Multiple sequence alignment - TraesCS7B01G078200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G078200 chr7B 100.000 3741 0 0 1 3741 88245263 88241523 0.000000e+00 6909
1 TraesCS7B01G078200 chr7B 79.930 284 49 6 359 636 710132958 710133239 6.340000e-48 202
2 TraesCS7B01G078200 chr7B 79.649 285 49 6 359 636 710110253 710110535 2.950000e-46 196
3 TraesCS7B01G078200 chr7B 79.577 284 50 6 359 636 710121353 710121634 2.950000e-46 196
4 TraesCS7B01G078200 chr7A 92.444 1641 67 27 657 2289 127594556 127596147 0.000000e+00 2290
5 TraesCS7B01G078200 chr7A 96.207 580 18 3 2284 2861 127601357 127601934 0.000000e+00 946
6 TraesCS7B01G078200 chr7A 92.997 357 19 5 305 656 127594174 127594529 1.990000e-142 516
7 TraesCS7B01G078200 chr7A 80.519 308 37 18 355 650 519574295 519573999 8.140000e-52 215
8 TraesCS7B01G078200 chr7D 98.272 984 14 3 937 1919 126668718 126669699 0.000000e+00 1720
9 TraesCS7B01G078200 chr7D 98.095 945 16 1 1918 2862 126669803 126670745 0.000000e+00 1644
10 TraesCS7B01G078200 chr7D 92.054 881 60 7 2869 3741 105840165 105839287 0.000000e+00 1230
11 TraesCS7B01G078200 chr7D 90.196 357 29 4 305 656 126664524 126664879 9.470000e-126 460
12 TraesCS7B01G078200 chr7D 89.231 195 17 3 759 950 126667772 126667965 1.340000e-59 241
13 TraesCS7B01G078200 chr1D 91.705 880 67 4 2862 3741 107111489 107110616 0.000000e+00 1216
14 TraesCS7B01G078200 chr1D 91.448 877 68 6 2869 3741 107142613 107141740 0.000000e+00 1197
15 TraesCS7B01G078200 chr1D 90.326 889 72 9 2862 3741 412790572 412791455 0.000000e+00 1153
16 TraesCS7B01G078200 chr5D 91.591 880 59 6 2862 3741 195600787 195599923 0.000000e+00 1201
17 TraesCS7B01G078200 chr5D 91.053 883 64 6 2859 3741 195626935 195626068 0.000000e+00 1179
18 TraesCS7B01G078200 chr5D 91.086 875 68 7 2869 3741 246019648 246018782 0.000000e+00 1175
19 TraesCS7B01G078200 chr5D 90.671 879 66 6 2869 3741 362963548 362962680 0.000000e+00 1155
20 TraesCS7B01G078200 chr4D 90.078 897 79 7 2854 3741 315538865 315537970 0.000000e+00 1155
21 TraesCS7B01G078200 chr4D 80.968 310 41 11 354 654 417632891 417632591 2.910000e-56 230
22 TraesCS7B01G078200 chr1A 83.019 265 35 9 362 621 202043138 202042879 8.080000e-57 231
23 TraesCS7B01G078200 chr3B 80.546 293 46 9 353 636 641807748 641807458 8.140000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G078200 chr7B 88241523 88245263 3740 True 6909.00 6909 100.0000 1 3741 1 chr7B.!!$R1 3740
1 TraesCS7B01G078200 chr7A 127594174 127596147 1973 False 1403.00 2290 92.7205 305 2289 2 chr7A.!!$F2 1984
2 TraesCS7B01G078200 chr7A 127601357 127601934 577 False 946.00 946 96.2070 2284 2861 1 chr7A.!!$F1 577
3 TraesCS7B01G078200 chr7D 105839287 105840165 878 True 1230.00 1230 92.0540 2869 3741 1 chr7D.!!$R1 872
4 TraesCS7B01G078200 chr7D 126664524 126670745 6221 False 1016.25 1720 93.9485 305 2862 4 chr7D.!!$F1 2557
5 TraesCS7B01G078200 chr1D 107110616 107111489 873 True 1216.00 1216 91.7050 2862 3741 1 chr1D.!!$R1 879
6 TraesCS7B01G078200 chr1D 107141740 107142613 873 True 1197.00 1197 91.4480 2869 3741 1 chr1D.!!$R2 872
7 TraesCS7B01G078200 chr1D 412790572 412791455 883 False 1153.00 1153 90.3260 2862 3741 1 chr1D.!!$F1 879
8 TraesCS7B01G078200 chr5D 195599923 195600787 864 True 1201.00 1201 91.5910 2862 3741 1 chr5D.!!$R1 879
9 TraesCS7B01G078200 chr5D 195626068 195626935 867 True 1179.00 1179 91.0530 2859 3741 1 chr5D.!!$R2 882
10 TraesCS7B01G078200 chr5D 246018782 246019648 866 True 1175.00 1175 91.0860 2869 3741 1 chr5D.!!$R3 872
11 TraesCS7B01G078200 chr5D 362962680 362963548 868 True 1155.00 1155 90.6710 2869 3741 1 chr5D.!!$R4 872
12 TraesCS7B01G078200 chr4D 315537970 315538865 895 True 1155.00 1155 90.0780 2854 3741 1 chr4D.!!$R1 887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 291 0.034863 AGACCACTCTCGTCTCTCCC 60.035 60.000 0.00 0.0 35.68 4.30 F
314 315 0.107897 AGTGACAAGTCGCAACACCA 60.108 50.000 15.30 0.0 42.23 4.17 F
1052 4616 0.167251 CGCACGTTGGTTACCATTCC 59.833 55.000 4.38 0.0 31.53 3.01 F
2033 5738 1.070758 TGAGCTCAAGGAGTTCACCAC 59.929 52.381 15.67 0.0 43.06 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 5687 1.538512 CTCGGTTGTAACTCTGACGGA 59.461 52.381 0.0 0.0 0.00 4.69 R
2033 5738 3.411351 CGTTCACGGAGTTGCGGG 61.411 66.667 0.0 0.0 41.61 6.13 R
2658 6363 1.341285 CCTCATCAACCATCTGCCCAA 60.341 52.381 0.0 0.0 0.00 4.12 R
3174 6886 1.206072 CGTCCTCGTCTTCGTTCGT 59.794 57.895 0.0 0.0 38.33 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.760047 GTCGCGTCCATGGCTGGT 62.760 66.667 6.96 0.00 43.61 4.00
24 25 3.071837 TCGCGTCCATGGCTGGTA 61.072 61.111 6.96 0.00 43.61 3.25
25 26 2.125310 CGCGTCCATGGCTGGTAA 60.125 61.111 6.96 0.00 43.61 2.85
26 27 2.461110 CGCGTCCATGGCTGGTAAC 61.461 63.158 6.96 0.00 43.61 2.50
27 28 2.112815 GCGTCCATGGCTGGTAACC 61.113 63.158 6.96 0.00 43.61 2.85
28 29 1.602237 CGTCCATGGCTGGTAACCT 59.398 57.895 6.96 0.00 43.61 3.50
29 30 0.462047 CGTCCATGGCTGGTAACCTC 60.462 60.000 6.96 0.00 43.61 3.85
30 31 0.462047 GTCCATGGCTGGTAACCTCG 60.462 60.000 6.96 0.00 43.61 4.63
31 32 0.616395 TCCATGGCTGGTAACCTCGA 60.616 55.000 6.96 0.00 43.61 4.04
32 33 0.179073 CCATGGCTGGTAACCTCGAG 60.179 60.000 5.13 5.13 37.79 4.04
33 34 0.179073 CATGGCTGGTAACCTCGAGG 60.179 60.000 30.11 30.11 42.17 4.63
43 44 2.811317 CCTCGAGGTGAAGCGTGC 60.811 66.667 24.04 0.00 0.00 5.34
44 45 3.175240 CTCGAGGTGAAGCGTGCG 61.175 66.667 3.91 0.00 0.00 5.34
45 46 3.610791 CTCGAGGTGAAGCGTGCGA 62.611 63.158 3.91 0.00 0.00 5.10
46 47 2.733218 CGAGGTGAAGCGTGCGAA 60.733 61.111 0.00 0.00 0.00 4.70
