00 0.00 4.40
401 427 2.117137 GTGCTACGTGACGATGTATGG 58.883 52.381 13.70 0.00 0.00 2.74
402 428 2.530297 GTGTGCTACGTGACGATGTATG 59.470 50.000 13.70 0.00 0.00 2.39
403 429 2.162809 TGTGTGCTACGTGACGATGTAT 59.837 45.455 13.70 0.00 0.00 2.29
404 430 1.536331 TGTGTGCTACGTGACGATGTA 59.464 47.619 13.70 0.00 0.00 2.29
422 448 5.982645 GCCAATATGGAGGTTCATACCATGT 60.983 44.000 0.00 0.00 41.79 3.21
425 451 3.461458 TGCCAATATGGAGGTTCATACCA 59.539 43.478 0.00 0.00 41.79 3.25
444 470 3.383620 TCACATGACCAACAAAATGCC 57.616 42.857 0.00 0.00 0.00 4.40
454 480 7.286546 TGAAAAGAAAAAGGTATCACATGACCA 59.713 33.333 0.00 0.00 38.27 4.02
469 495 9.434420 TTGCTGAAAGAGAATTGAAAAGAAAAA 57.566 25.926 0.00 0.00 34.07 1.94
471 497 7.492344 GGTTGCTGAAAGAGAATTGAAAAGAAA 59.508 33.333 0.00 0.00 34.07 2.52
485 511 4.799564 AAACAGTTTGGTTGCTGAAAGA 57.200 36.364 0.00 0.00 34.07 2.52
526 552 2.168496 GGAAAGTGGAGCTTTTACCCC 58.832 52.381 0.00 0.00 46.54 4.95
541 570 4.398319 TCTTTTACTGGCAGAAGGGAAAG 58.602 43.478 23.66 19.67 0.00 2.62
542 571 4.398319 CTCTTTTACTGGCAGAAGGGAAA 58.602 43.478 23.66 12.20 0.00 3.13
548 577 3.857157 ACACCTCTTTTACTGGCAGAA 57.143 42.857 23.66 8.39 0.00 3.02
550 579 4.832248 TCATACACCTCTTTTACTGGCAG 58.168 43.478 14.16 14.16 0.00 4.85
551 580 4.901197 TCATACACCTCTTTTACTGGCA 57.099 40.909 0.00 0.00 0.00 4.92
552 581 5.428253 TGATCATACACCTCTTTTACTGGC 58.572 41.667 0.00 0.00 0.00 4.85
553 582 6.758886 GTCTGATCATACACCTCTTTTACTGG 59.241 42.308 6.37 0.00 0.00 4.00
565 600 1.683917 AGGCCGAGTCTGATCATACAC 59.316 52.381 13.15 6.34 0.00 2.90
581 616 4.519540 TTTGATAAGTTTGCTTCAGGCC 57.480 40.909 0.00 0.00 40.92 5.19
606 643 8.159447 TCCTCTAGCAACAATCTGCATATTTAT 58.841 33.333 0.00 0.00 45.18 1.40
607 644 7.508687 TCCTCTAGCAACAATCTGCATATTTA 58.491 34.615 0.00 0.00 45.18 1.40
609 646 5.933617 TCCTCTAGCAACAATCTGCATATT 58.066 37.500 0.00 0.00 45.18 1.28
612 649 3.920231 TCCTCTAGCAACAATCTGCAT 57.080 42.857 0.00 0.00 45.18 3.96
613 650 3.603532 CTTCCTCTAGCAACAATCTGCA 58.396 45.455 0.00 0.00 45.18 4.41
635 672 0.672401 TCTGCCGGAAATCGTTGGAC 60.672 55.000 5.05 0.00 37.11 4.02
641 678 0.652592 GTCATGTCTGCCGGAAATCG 59.347 55.000 5.05 0.00 38.88 3.34
681 718 9.869757 CTGTCCTTTTTCCTTTTTCTTTTCTAA 57.130 29.630 0.00 0.00 0.00 2.10
682 719 7.979537 GCTGTCCTTTTTCCTTTTTCTTTTCTA 59.020 33.333 0.00 0.00 0.00 2.10
683 720 6.818644 GCTGTCCTTTTTCCTTTTTCTTTTCT 59.181 34.615 0.00 0.00 0.00 2.52
