Multiple sequence alignment - TraesCS7B01G077800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G077800 chr7B 100.000 4375 0 0 1 4375 87175465 87171091 0.000000e+00 8080.0
1 TraesCS7B01G077800 chr7B 93.499 2492 120 17 834 3296 88244996 88247474 0.000000e+00 3666.0
2 TraesCS7B01G077800 chr7B 93.742 831 40 10 3546 4375 403574033 403574852 0.000000e+00 1236.0
3 TraesCS7B01G077800 chr7B 91.000 100 5 3 397 493 38682126 38682028 9.870000e-27 132.0
4 TraesCS7B01G077800 chr7D 94.302 2580 117 19 826 3391 126681412 126683975 0.000000e+00 3923.0
5 TraesCS7B01G077800 chr7D 96.664 2128 65 2 1159 3283 126507329 126505205 0.000000e+00 3531.0
6 TraesCS7B01G077800 chr7D 90.887 823 62 6 1497 2319 88363289 88362480 0.000000e+00 1092.0
7 TraesCS7B01G077800 chr7D 83.197 613 28 27 366 916 126508560 126507961 3.930000e-135 492.0
8 TraesCS7B01G077800 chr7D 100.000 48 0 0 3497 3544 126684204 126684251 6.030000e-14 89.8
9 TraesCS7B01G077800 chr7D 100.000 29 0 0 647 675 126681299 126681327 2.000000e-03 54.7
10 TraesCS7B01G077800 chr7A 94.238 1961 92 9 1337 3285 127607553 127609504 0.000000e+00 2976.0
11 TraesCS7B01G077800 chr7A 90.457 503 31 6 838 1332 127607010 127607503 0.000000e+00 647.0
12 TraesCS7B01G077800 chr7A 94.675 169 9 0 195 363 80564397 80564565 3.360000e-66 263.0
13 TraesCS7B01G077800 chr7A 100.000 28 0 0 3355 3382 127609584 127609611 8.000000e-03 52.8
14 TraesCS7B01G077800 chr2B 95.783 830 35 0 3546 4375 417891297 417890468 0.000000e+00 1339.0
15 TraesCS7B01G077800 chr2B 93.642 173 11 0 194 366 663834727 663834555 4.340000e-65 259.0
16 TraesCS7B01G077800 chr2B 91.667 120 10 0 3382 3501 175629150 175629269 2.710000e-37 167.0
17 TraesCS7B01G077800 chr2B 88.235 136 13 2 3375 3509 692166869 692166736 4.530000e-35 159.0
18 TraesCS7B01G077800 chr2B 89.256 121 13 0 3378 3498 6259371 6259491 7.580000e-33 152.0
19 TraesCS7B01G077800 chrUn 94.265 837 39 7 3546 4375 50011592 50012426 0.000000e+00 1271.0
20 TraesCS7B01G077800 chr5B 95.098 816 22 6 3578 4375 595123952 595124767 0.000000e+00 1269.0
21 TraesCS7B01G077800 chr5B 94.337 830 34 8 3546 4375 460944799 460945615 0.000000e+00 1260.0
22 TraesCS7B01G077800 chr5B 94.005 834 31 5 3546 4375 38184879 38185697 0.000000e+00 1245.0
23 TraesCS7B01G077800 chr5B 90.791 847 50 15 3546 4375 588885009 588884174 0.000000e+00 1107.0
24 TraesCS7B01G077800 chr5B 88.148 135 14 2 3376 3509 250732922 250733055 4.530000e-35 159.0
25 TraesCS7B01G077800 chr5B 90.000 120 12 0 3379 3498 270194670 270194789 5.860000e-34 156.0
26 TraesCS7B01G077800 chr5B 82.759 116 18 2 1152 1265 108797331 108797216 7.740000e-18 102.0
27 TraesCS7B01G077800 chr6B 93.567 855 29 9 3546 4375 23274620 23275473 0.000000e+00 1251.0
28 TraesCS7B01G077800 chr6B 93.364 859 31 9 3543 4375 670004520 670003662 0.000000e+00 1247.0
