Multiple sequence alignment - TraesCS7B01G080500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G080500 chr7B 100.000 3182 0 0 1 3182 90404565 90401384 0.000000e+00 5877
1 TraesCS7B01G080500 chr7B 97.963 2946 56 3 238 3182 662733550 662736492 0.000000e+00 5105
2 TraesCS7B01G080500 chr7B 93.137 102 6 1 128 228 530643513 530643614 7.110000e-32 148
3 TraesCS7B01G080500 chr3B 97.794 2946 61 3 238 3182 201564745 201561803 0.000000e+00 5077
4 TraesCS7B01G080500 chr3B 90.678 118 10 1 11 128 165440864 165440748 4.250000e-34 156
5 TraesCS7B01G080500 chr3B 93.069 101 6 1 128 228 465284592 465284691 2.560000e-31 147
6 TraesCS7B01G080500 chr1B 97.521 2945 71 2 238 3182 633732834 633729892 0.000000e+00 5033
7 TraesCS7B01G080500 chr1B 94.175 103 5 1 127 228 665222173 665222275 4.250000e-34 156
8 TraesCS7B01G080500 chr2D 97.115 2946 67 4 238 3182 272805613 272802685 0.000000e+00 4953
9 TraesCS7B01G080500 chr2D 96.751 2770 72 4 414 3182 196967517 196964765 0.000000e+00 4601
10 TraesCS7B01G080500 chr2D 98.003 2203 39 1 978 3180 630266002 630268199 0.000000e+00 3819
11 TraesCS7B01G080500 chr3A 96.742 2947 85 6 238 3182 672882392 672879455 0.000000e+00 4900
12 TraesCS7B01G080500 chr7A 94.544 2951 136 16 238 3182 352681399 352678468 0.000000e+00 4534
13 TraesCS7B01G080500 chr7A 94.484 2955 110 22 238 3182 4704817 4701906 0.000000e+00 4505
14 TraesCS7B01G080500 chr1D 97.288 2397 60 4 238 2633 254532234 254534626 0.000000e+00 4061
15 TraesCS7B01G080500 chr1D 93.137 102 7 0 127 228 492587469 492587570 1.980000e-32 150
16 TraesCS7B01G080500 chr2A 95.038 1189 37 7 238 1418 394049402 394050576 0.000000e+00 1849
17 TraesCS7B01G080500 chr2B 96.574 467 13 2 238 704 474927574 474928037 0.000000e+00 771
18 TraesCS7B01G080500 chr5B 96.040 101 4 0 128 228 549165550 549165450 7.060000e-37 165
19 TraesCS7B01G080500 chr6B 94.286 105 5 1 125 228 128195416 128195312 3.290000e-35 159
20 TraesCS7B01G080500 chr6B 92.157 102 7 1 128 228 128194466 128194567 3.310000e-30 143
21 TraesCS7B01G080500 chr6D 94.118 102 5 1 128 228 463839809 463839708 1.530000e-33 154
22 TraesCS7B01G080500 chr4A 94.118 102 5 1 128 228 677672036 677671935 1.530000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G080500 chr7B 90401384 90404565 3181 True 5877 5877 100.000 1 3182 1 chr7B.!!$R1 3181
1 TraesCS7B01G080500 chr7B 662733550 662736492 2942 False 5105 5105 97.963 238 3182 1 chr7B.!!$F2 2944
2 TraesCS7B01G080500 chr3B 201561803 201564745 2942 True 5077 5077 97.794 238 3182 1 chr3B.!!$R2 2944
3 TraesCS7B01G080500 chr1B 633729892 633732834 2942 True 5033 5033 97.521 238 3182 1 chr1B.!!$R1 2944
4 TraesCS7B01G080500 chr2D 272802685 272805613 2928 True 4953 4953 97.115 238 3182 1 chr2D.!!$R2 2944
5 TraesCS7B01G080500 chr2D 196964765 196967517 2752 True 4601 4601 96.751 414 3182 1 chr2D.!!$R1 2768
6 TraesCS7B01G080500 chr2D 630266002 630268199 2197 False 3819 3819 98.003 978 3180 1 chr2D.!!$F1 2202
7 TraesCS7B01G080500 chr3A 672879455 672882392 2937 True 4900 4900 96.742 238 3182 1 chr3A.!!$R1 2944
8 TraesCS7B01G080500 chr7A 352678468 352681399 2931 True 4534 4534 94.544 238 3182 1 chr7A.!!$R2 2944
9 TraesCS7B01G080500 chr7A 4701906 4704817 2911 True 4505 4505 94.484 238 3182 1 chr7A.!!$R1 2944
10 TraesCS7B01G080500 chr1D 254532234 254534626 2392 False 4061 4061 97.288 238 2633 1 chr1D.!!$F1 2395
11 TraesCS7B01G080500 chr2A 394049402 394050576 1174 False 1849 1849 95.038 238 1418 1 chr2A.!!$F1 1180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.178891 AAGGGTTGAGCAGGAGAGGA 60.179 55.0 0.0 0.0 0.00 3.71 F
123 124 0.325110 TTGAGCAGGAGAGGAGGGAG 60.325 60.0 0.0 0.0 0.00 4.30 F
131 132 0.325203 GAGAGGAGGGAGCAGGAGTT 60.325 60.0 0.0 0.0 0.00 3.01 F