684 721 6.037172 GGCTGTCCTTTTTCCTTTTTCTTTTC 59.963 38.462 0.00 0.00 0.00 2.29
685 722 5.880332 GGCTGTCCTTTTTCCTTTTTCTTTT 59.120 36.000 0.00 0.00 0.00 2.27
686 723 5.428253 GGCTGTCCTTTTTCCTTTTTCTTT 58.572 37.500 0.00 0.00 0.00 2.52
687 724 4.441495 CGGCTGTCCTTTTTCCTTTTTCTT 60.441 41.667 0.00 0.00 0.00 2.52
688 725 3.068165 CGGCTGTCCTTTTTCCTTTTTCT 59.932 43.478 0.00 0.00 0.00 2.52
689 726 3.181479 ACGGCTGTCCTTTTTCCTTTTTC 60.181 43.478 0.00 0.00 0.00 2.29
690 727 2.764010 ACGGCTGTCCTTTTTCCTTTTT 59.236 40.909 0.00 0.00 0.00 1.94
691 728 2.384828 ACGGCTGTCCTTTTTCCTTTT 58.615 42.857 0.00 0.00 0.00 2.27
692 729 2.067365 ACGGCTGTCCTTTTTCCTTT 57.933 45.000 0.00 0.00 0.00 3.11
693 730 2.552373 CCTACGGCTGTCCTTTTTCCTT 60.552 50.000 0.00 0.00 0.00 3.36
694 731 1.003233 CCTACGGCTGTCCTTTTTCCT 59.997 52.381 0.00 0.00 0.00 3.36
695 732 1.002773 TCCTACGGCTGTCCTTTTTCC 59.997 52.381 0.00 0.00 0.00 3.13
696 733 2.467566 TCCTACGGCTGTCCTTTTTC 57.532 50.000 0.00 0.00 0.00 2.29
697 734 2.304761 TCATCCTACGGCTGTCCTTTTT 59.695 45.455 0.00 0.00 0.00 1.94
698 735 1.906574 TCATCCTACGGCTGTCCTTTT 59.093 47.619 0.00 0.00 0.00 2.27
699 736 1.568504 TCATCCTACGGCTGTCCTTT 58.431 50.000 0.00 0.00 0.00 3.11
700 737 1.482593 CTTCATCCTACGGCTGTCCTT 59.517 52.381 0.00 0.00 0.00 3.36
701 738 1.115467 CTTCATCCTACGGCTGTCCT 58.885 55.000 0.00 0.00 0.00 3.85
702 739 0.824759 ACTTCATCCTACGGCTGTCC 59.175 55.000 0.00 0.00 0.00 4.02
703 740 1.471676 CCACTTCATCCTACGGCTGTC 60.472 57.143 0.00 0.00 0.00 3.51
704 741 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
705 742 0.824109 TCCACTTCATCCTACGGCTG 59.176 55.000 0.00 0.00 0.00 4.85
706 743 1.482593 CTTCCACTTCATCCTACGGCT 59.517 52.381 0.00 0.00 0.00 5.52
707 744 1.207329 ACTTCCACTTCATCCTACGGC 59.793 52.381 0.00 0.00 0.00 5.68
708 745 3.446161 TGTACTTCCACTTCATCCTACGG 59.554 47.826 0.00 0.00 0.00 4.02
709 746 4.398358 TCTGTACTTCCACTTCATCCTACG 59.602 45.833 0.00 0.00 0.00 3.51
710 747 5.916661 TCTGTACTTCCACTTCATCCTAC 57.083 43.478 0.00 0.00 0.00 3.18
711 748 5.363868 CCATCTGTACTTCCACTTCATCCTA 59.636 44.000 0.00 0.00 0.00 2.94
712 749 4.163078 CCATCTGTACTTCCACTTCATCCT 59.837 45.833 0.00 0.00 0.00 3.24
713 750 4.162320 TCCATCTGTACTTCCACTTCATCC 59.838 45.833 0.00 0.00 0.00 3.51
714 751 5.344743 TCCATCTGTACTTCCACTTCATC 57.655 43.478 0.00 0.00 0.00 2.92