47 48 2.720758 CGAGGTGAAGCGTGCGAAG 61.721 63.158 0.00 0.00 0.00 3.79
48 49 1.664965 GAGGTGAAGCGTGCGAAGT 60.665 57.895 0.00 0.00 0.00 3.01
49 50 1.891060 GAGGTGAAGCGTGCGAAGTG 61.891 60.000 0.00 0.00 0.00 3.16
50 51 2.127609 GTGAAGCGTGCGAAGTGC 60.128 61.111 0.00 0.00 46.70 4.40
59 60 3.470567 GCGAAGTGCGACGAGGTG 61.471 66.667 0.00 0.00 44.57 4.00
60 61 2.805353 CGAAGTGCGACGAGGTGG 60.805 66.667 0.00 0.00 44.57 4.61
61 62 2.649034 GAAGTGCGACGAGGTGGA 59.351 61.111 0.00 0.00 0.00 4.02
62 63 1.444553 GAAGTGCGACGAGGTGGAG 60.445 63.158 0.00 0.00 0.00 3.86
63 64 3.575351 AAGTGCGACGAGGTGGAGC 62.575 63.158 0.00 0.00 0.00 4.70
64 65 4.057428 GTGCGACGAGGTGGAGCT 62.057 66.667 0.00 0.00 0.00 4.09
65 66 2.360726 TGCGACGAGGTGGAGCTA 60.361 61.111 0.00 0.00 0.00 3.32
66 67 1.753078 TGCGACGAGGTGGAGCTAT 60.753 57.895 0.00 0.00 0.00 2.97
67 68 1.299468 GCGACGAGGTGGAGCTATG 60.299 63.158 0.00 0.00 0.00 2.23
68 69 1.360551 CGACGAGGTGGAGCTATGG 59.639 63.158 0.00 0.00 0.00 2.74
69 70 1.101635 CGACGAGGTGGAGCTATGGA 61.102 60.000 0.00 0.00 0.00 3.41
70 71 1.333177 GACGAGGTGGAGCTATGGAT 58.667 55.000 0.00 0.00 0.00 3.41
71 72 1.689273 GACGAGGTGGAGCTATGGATT 59.311 52.381 0.00 0.00 0.00 3.01
72 73 1.414181 ACGAGGTGGAGCTATGGATTG 59.586 52.381 0.00 0.00 0.00 2.67
73 74 1.688735 CGAGGTGGAGCTATGGATTGA 59.311 52.381 0.00 0.00 0.00 2.57
74 75 2.546795 CGAGGTGGAGCTATGGATTGAC 60.547 54.545 0.00 0.00 0.00 3.18
75 76 2.703007 GAGGTGGAGCTATGGATTGACT 59.297 50.000 0.00 0.00 0.00 3.41
76 77 3.898123 GAGGTGGAGCTATGGATTGACTA 59.102 47.826 0.00 0.00 0.00 2.59
77 78 3.900601 AGGTGGAGCTATGGATTGACTAG 59.099 47.826 0.00 0.00 0.00 2.57
78 79 3.643792 GGTGGAGCTATGGATTGACTAGT 59.356 47.826 0.00 0.00 0.00 2.57
79 80 4.101741 GGTGGAGCTATGGATTGACTAGTT 59.898 45.833 0.00 0.00 0.00 2.24
80 81 5.053145 GTGGAGCTATGGATTGACTAGTTG 58.947 45.833 0.00 0.00 0.00 3.16
81 82 4.061596 GGAGCTATGGATTGACTAGTTGC 58.938 47.826 0.00 0.00 0.00 4.17
82 83 4.443457 GGAGCTATGGATTGACTAGTTGCA 60.443 45.833 0.00 0.00 0.00 4.08
83 84 4.701765 AGCTATGGATTGACTAGTTGCAG 58.298 43.478 0.00 0.00 0.00 4.41
84 85 3.812053 GCTATGGATTGACTAGTTGCAGG 59.188 47.826 0.00 0.00 0.00 4.85
85 86 2.787473 TGGATTGACTAGTTGCAGGG 57.213 50.000 0.00 0.00 0.00 4.45
86 87 2.265367 TGGATTGACTAGTTGCAGGGA 58.735 47.619 0.00 0.00 0.00 4.20
87 88 2.846206 TGGATTGACTAGTTGCAGGGAT 59.154 45.455 0.00 0.00 0.00 3.85
88 89 3.209410 GGATTGACTAGTTGCAGGGATG 58.791 50.000 0.00 0.00 0.00 3.51
89 90 2.787473 TTGACTAGTTGCAGGGATGG 57.213 50.000 0.00 0.00 0.00 3.51
90 91 1.951209 TGACTAGTTGCAGGGATGGA 58.049 50.000 0.00 0.00 0.00 3.41
91 92 1.833630 TGACTAGTTGCAGGGATGGAG 59.166 52.381 0.00 0.00 0.00 3.86
92 93 1.834263 GACTAGTTGCAGGGATGGAGT 59.166 52.381 0.00 0.00 0.00 3.85
93 94 2.237392 GACTAGTTGCAGGGATGGAGTT 59.763 50.000 0.00 0.00 0.00 3.01
94 95 2.026822 ACTAGTTGCAGGGATGGAGTTG 60.027 50.000 0.00 0.00 0.00 3.16
95 96 1.067295 AGTTGCAGGGATGGAGTTGA 58.933 50.000 0.00 0.00 0.00 3.18
96 97 1.168714 GTTGCAGGGATGGAGTTGAC 58.831 55.000 0.00 0.00 0.00 3.18
97 98 0.770499 TTGCAGGGATGGAGTTGACA 59.230 50.000 0.00 0.00 0.00 3.58
98 99 0.994247 TGCAGGGATGGAGTTGACAT 59.006 50.000 0.00 0.00 0.00 3.06
99 100 1.340308 TGCAGGGATGGAGTTGACATG 60.340 52.381 0.00 0.00 0.00 3.21
100 101 2.020694 GCAGGGATGGAGTTGACATGG 61.021 57.143 0.00 0.00 0.00 3.66
101 102 0.921896 AGGGATGGAGTTGACATGGG 59.078 55.000 0.00 0.00 0.00 4.00
102 103 0.106519 GGGATGGAGTTGACATGGGG 60.107 60.000 0.00 0.00 0.00 4.96
103 104 0.106519 GGATGGAGTTGACATGGGGG 60.107 60.000 0.00 0.00 0.00 5.40
104 105 0.918983 GATGGAGTTGACATGGGGGA 59.081 55.000 0.00 0.00 0.00 4.81
105 106 0.921896 ATGGAGTTGACATGGGGGAG 59.078 55.000 0.00 0.00 0.00 4.30
106 107 0.475632 TGGAGTTGACATGGGGGAGT 60.476 55.000 0.00 0.00 0.00 3.85
107 108 0.698818 GGAGTTGACATGGGGGAGTT 59.301 55.000 0.00 0.00 0.00 3.01
108 109 1.913419 GGAGTTGACATGGGGGAGTTA 59.087 52.381 0.00 0.00 0.00 2.24
109 110 2.355818 GGAGTTGACATGGGGGAGTTAC 60.356 54.545 0.00 0.00 0.00 2.50
110 111 2.572104 GAGTTGACATGGGGGAGTTACT 59.428 50.000 0.00 0.00 0.00 2.24
111 112 2.305927 AGTTGACATGGGGGAGTTACTG 59.694 50.000 0.00 0.00 0.00 2.74
112 113 1.285280 TGACATGGGGGAGTTACTGG 58.715 55.000 0.00 0.00 0.00 4.00
113 114 0.546598 GACATGGGGGAGTTACTGGG 59.453 60.000 0.00 0.00 0.00 4.45
114 115 0.919289 ACATGGGGGAGTTACTGGGG 60.919 60.000 0.00 0.00 0.00 4.96
115 116 0.919289 CATGGGGGAGTTACTGGGGT 60.919 60.000 0.00 0.00 0.00 4.95
116 117 0.178813 ATGGGGGAGTTACTGGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
117 118 1.137594 TGGGGGAGTTACTGGGGTTG 61.138 60.000 0.00 0.00 0.00 3.77
118 119 1.689412 GGGGAGTTACTGGGGTTGG 59.311 63.158 0.00 0.00 0.00 3.77
119 120 1.689412 GGGAGTTACTGGGGTTGGG 59.311 63.158 0.00 0.00 0.00 4.12
120 121 1.689412 GGAGTTACTGGGGTTGGGG 59.311 63.158 0.00 0.00 0.00 4.96
121 122 1.689412 GAGTTACTGGGGTTGGGGG 59.311 63.158 0.00 0.00 0.00 5.40
122 123 0.843343 GAGTTACTGGGGTTGGGGGA 60.843 60.000 0.00 0.00 0.00 4.81
123 124 1.138228 AGTTACTGGGGTTGGGGGAC 61.138 60.000 0.00 0.00 0.00 4.46
124 125 2.225596 TTACTGGGGTTGGGGGACG 61.226 63.158 0.00 0.00 0.00 4.79
146 147 4.904261 GGCCGGGGTGGGGGTATA 62.904 72.222 2.18 0.00 38.63 1.47
147 148 2.773485 GCCGGGGTGGGGGTATAA 60.773 66.667 2.18 0.00 38.63 0.98
148 149 2.385266 GCCGGGGTGGGGGTATAAA 61.385 63.158 2.18 0.00 38.63 1.40
149 150 1.935612 GCCGGGGTGGGGGTATAAAA 61.936 60.000 2.18 0.00 38.63 1.52
150 151 0.630134 CCGGGGTGGGGGTATAAAAA 59.370 55.000 0.00 0.00 0.00 1.94
151 152 1.218450 CCGGGGTGGGGGTATAAAAAT 59.782 52.381 0.00 0.00 0.00 1.82