213 214 0.692476 TGCCATGCAGTACCAACTCT 59.308 50.0 0.0 0.0 31.97 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1367 2.104963 GAGATCCGCCATAAAAGGTCCT 59.895 50.000 0.00 0.00 0.00 3.85 R
1975 2001 5.107133 TGGCGCTTCTACTCTTACATAAAC 58.893 41.667 7.64 0.00 0.00 2.01 R
1995 2023 5.420725 AAATCCCTAATTCACCTTTTGGC 57.579 39.130 0.00 0.00 45.59 4.52 R
2259 2287 7.162082 GGTCAAAATGGGTAGAATCGATATCT 58.838 38.462 0.00 6.83 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.741985 TCGAACTGCACGGCCATG 60.742 61.111 2.24 0.00 0.00 3.66
18 19 3.803082 CGAACTGCACGGCCATGG 61.803 66.667 7.63 7.63 0.00 3.66
19 20 2.359850 GAACTGCACGGCCATGGA 60.360 61.111 18.40 0.00 0.00 3.41
20 21 2.360350 AACTGCACGGCCATGGAG 60.360 61.111 19.51 19.51 43.26 3.86
21 22 2.803155 GAACTGCACGGCCATGGAGA 62.803 60.000 27.82 0.00 40.28 3.71
22 23 2.046023 CTGCACGGCCATGGAGAA 60.046 61.111 16.08 0.00 40.28 2.87
23 24 2.046023 TGCACGGCCATGGAGAAG 60.046 61.111 18.40 5.25 0.00 2.85
24 25 2.045926 GCACGGCCATGGAGAAGT 60.046 61.111 18.40 5.95 0.00 3.01
25 26 2.109126 GCACGGCCATGGAGAAGTC 61.109 63.158 18.40 0.00 0.00 3.01
26 27 1.811266 CACGGCCATGGAGAAGTCG 60.811 63.158 18.40 10.77 0.00 4.18
27 28 2.283529 ACGGCCATGGAGAAGTCGT 61.284 57.895 18.40 11.41 0.00 4.34
28 29 1.519455 CGGCCATGGAGAAGTCGTC 60.519 63.158 18.40 0.00 0.00 4.20
29 30 1.596934 GGCCATGGAGAAGTCGTCA 59.403 57.895 18.40 0.00 0.00 4.35
30 31 0.460987 GGCCATGGAGAAGTCGTCAG 60.461 60.000 18.40 0.00 0.00 3.51
31 32 0.460987 GCCATGGAGAAGTCGTCAGG 60.461 60.000 18.40 0.00 0.00 3.86
32 33 0.898320 CCATGGAGAAGTCGTCAGGT 59.102 55.000 5.56 0.00 0.00 4.00
33 34 1.134965 CCATGGAGAAGTCGTCAGGTC 60.135 57.143 5.56 0.00 0.00 3.85
34 35 1.134965 CATGGAGAAGTCGTCAGGTCC 60.135 57.143 0.00 0.00 0.00 4.46
35 36 1.241990 TGGAGAAGTCGTCAGGTCCG 61.242 60.000 0.00 0.00 0.00 4.79
36 37 1.507174 GAGAAGTCGTCAGGTCCGG 59.493 63.158 0.00 0.00 0.00 5.14
37 38 2.126031 GAAGTCGTCAGGTCCGGC 60.126 66.667 0.00 0.00 0.00 6.13
38 39 2.915659 AAGTCGTCAGGTCCGGCA 60.916 61.111 0.00 0.00 30.99 5.69
39 40 2.430382 GAAGTCGTCAGGTCCGGCAA 62.430 60.000 0.00 0.00 30.99 4.52
40 41 2.432628 GTCGTCAGGTCCGGCAAG 60.433 66.667 0.00 0.00 0.00 4.01
41 42 2.915659 TCGTCAGGTCCGGCAAGT 60.916 61.111 0.00 0.00 0.00 3.16
42 43 2.030562 CGTCAGGTCCGGCAAGTT 59.969 61.111 0.00 0.00 0.00 2.66
43 44 1.597027 CGTCAGGTCCGGCAAGTTT 60.597 57.895 0.00 0.00 0.00 2.66
44 45 1.164041 CGTCAGGTCCGGCAAGTTTT 61.164 55.000 0.00 0.00 0.00 2.43
45 46 0.310854 GTCAGGTCCGGCAAGTTTTG 59.689 55.000 0.00 0.00 0.00 2.44
46 47 0.181587 TCAGGTCCGGCAAGTTTTGA 59.818 50.000 0.00 0.00 0.00 2.69
47 48 0.593128 CAGGTCCGGCAAGTTTTGAG 59.407 55.000 0.00 0.00 0.00 3.02
48 49 1.172812 AGGTCCGGCAAGTTTTGAGC 61.173 55.000 0.00 0.00 0.00 4.26
49 50 1.452145 GGTCCGGCAAGTTTTGAGCA 61.452 55.000 0.00 0.00 0.00 4.26
50 51 0.383949 GTCCGGCAAGTTTTGAGCAA 59.616 50.000 0.00 0.00 0.00 3.91
51 52 1.000274 GTCCGGCAAGTTTTGAGCAAT 60.000 47.619 0.00 0.00 0.00 3.56
52 53 1.000385 TCCGGCAAGTTTTGAGCAATG 60.000 47.619 0.00 0.00 0.00 2.82
53 54 1.421382 CGGCAAGTTTTGAGCAATGG 58.579 50.000 0.00 0.00 0.00 3.16
54 55 1.150827 GGCAAGTTTTGAGCAATGGC 58.849 50.000 0.00 0.00 41.61 4.40
61 62 2.228389 TTTGAGCAATGGCGGCCATG 62.228 55.000 33.56 25.78 44.40 3.66
62 63 3.908081 GAGCAATGGCGGCCATGG 61.908 66.667 33.56 30.99 44.40 3.66
65 66 4.215742 CAATGGCGGCCATGGCTG 62.216 66.667 36.88 36.88 44.40 4.85
75 76 4.790962 CATGGCTGCGTCCCTGCT 62.791 66.667 0.00 0.00 38.35 4.24
76 77 4.790962 ATGGCTGCGTCCCTGCTG 62.791 66.667 0.00 0.00 38.35 4.41
83 84 4.662961 CGTCCCTGCTGCGACACA 62.663 66.667 8.81 0.00 0.00 3.72
94 95 2.140065 TGCGACACAGAGAAAGACAG 57.860 50.000 0.00 0.00 0.00 3.51