29 TraesCS7B01G077800 chr4D 91.859 823 52 6 1497 2319 33240758 33241565 0.000000e+00 1134.0
30 TraesCS7B01G077800 chr4D 73.891 992 227 28 2157 3138 122258737 122257768 6.910000e-98 368.0
31 TraesCS7B01G077800 chr4D 83.333 192 23 7 1109 1291 122303610 122303419 7.530000e-38 169.0
32 TraesCS7B01G077800 chr4D 84.496 129 18 2 4 131 7803850 7803723 4.590000e-25 126.0
33 TraesCS7B01G077800 chr5D 91.495 823 55 7 1497 2319 457999143 457998336 0.000000e+00 1118.0
34 TraesCS7B01G077800 chr5D 90.083 121 12 0 3378 3498 352456403 352456283 1.630000e-34 158.0
35 TraesCS7B01G077800 chr5D 90.291 103 6 3 394 493 560410869 560410970 9.870000e-27 132.0
36 TraesCS7B01G077800 chr3D 91.373 823 58 6 1497 2319 538375321 538374512 0.000000e+00 1114.0
37 TraesCS7B01G077800 chr3D 90.887 823 62 5 1497 2319 26470223 26471032 0.000000e+00 1092.0
38 TraesCS7B01G077800 chr3D 94.737 171 9 0 195 365 587265719 587265549 2.590000e-67 267.0
39 TraesCS7B01G077800 chr3D 89.320 103 7 3 394 493 420011893 420011994 4.590000e-25 126.0
40 TraesCS7B01G077800 chr3D 89.320 103 7 3 394 493 420046467 420046568 4.590000e-25 126.0
41 TraesCS7B01G077800 chr4A 74.419 946 212 26 2157 3093 448104143 448105067 3.190000e-101 379.0
42 TraesCS7B01G077800 chr4A 84.375 192 21 6 1109 1291 447777086 447777277 3.480000e-41 180.0
43 TraesCS7B01G077800 chr4A 90.291 103 6 3 394 493 479410504 479410605 9.870000e-27 132.0
44 TraesCS7B01G077800 chr4A 91.000 100 5 3 397 493 551777699 551777601 9.870000e-27 132.0
45 TraesCS7B01G077800 chr4A 80.000 105 17 4 1176 1278 447791835 447791937 1.690000e-09 75.0
46 TraesCS7B01G077800 chr4B 91.509 212 12 5 185 394 5002009 5001802 1.990000e-73 287.0
47 TraesCS7B01G077800 chr4B 87.324 142 18 0 1164 1305 186609246 186609105 3.500000e-36 163.0
48 TraesCS7B01G077800 chr4B 90.323 124 11 1 3375 3498 653940280 653940402 1.260000e-35 161.0
49 TraesCS7B01G077800 chr2A 94.857 175 9 0 195 369 488857773 488857599 1.550000e-69 274.0
50 TraesCS7B01G077800 chr2A 94.767 172 9 0 195 366 739380070 739379899 7.210000e-68 268.0
51 TraesCS7B01G077800 chr2A 88.710 124 14 0 3375 3498 211301780 211301657 7.580000e-33 152.0
52 TraesCS7B01G077800 chr1B 94.828 174 9 0 193 366 416083475 416083648 5.580000e-69 272.0
53 TraesCS7B01G077800 chr1B 94.798 173 9 0 195 367 58930649 58930477 2.010000e-68 270.0
54 TraesCS7B01G077800 chr1B 84.028 144 21 2 3362 3505 54875600 54875741 2.120000e-28 137.0
55 TraesCS7B01G077800 chr1B 87.500 64 8 0 3532 3595 547403803 547403866 1.690000e-09 75.0
56 TraesCS7B01G077800 chr6A 94.737 171 9 0 195 365 155791607 155791437 2.590000e-67 267.0
57 TraesCS7B01G077800 chr6A 90.566 106 10 0 366 471 7524639 7524534 1.640000e-29 141.0
58 TraesCS7B01G077800 chr3B 90.426 94 9 0 1158 1251 71265548 71265455 1.650000e-24 124.0