152 153 2.312390 CGGGGTGGGGGTATAAAAATG 58.688 52.381 0.00 0.00 0.00 2.32
153 154 2.684943 GGGGTGGGGGTATAAAAATGG 58.315 52.381 0.00 0.00 0.00 3.16
154 155 2.043992 GGGTGGGGGTATAAAAATGGC 58.956 52.381 0.00 0.00 0.00 4.40
155 156 1.684450 GGTGGGGGTATAAAAATGGCG 59.316 52.381 0.00 0.00 0.00 5.69
156 157 1.684450 GTGGGGGTATAAAAATGGCGG 59.316 52.381 0.00 0.00 0.00 6.13
157 158 0.677288 GGGGGTATAAAAATGGCGGC 59.323 55.000 0.00 0.00 0.00 6.53
158 159 1.699730 GGGGTATAAAAATGGCGGCT 58.300 50.000 11.43 0.00 0.00 5.52
159 160 2.489437 GGGGGTATAAAAATGGCGGCTA 60.489 50.000 11.43 0.00 0.00 3.93
160 161 3.224269 GGGGTATAAAAATGGCGGCTAA 58.776 45.455 11.43 0.00 0.00 3.09
161 162 3.254903 GGGGTATAAAAATGGCGGCTAAG 59.745 47.826 11.43 0.00 0.00 2.18
162 163 3.254903 GGGTATAAAAATGGCGGCTAAGG 59.745 47.826 11.43 0.00 0.00 2.69
163 164 3.254903 GGTATAAAAATGGCGGCTAAGGG 59.745 47.826 11.43 0.00 0.00 3.95
164 165 2.517998 TAAAAATGGCGGCTAAGGGT 57.482 45.000 11.43 0.00 0.00 4.34
165 166 1.639722 AAAAATGGCGGCTAAGGGTT 58.360 45.000 11.43 0.00 0.00 4.11
166 167 1.639722 AAAATGGCGGCTAAGGGTTT 58.360 45.000 11.43 0.00 0.00 3.27
167 168 0.894835 AAATGGCGGCTAAGGGTTTG 59.105 50.000 11.43 0.00 0.00 2.93
168 169 0.039035 AATGGCGGCTAAGGGTTTGA 59.961 50.000 11.43 0.00 0.00 2.69
169 170 0.039035 ATGGCGGCTAAGGGTTTGAA 59.961 50.000 11.43 0.00 0.00 2.69
170 171 0.178987 TGGCGGCTAAGGGTTTGAAA 60.179 50.000 11.43 0.00 0.00 2.69
171 172 0.526211 GGCGGCTAAGGGTTTGAAAG 59.474 55.000 0.00 0.00 0.00 2.62
172 173 1.244816 GCGGCTAAGGGTTTGAAAGT 58.755 50.000 0.00 0.00 0.00 2.66
173 174 1.199327 GCGGCTAAGGGTTTGAAAGTC 59.801 52.381 0.00 0.00 0.00 3.01
174 175 1.810755 CGGCTAAGGGTTTGAAAGTCC 59.189 52.381 0.00 0.00 0.00 3.85
175 176 2.812613 CGGCTAAGGGTTTGAAAGTCCA 60.813 50.000 1.06 0.00 0.00 4.02
176 177 3.227614 GGCTAAGGGTTTGAAAGTCCAA 58.772 45.455 1.06 0.00 0.00 3.53
177 178 3.005472 GGCTAAGGGTTTGAAAGTCCAAC 59.995 47.826 1.06 0.00 0.00 3.77
178 179 3.005472 GCTAAGGGTTTGAAAGTCCAACC 59.995 47.826 3.25 3.25 0.00 3.77
179 180 1.687563 AGGGTTTGAAAGTCCAACCG 58.312 50.000 5.45 0.00 0.00 4.44
180 181 0.671796 GGGTTTGAAAGTCCAACCGG 59.328 55.000 0.00 0.00 0.00 5.28
181 182 1.395635 GGTTTGAAAGTCCAACCGGT 58.604 50.000 0.00 0.00 0.00 5.28
182 183 2.574450 GGTTTGAAAGTCCAACCGGTA 58.426 47.619 8.00 0.00 0.00 4.02
183 184 2.291465 GGTTTGAAAGTCCAACCGGTAC 59.709 50.000 8.00 1.66 0.00 3.34
203 204 2.388310 GAAGGTTCGAGGAAGGAAGG 57.612 55.000 0.00 0.00 0.00 3.46
204 205 0.984995 AAGGTTCGAGGAAGGAAGGG 59.015 55.000 0.00 0.00 0.00 3.95
205 206 0.178900 AGGTTCGAGGAAGGAAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
206 207 0.036294 GGTTCGAGGAAGGAAGGGTG 60.036 60.000 0.00 0.00 0.00 4.61
207 208 0.685660 GTTCGAGGAAGGAAGGGTGT 59.314 55.000 0.00 0.00 0.00 4.16
208 209 0.685097 TTCGAGGAAGGAAGGGTGTG 59.315 55.000 0.00 0.00 0.00 3.82
209 210 1.192146 TCGAGGAAGGAAGGGTGTGG 61.192 60.000 0.00 0.00 0.00 4.17
210 211 1.002011 GAGGAAGGAAGGGTGTGGC 60.002 63.158 0.00 0.00 0.00 5.01
211 212 2.035783 GGAAGGAAGGGTGTGGCC 59.964 66.667 0.00 0.00 0.00 5.36
231 232 1.008309 GGCACGGAGACTAGATCGC 60.008 63.158 0.00 0.00 0.00 4.58
232 233 1.369448 GCACGGAGACTAGATCGCG 60.369 63.158 0.00 0.00 0.00 5.87
233 234 1.773054 GCACGGAGACTAGATCGCGA 61.773 60.000 13.09 13.09 0.00 5.87
234 235 0.042013 CACGGAGACTAGATCGCGAC 60.042 60.000 12.93 5.67 0.00 5.19
235 236 1.159098 ACGGAGACTAGATCGCGACC 61.159 60.000 12.93 0.00 0.00 4.79
236 237 1.570475 GGAGACTAGATCGCGACCG 59.430 63.158 12.93 2.17 0.00 4.79
237 238 1.159098 GGAGACTAGATCGCGACCGT 61.159 60.000 12.93 5.98 35.54 4.83
238 239 0.042013 GAGACTAGATCGCGACCGTG 60.042 60.000 12.93 1.83 35.54 4.94
239 240 1.009900 GACTAGATCGCGACCGTGG 60.010 63.158 12.93 3.14 35.54 4.94
240 241 2.353607 CTAGATCGCGACCGTGGC 60.354 66.667 12.93 0.00 35.54 5.01
241 242 2.827190 TAGATCGCGACCGTGGCT 60.827 61.111 12.93 4.81 35.54 4.75
242 243 2.990674 CTAGATCGCGACCGTGGCTG 62.991 65.000 12.93 0.00 35.54 4.85
243 244 4.492160 GATCGCGACCGTGGCTGA 62.492 66.667 12.93 3.65 35.54 4.26
244 245 4.498520 ATCGCGACCGTGGCTGAG 62.499 66.667 12.93 0.00 35.54 3.35
253 254 4.803426 GTGGCTGAGGCGACCGAG 62.803 72.222 0.35 0.00 40.51 4.63
257 258 3.522731 CTGAGGCGACCGAGGGAG 61.523 72.222 0.00 0.00 0.00 4.30
259 260 4.816984 GAGGCGACCGAGGGAGGA 62.817 72.222 0.00 0.00 34.73 3.71
260 261 4.824515 AGGCGACCGAGGGAGGAG 62.825 72.222 0.00 0.00 34.73 3.69
261 262 4.816984 GGCGACCGAGGGAGGAGA 62.817 72.222 0.00 0.00 34.73 3.71
262 263 3.519930 GCGACCGAGGGAGGAGAC 61.520 72.222 0.00 0.00 34.73 3.36
263 264 3.203412 CGACCGAGGGAGGAGACG 61.203 72.222 0.00 0.00 34.73 4.18
264 265 2.271497 GACCGAGGGAGGAGACGA 59.729 66.667 0.00 0.00 34.73 4.20
265 266 2.045143 ACCGAGGGAGGAGACGAC 60.045 66.667 0.00 0.00 34.73 4.34
266 267 2.045242 CCGAGGGAGGAGACGACA 60.045 66.667 0.00 0.00 0.00 4.35
267 268 1.454111 CCGAGGGAGGAGACGACAT 60.454 63.158 0.00 0.00 0.00 3.06
268 269 0.179026 CCGAGGGAGGAGACGACATA 60.179 60.000 0.00 0.00 0.00 2.29
269 270 0.945813 CGAGGGAGGAGACGACATAC 59.054 60.000 0.00 0.00 0.00 2.39
270 271 1.320507 GAGGGAGGAGACGACATACC 58.679 60.000 0.00 0.00 0.00 2.73
271 272 0.629596 AGGGAGGAGACGACATACCA 59.370 55.000 0.00 0.00 0.00 3.25
272 273 1.033574 GGGAGGAGACGACATACCAG 58.966 60.000 0.00 0.00 0.00 4.00
273 274 1.409802 GGGAGGAGACGACATACCAGA 60.410 57.143 0.00 0.00 0.00 3.86
274 275 1.677052 GGAGGAGACGACATACCAGAC 59.323 57.143 0.00 0.00 0.00 3.51
275 276 1.677052 GAGGAGACGACATACCAGACC 59.323 57.143 0.00 0.00 0.00 3.85
276 277 1.005569 AGGAGACGACATACCAGACCA 59.994 52.381 0.00 0.00 0.00 4.02