95 96 1.681264 TGCGACACAGAGAAAGACAGA 59.319 47.619 0.00 0.00 0.00 3.41
96 97 2.287849 TGCGACACAGAGAAAGACAGAG 60.288 50.000 0.00 0.00 0.00 3.35
97 98 2.924454 GCGACACAGAGAAAGACAGAGG 60.924 54.545 0.00 0.00 0.00 3.69
98 99 2.554462 CGACACAGAGAAAGACAGAGGA 59.446 50.000 0.00 0.00 0.00 3.71
99 100 3.004839 CGACACAGAGAAAGACAGAGGAA 59.995 47.826 0.00 0.00 0.00 3.36
100 101 4.499865 CGACACAGAGAAAGACAGAGGAAA 60.500 45.833 0.00 0.00 0.00 3.13
101 102 4.954875 ACACAGAGAAAGACAGAGGAAAG 58.045 43.478 0.00 0.00 0.00 2.62
102 103 4.202305 ACACAGAGAAAGACAGAGGAAAGG 60.202 45.833 0.00 0.00 0.00 3.11
103 104 3.326297 ACAGAGAAAGACAGAGGAAAGGG 59.674 47.826 0.00 0.00 0.00 3.95
104 105 3.326297 CAGAGAAAGACAGAGGAAAGGGT 59.674 47.826 0.00 0.00 0.00 4.34
105 106 3.977326 AGAGAAAGACAGAGGAAAGGGTT 59.023 43.478 0.00 0.00 0.00 4.11
106 107 4.068599 GAGAAAGACAGAGGAAAGGGTTG 58.931 47.826 0.00 0.00 0.00 3.77
107 108 3.716872 AGAAAGACAGAGGAAAGGGTTGA 59.283 43.478 0.00 0.00 0.00 3.18
108 109 3.778954 AAGACAGAGGAAAGGGTTGAG 57.221 47.619 0.00 0.00 0.00 3.02
109 110 1.349357 AGACAGAGGAAAGGGTTGAGC 59.651 52.381 0.00 0.00 0.00 4.26
110 111 1.072331 GACAGAGGAAAGGGTTGAGCA 59.928 52.381 0.00 0.00 0.00 4.26
111 112 1.072965 ACAGAGGAAAGGGTTGAGCAG 59.927 52.381 0.00 0.00 0.00 4.24
112 113 0.695347 AGAGGAAAGGGTTGAGCAGG 59.305 55.000 0.00 0.00 0.00 4.85
113 114 0.693049 GAGGAAAGGGTTGAGCAGGA 59.307 55.000 0.00 0.00 0.00 3.86
114 115 0.695347 AGGAAAGGGTTGAGCAGGAG 59.305 55.000 0.00 0.00 0.00 3.69
115 116 0.693049 GGAAAGGGTTGAGCAGGAGA 59.307 55.000 0.00 0.00 0.00 3.71
116 117 1.339535 GGAAAGGGTTGAGCAGGAGAG 60.340 57.143 0.00 0.00 0.00 3.20
117 118 0.695347 AAAGGGTTGAGCAGGAGAGG 59.305 55.000 0.00 0.00 0.00 3.69
118 119 0.178891 AAGGGTTGAGCAGGAGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
119 120 0.617249 AGGGTTGAGCAGGAGAGGAG 60.617 60.000 0.00 0.00 0.00 3.69
120 121 1.621672 GGGTTGAGCAGGAGAGGAGG 61.622 65.000 0.00 0.00 0.00 4.30
121 122 1.621672 GGTTGAGCAGGAGAGGAGGG 61.622 65.000 0.00 0.00 0.00 4.30
122 123 0.616111 GTTGAGCAGGAGAGGAGGGA 60.616 60.000 0.00 0.00 0.00 4.20
123 124 0.325110 TTGAGCAGGAGAGGAGGGAG 60.325 60.000 0.00 0.00 0.00 4.30
124 125 2.042025 AGCAGGAGAGGAGGGAGC 60.042 66.667 0.00 0.00 0.00 4.70
125 126 2.364842 GCAGGAGAGGAGGGAGCA 60.365 66.667 0.00 0.00 0.00 4.26
126 127 2.433994 GCAGGAGAGGAGGGAGCAG 61.434 68.421 0.00 0.00 0.00 4.24
127 128 1.761667 CAGGAGAGGAGGGAGCAGG 60.762 68.421 0.00 0.00 0.00 4.85
128 129 1.938596 AGGAGAGGAGGGAGCAGGA 60.939 63.158 0.00 0.00 0.00 3.86
129 130 1.457455 GGAGAGGAGGGAGCAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
130 131 1.309688 GAGAGGAGGGAGCAGGAGT 59.690 63.158 0.00 0.00 0.00 3.85
131 132 0.325203 GAGAGGAGGGAGCAGGAGTT 60.325 60.000 0.00 0.00 0.00 3.01
132 133 1.011595 AGAGGAGGGAGCAGGAGTTA 58.988 55.000 0.00 0.00 0.00 2.24
133 134 1.362932 AGAGGAGGGAGCAGGAGTTAA 59.637 52.381 0.00 0.00 0.00 2.01
134 135 2.022527 AGAGGAGGGAGCAGGAGTTAAT 60.023 50.000 0.00 0.00 0.00 1.40
135 136 2.774809 GAGGAGGGAGCAGGAGTTAATT 59.225 50.000 0.00 0.00 0.00 1.40
136 137 2.507471 AGGAGGGAGCAGGAGTTAATTG 59.493 50.000 0.00 0.00 0.00 2.32
137 138 2.293170 GAGGGAGCAGGAGTTAATTGC 58.707 52.381 0.00 0.00 38.09 3.56
138 139 1.635487 AGGGAGCAGGAGTTAATTGCA 59.365 47.619 0.00 0.00 40.22 4.08
139 140 2.041620 AGGGAGCAGGAGTTAATTGCAA 59.958 45.455 0.00 0.00 40.22 4.08
140 141 2.424956 GGGAGCAGGAGTTAATTGCAAG 59.575 50.000 4.94 0.00 40.22 4.01
141 142 3.347216 GGAGCAGGAGTTAATTGCAAGA 58.653 45.455 4.94 0.00 40.22 3.02
142 143 3.758554 GGAGCAGGAGTTAATTGCAAGAA 59.241 43.478 4.94 0.00 40.22 2.52
143 144 4.218417 GGAGCAGGAGTTAATTGCAAGAAA 59.782 41.667 4.94 0.00 40.22 2.52