715 752 5.738909 CTTCCATCTGTACTTCCACTTCAT 58.261 41.667 0.00 0.00 0.00 2.57
716 753 4.563580 GCTTCCATCTGTACTTCCACTTCA 60.564 45.833 0.00 0.00 0.00 3.02
717 754 3.935828 GCTTCCATCTGTACTTCCACTTC 59.064 47.826 0.00 0.00 0.00 3.01
718 755 3.327757 TGCTTCCATCTGTACTTCCACTT 59.672 43.478 0.00 0.00 0.00 3.16
719 756 2.906389 TGCTTCCATCTGTACTTCCACT 59.094 45.455 0.00 0.00 0.00 4.00
720 757 3.334583 TGCTTCCATCTGTACTTCCAC 57.665 47.619 0.00 0.00 0.00 4.02
721 758 3.370846 CCATGCTTCCATCTGTACTTCCA 60.371 47.826 0.00 0.00 0.00 3.53
722 759 3.209410 CCATGCTTCCATCTGTACTTCC 58.791 50.000 0.00 0.00 0.00 3.46
723 760 3.118261 TCCCATGCTTCCATCTGTACTTC 60.118 47.826 0.00 0.00 0.00 3.01
724 761 2.846206 TCCCATGCTTCCATCTGTACTT 59.154 45.455 0.00 0.00 0.00 2.24
725 762 2.481441 TCCCATGCTTCCATCTGTACT 58.519 47.619 0.00 0.00 0.00 2.73
726 763 3.209410 CTTCCCATGCTTCCATCTGTAC 58.791 50.000 0.00 0.00 0.00 2.90
727 764 2.846206 ACTTCCCATGCTTCCATCTGTA 59.154 45.455 0.00 0.00 0.00 2.74
728 765 1.637553 ACTTCCCATGCTTCCATCTGT 59.362 47.619 0.00 0.00 0.00 3.41
729 766 2.022195 CACTTCCCATGCTTCCATCTG 58.978 52.381 0.00 0.00 0.00 2.90
730 767 1.918262 TCACTTCCCATGCTTCCATCT 59.082 47.619 0.00 0.00 0.00 2.90
731 768 2.295885 CTCACTTCCCATGCTTCCATC 58.704 52.381 0.00 0.00 0.00 3.51
732 769 1.684248 GCTCACTTCCCATGCTTCCAT 60.684 52.381 0.00 0.00 0.00 3.41
733 770 0.322816 GCTCACTTCCCATGCTTCCA 60.323 55.000 0.00 0.00 0.00 3.53
734 771 0.322816 TGCTCACTTCCCATGCTTCC 60.323 55.000 0.00 0.00 0.00 3.46
735 772 1.093159 CTGCTCACTTCCCATGCTTC 58.907 55.000 0.00 0.00 0.00 3.86
736 773 0.323178 CCTGCTCACTTCCCATGCTT 60.323 55.000 0.00 0.00 0.00 3.91
737 774 1.302285 CCTGCTCACTTCCCATGCT 59.698 57.895 0.00 0.00 0.00 3.79
738 775 2.413142 GCCTGCTCACTTCCCATGC 61.413 63.158 0.00 0.00 0.00 4.06
739 776 0.609957 TTGCCTGCTCACTTCCCATG 60.610 55.000 0.00 0.00 0.00 3.66
740 777 0.323178 CTTGCCTGCTCACTTCCCAT 60.323 55.000 0.00 0.00 0.00 4.00
741 778 1.073722 CTTGCCTGCTCACTTCCCA 59.926 57.895 0.00 0.00 0.00 4.37
742 779 2.338785 GCTTGCCTGCTCACTTCCC 61.339 63.158 0.00 0.00 0.00 3.97
743 780 2.338785 GGCTTGCCTGCTCACTTCC 61.339 63.158 4.11 0.00 0.00 3.46
744 781 2.684843 CGGCTTGCCTGCTCACTTC 61.685 63.158 10.12 0.00 0.00 3.01
745 782 2.670934 CGGCTTGCCTGCTCACTT 60.671 61.111 10.12 0.00 0.00 3.16
746 783 4.711949 CCGGCTTGCCTGCTCACT 62.712 66.667 10.12 0.00 0.00 3.41