277 278 1.134560 GGAGACGACATACCAGACCAC 59.865 57.143 0.00 0.00 0.00 4.16
278 279 2.093106 GAGACGACATACCAGACCACT 58.907 52.381 0.00 0.00 0.00 4.00
279 280 2.093106 AGACGACATACCAGACCACTC 58.907 52.381 0.00 0.00 0.00 3.51
280 281 2.093106 GACGACATACCAGACCACTCT 58.907 52.381 0.00 0.00 0.00 3.24
281 282 2.093106 ACGACATACCAGACCACTCTC 58.907 52.381 0.00 0.00 0.00 3.20
282 283 1.064208 CGACATACCAGACCACTCTCG 59.936 57.143 0.00 0.00 0.00 4.04
283 284 2.093106 GACATACCAGACCACTCTCGT 58.907 52.381 0.00 0.00 0.00 4.18
284 285 2.093106 ACATACCAGACCACTCTCGTC 58.907 52.381 0.00 0.00 0.00 4.20
285 286 2.291024 ACATACCAGACCACTCTCGTCT 60.291 50.000 0.00 0.00 41.29 4.18
286 287 2.110901 TACCAGACCACTCTCGTCTC 57.889 55.000 0.00 0.00 38.54 3.36
287 288 0.402504 ACCAGACCACTCTCGTCTCT 59.597 55.000 0.00 0.00 38.54 3.10
288 289 1.091537 CCAGACCACTCTCGTCTCTC 58.908 60.000 0.00 0.00 38.54 3.20
289 290 1.091537 CAGACCACTCTCGTCTCTCC 58.908 60.000 0.00 0.00 38.54 3.71
290 291 0.034863 AGACCACTCTCGTCTCTCCC 60.035 60.000 0.00 0.00 35.68 4.30
291 292 0.322636 GACCACTCTCGTCTCTCCCA 60.323 60.000 0.00 0.00 0.00 4.37
292 293 0.609681 ACCACTCTCGTCTCTCCCAC 60.610 60.000 0.00 0.00 0.00 4.61
293 294 0.609406 CCACTCTCGTCTCTCCCACA 60.609 60.000 0.00 0.00 0.00 4.17
294 295 1.248486 CACTCTCGTCTCTCCCACAA 58.752 55.000 0.00 0.00 0.00 3.33
295 296 1.613925 CACTCTCGTCTCTCCCACAAA 59.386 52.381 0.00 0.00 0.00 2.83
296 297 1.889829 ACTCTCGTCTCTCCCACAAAG 59.110 52.381 0.00 0.00 0.00 2.77
297 298 1.889829 CTCTCGTCTCTCCCACAAAGT 59.110 52.381 0.00 0.00 0.00 2.66
298 299 1.613925 TCTCGTCTCTCCCACAAAGTG 59.386 52.381 0.00 0.00 0.00 3.16
299 300 1.613925 CTCGTCTCTCCCACAAAGTGA 59.386 52.381 0.00 0.00 35.23 3.41
300 301 1.340248 TCGTCTCTCCCACAAAGTGAC 59.660 52.381 0.00 0.00 35.23 3.67
301 302 1.068588 CGTCTCTCCCACAAAGTGACA 59.931 52.381 0.00 0.00 37.19 3.58
302 303 2.483013 CGTCTCTCCCACAAAGTGACAA 60.483 50.000 0.00 0.00 37.19 3.18
303 304 3.134458 GTCTCTCCCACAAAGTGACAAG 58.866 50.000 0.00 0.00 37.27 3.16
314 315 0.107897 AGTGACAAGTCGCAACACCA 60.108 50.000 15.30 0.00 42.23 4.17
398 399 1.002069 TCAAATGCTCCTGGGTGGAT 58.998 50.000 0.00 0.00 45.16 3.41
518 520 2.307496 AATCACATTGGTGGAAGGCA 57.693 45.000 0.00 0.00 45.32 4.75
564 566 7.551585 TGCTCTGAAAATTTTACTTCCAAACA 58.448 30.769 2.75 0.00 0.00 2.83
638 645 2.228138 AAACTTGGCATGCACAACAG 57.772 45.000 21.36 12.16 0.00 3.16
730 774 1.364626 GGCACTTCATCGAGCACCAG 61.365 60.000 0.00 0.00 0.00 4.00
810 3607 0.710588 TTACCTGAGGAGGAGGCAGA 59.289 55.000 4.99 0.00 42.93 4.26
858 3655 2.303311 AGAGAGTTTGCCAGGTACTTCC 59.697 50.000 0.00 0.00 34.60 3.46
859 3656 1.002087 AGAGTTTGCCAGGTACTTCCG 59.998 52.381 0.00 0.00 41.99 4.30
860 3657 0.763035 AGTTTGCCAGGTACTTCCGT 59.237 50.000 0.00 0.00 41.99 4.69
862 3659 1.053424 TTTGCCAGGTACTTCCGTCT 58.947 50.000 0.00 0.00 41.99 4.18
864 3661 1.927487 TGCCAGGTACTTCCGTCTTA 58.073 50.000 0.00 0.00 41.99 2.10
883 3683 8.840321 CCGTCTTATTTCTCAAATGGATGTATT 58.160 33.333 0.00 0.00 32.38 1.89
884 3684 9.869844 CGTCTTATTTCTCAAATGGATGTATTC 57.130 33.333 0.00 0.00 32.38 1.75
961 4525 2.005451 CTTGAGTCCGAAATGCAGAGG 58.995 52.381 0.00 0.00 0.00 3.69
1026 4590 1.971505 TATCTCCCGCTGGGTGCAAG 61.972 60.000 12.46 4.19 44.74 4.01
1046 4610 2.250190 GTGGCGCACGTTGGTTAC 59.750 61.111 10.83 0.00 0.00 2.50
1047 4611 2.973600 TGGCGCACGTTGGTTACC 60.974 61.111 10.83 0.00 0.00 2.85
1048 4612 2.973600 GGCGCACGTTGGTTACCA 60.974 61.111 10.83 0.00 0.00 3.25
1049 4613 2.329614 GGCGCACGTTGGTTACCAT 61.330 57.895 10.83 0.00 31.53 3.55
1050 4614 1.577421 GCGCACGTTGGTTACCATT 59.423 52.632 4.38 0.00 31.53 3.16
1051 4615 0.453782 GCGCACGTTGGTTACCATTC 60.454 55.000 4.38 0.84 31.53 2.67
1052 4616 0.167251 CGCACGTTGGTTACCATTCC 59.833 55.000 4.38 0.00 31.53 3.01
1053 4617 1.240256 GCACGTTGGTTACCATTCCA 58.760 50.000 4.38 0.00 31.53 3.53
1054 4618 1.199097 GCACGTTGGTTACCATTCCAG 59.801 52.381 4.38 0.00 35.05 3.86
1055 4619 2.773487 CACGTTGGTTACCATTCCAGA 58.227 47.619 4.38 0.00 35.05 3.86
1371 4963 4.610945 AGTTGTGAAAGAGCCAAATTTCG 58.389 39.130 0.00 0.00 38.08 3.46
1697 5289 7.236640 ACCTTCTAATTCCTCTCATAATCTCCC 59.763 40.741 0.00 0.00 0.00 4.30
1747 5345 8.027771 AGCAACACAATACTTCAGTAGTAGTAC 58.972 37.037 0.00 0.00 42.44 2.73
2033 5738 1.070758 TGAGCTCAAGGAGTTCACCAC 59.929 52.381 15.67 0.00 43.06 4.16
2113 5818 4.634012 AGACACAAGGCATTAGGTAACA 57.366 40.909 0.00 0.00 41.41 2.41
2201 5906 5.726138 GCTTATCGCTGAAGAATTGAGTGTG 60.726 44.000 0.00 0.00 40.76 3.82
2209 5914 4.040339 TGAAGAATTGAGTGTGGTAGCAGA 59.960 41.667 0.00 0.00 0.00 4.26
2291 5996 2.771089 CTGTCATGCACTACAGTGGTT 58.229 47.619 18.01 0.00 45.72 3.67
2328 6033 9.468532 GCTCTTTTAGTTTTCATTTGATTGTCT 57.531 29.630 0.00 0.00 0.00 3.41
2383 6088 4.819630 TGGACAAATTTACTGACACCTCAC 59.180 41.667 0.00 0.00 0.00 3.51
2385 6090 5.049405 GGACAAATTTACTGACACCTCACTG 60.049 44.000 0.00 0.00 0.00 3.66
2404 6109 2.890311 CTGCCTTTGTTTCACCATGGTA 59.110 45.455 19.28 0.00 0.00 3.25
2614 6319 7.663905 CCCCGAAGTATTATTATCACCATCAAA 59.336 37.037 0.00 0.00 0.00 2.69
2658 6363 1.999648 TTCTTGCCTTCCATTGTGCT 58.000 45.000 0.00 0.00 0.00 4.40
2818 6523 0.039346 TGCACACGCACATGATTTGG 60.039 50.000 0.00 0.00 45.36 3.28
2852 6558 8.453238 TTTATTACCAAGTGCAGTTCAAACTA 57.547 30.769 3.08 0.00 37.08 2.24
2866 6572 7.851963 GCAGTTCAAACTACGTGTATTTTGTTA 59.148 33.333 17.13 8.46 37.15 2.41
2867 6573 9.705471 CAGTTCAAACTACGTGTATTTTGTTAA 57.295 29.630 17.13 7.40 37.15 2.01
2954 6660 5.386958 TGCATCTCATACCGATACCTAAC 57.613 43.478 0.00 0.00 0.00 2.34