144 145 5.126396 AGCAGGAGTTAATTGCAAGAAAC 57.874 39.130 15.43 15.43 40.22 2.78
145 146 4.829492 AGCAGGAGTTAATTGCAAGAAACT 59.171 37.500 22.42 22.42 40.22 2.66
146 147 6.003950 AGCAGGAGTTAATTGCAAGAAACTA 58.996 36.000 22.32 1.32 40.22 2.24
147 148 6.072452 AGCAGGAGTTAATTGCAAGAAACTAC 60.072 38.462 22.61 22.61 40.22 2.73
148 149 6.612306 CAGGAGTTAATTGCAAGAAACTACC 58.388 40.000 24.82 23.07 33.98 3.18
149 150 6.206634 CAGGAGTTAATTGCAAGAAACTACCA 59.793 38.462 24.82 0.00 33.98 3.25
150 151 6.206829 AGGAGTTAATTGCAAGAAACTACCAC 59.793 38.462 24.82 16.68 33.98 4.16
151 152 6.016610 GGAGTTAATTGCAAGAAACTACCACA 60.017 38.462 22.32 0.00 32.51 4.17
152 153 6.735130 AGTTAATTGCAAGAAACTACCACAC 58.265 36.000 21.43 0.40 30.62 3.82
153 154 6.546034 AGTTAATTGCAAGAAACTACCACACT 59.454 34.615 21.43 2.34 30.62 3.55
154 155 5.852282 AATTGCAAGAAACTACCACACTT 57.148 34.783 4.94 0.00 0.00 3.16
155 156 4.893424 TTGCAAGAAACTACCACACTTC 57.107 40.909 0.00 0.00 0.00 3.01
156 157 2.869801 TGCAAGAAACTACCACACTTCG 59.130 45.455 0.00 0.00 0.00 3.79
157 158 2.223377 GCAAGAAACTACCACACTTCGG 59.777 50.000 0.00 0.00 0.00 4.30
158 159 2.165319 AGAAACTACCACACTTCGGC 57.835 50.000 0.00 0.00 0.00 5.54
159 160 1.414919 AGAAACTACCACACTTCGGCA 59.585 47.619 0.00 0.00 0.00 5.69
160 161 1.529865 GAAACTACCACACTTCGGCAC 59.470 52.381 0.00 0.00 0.00 5.01
185 186 7.823149 GTTGTAACGAATCAGTACCATTAGT 57.177 36.000 0.00 0.00 0.00 2.24
186 187 7.892803 GTTGTAACGAATCAGTACCATTAGTC 58.107 38.462 0.00 0.00 0.00 2.59
187 188 7.160547 TGTAACGAATCAGTACCATTAGTCA 57.839 36.000 0.00 0.00 0.00 3.41
188 189 7.778083 TGTAACGAATCAGTACCATTAGTCAT 58.222 34.615 0.00 0.00 0.00 3.06
189 190 8.255206 TGTAACGAATCAGTACCATTAGTCATT 58.745 33.333 0.00 0.00 0.00 2.57
190 191 9.095065 GTAACGAATCAGTACCATTAGTCATTT 57.905 33.333 0.00 0.00 0.00 2.32
191 192 8.561738 AACGAATCAGTACCATTAGTCATTTT 57.438 30.769 0.00 0.00 0.00 1.82
192 193 8.561738 ACGAATCAGTACCATTAGTCATTTTT 57.438 30.769 0.00 0.00 0.00 1.94
210 211 2.810439 TTTTGCCATGCAGTACCAAC 57.190 45.000 0.00 0.00 40.61 3.77
211 212 1.993956 TTTGCCATGCAGTACCAACT 58.006 45.000 0.00 0.00 40.61 3.16
212 213 1.533625 TTGCCATGCAGTACCAACTC 58.466 50.000 0.00 0.00 40.61 3.01
213 214 0.692476 TGCCATGCAGTACCAACTCT 59.308 50.000 0.00 0.00 31.97 3.24
214 215 1.905894 TGCCATGCAGTACCAACTCTA 59.094 47.619 0.00 0.00 31.97 2.43
215 216 2.304470 TGCCATGCAGTACCAACTCTAA 59.696 45.455 0.00 0.00 31.97 2.10
216 217 2.939103 GCCATGCAGTACCAACTCTAAG 59.061 50.000 0.00 0.00 31.97 2.18
217 218 3.619979 GCCATGCAGTACCAACTCTAAGT 60.620 47.826 0.00 0.00 31.97 2.24
218 219 4.184629 CCATGCAGTACCAACTCTAAGTC 58.815 47.826 0.00 0.00 31.97 3.01
219 220 4.081420 CCATGCAGTACCAACTCTAAGTCT 60.081 45.833 0.00 0.00 31.97 3.24
220 221 5.127194 CCATGCAGTACCAACTCTAAGTCTA 59.873 44.000 0.00 0.00 31.97 2.59
221 222 6.351033 CCATGCAGTACCAACTCTAAGTCTAA 60.351 42.308 0.00 0.00 31.97 2.10
222 223 6.268825 TGCAGTACCAACTCTAAGTCTAAG 57.731 41.667 0.00 0.00 31.97 2.18
223 224 5.773680 TGCAGTACCAACTCTAAGTCTAAGT 59.226 40.000 0.00 0.00 31.97 2.24
224 225 6.094061 GCAGTACCAACTCTAAGTCTAAGTG 58.906 44.000 0.00 0.00 31.97 3.16
225 226 6.294620 GCAGTACCAACTCTAAGTCTAAGTGT 60.295 42.308 0.00 0.00 31.97 3.55
226 227 7.659186 CAGTACCAACTCTAAGTCTAAGTGTT 58.341 38.462 0.00 0.00 31.97 3.32
227 228 7.595502 CAGTACCAACTCTAAGTCTAAGTGTTG 59.404 40.741 9.79 9.79 43.24 3.33
228 229 6.481434 ACCAACTCTAAGTCTAAGTGTTGT 57.519 37.500 13.69 3.77 42.60 3.32
229 230 6.885922 ACCAACTCTAAGTCTAAGTGTTGTT 58.114 36.000 13.69 1.40 42.60 2.83
230 231 8.015185 ACCAACTCTAAGTCTAAGTGTTGTTA 57.985 34.615 13.69 0.00 42.60 2.41
231 232 8.648693 ACCAACTCTAAGTCTAAGTGTTGTTAT 58.351 33.333 13.69 1.51 42.60 1.89