59 TraesCS7B01G077800 chr1D 93.846 65 3 1 429 493 290707190 290707127 3.600000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G077800 chr7B 87171091 87175465 4374 True 8080.000000 8080 100.000000 1 4375 1 chr7B.!!$R2 4374
1 TraesCS7B01G077800 chr7B 88244996 88247474 2478 False 3666.000000 3666 93.499000 834 3296 1 chr7B.!!$F1 2462
2 TraesCS7B01G077800 chr7B 403574033 403574852 819 False 1236.000000 1236 93.742000 3546 4375 1 chr7B.!!$F2 829
3 TraesCS7B01G077800 chr7D 126505205 126508560 3355 True 2011.500000 3531 89.930500 366 3283 2 chr7D.!!$R2 2917
4 TraesCS7B01G077800 chr7D 126681299 126684251 2952 False 1355.833333 3923 98.100667 647 3544 3 chr7D.!!$F1 2897
5 TraesCS7B01G077800 chr7D 88362480 88363289 809 True 1092.000000 1092 90.887000 1497 2319 1 chr7D.!!$R1 822
6 TraesCS7B01G077800 chr7A 127607010 127609611 2601 False 1225.266667 2976 94.898333 838 3382 3 chr7A.!!$F2 2544
7 TraesCS7B01G077800 chr2B 417890468 417891297 829 True 1339.000000 1339 95.783000 3546 4375 1 chr2B.!!$R1 829
8 TraesCS7B01G077800 chrUn 50011592 50012426 834 False 1271.000000 1271 94.265000 3546 4375 1 chrUn.!!$F1 829
9 TraesCS7B01G077800 chr5B 595123952 595124767 815 False 1269.000000 1269 95.098000 3578 4375 1 chr5B.!!$F5 797
10 TraesCS7B01G077800 chr5B 460944799 460945615 816 False 1260.000000 1260 94.337000 3546 4375 1 chr5B.!!$F4 829
11 TraesCS7B01G077800 chr5B 38184879 38185697 818 False 1245.000000 1245 94.005000 3546 4375 1 chr5B.!!$F1 829
12 TraesCS7B01G077800 chr5B 588884174 588885009 835 True 1107.000000 1107 90.791000 3546 4375 1 chr5B.!!$R2 829
13 TraesCS7B01G077800 chr6B 23274620 23275473 853 False 1251.000000 1251 93.567000 3546 4375 1 chr6B.!!$F1 829
14 TraesCS7B01G077800 chr6B 670003662 670004520 858 True 1247.000000 1247 93.364000 3543 4375 1 chr6B.!!$R1 832
15 TraesCS7B01G077800 chr4D 33240758 33241565 807 False 1134.000000 1134 91.859000 1497 2319 1 chr4D.!!$F1 822
16 TraesCS7B01G077800 chr4D 122257768 122258737 969 True 368.000000 368 73.891000 2157 3138 1 chr4D.!!$R2 981
17 TraesCS7B01G077800 chr5D 457998336 457999143 807 True 1118.000000 1118 91.495000 1497 2319 1 chr5D.!!$R2 822
18 TraesCS7B01G077800 chr3D 538374512 538375321 809 True 1114.000000 1114 91.373000 1497 2319 1 chr3D.!!$R1 822
19 TraesCS7B01G077800 chr3D 26470223 26471032 809 False 1092.000000 1092 90.887000 1497 2319 1 chr3D.!!$F1 822
20 TraesCS7B01G077800 chr4A 448104143 448105067 924 False 379.000000 379 74.419000 2157 3093 1 chr4A.!!$F3 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.104120 TGCATACACTAATCGGCGCT 59.896 50.0 7.64 0.00 0.00 5.92 F
325 326 0.106918 TTGGGGAGCAAGTGTCGTTT 60.107 50.0 0.00 0.00 0.00 3.60 F
351 352 0.111134 CGTGCATCAAGTGTCGTGTG 60.111 55.0 0.00 0.00 0.00 3.82 F
1803 2313 0.316689 GTTCTTGCCGACCAACAACG 60.317 55.0 0.00 0.00 0.00 4.10 F