2987 6693 4.024438 CGTACAGTACATAGAACCGAACG 58.976 47.826 11.37 0.00 0.00 3.95
2999 6705 5.263968 AGAACCGAACGATCTATGAACAT 57.736 39.130 0.00 0.00 0.00 2.71
3110 6822 1.302285 CCTCAGCATCAGCCAAGGT 59.698 57.895 0.00 0.00 43.56 3.50
3153 6865 2.107366 TCAGCCATGGAGTCGATGTAA 58.893 47.619 18.40 0.00 0.00 2.41
3174 6886 3.176924 AGGAAGTAGTGGAAGCAGAGA 57.823 47.619 0.00 0.00 0.00 3.10
3258 6970 1.306997 TTCTCCCGGGCAGGATCTT 60.307 57.895 18.49 0.00 45.00 2.40
3298 7010 1.841556 ACCTGCTCTCCCGACCAAA 60.842 57.895 0.00 0.00 0.00 3.28
3315 7027 4.656117 ACGTGCACGCGGTCATCA 62.656 61.111 37.35 0.00 44.43 3.07
3362 7074 4.460731 CAGTGAGAGGAACAGTAGATGACA 59.539 45.833 0.00 0.00 0.00 3.58
3375 7087 5.303078 CAGTAGATGACAGCTAGGGTTGTAT 59.697 44.000 0.00 0.00 37.03 2.29
3501 7213 2.676163 GAACAGCCCACGGTCCAACT 62.676 60.000 0.00 0.00 0.00 3.16
3597 7310 4.540153 GCTTCGGCTTGGCTCATA 57.460 55.556 0.00 0.00 38.08 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.179073 CCTCGAGGTTACCAGCCATG 60.179 60.000 24.04 0.00 0.00 3.66
15 16 2.212327 CCTCGAGGTTACCAGCCAT 58.788 57.895 24.04 0.00 0.00 4.40
16 17 3.708210 CCTCGAGGTTACCAGCCA 58.292 61.111 24.04 0.00 0.00 4.75
26 27 2.811317 GCACGCTTCACCTCGAGG 60.811 66.667 30.11 30.11 42.17 4.63
27 28 3.175240 CGCACGCTTCACCTCGAG 61.175 66.667 5.13 5.13 0.00 4.04
28 29 3.202216 TTCGCACGCTTCACCTCGA 62.202 57.895 0.00 0.00 0.00 4.04
29 30 2.720758 CTTCGCACGCTTCACCTCG 61.721 63.158 0.00 0.00 0.00 4.63
30 31 1.664965 ACTTCGCACGCTTCACCTC 60.665 57.895 0.00 0.00 0.00 3.85
31 32 1.956170 CACTTCGCACGCTTCACCT 60.956 57.895 0.00 0.00 0.00 4.00
32 33 2.551270 CACTTCGCACGCTTCACC 59.449 61.111 0.00 0.00 0.00 4.02
33 34 2.127609 GCACTTCGCACGCTTCAC 60.128 61.111 0.00 0.00 41.79 3.18
34 35 3.701530 CGCACTTCGCACGCTTCA 61.702 61.111 0.00 0.00 42.60 3.02
35 36 3.403057 TCGCACTTCGCACGCTTC 61.403 61.111 0.00 0.00 42.60 3.86
36 37 3.702555 GTCGCACTTCGCACGCTT 61.703 61.111 0.00 0.00 42.60 4.68
39 40 3.816920 CTCGTCGCACTTCGCACG 61.817 66.667 0.00 0.00 42.60 5.34
40 41 3.470567 CCTCGTCGCACTTCGCAC 61.471 66.667 0.00 0.00 42.60 5.34
41 42 3.973516 ACCTCGTCGCACTTCGCA 61.974 61.111 0.00 0.00 42.60 5.10
42 43 3.470567 CACCTCGTCGCACTTCGC 61.471 66.667 0.00 0.00 38.27 4.70
43 44 2.805353 CCACCTCGTCGCACTTCG 60.805 66.667 0.00 0.00 40.15 3.79
44 45 1.444553 CTCCACCTCGTCGCACTTC 60.445 63.158 0.00 0.00 0.00 3.01
45 46 2.651361 CTCCACCTCGTCGCACTT 59.349 61.111 0.00 0.00 0.00 3.16
46 47 4.057428 GCTCCACCTCGTCGCACT 62.057 66.667 0.00 0.00 0.00 4.40
47 48 2.005960 ATAGCTCCACCTCGTCGCAC 62.006 60.000 0.00 0.00 0.00 5.34
48 49 1.753078 ATAGCTCCACCTCGTCGCA 60.753 57.895 0.00 0.00 0.00 5.10
49 50 1.299468 CATAGCTCCACCTCGTCGC 60.299 63.158 0.00 0.00 0.00 5.19
50 51 1.101635 TCCATAGCTCCACCTCGTCG 61.102 60.000 0.00 0.00 0.00 5.12
51 52 1.333177 ATCCATAGCTCCACCTCGTC 58.667 55.000 0.00 0.00 0.00 4.20
52 53 1.414181 CAATCCATAGCTCCACCTCGT 59.586 52.381 0.00 0.00 0.00 4.18
53 54 1.688735 TCAATCCATAGCTCCACCTCG 59.311 52.381 0.00 0.00 0.00 4.63
54 55 2.703007 AGTCAATCCATAGCTCCACCTC 59.297 50.000 0.00 0.00 0.00 3.85
55 56 2.769209 AGTCAATCCATAGCTCCACCT 58.231 47.619 0.00 0.00 0.00 4.00
56 57 3.643792 ACTAGTCAATCCATAGCTCCACC 59.356 47.826 0.00 0.00 0.00 4.61
57 58 4.946478 ACTAGTCAATCCATAGCTCCAC 57.054 45.455 0.00 0.00 0.00 4.02
58 59 4.443457 GCAACTAGTCAATCCATAGCTCCA 60.443 45.833 0.00 0.00 0.00 3.86
59 60 4.061596 GCAACTAGTCAATCCATAGCTCC 58.938 47.826 0.00 0.00 0.00 4.70
60 61 4.697514 TGCAACTAGTCAATCCATAGCTC 58.302 43.478 0.00 0.00 0.00 4.09
61 62 4.444022 CCTGCAACTAGTCAATCCATAGCT 60.444 45.833 0.00 0.00 0.00 3.32
62 63 3.812053 CCTGCAACTAGTCAATCCATAGC 59.188 47.826 0.00 0.00 0.00 2.97
63 64 4.101585 TCCCTGCAACTAGTCAATCCATAG 59.898 45.833 0.00 0.00 0.00 2.23
64 65 4.037222 TCCCTGCAACTAGTCAATCCATA 58.963 43.478 0.00 0.00 0.00 2.74
65 66 2.846206 TCCCTGCAACTAGTCAATCCAT 59.154 45.455 0.00 0.00 0.00 3.41
66 67 2.265367 TCCCTGCAACTAGTCAATCCA 58.735 47.619 0.00 0.00 0.00 3.41
67 68 3.209410 CATCCCTGCAACTAGTCAATCC 58.791 50.000 0.00 0.00 0.00 3.01
68 69 3.118261 TCCATCCCTGCAACTAGTCAATC 60.118 47.826 0.00 0.00 0.00 2.67
69 70 2.846206 TCCATCCCTGCAACTAGTCAAT 59.154 45.455 0.00 0.00 0.00 2.57
70 71 2.237143 CTCCATCCCTGCAACTAGTCAA 59.763 50.000 0.00 0.00 0.00 3.18
71 72 1.833630 CTCCATCCCTGCAACTAGTCA 59.166 52.381 0.00 0.00 0.00 3.41
72 73 1.834263 ACTCCATCCCTGCAACTAGTC 59.166 52.381 0.00 0.00 0.00 2.59
73 74 1.958288 ACTCCATCCCTGCAACTAGT 58.042 50.000 0.00 0.00 0.00 2.57
74 75 2.237143 TCAACTCCATCCCTGCAACTAG 59.763 50.000 0.00 0.00 0.00 2.57
75 76 2.027192 GTCAACTCCATCCCTGCAACTA 60.027 50.000 0.00 0.00 0.00 2.24
76 77 1.067295 TCAACTCCATCCCTGCAACT 58.933 50.000 0.00 0.00 0.00 3.16
77 78 1.168714 GTCAACTCCATCCCTGCAAC 58.831 55.000 0.00 0.00 0.00 4.17
78 79 0.770499 TGTCAACTCCATCCCTGCAA 59.230 50.000 0.00 0.00 0.00 4.08
79 80 0.994247 ATGTCAACTCCATCCCTGCA 59.006 50.000 0.00 0.00 0.00 4.41
80 81 1.386533 CATGTCAACTCCATCCCTGC 58.613 55.000 0.00 0.00 0.00 4.85
81 82 1.409241 CCCATGTCAACTCCATCCCTG 60.409 57.143 0.00 0.00 0.00 4.45
82 83 0.921896 CCCATGTCAACTCCATCCCT 59.078 55.000 0.00 0.00 0.00 4.20
83 84 0.106519 CCCCATGTCAACTCCATCCC 60.107 60.000 0.00 0.00 0.00 3.85
84 85 0.106519 CCCCCATGTCAACTCCATCC 60.107 60.000 0.00 0.00 0.00 3.51
85 86 0.918983 TCCCCCATGTCAACTCCATC 59.081 55.000 0.00 0.00 0.00 3.51
86 87 0.921896 CTCCCCCATGTCAACTCCAT 59.078 55.000 0.00 0.00 0.00 3.41
87 88 0.475632 ACTCCCCCATGTCAACTCCA 60.476 55.000 0.00 0.00 0.00 3.86
88 89 0.698818 AACTCCCCCATGTCAACTCC 59.301 55.000 0.00 0.00 0.00 3.85