232 233 9.490379 CCAACTCTAAGTCTAAGTGTTGTTATT 57.510 33.333 13.69 0.00 42.60 1.40
297 298 5.379187 AGATGGATGCATATGCTGTGTTTA 58.621 37.500 27.13 6.67 42.66 2.01
313 314 9.270640 TGCTGTGTTTAATTTTGCTAAATGATT 57.729 25.926 6.89 0.00 34.27 2.57
521 522 4.357018 TGCAAATTTGTGTGTGTACGAA 57.643 36.364 19.03 0.00 0.00 3.85
602 604 9.807921 AATACATGAAAAAGAAAGGAGGTAGAA 57.192 29.630 0.00 0.00 0.00 2.10
836 849 9.028185 ACGTTATAAGAAATTAATCGGTCAGTC 57.972 33.333 0.00 0.00 0.00 3.51
872 886 9.997482 GGAGCAGTAATTTAATCGTTCAATTTA 57.003 29.630 0.00 0.00 0.00 1.40
1029 1043 6.035112 GTCTACCGCTTACAAGAAAAGATCTG 59.965 42.308 0.00 0.00 38.79 2.90
1353 1367 2.768527 AGCTTCTCACTTGCTATGGCTA 59.231 45.455 1.68 0.00 39.59 3.93
1691 1713 5.810587 TGTTACGAGCTTCTGGAATACAATC 59.189 40.000 0.00 0.00 0.00 2.67
1780 1802 1.131638 AGGGGATTCATTAGCTCGCA 58.868 50.000 0.00 0.00 0.00 5.10
1781 1803 1.490490 AGGGGATTCATTAGCTCGCAA 59.510 47.619 0.00 0.00 0.00 4.85
1878 1903 6.583562 ACCTTATGAGAATTTAGAAGTCCGG 58.416 40.000 0.00 0.00 0.00 5.14
1995 2023 6.797454 AGAGGTTTATGTAAGAGTAGAAGCG 58.203 40.000 0.00 0.00 0.00 4.68
2367 2395 3.301379 GCGTCGATACAACAACGTATTGA 59.699 43.478 16.92 0.13 39.10 2.57
2370 2398 5.228427 CGTCGATACAACAACGTATTGATCA 59.772 40.000 16.92 0.00 41.89 2.92
2387 2415 1.151760 TCATGAATATGCTGGCCCCT 58.848 50.000 0.00 0.00 34.21 4.79
2738 2766 4.230657 GCTAGCAATATCTCTACGTGTGG 58.769 47.826 10.63 0.00 0.00 4.17
2997 3029 3.823873 TCTTGAAGCGGCCAAGAATAAAA 59.176 39.130 16.11 0.00 44.74 1.52
3107 3144 4.657039 AGTTAGTGAAGGGTTAGGAACACA 59.343 41.667 0.00 0.00 37.23 3.72
3110 3147 4.461198 AGTGAAGGGTTAGGAACACAAAG 58.539 43.478 0.00 0.00 37.23 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.741985 CATGGCCGTGCAGTTCGA 60.742 61.111 13.11 0.00 0.00 3.71
1 2 3.803082 CCATGGCCGTGCAGTTCG 61.803 66.667 20.27 0.44 0.00 3.95
2 3 2.359850 TCCATGGCCGTGCAGTTC 60.360 61.111 20.27 0.00 0.00 3.01
3 4 2.360350 CTCCATGGCCGTGCAGTT 60.360 61.111 20.27 0.00 0.00 3.16
4 5 2.809861 CTTCTCCATGGCCGTGCAGT 62.810 60.000 20.27 0.00 0.00 4.40
5 6 2.046023 TTCTCCATGGCCGTGCAG 60.046 61.111 20.27 15.20 0.00 4.41
6 7 2.046023 CTTCTCCATGGCCGTGCA 60.046 61.111 20.27 3.27 0.00 4.57
7 8 2.045926 ACTTCTCCATGGCCGTGC 60.046 61.111 20.27 0.00 0.00 5.34
8 9 1.811266 CGACTTCTCCATGGCCGTG 60.811 63.158 18.73 18.73 0.00 4.94
9 10 2.227089 GACGACTTCTCCATGGCCGT 62.227 60.000 6.96 9.12 0.00 5.68
10 11 1.519455 GACGACTTCTCCATGGCCG 60.519 63.158 6.96 5.96 0.00 6.13
11 12 0.460987 CTGACGACTTCTCCATGGCC 60.461 60.000 6.96 0.00 0.00 5.36
12 13 0.460987 CCTGACGACTTCTCCATGGC 60.461 60.000 6.96 0.00 0.00 4.40
13 14 0.898320 ACCTGACGACTTCTCCATGG 59.102 55.000 4.97 4.97 0.00 3.66
14 15 1.134965 GGACCTGACGACTTCTCCATG 60.135 57.143 0.00 0.00 0.00 3.66
15 16 1.187087 GGACCTGACGACTTCTCCAT 58.813 55.000 0.00 0.00 0.00 3.41
16 17 1.241990 CGGACCTGACGACTTCTCCA 61.242 60.000 0.00 0.00 0.00 3.86
17 18 1.507174 CGGACCTGACGACTTCTCC 59.493 63.158 0.00 0.00 0.00 3.71
18 19 1.507174 CCGGACCTGACGACTTCTC 59.493 63.158 0.00 0.00 0.00 2.87
19 20 2.637383 GCCGGACCTGACGACTTCT 61.637 63.158 5.05 0.00 0.00 2.85
20 21 2.126031 GCCGGACCTGACGACTTC 60.126 66.667 5.05 0.00 0.00 3.01
21 22 2.436087 CTTGCCGGACCTGACGACTT 62.436 60.000 5.05 0.00 0.00 3.01
22 23 2.915659 TTGCCGGACCTGACGACT 60.916 61.111 5.05 0.00 0.00 4.18
23 24 2.432628 CTTGCCGGACCTGACGAC 60.433 66.667 5.05 0.00 0.00 4.34
24 25 2.035237 AAACTTGCCGGACCTGACGA 62.035 55.000 5.05 0.00 0.00 4.20
25 26 1.164041 AAAACTTGCCGGACCTGACG 61.164 55.000 5.05 0.00 0.00 4.35
26 27 0.310854 CAAAACTTGCCGGACCTGAC 59.689 55.000 5.05 0.00 0.00 3.51
27 28 0.181587 TCAAAACTTGCCGGACCTGA 59.818 50.000 5.05 0.00 0.00 3.86