747 784 3.984193 ATCCGGCTTGCCTGCTCAC 62.984 63.158 10.12 0.00 0.00 3.51
748 785 3.687321 GATCCGGCTTGCCTGCTCA 62.687 63.158 10.12 0.00 0.00 4.26
749 786 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
750 787 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
752 789 4.883354 GGGGATCCGGCTTGCCTG 62.883 72.222 5.45 3.29 0.00 4.85
754 791 4.883354 CAGGGGATCCGGCTTGCC 62.883 72.222 5.45 0.48 38.33 4.52
755 792 3.645268 AACAGGGGATCCGGCTTGC 62.645 63.158 5.45 0.00 38.33 4.01
756 793 1.000896 AAACAGGGGATCCGGCTTG 60.001 57.895 5.45 1.99 38.33 4.01
757 794 1.000896 CAAACAGGGGATCCGGCTT 60.001 57.895 5.45 0.00 38.33 4.35
758 795 1.497309 TTCAAACAGGGGATCCGGCT 61.497 55.000 5.45 0.00 38.33 5.52
759 796 1.001393 TTCAAACAGGGGATCCGGC 60.001 57.895 5.45 0.00 38.33 6.13
760 797 1.032114 GCTTCAAACAGGGGATCCGG 61.032 60.000 5.45 0.00 38.33 5.14
761 798 0.035056 AGCTTCAAACAGGGGATCCG 60.035 55.000 5.45 0.00 38.33 4.18
762 799 1.467920 CAGCTTCAAACAGGGGATCC 58.532 55.000 1.92 1.92 0.00 3.36
763 800 0.813821 GCAGCTTCAAACAGGGGATC 59.186 55.000 0.00 0.00 0.00 3.36
764 801 0.962356 CGCAGCTTCAAACAGGGGAT 60.962 55.000 0.00 0.00 0.00 3.85
765 802 1.600636 CGCAGCTTCAAACAGGGGA 60.601 57.895 0.00 0.00 0.00 4.81
766 803 1.600636 TCGCAGCTTCAAACAGGGG 60.601 57.895 0.00 0.00 0.00 4.79
767 804 1.576421 GTCGCAGCTTCAAACAGGG 59.424 57.895 0.00 0.00 0.00 4.45
768 805 1.205064 CGTCGCAGCTTCAAACAGG 59.795 57.895 0.00 0.00 0.00 4.00
769 806 1.205064 CCGTCGCAGCTTCAAACAG 59.795 57.895 0.00 0.00 0.00 3.16
770 807 2.892334 GCCGTCGCAGCTTCAAACA 61.892 57.895 0.00 0.00 34.03 2.83
771 808 2.127232 GCCGTCGCAGCTTCAAAC 60.127 61.111 0.00 0.00 34.03 2.93
772 809 3.711842 CGCCGTCGCAGCTTCAAA 61.712 61.111 0.00 0.00 34.03 2.69
808 845 2.262603 CTCGTGCTAGCACAGGCA 59.737 61.111 38.95 22.33 46.47 4.75
809 846 3.191539 GCTCGTGCTAGCACAGGC 61.192 66.667 38.95 34.94 46.47 4.85
816 853 1.079543 AACCTGCTGCTCGTGCTAG 60.080 57.895 11.19 7.64 40.48 3.42
817 854 1.079819 GAACCTGCTGCTCGTGCTA 60.080 57.895 11.19 0.00 40.48 3.49
820 857 2.320587 GGTGAACCTGCTGCTCGTG 61.321 63.158 0.00 0.00 0.00 4.35
821 858 2.031163 GGTGAACCTGCTGCTCGT 59.969 61.111 0.00 0.00 0.00 4.18
822 859 2.743928 GGGTGAACCTGCTGCTCG 60.744 66.667 0.00 0.00 35.85 5.03
823 860 1.228245 TTGGGTGAACCTGCTGCTC 60.228 57.895 0.00 0.00 41.11 4.26
824 861 1.529244 GTTGGGTGAACCTGCTGCT 60.529 57.895 0.00 0.00 41.11 4.24