89 90 2.572104 AGTAACTCCCCCATGTCAACTC 59.428 50.000 0.00 0.00 0.00 3.01
90 91 2.305927 CAGTAACTCCCCCATGTCAACT 59.694 50.000 0.00 0.00 0.00 3.16
91 92 2.618045 CCAGTAACTCCCCCATGTCAAC 60.618 54.545 0.00 0.00 0.00 3.18
92 93 1.633432 CCAGTAACTCCCCCATGTCAA 59.367 52.381 0.00 0.00 0.00 3.18
93 94 1.285280 CCAGTAACTCCCCCATGTCA 58.715 55.000 0.00 0.00 0.00 3.58
94 95 0.546598 CCCAGTAACTCCCCCATGTC 59.453 60.000 0.00 0.00 0.00 3.06
95 96 0.919289 CCCCAGTAACTCCCCCATGT 60.919 60.000 0.00 0.00 0.00 3.21
96 97 0.919289 ACCCCAGTAACTCCCCCATG 60.919 60.000 0.00 0.00 0.00 3.66
97 98 0.178813 AACCCCAGTAACTCCCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
98 99 1.137594 CAACCCCAGTAACTCCCCCA 61.138 60.000 0.00 0.00 0.00 4.96
99 100 1.689412 CAACCCCAGTAACTCCCCC 59.311 63.158 0.00 0.00 0.00 5.40
100 101 1.689412 CCAACCCCAGTAACTCCCC 59.311 63.158 0.00 0.00 0.00 4.81
101 102 1.689412 CCCAACCCCAGTAACTCCC 59.311 63.158 0.00 0.00 0.00 4.30
102 103 1.689412 CCCCAACCCCAGTAACTCC 59.311 63.158 0.00 0.00 0.00 3.85
103 104 0.843343 TCCCCCAACCCCAGTAACTC 60.843 60.000 0.00 0.00 0.00 3.01
104 105 1.138228 GTCCCCCAACCCCAGTAACT 61.138 60.000 0.00 0.00 0.00 2.24
105 106 1.381463 GTCCCCCAACCCCAGTAAC 59.619 63.158 0.00 0.00 0.00 2.50
106 107 2.225596 CGTCCCCCAACCCCAGTAA 61.226 63.158 0.00 0.00 0.00 2.24
107 108 2.608368 CGTCCCCCAACCCCAGTA 60.608 66.667 0.00 0.00 0.00 2.74
129 130 4.904261 TATACCCCCACCCCGGCC 62.904 72.222 0.00 0.00 0.00 6.13
130 131 1.935612 TTTTATACCCCCACCCCGGC 61.936 60.000 0.00 0.00 0.00 6.13
131 132 0.630134 TTTTTATACCCCCACCCCGG 59.370 55.000 0.00 0.00 0.00 5.73
132 133 2.312390 CATTTTTATACCCCCACCCCG 58.688 52.381 0.00 0.00 0.00 5.73
133 134 2.684943 CCATTTTTATACCCCCACCCC 58.315 52.381 0.00 0.00 0.00 4.95
134 135 2.043992 GCCATTTTTATACCCCCACCC 58.956 52.381 0.00 0.00 0.00 4.61
135 136 1.684450 CGCCATTTTTATACCCCCACC 59.316 52.381 0.00 0.00 0.00 4.61
136 137 1.684450 CCGCCATTTTTATACCCCCAC 59.316 52.381 0.00 0.00 0.00 4.61
137 138 2.030045 GCCGCCATTTTTATACCCCCA 61.030 52.381 0.00 0.00 0.00 4.96
138 139 0.677288 GCCGCCATTTTTATACCCCC 59.323 55.000 0.00 0.00 0.00 5.40
139 140 1.699730 AGCCGCCATTTTTATACCCC 58.300 50.000 0.00 0.00 0.00 4.95
140 141 3.254903 CCTTAGCCGCCATTTTTATACCC 59.745 47.826 0.00 0.00 0.00 3.69
141 142 3.254903 CCCTTAGCCGCCATTTTTATACC 59.745 47.826 0.00 0.00 0.00 2.73
142 143 3.887110 ACCCTTAGCCGCCATTTTTATAC 59.113 43.478 0.00 0.00 0.00 1.47
143 144 4.173290 ACCCTTAGCCGCCATTTTTATA 57.827 40.909 0.00 0.00 0.00 0.98
144 145 3.026707 ACCCTTAGCCGCCATTTTTAT 57.973 42.857 0.00 0.00 0.00 1.40
145 146 2.517998 ACCCTTAGCCGCCATTTTTA 57.482 45.000 0.00 0.00 0.00 1.52
146 147 1.639722 AACCCTTAGCCGCCATTTTT 58.360 45.000 0.00 0.00 0.00 1.94
147 148 1.275010 CAAACCCTTAGCCGCCATTTT 59.725 47.619 0.00 0.00 0.00 1.82
148 149 0.894835 CAAACCCTTAGCCGCCATTT 59.105 50.000 0.00 0.00 0.00 2.32
149 150 0.039035 TCAAACCCTTAGCCGCCATT 59.961 50.000 0.00 0.00 0.00 3.16
150 151 0.039035 TTCAAACCCTTAGCCGCCAT 59.961 50.000 0.00 0.00 0.00 4.40
151 152 0.178987 TTTCAAACCCTTAGCCGCCA 60.179 50.000 0.00 0.00 0.00 5.69
152 153 0.526211 CTTTCAAACCCTTAGCCGCC 59.474 55.000 0.00 0.00 0.00 6.13
153 154 1.199327 GACTTTCAAACCCTTAGCCGC 59.801 52.381 0.00 0.00 0.00 6.53
154 155 1.810755 GGACTTTCAAACCCTTAGCCG 59.189 52.381 0.00 0.00 0.00 5.52
155 156 2.871453 TGGACTTTCAAACCCTTAGCC 58.129 47.619 0.00 0.00 0.00 3.93
156 157 3.005472 GGTTGGACTTTCAAACCCTTAGC 59.995 47.826 1.40 0.00 0.00 3.09
157 158 3.252458 CGGTTGGACTTTCAAACCCTTAG 59.748 47.826 6.86 0.00 31.03 2.18
158 159 3.215975 CGGTTGGACTTTCAAACCCTTA 58.784 45.455 6.86 0.00 31.03 2.69
159 160 2.028876 CGGTTGGACTTTCAAACCCTT 58.971 47.619 6.86 0.00 31.03 3.95
160 161 1.687563 CGGTTGGACTTTCAAACCCT 58.312 50.000 6.86 0.00 31.03 4.34
161 162 0.671796 CCGGTTGGACTTTCAAACCC 59.328 55.000 6.86 0.00 37.49 4.11
162 163 1.395635 ACCGGTTGGACTTTCAAACC 58.604 50.000 0.00 2.70 39.21 3.27
163 164 2.032636 CGTACCGGTTGGACTTTCAAAC 60.033 50.000 15.04 0.00 39.21 2.93
164 165 2.158986 TCGTACCGGTTGGACTTTCAAA 60.159 45.455 15.04 0.00 39.21 2.69
165 166 1.411977 TCGTACCGGTTGGACTTTCAA 59.588 47.619 15.04 0.00 39.21 2.69
166 167 1.039068 TCGTACCGGTTGGACTTTCA 58.961 50.000 15.04 0.00 39.21 2.69
167 168 2.064014 CTTCGTACCGGTTGGACTTTC 58.936 52.381 15.04 0.00 39.21 2.62
168 169 1.270465 CCTTCGTACCGGTTGGACTTT 60.270 52.381 15.04 0.00 39.21 2.66
169 170 0.319405 CCTTCGTACCGGTTGGACTT 59.681 55.000 15.04 0.00 39.21 3.01
170 171 0.829182 ACCTTCGTACCGGTTGGACT 60.829 55.000 15.04 0.00 39.21 3.85
171 172 0.033920 AACCTTCGTACCGGTTGGAC 59.966 55.000 15.04 3.60 41.71 4.02
172 173 0.318120 GAACCTTCGTACCGGTTGGA 59.682 55.000 15.04 7.96 43.23 3.53
173 174 1.010419 CGAACCTTCGTACCGGTTGG 61.010 60.000 15.04 10.47 43.23 3.77
174 175 2.437850 CGAACCTTCGTACCGGTTG 58.562 57.895 15.04 6.24 43.23 3.77
175 176 4.972591 CGAACCTTCGTACCGGTT 57.027 55.556 15.04 8.21 45.71 4.44
184 185 1.066071 CCCTTCCTTCCTCGAACCTTC 60.066 57.143 0.00 0.00 0.00 3.46
185 186 0.984995 CCCTTCCTTCCTCGAACCTT 59.015 55.000 0.00 0.00 0.00 3.50
186 187 0.178900 ACCCTTCCTTCCTCGAACCT 60.179 55.000 0.00 0.00 0.00 3.50
187 188 0.036294 CACCCTTCCTTCCTCGAACC 60.036 60.000 0.00 0.00 0.00 3.62
188 189 0.685660 ACACCCTTCCTTCCTCGAAC 59.314 55.000 0.00 0.00 0.00 3.95
189 190 0.685097 CACACCCTTCCTTCCTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
190 191 1.192146 CCACACCCTTCCTTCCTCGA 61.192 60.000 0.00 0.00 0.00 4.04
191 192 1.296715 CCACACCCTTCCTTCCTCG 59.703 63.158 0.00 0.00 0.00 4.63