3203 3722 0.036952 AGGACTTCCTCGTCGACGTA 60.037 55.0 34.40 21.01 44.77 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1657 2162 0.377203 GGAAAACATCGCCGGCTTAG 59.623 55.0 26.68 15.90 0.00 2.18 R
1658 2163 1.363145 CGGAAAACATCGCCGGCTTA 61.363 55.0 26.68 13.37 41.29 3.09 R
2021 2540 2.201921 TGCACTTCTCGTACTCCTCT 57.798 50.0 0.00 0.00 0.00 3.69 R
3328 3850 0.036732 GCAGTCCACTGAACCATGGA 59.963 55.0 21.47 0.00 46.59 3.41 R
4009 4754 2.106477 TTACATCGCACATGGCTTCA 57.894 45.0 0.00 0.00 41.67 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.376546 GGCGTTTGAGGCCCATTT 58.623 55.556 0.00 0.00 42.98 2.32
32 33 1.079888 GGCGTTTGAGGCCCATTTG 60.080 57.895 0.00 0.00 42.98 2.32
33 34 1.531739 GGCGTTTGAGGCCCATTTGA 61.532 55.000 0.00 0.00 42.98 2.69
34 35 0.109132 GCGTTTGAGGCCCATTTGAG 60.109 55.000 0.00 0.00 0.00 3.02
35 36 0.527565 CGTTTGAGGCCCATTTGAGG 59.472 55.000 0.00 0.00 0.00 3.86
43 44 3.520623 CCCATTTGAGGGGTCCATC 57.479 57.895 0.00 0.00 45.60 3.51
44 45 0.929244 CCCATTTGAGGGGTCCATCT 59.071 55.000 3.29 0.00 45.60 2.90
45 46 2.135189 CCCATTTGAGGGGTCCATCTA 58.865 52.381 3.29 0.00 45.60 1.98
46 47 2.107204 CCCATTTGAGGGGTCCATCTAG 59.893 54.545 3.29 0.00 45.60 2.43
47 48 3.048600 CCATTTGAGGGGTCCATCTAGA 58.951 50.000 0.00 0.00 0.00 2.43
48 49 3.654806 CCATTTGAGGGGTCCATCTAGAT 59.345 47.826 0.00 0.00 0.00 1.98
49 50 4.263243 CCATTTGAGGGGTCCATCTAGATC 60.263 50.000 1.03 0.00 0.00 2.75
50 51 2.704190 TGAGGGGTCCATCTAGATCC 57.296 55.000 1.03 1.06 36.18 3.36
51 52 1.866269 TGAGGGGTCCATCTAGATCCA 59.134 52.381 1.03 0.00 38.96 3.41
52 53 2.250008 TGAGGGGTCCATCTAGATCCAA 59.750 50.000 1.03 0.00 38.96 3.53
53 54 3.311327 TGAGGGGTCCATCTAGATCCAAA 60.311 47.826 1.03 0.00 38.96 3.28
54 55 3.913163 GAGGGGTCCATCTAGATCCAAAT 59.087 47.826 1.03 0.00 38.96 2.32
55 56 4.319515 AGGGGTCCATCTAGATCCAAATT 58.680 43.478 1.03 0.00 38.96 1.82
56 57 4.733988 AGGGGTCCATCTAGATCCAAATTT 59.266 41.667 1.03 0.00 38.96 1.82
57 58 5.073428 GGGGTCCATCTAGATCCAAATTTC 58.927 45.833 1.03 0.00 38.96 2.17
58 59 4.757149 GGGTCCATCTAGATCCAAATTTCG 59.243 45.833 1.03 0.00 36.98 3.46
59 60 5.368989 GGTCCATCTAGATCCAAATTTCGT 58.631 41.667 1.03 0.00 0.00 3.85
60 61 5.237344 GGTCCATCTAGATCCAAATTTCGTG 59.763 44.000 1.03 0.00 0.00 4.35
61 62 6.049149 GTCCATCTAGATCCAAATTTCGTGA 58.951 40.000 1.03 0.00 0.00 4.35
62 63 6.018669 GTCCATCTAGATCCAAATTTCGTGAC 60.019 42.308 1.03 0.00 0.00 3.67
63 64 5.237344 CCATCTAGATCCAAATTTCGTGACC 59.763 44.000 1.03 0.00 0.00 4.02
64 65 4.430007 TCTAGATCCAAATTTCGTGACCG 58.570 43.478 0.00 0.00 0.00 4.79
65 66 2.356135 AGATCCAAATTTCGTGACCGG 58.644 47.619 0.00 0.00 33.95 5.28
66 67 2.027561 AGATCCAAATTTCGTGACCGGA 60.028 45.455 9.46 0.00 33.95 5.14
67 68 1.515081 TCCAAATTTCGTGACCGGAC 58.485 50.000 9.46 1.07 33.95 4.79
68 69 1.202663 TCCAAATTTCGTGACCGGACA 60.203 47.619 9.46 5.04 33.95 4.02