28 29 0.593128 CTCAAAACTTGCCGGACCTG 59.407 55.000 5.05 0.00 0.00 4.00
29 30 1.172812 GCTCAAAACTTGCCGGACCT 61.173 55.000 5.05 0.00 0.00 3.85
30 31 1.285950 GCTCAAAACTTGCCGGACC 59.714 57.895 5.05 0.00 0.00 4.46
31 32 0.383949 TTGCTCAAAACTTGCCGGAC 59.616 50.000 5.05 0.00 0.00 4.79
32 33 1.000385 CATTGCTCAAAACTTGCCGGA 60.000 47.619 5.05 0.00 0.00 5.14
33 34 1.421382 CATTGCTCAAAACTTGCCGG 58.579 50.000 0.00 0.00 0.00 6.13
34 35 1.421382 CCATTGCTCAAAACTTGCCG 58.579 50.000 0.00 0.00 0.00 5.69
35 36 1.150827 GCCATTGCTCAAAACTTGCC 58.849 50.000 0.00 0.00 33.53 4.52
36 37 0.785979 CGCCATTGCTCAAAACTTGC 59.214 50.000 0.00 0.00 34.43 4.01
37 38 1.421382 CCGCCATTGCTCAAAACTTG 58.579 50.000 0.00 0.00 34.43 3.16
38 39 0.319813 GCCGCCATTGCTCAAAACTT 60.320 50.000 0.00 0.00 34.43 2.66
39 40 1.290009 GCCGCCATTGCTCAAAACT 59.710 52.632 0.00 0.00 34.43 2.66
40 41 1.737735 GGCCGCCATTGCTCAAAAC 60.738 57.895 3.91 0.00 34.43 2.43
41 42 1.543065 ATGGCCGCCATTGCTCAAAA 61.543 50.000 19.79 0.00 42.23 2.44
42 43 1.983481 ATGGCCGCCATTGCTCAAA 60.983 52.632 19.79 0.00 42.23 2.69
43 44 2.362760 ATGGCCGCCATTGCTCAA 60.363 55.556 19.79 0.00 42.23 3.02
44 45 3.142162 CATGGCCGCCATTGCTCA 61.142 61.111 22.88 0.00 42.23 4.26
45 46 3.908081 CCATGGCCGCCATTGCTC 61.908 66.667 22.88 0.00 42.23 4.26
48 49 4.215742 CAGCCATGGCCGCCATTG 62.216 66.667 33.14 19.86 42.23 2.82
58 59 4.790962 AGCAGGGACGCAGCCATG 62.791 66.667 3.17 2.41 42.38 3.66
59 60 4.790962 CAGCAGGGACGCAGCCAT 62.791 66.667 3.17 0.00 0.00 4.40
68 69 2.917227 TCTGTGTCGCAGCAGGGA 60.917 61.111 8.61 0.00 44.66 4.20
69 70 2.433838 CTCTGTGTCGCAGCAGGG 60.434 66.667 8.61 0.00 44.66 4.45
70 71 0.601046 TTTCTCTGTGTCGCAGCAGG 60.601 55.000 8.61 2.15 44.66 4.85
71 72 0.788995 CTTTCTCTGTGTCGCAGCAG 59.211 55.000 8.61 7.38 44.66 4.24
72 73 0.389025 TCTTTCTCTGTGTCGCAGCA 59.611 50.000 8.61 0.00 44.66 4.41
73 74 0.787183 GTCTTTCTCTGTGTCGCAGC 59.213 55.000 8.61 0.00 44.66 5.25
74 75 2.057316 CTGTCTTTCTCTGTGTCGCAG 58.943 52.381 7.09 7.09 46.34 5.18
75 76 1.681264 TCTGTCTTTCTCTGTGTCGCA 59.319 47.619 0.00 0.00 0.00 5.10
76 77 2.323959 CTCTGTCTTTCTCTGTGTCGC 58.676 52.381 0.00 0.00 0.00 5.19
77 78 2.554462 TCCTCTGTCTTTCTCTGTGTCG 59.446 50.000 0.00 0.00 0.00 4.35
78 79 4.592485 TTCCTCTGTCTTTCTCTGTGTC 57.408 45.455 0.00 0.00 0.00 3.67
79 80 4.202305 CCTTTCCTCTGTCTTTCTCTGTGT 60.202 45.833 0.00 0.00 0.00 3.72
80 81 4.314121 CCTTTCCTCTGTCTTTCTCTGTG 58.686 47.826 0.00 0.00 0.00 3.66
81 82 3.326297 CCCTTTCCTCTGTCTTTCTCTGT 59.674 47.826 0.00 0.00 0.00 3.41
82 83 3.326297 ACCCTTTCCTCTGTCTTTCTCTG 59.674 47.826 0.00 0.00 0.00 3.35
83 84 3.592865 ACCCTTTCCTCTGTCTTTCTCT 58.407 45.455 0.00 0.00 0.00 3.10
84 85 4.068599 CAACCCTTTCCTCTGTCTTTCTC 58.931 47.826 0.00 0.00 0.00 2.87
85 86 3.716872 TCAACCCTTTCCTCTGTCTTTCT 59.283 43.478 0.00 0.00 0.00 2.52
86 87 4.068599 CTCAACCCTTTCCTCTGTCTTTC 58.931 47.826 0.00 0.00 0.00 2.62
87 88 3.748989 GCTCAACCCTTTCCTCTGTCTTT 60.749 47.826 0.00 0.00 0.00 2.52
88 89 2.224646 GCTCAACCCTTTCCTCTGTCTT 60.225 50.000 0.00 0.00 0.00 3.01
89 90 1.349357 GCTCAACCCTTTCCTCTGTCT 59.651 52.381 0.00 0.00 0.00 3.41
90 91 1.072331 TGCTCAACCCTTTCCTCTGTC 59.928 52.381 0.00 0.00 0.00 3.51
91 92 1.072965 CTGCTCAACCCTTTCCTCTGT 59.927 52.381 0.00 0.00 0.00 3.41
92 93 1.612726 CCTGCTCAACCCTTTCCTCTG 60.613 57.143 0.00 0.00 0.00 3.35
93 94 0.695347 CCTGCTCAACCCTTTCCTCT 59.305 55.000 0.00 0.00 0.00 3.69
94 95 0.693049 TCCTGCTCAACCCTTTCCTC 59.307 55.000 0.00 0.00 0.00 3.71
95 96 0.695347 CTCCTGCTCAACCCTTTCCT 59.305 55.000 0.00 0.00 0.00 3.36
96 97 0.693049 TCTCCTGCTCAACCCTTTCC 59.307 55.000 0.00 0.00 0.00 3.13
97 98 1.339535 CCTCTCCTGCTCAACCCTTTC 60.340 57.143 0.00 0.00 0.00 2.62