192 193 1.002011 GCCACACCCTTCCTTCCTC 60.002 63.158 0.00 0.00 0.00 3.71
193 194 2.539081 GGCCACACCCTTCCTTCCT 61.539 63.158 0.00 0.00 0.00 3.36
194 195 2.035783 GGCCACACCCTTCCTTCC 59.964 66.667 0.00 0.00 0.00 3.46
212 213 1.280142 CGATCTAGTCTCCGTGCCG 59.720 63.158 0.00 0.00 0.00 5.69
213 214 1.008309 GCGATCTAGTCTCCGTGCC 60.008 63.158 0.00 0.00 0.00 5.01
214 215 1.369448 CGCGATCTAGTCTCCGTGC 60.369 63.158 0.00 0.00 0.00 5.34
215 216 0.042013 GTCGCGATCTAGTCTCCGTG 60.042 60.000 14.06 0.00 0.00 4.94
216 217 1.159098 GGTCGCGATCTAGTCTCCGT 61.159 60.000 14.06 0.00 0.00 4.69
217 218 1.570475 GGTCGCGATCTAGTCTCCG 59.430 63.158 14.06 0.00 0.00 4.63
218 219 1.159098 ACGGTCGCGATCTAGTCTCC 61.159 60.000 18.66 7.95 0.00 3.71
219 220 0.042013 CACGGTCGCGATCTAGTCTC 60.042 60.000 18.66 0.00 0.00 3.36
220 221 1.437772 CCACGGTCGCGATCTAGTCT 61.438 60.000 18.66 0.00 0.00 3.24
221 222 1.009900 CCACGGTCGCGATCTAGTC 60.010 63.158 18.66 0.00 0.00 2.59
222 223 3.108343 CCACGGTCGCGATCTAGT 58.892 61.111 18.66 5.89 0.00 2.57
223 224 2.353607 GCCACGGTCGCGATCTAG 60.354 66.667 18.66 9.35 0.00 2.43
224 225 2.827190 AGCCACGGTCGCGATCTA 60.827 61.111 18.66 0.00 0.00 1.98
225 226 4.498520 CAGCCACGGTCGCGATCT 62.499 66.667 18.66 1.30 0.00 2.75
226 227 4.492160 TCAGCCACGGTCGCGATC 62.492 66.667 14.06 11.92 0.00 3.69
227 228 4.498520 CTCAGCCACGGTCGCGAT 62.499 66.667 14.06 0.00 0.00 4.58
236 237 4.803426 CTCGGTCGCCTCAGCCAC 62.803 72.222 0.00 0.00 34.57 5.01
240 241 3.522731 CTCCCTCGGTCGCCTCAG 61.523 72.222 0.00 0.00 0.00 3.35
242 243 4.816984 TCCTCCCTCGGTCGCCTC 62.817 72.222 0.00 0.00 0.00 4.70
243 244 4.824515 CTCCTCCCTCGGTCGCCT 62.825 72.222 0.00 0.00 0.00 5.52
244 245 4.816984 TCTCCTCCCTCGGTCGCC 62.817 72.222 0.00 0.00 0.00 5.54
245 246 3.519930 GTCTCCTCCCTCGGTCGC 61.520 72.222 0.00 0.00 0.00 5.19
246 247 3.203412 CGTCTCCTCCCTCGGTCG 61.203 72.222 0.00 0.00 0.00 4.79
247 248 2.114051 GTCGTCTCCTCCCTCGGTC 61.114 68.421 0.00 0.00 0.00 4.79
248 249 2.045143 GTCGTCTCCTCCCTCGGT 60.045 66.667 0.00 0.00 0.00 4.69
249 250 0.179026 TATGTCGTCTCCTCCCTCGG 60.179 60.000 0.00 0.00 0.00 4.63
250 251 0.945813 GTATGTCGTCTCCTCCCTCG 59.054 60.000 0.00 0.00 0.00 4.63
251 252 1.320507 GGTATGTCGTCTCCTCCCTC 58.679 60.000 0.00 0.00 0.00 4.30
252 253 0.629596 TGGTATGTCGTCTCCTCCCT 59.370 55.000 0.00 0.00 0.00 4.20
253 254 1.033574 CTGGTATGTCGTCTCCTCCC 58.966 60.000 0.00 0.00 0.00 4.30
254 255 1.677052 GTCTGGTATGTCGTCTCCTCC 59.323 57.143 0.00 0.00 0.00 4.30
255 256 1.677052 GGTCTGGTATGTCGTCTCCTC 59.323 57.143 0.00 0.00 0.00 3.71
256 257 1.005569 TGGTCTGGTATGTCGTCTCCT 59.994 52.381 0.00 0.00 0.00 3.69
257 258 1.134560 GTGGTCTGGTATGTCGTCTCC 59.865 57.143 0.00 0.00 0.00 3.71
258 259 2.093106 AGTGGTCTGGTATGTCGTCTC 58.907 52.381 0.00 0.00 0.00 3.36
259 260 2.093106 GAGTGGTCTGGTATGTCGTCT 58.907 52.381 0.00 0.00 0.00 4.18
260 261 2.093106 AGAGTGGTCTGGTATGTCGTC 58.907 52.381 0.00 0.00 0.00 4.20
261 262 2.093106 GAGAGTGGTCTGGTATGTCGT 58.907 52.381 0.00 0.00 30.97 4.34
262 263 1.064208 CGAGAGTGGTCTGGTATGTCG 59.936 57.143 0.00 0.00 30.97 4.35
263 264 2.093106 ACGAGAGTGGTCTGGTATGTC 58.907 52.381 0.00 0.00 46.97 3.06
264 265 2.217510 ACGAGAGTGGTCTGGTATGT 57.782 50.000 0.00 0.00 46.97 2.29
277 278 1.889829 ACTTTGTGGGAGAGACGAGAG 59.110 52.381 0.00 0.00 0.00 3.20
278 279 1.613925 CACTTTGTGGGAGAGACGAGA 59.386 52.381 0.00 0.00 0.00 4.04
279 280 1.613925 TCACTTTGTGGGAGAGACGAG 59.386 52.381 0.00 0.00 33.87 4.18
280 281 1.340248 GTCACTTTGTGGGAGAGACGA 59.660 52.381 0.00 0.00 33.87 4.20
281 282 1.068588 TGTCACTTTGTGGGAGAGACG 59.931 52.381 0.00 0.00 37.49 4.18
282 283 2.910688 TGTCACTTTGTGGGAGAGAC 57.089 50.000 0.00 0.00 35.94 3.36
283 284 2.771943 ACTTGTCACTTTGTGGGAGAGA 59.228 45.455 0.00 0.00 33.87 3.10
284 285 3.134458 GACTTGTCACTTTGTGGGAGAG 58.866 50.000 0.00 0.00 33.87 3.20
285 286 2.483013 CGACTTGTCACTTTGTGGGAGA 60.483 50.000 1.59 0.00 33.87 3.71
286 287 1.867233 CGACTTGTCACTTTGTGGGAG 59.133 52.381 1.59 0.00 33.87 4.30
287 288 1.948104 CGACTTGTCACTTTGTGGGA 58.052 50.000 1.59 0.00 33.87 4.37
288 289 0.307760 GCGACTTGTCACTTTGTGGG 59.692 55.000 1.59 0.00 33.87 4.61
289 290 1.013596 TGCGACTTGTCACTTTGTGG 58.986 50.000 1.59 0.00 33.87 4.17
290 291 2.159585 TGTTGCGACTTGTCACTTTGTG 60.160 45.455 5.50 0.00 34.45 3.33
291 292 2.080693 TGTTGCGACTTGTCACTTTGT 58.919 42.857 5.50 0.00 0.00 2.83
292 293 2.440501 GTGTTGCGACTTGTCACTTTG 58.559 47.619 5.50 0.00 0.00 2.77
293 294 1.400494 GGTGTTGCGACTTGTCACTTT 59.600 47.619 5.50 0.00 0.00 2.66
294 295 1.014352 GGTGTTGCGACTTGTCACTT 58.986 50.000 5.50 0.00 0.00 3.16
295 296 0.107897 TGGTGTTGCGACTTGTCACT 60.108 50.000 5.50 0.00 0.00 3.41
296 297 0.027586 GTGGTGTTGCGACTTGTCAC 59.972 55.000 5.50 5.03 0.00 3.67
297 298 0.391793 TGTGGTGTTGCGACTTGTCA 60.392 50.000 5.50 0.00 0.00 3.58
298 299 0.730265 TTGTGGTGTTGCGACTTGTC 59.270 50.000 5.50 0.00 0.00 3.18
299 300 0.450184 GTTGTGGTGTTGCGACTTGT 59.550 50.000 5.50 0.00 0.00 3.16
300 301 0.449786 TGTTGTGGTGTTGCGACTTG 59.550 50.000 5.50 0.00 0.00 3.16
301 302 0.450184 GTGTTGTGGTGTTGCGACTT 59.550 50.000 5.50 0.00 0.00 3.01
302 303 1.701545 CGTGTTGTGGTGTTGCGACT 61.702 55.000 5.50 0.00 0.00 4.18
303 304 1.297304 CGTGTTGTGGTGTTGCGAC 60.297 57.895 0.00 0.00 0.00 5.19
314 315 7.227910 ACTTTGTTGATTTCTATACCGTGTTGT 59.772 33.333 0.00 0.00 0.00 3.32
449 451 9.282569 TCCAAACATTCCTTAAAATTTTCCATG 57.717 29.630 6.72 6.46 0.00 3.66
450 452 9.506018 CTCCAAACATTCCTTAAAATTTTCCAT 57.494 29.630 6.72 0.00 0.00 3.41
458 460 7.014711 TGCATACACTCCAAACATTCCTTAAAA 59.985 33.333 0.00 0.00 0.00 1.52