825 862 2.908073 CGTTGGGTGAACCTGCTGC 61.908 63.158 0.00 0.00 41.11 5.25
826 863 2.260869 CCGTTGGGTGAACCTGCTG 61.261 63.158 0.00 0.00 41.11 4.41
831 894 2.519780 TTGGCCGTTGGGTGAACC 60.520 61.111 0.00 0.00 40.81 3.62
860 923 0.306533 GGCGCGAACTGAAACTGAAA 59.693 50.000 12.10 0.00 0.00 2.69
949 1012 0.321671 CGTCTCAGCCTCTTGGGAAA 59.678 55.000 0.00 0.00 37.23 3.13
955 1018 3.764466 CCGCCGTCTCAGCCTCTT 61.764 66.667 0.00 0.00 0.00 2.85
1141 1214 3.756727 GAGGTCCGGGTGGTCGAC 61.757 72.222 7.13 7.13 36.30 4.20
1912 2349 2.319136 TGTTGTAGACGCAGGTGTTT 57.681 45.000 0.00 0.00 0.00 2.83
2051 2488 1.513158 CACGACAGAGCCCACCTAG 59.487 63.158 0.00 0.00 0.00 3.02
2053 2490 4.008933 GCACGACAGAGCCCACCT 62.009 66.667 0.00 0.00 0.00 4.00
2098 2535 1.319541 TCTCGATCATCCCCTCGAAC 58.680 55.000 0.00 0.00 42.73 3.95
2199 2636 7.944554 TCTTCCTCATAAAACCAAAGATTGTCT 59.055 33.333 0.00 0.00 0.00 3.41
2314 2751 1.482954 CAGCAGTCCTCATCTCCTCA 58.517 55.000 0.00 0.00 0.00 3.86
2383 2820 1.478105 TCATCGACACTCCCATGTCTG 59.522 52.381 4.54 0.00 45.73 3.51
2512 2949 3.094572 CAATCTCCCAAGCAAGTCCATT 58.905 45.455 0.00 0.00 0.00 3.16
2530 2967 1.425066 TGAACTCCTTCCTGTGGCAAT 59.575 47.619 0.00 0.00 0.00 3.56
2590 3027 4.229639 TCTCCATATCTCCACTTGAGCAT 58.770 43.478 0.00 0.00 41.18 3.79
2854 3291 0.984995 GGTAGCTTGTTCACCCTCCT 59.015 55.000 0.00 0.00 0.00 3.69
2869 3306 1.446792 CCGTGCTGCACTGAGGTAG 60.447 63.158 28.04 12.13 31.34 3.18
2885 3322 1.170442 AAATCGGCCAAAGTAACCCG 58.830 50.000 2.24 0.00 41.97 5.28
2951 3388 2.439409 CTTCAATGTGCCATCACTCCA 58.561 47.619 0.00 0.00 43.49 3.86
3000 3437 8.031277 GCCTGATCATCTTATGTGAAAGTTTTT 58.969 33.333 0.00 0.00 0.00 1.94
3008 3445 5.363101 GTCAAGCCTGATCATCTTATGTGA 58.637 41.667 0.00 0.00 33.05 3.58
3041 3478 1.699083 TCCTGGACTGCATCTTGTTCA 59.301 47.619 0.00 0.00 0.00 3.18
3107 3544 2.226437 CCGTCCTTGTCCAAGTTTGATG 59.774 50.000 6.31 2.68 36.72 3.07
3751 4188 1.894881 TTACTACGGGCACAAAACCC 58.105 50.000 0.00 0.00 44.63 4.11
3753 4190 4.556942 ACTTTTACTACGGGCACAAAAC 57.443 40.909 0.00 0.00 0.00 2.43
3767 4204 7.486232 GCCAGAGAGAATGCAAATTACTTTTAC 59.514 37.037 0.00 0.00 0.00 2.01
3773 4210 3.242870 CGGCCAGAGAGAATGCAAATTAC 60.243 47.826 2.24 0.00 0.00 1.89
3789 4226 0.321671 TCTTCAGTTTCCTCGGCCAG 59.678 55.000 2.24 0.00 0.00 4.85
3818 4255 2.256306 TGAGCACCAGTCTTCCACATA 58.744 47.619 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.