98 99 0.695347 CCTCTCCTGCTCAACCCTTT 59.305 55.000 0.00 0.00 0.00 3.11
99 100 0.178891 TCCTCTCCTGCTCAACCCTT 60.179 55.000 0.00 0.00 0.00 3.95
100 101 0.617249 CTCCTCTCCTGCTCAACCCT 60.617 60.000 0.00 0.00 0.00 4.34
101 102 1.621672 CCTCCTCTCCTGCTCAACCC 61.622 65.000 0.00 0.00 0.00 4.11
102 103 1.621672 CCCTCCTCTCCTGCTCAACC 61.622 65.000 0.00 0.00 0.00 3.77
103 104 0.616111 TCCCTCCTCTCCTGCTCAAC 60.616 60.000 0.00 0.00 0.00 3.18
104 105 0.325110 CTCCCTCCTCTCCTGCTCAA 60.325 60.000 0.00 0.00 0.00 3.02
105 106 1.309347 CTCCCTCCTCTCCTGCTCA 59.691 63.158 0.00 0.00 0.00 4.26
106 107 2.133641 GCTCCCTCCTCTCCTGCTC 61.134 68.421 0.00 0.00 0.00 4.26
107 108 2.042025 GCTCCCTCCTCTCCTGCT 60.042 66.667 0.00 0.00 0.00 4.24
108 109 2.364842 TGCTCCCTCCTCTCCTGC 60.365 66.667 0.00 0.00 0.00 4.85
109 110 1.761667 CCTGCTCCCTCCTCTCCTG 60.762 68.421 0.00 0.00 0.00 3.86
110 111 1.938596 TCCTGCTCCCTCCTCTCCT 60.939 63.158 0.00 0.00 0.00 3.69
111 112 1.457455 CTCCTGCTCCCTCCTCTCC 60.457 68.421 0.00 0.00 0.00 3.71
112 113 0.325203 AACTCCTGCTCCCTCCTCTC 60.325 60.000 0.00 0.00 0.00 3.20
113 114 1.011595 TAACTCCTGCTCCCTCCTCT 58.988 55.000 0.00 0.00 0.00 3.69
114 115 1.867363 TTAACTCCTGCTCCCTCCTC 58.133 55.000 0.00 0.00 0.00 3.71
115 116 2.507471 CAATTAACTCCTGCTCCCTCCT 59.493 50.000 0.00 0.00 0.00 3.69
116 117 2.924421 CAATTAACTCCTGCTCCCTCC 58.076 52.381 0.00 0.00 0.00 4.30
117 118 2.293170 GCAATTAACTCCTGCTCCCTC 58.707 52.381 0.00 0.00 33.20 4.30
118 119 1.635487 TGCAATTAACTCCTGCTCCCT 59.365 47.619 0.00 0.00 37.00 4.20
119 120 2.128771 TGCAATTAACTCCTGCTCCC 57.871 50.000 0.00 0.00 37.00 4.30
120 121 3.347216 TCTTGCAATTAACTCCTGCTCC 58.653 45.455 0.00 0.00 37.00 4.70
121 122 5.048434 AGTTTCTTGCAATTAACTCCTGCTC 60.048 40.000 16.38 0.00 37.00 4.26
122 123 4.829492 AGTTTCTTGCAATTAACTCCTGCT 59.171 37.500 16.38 0.12 37.00 4.24
123 124 5.126396 AGTTTCTTGCAATTAACTCCTGC 57.874 39.130 16.38 0.00 36.60 4.85
124 125 6.206634 TGGTAGTTTCTTGCAATTAACTCCTG 59.793 38.462 22.30 0.76 33.28 3.86
125 126 6.206829 GTGGTAGTTTCTTGCAATTAACTCCT 59.793 38.462 22.30 8.56 33.28 3.69
126 127 6.016610 TGTGGTAGTTTCTTGCAATTAACTCC 60.017 38.462 22.30 21.22 33.28 3.85
127 128 6.856426 GTGTGGTAGTTTCTTGCAATTAACTC 59.144 38.462 22.30 15.92 33.28 3.01
128 129 6.546034 AGTGTGGTAGTTTCTTGCAATTAACT 59.454 34.615 22.29 22.29 35.25 2.24
129 130 6.735130 AGTGTGGTAGTTTCTTGCAATTAAC 58.265 36.000 0.00 7.62 0.00 2.01
130 131 6.952773 AGTGTGGTAGTTTCTTGCAATTAA 57.047 33.333 0.00 0.00 0.00 1.40
131 132 6.293190 CGAAGTGTGGTAGTTTCTTGCAATTA 60.293 38.462 0.00 0.00 0.00 1.40
132 133 5.505654 CGAAGTGTGGTAGTTTCTTGCAATT 60.506 40.000 0.00 0.00 0.00 2.32
133 134 4.024048 CGAAGTGTGGTAGTTTCTTGCAAT 60.024 41.667 0.00 0.00 0.00 3.56
134 135 3.311322 CGAAGTGTGGTAGTTTCTTGCAA 59.689 43.478 0.00 0.00 0.00 4.08
135 136 2.869801 CGAAGTGTGGTAGTTTCTTGCA 59.130 45.455 0.00 0.00 0.00 4.08
136 137 2.223377 CCGAAGTGTGGTAGTTTCTTGC 59.777 50.000 0.00 0.00 0.00 4.01
137 138 2.223377 GCCGAAGTGTGGTAGTTTCTTG 59.777 50.000 0.00 0.00 0.00 3.02
138 139 2.158871 TGCCGAAGTGTGGTAGTTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
139 140 1.414919 TGCCGAAGTGTGGTAGTTTCT 59.585 47.619 0.00 0.00 0.00 2.52
140 141 1.529865 GTGCCGAAGTGTGGTAGTTTC 59.470 52.381 0.00 0.00 0.00 2.78
141 142 1.589803 GTGCCGAAGTGTGGTAGTTT 58.410 50.000 0.00 0.00 0.00 2.66
142 143 0.599204 CGTGCCGAAGTGTGGTAGTT 60.599 55.000 0.00 0.00 0.00 2.24
143 144 1.006571 CGTGCCGAAGTGTGGTAGT 60.007 57.895 0.00 0.00 0.00 2.73
144 145 0.599204 AACGTGCCGAAGTGTGGTAG 60.599 55.000 0.00 0.00 0.00 3.18
145 146 0.876777 CAACGTGCCGAAGTGTGGTA 60.877 55.000 0.00 0.00 0.00 3.25