537 539 9.045223 GTTTGGAAGTAAAATTTTCAGAGCATT 57.955 29.630 6.72 0.00 0.00 3.56
609 615 4.233789 GCATGCCAAGTTTTATCACGAAA 58.766 39.130 6.36 0.00 0.00 3.46
622 629 2.512485 TTTCTGTTGTGCATGCCAAG 57.488 45.000 16.68 8.18 0.00 3.61
675 719 0.464373 GCTCATCCGGGCTCAAATGA 60.464 55.000 0.00 0.74 0.00 2.57
730 774 2.609459 AGATGTCGTCGATTGATTTGCC 59.391 45.455 0.00 0.00 0.00 4.52
810 3607 0.338814 ACCATACCGGACCTTCTCCT 59.661 55.000 9.46 0.00 36.80 3.69
826 3623 1.347707 CAAACTCTCTGTGGCCTACCA 59.652 52.381 3.32 0.00 46.51 3.25
858 3655 9.869844 GAATACATCCATTTGAGAAATAAGACG 57.130 33.333 0.00 0.00 0.00 4.18
922 3722 7.963532 ACTCAAGAATTTGTCTTAGTACTCCA 58.036 34.615 0.00 0.00 45.25 3.86
961 4525 5.295540 GGTATTTGATGAGGAGAAGTCAAGC 59.704 44.000 0.00 0.00 32.76 4.01
1029 4593 2.250190 GTAACCAACGTGCGCCAC 59.750 61.111 4.18 1.96 0.00 5.01
1030 4594 2.973600 GGTAACCAACGTGCGCCA 60.974 61.111 4.18 0.00 0.00 5.69
1031 4595 1.858372 AATGGTAACCAACGTGCGCC 61.858 55.000 4.18 0.00 36.95 6.53
1032 4596 0.453782 GAATGGTAACCAACGTGCGC 60.454 55.000 0.00 0.00 36.95 6.09
1033 4597 0.167251 GGAATGGTAACCAACGTGCG 59.833 55.000 0.00 0.00 36.95 5.34
1034 4598 1.199097 CTGGAATGGTAACCAACGTGC 59.801 52.381 0.00 0.00 36.95 5.34
1035 4599 2.482721 GTCTGGAATGGTAACCAACGTG 59.517 50.000 0.00 0.00 36.95 4.49
1036 4600 2.774687 GTCTGGAATGGTAACCAACGT 58.225 47.619 0.00 0.00 36.95 3.99
1037 4601 1.730064 CGTCTGGAATGGTAACCAACG 59.270 52.381 0.00 0.00 36.95 4.10
1038 4602 1.467342 GCGTCTGGAATGGTAACCAAC 59.533 52.381 0.00 0.00 36.95 3.77
1039 4603 1.612199 GGCGTCTGGAATGGTAACCAA 60.612 52.381 0.00 0.00 36.95 3.67
1040 4604 0.035820 GGCGTCTGGAATGGTAACCA 60.036 55.000 0.00 0.00 38.19 3.67
1041 4605 0.035820 TGGCGTCTGGAATGGTAACC 60.036 55.000 0.00 0.00 0.00 2.85
1042 4606 1.670811 CATGGCGTCTGGAATGGTAAC 59.329 52.381 0.00 0.00 0.00 2.50
1043 4607 1.408127 CCATGGCGTCTGGAATGGTAA 60.408 52.381 0.00 0.00 35.78 2.85
1044 4608 0.180171 CCATGGCGTCTGGAATGGTA 59.820 55.000 0.00 0.00 35.78 3.25
1045 4609 1.077501 CCATGGCGTCTGGAATGGT 60.078 57.895 0.00 0.00 35.78 3.55
1046 4610 1.077501 ACCATGGCGTCTGGAATGG 60.078 57.895 13.04 7.44 44.31 3.16
1047 4611 0.677731 ACACCATGGCGTCTGGAATG 60.678 55.000 13.04 1.18 37.22 2.67
1048 4612 0.392998 GACACCATGGCGTCTGGAAT 60.393 55.000 23.00 0.00 37.22 3.01
1049 4613 1.003839 GACACCATGGCGTCTGGAA 60.004 57.895 23.00 0.00 37.22 3.53
1050 4614 2.662596 GACACCATGGCGTCTGGA 59.337 61.111 23.00 0.00 37.22 3.86
1051 4615 2.436646 GGACACCATGGCGTCTGG 60.437 66.667 27.54 7.55 39.80 3.86
1052 4616 1.448540 GAGGACACCATGGCGTCTG 60.449 63.158 27.54 14.61 37.32 3.51
1053 4617 1.610673 AGAGGACACCATGGCGTCT 60.611 57.895 27.54 17.29 44.98 4.18
1054 4618 1.153549 GAGAGGACACCATGGCGTC 60.154 63.158 22.36 22.36 40.40 5.19
1055 4619 2.982130 GAGAGGACACCATGGCGT 59.018 61.111 13.04 8.85 0.00 5.68
1291 4883 1.762522 ATGGCCGAGCGGATCAATCT 61.763 55.000 13.94 0.00 37.50 2.40
1371 4963 7.653311 AGAACAGAAATTTGCTTGGTAATTGTC 59.347 33.333 0.00 0.00 0.00 3.18
1747 5345 8.330302 CAAATCAAGTTGCAAAGGAAAAAGTAG 58.670 33.333 0.00 0.00 0.00 2.57
1756 5355 4.053295 CAGTCCAAATCAAGTTGCAAAGG 58.947 43.478 0.00 0.00 0.00 3.11
1824 5423 2.009681 TCCTACTCTCAGTGGTGCAA 57.990 50.000 0.00 0.00 0.00 4.08
1825 5424 2.238084 ATCCTACTCTCAGTGGTGCA 57.762 50.000 0.00 0.00 0.00 4.57
1982 5687 1.538512 CTCGGTTGTAACTCTGACGGA 59.461 52.381 0.00 0.00 0.00 4.69
2033 5738 3.411351 CGTTCACGGAGTTGCGGG 61.411 66.667 0.00 0.00 41.61 6.13
2113 5818 7.619698 CCTAAATCTGGAAAAGGGGTAAGAAAT 59.380 37.037 0.00 0.00 0.00 2.17
2201 5906 4.392940 ACAGGCATCATAAATCTGCTACC 58.607 43.478 0.00 0.00 36.18 3.18
2209 5914 7.613585 TGATCAACAAAACAGGCATCATAAAT 58.386 30.769 0.00 0.00 0.00 1.40
2291 5996 7.121463 TGAAAACTAAAAGAGCACCAACACTTA 59.879 33.333 0.00 0.00 0.00 2.24
2328 6033 5.945191 TGTTCATCATGAGAAATGGTAAGCA 59.055 36.000 0.09 0.00 0.00 3.91
2383 6088 1.688197 ACCATGGTGAAACAAAGGCAG 59.312 47.619 18.99 0.00 39.98 4.85
2385 6090 3.068873 TGTTACCATGGTGAAACAAAGGC 59.931 43.478 28.17 5.20 39.98 4.35
2404 6109 4.018050 ACCTCCAAAATCCTCATAGCTGTT 60.018 41.667 0.00 0.00 0.00 3.16
2658 6363 1.341285 CCTCATCAACCATCTGCCCAA 60.341 52.381 0.00 0.00 0.00 4.12
2818 6523 8.512138 ACTGCACTTGGTAATAAAGAACATAAC 58.488 33.333 0.00 0.00 0.00 1.89
2954 6660 2.259618 GTACTGTACGTGCTCACATGG 58.740 52.381 4.97 0.00 37.10 3.66
2999 6705 6.071616 TGTTCATGTGCTAGCCGTATATATGA 60.072 38.462 13.29 9.57 0.00 2.15
3086 6798 3.574445 CTGATGCTGAGGCTGCGC 61.574 66.667 0.00 0.00 39.59 6.09
3087 6799 3.574445 GCTGATGCTGAGGCTGCG 61.574 66.667 0.00 0.00 39.59 5.18
3153 6865 3.259625 GTCTCTGCTTCCACTACTTCCTT 59.740 47.826 0.00 0.00 0.00 3.36
3174 6886 1.206072 CGTCCTCGTCTTCGTTCGT 59.794 57.895 0.00 0.00 38.33 3.85
3258 6970 1.812686 CTCCGGAACCCTGTCGTTCA 61.813 60.000 5.23 0.00 43.28 3.18
3298 7010 4.656117 TGATGACCGCGTGCACGT 62.656 61.111 36.80 20.53 42.22 4.49
3315 7027 2.455565 CCTCCGGCAATCCCATCCT 61.456 63.158 0.00 0.00 0.00 3.24
3362 7074 2.247635 TCCCTCTCATACAACCCTAGCT 59.752 50.000 0.00 0.00 0.00 3.32
3375 7087 2.685106 AGTTCACTCACTCCCTCTCA 57.315 50.000 0.00 0.00 0.00 3.27
3473 7185 4.373116 GGGCTGTTCGCGGACTCA 62.373 66.667 20.15 0.00 40.44 3.41
3501 7213 1.610624 GGAAGTGCCATTGTCCGAGAA 60.611 52.381 0.00 0.00 36.34 2.87
3550 7263 3.192422 TGCCGGTCAAGAATGGTTAATTG 59.808 43.478 1.90 0.00 0.00 2.32
3589 7302 2.270850 GGTTGCGGGTATGAGCCA 59.729 61.111 0.00 0.00 34.89 4.75
3672 7393 2.416431 GGAATAGGAGTTGTACACGCGT 60.416 50.000 5.58 5.58 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.