146 147 2.177580 CAACGTGCCGAAGTGTGGT 61.178 57.895 0.00 0.00 0.00 4.16
147 148 0.876777 TACAACGTGCCGAAGTGTGG 60.877 55.000 0.00 0.00 0.00 4.17
148 149 0.931702 TTACAACGTGCCGAAGTGTG 59.068 50.000 0.00 0.00 0.00 3.82
149 150 0.932399 GTTACAACGTGCCGAAGTGT 59.068 50.000 0.00 0.00 0.00 3.55
150 151 0.111442 CGTTACAACGTGCCGAAGTG 60.111 55.000 6.34 0.00 46.63 3.16
151 152 2.218934 CGTTACAACGTGCCGAAGT 58.781 52.632 6.34 2.69 46.63 3.01
161 162 7.543172 TGACTAATGGTACTGATTCGTTACAAC 59.457 37.037 0.00 0.00 0.00 3.32
162 163 7.604549 TGACTAATGGTACTGATTCGTTACAA 58.395 34.615 0.00 0.00 0.00 2.41
163 164 7.160547 TGACTAATGGTACTGATTCGTTACA 57.839 36.000 0.00 0.00 0.00 2.41
164 165 8.644318 AATGACTAATGGTACTGATTCGTTAC 57.356 34.615 0.00 0.00 0.00 2.50
165 166 9.661563 AAAATGACTAATGGTACTGATTCGTTA 57.338 29.630 0.00 0.00 0.00 3.18
166 167 8.561738 AAAATGACTAATGGTACTGATTCGTT 57.438 30.769 0.00 0.00 0.00 3.85
167 168 8.561738 AAAAATGACTAATGGTACTGATTCGT 57.438 30.769 0.00 0.00 0.00 3.85
190 191 2.697751 AGTTGGTACTGCATGGCAAAAA 59.302 40.909 0.00 0.00 38.41 1.94
191 192 2.295909 GAGTTGGTACTGCATGGCAAAA 59.704 45.455 0.00 0.00 38.41 2.44
192 193 1.885887 GAGTTGGTACTGCATGGCAAA 59.114 47.619 0.00 0.00 38.41 3.68
193 194 1.073763 AGAGTTGGTACTGCATGGCAA 59.926 47.619 0.00 0.00 38.41 4.52
194 195 0.692476 AGAGTTGGTACTGCATGGCA 59.308 50.000 0.00 0.00 33.84 4.92
195 196 2.691409 TAGAGTTGGTACTGCATGGC 57.309 50.000 0.00 0.00 33.84 4.40
196 197 4.081420 AGACTTAGAGTTGGTACTGCATGG 60.081 45.833 0.00 0.00 33.84 3.66
197 198 5.078411 AGACTTAGAGTTGGTACTGCATG 57.922 43.478 0.00 0.00 33.84 4.06
198 199 6.437793 ACTTAGACTTAGAGTTGGTACTGCAT 59.562 38.462 0.00 0.00 33.84 3.96
199 200 5.773680 ACTTAGACTTAGAGTTGGTACTGCA 59.226 40.000 0.00 0.00 33.84 4.41
200 201 6.094061 CACTTAGACTTAGAGTTGGTACTGC 58.906 44.000 0.00 0.00 33.84 4.40
201 202 7.216973 ACACTTAGACTTAGAGTTGGTACTG 57.783 40.000 0.00 0.00 33.84 2.74
202 203 7.287235 ACAACACTTAGACTTAGAGTTGGTACT 59.713 37.037 25.29 10.09 43.77 2.73
203 204 7.432059 ACAACACTTAGACTTAGAGTTGGTAC 58.568 38.462 25.29 0.00 43.77 3.34
204 205 7.592885 ACAACACTTAGACTTAGAGTTGGTA 57.407 36.000 25.29 0.00 43.77 3.25
205 206 6.481434 ACAACACTTAGACTTAGAGTTGGT 57.519 37.500 25.29 14.21 43.77 3.67
206 207 9.490379 AATAACAACACTTAGACTTAGAGTTGG 57.510 33.333 25.29 13.77 43.77 3.77
253 254 4.992319 TCTTTTGGCTCGAGAATTTTACGA 59.008 37.500 18.75 0.00 34.90 3.43
257 258 4.766891 TCCATCTTTTGGCTCGAGAATTTT 59.233 37.500 18.75 0.00 46.01 1.82
634 637 7.066781 TCAACAGAACCCCTATTTTCTTCTTT 58.933 34.615 0.00 0.00 29.23 2.52
635 638 6.610830 TCAACAGAACCCCTATTTTCTTCTT 58.389 36.000 0.00 0.00 29.23 2.52
1029 1043 4.225942 TGAGGGCCCATATTGACTATCATC 59.774 45.833 27.56 7.83 0.00 2.92
1353 1367 2.104963 GAGATCCGCCATAAAAGGTCCT 59.895 50.000 0.00 0.00 0.00 3.85
1780 1802 7.119262 CCTCATTTCACCAACTCGTACTAATTT 59.881 37.037 0.00 0.00 0.00 1.82
1781 1803 6.594159 CCTCATTTCACCAACTCGTACTAATT 59.406 38.462 0.00 0.00 0.00 1.40
1878 1903 7.591426 TCAGAATTCTTTTCTTTCTTAAAGCGC 59.409 33.333 4.86 0.00 38.39 5.92
1975 2001 5.107133 TGGCGCTTCTACTCTTACATAAAC 58.893 41.667 7.64 0.00 0.00 2.01
1995 2023 5.420725 AAATCCCTAATTCACCTTTTGGC 57.579 39.130 0.00 0.00 45.59 4.52
2259 2287 7.162082 GGTCAAAATGGGTAGAATCGATATCT 58.838 38.462 0.00 6.83 0.00 1.98
2301 2329 7.340232 ACCACACAATTACGAGTACCTCTATTA 59.660 37.037 0.00 0.00 0.00 0.98
2367 2395 1.714787 AGGGGCCAGCATATTCATGAT 59.285 47.619 4.39 0.00 33.67 2.45
2370 2398 1.481802 CCAAGGGGCCAGCATATTCAT 60.482 52.381 4.39 0.00 0.00 2.57
2387 2415 0.332632 ATAGCTTGAAGCAGGCCCAA 59.667 50.000 20.45 0.00 45.56 4.12
3058 3095 9.540538 TTTTGGTGGATTCTTCTTATGGATTAA 57.459 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.