69 70 1.196808 CCAAATTTCGTGACCGGACAG 59.803 52.381 9.46 2.48 33.95 3.51
70 71 0.872388 AAATTTCGTGACCGGACAGC 59.128 50.000 9.46 2.21 33.95 4.40
71 72 1.289109 AATTTCGTGACCGGACAGCG 61.289 55.000 9.46 15.01 33.95 5.18
72 73 2.149803 ATTTCGTGACCGGACAGCGA 62.150 55.000 20.40 20.40 33.95 4.93
73 74 3.547249 TTCGTGACCGGACAGCGAC 62.547 63.158 22.62 6.63 33.95 5.19
96 97 4.329831 GGCCTGCCCGAACATTTA 57.670 55.556 0.00 0.00 0.00 1.40
97 98 2.573920 GGCCTGCCCGAACATTTAA 58.426 52.632 0.00 0.00 0.00 1.52
98 99 0.455815 GGCCTGCCCGAACATTTAAG 59.544 55.000 0.00 0.00 0.00 1.85
99 100 1.459450 GCCTGCCCGAACATTTAAGA 58.541 50.000 0.00 0.00 0.00 2.10
100 101 1.132453 GCCTGCCCGAACATTTAAGAC 59.868 52.381 0.00 0.00 0.00 3.01
101 102 1.396996 CCTGCCCGAACATTTAAGACG 59.603 52.381 0.00 0.00 0.00 4.18
102 103 1.396996 CTGCCCGAACATTTAAGACGG 59.603 52.381 0.00 0.00 42.67 4.79
108 109 5.610235 CCGAACATTTAAGACGGGTTTAA 57.390 39.130 0.00 0.00 39.92 1.52
109 110 5.624292 CCGAACATTTAAGACGGGTTTAAG 58.376 41.667 0.00 0.00 39.92 1.85
110 111 5.391203 CCGAACATTTAAGACGGGTTTAAGG 60.391 44.000 0.00 0.00 39.92 2.69
111 112 5.381174 AACATTTAAGACGGGTTTAAGGC 57.619 39.130 0.00 0.00 0.00 4.35
112 113 3.437741 ACATTTAAGACGGGTTTAAGGCG 59.562 43.478 0.00 0.00 0.00 5.52
113 114 2.837532 TTAAGACGGGTTTAAGGCGT 57.162 45.000 0.00 0.00 0.00 5.68
114 115 2.368655 TAAGACGGGTTTAAGGCGTC 57.631 50.000 0.00 0.00 0.00 5.19
115 116 0.321034 AAGACGGGTTTAAGGCGTCC 60.321 55.000 0.00 0.00 0.00 4.79
116 117 2.047939 ACGGGTTTAAGGCGTCCG 60.048 61.111 2.33 2.33 45.42 4.79
117 118 2.262292 CGGGTTTAAGGCGTCCGA 59.738 61.111 0.00 0.00 42.94 4.55
118 119 1.153509 CGGGTTTAAGGCGTCCGAT 60.154 57.895 0.00 0.00 42.94 4.18
119 120 0.741927 CGGGTTTAAGGCGTCCGATT 60.742 55.000 0.00 0.00 42.94 3.34
120 121 0.730840 GGGTTTAAGGCGTCCGATTG 59.269 55.000 0.00 0.00 0.00 2.67
121 122 1.445871 GGTTTAAGGCGTCCGATTGT 58.554 50.000 0.00 0.00 0.00 2.71
122 123 2.620242 GGTTTAAGGCGTCCGATTGTA 58.380 47.619 0.00 0.00 0.00 2.41
123 124 2.606272 GGTTTAAGGCGTCCGATTGTAG 59.394 50.000 0.00 0.00 0.00 2.74
124 125 3.514645 GTTTAAGGCGTCCGATTGTAGA 58.485 45.455 0.00 0.00 0.00 2.59
125 126 4.117685 GTTTAAGGCGTCCGATTGTAGAT 58.882 43.478 0.00 0.00 0.00 1.98
126 127 2.225068 AAGGCGTCCGATTGTAGATG 57.775 50.000 0.00 0.00 0.00 2.90
127 128 0.249489 AGGCGTCCGATTGTAGATGC 60.249 55.000 0.00 0.00 42.99 3.91
128 129 0.249489 GGCGTCCGATTGTAGATGCT 60.249 55.000 4.40 0.00 43.21 3.79
129 130 1.132588 GCGTCCGATTGTAGATGCTC 58.867 55.000 0.00 0.00 40.99 4.26
130 131 1.269309 GCGTCCGATTGTAGATGCTCT 60.269 52.381 0.00 0.00 40.99 4.09
131 132 2.031069 GCGTCCGATTGTAGATGCTCTA 60.031 50.000 0.00 0.00 40.99 2.43
132 133 3.550233 GCGTCCGATTGTAGATGCTCTAA 60.550 47.826 0.00 0.00 40.99 2.10
133 134 4.607955 CGTCCGATTGTAGATGCTCTAAA 58.392 43.478 0.00 0.00 29.58 1.85
134 135 5.223382 CGTCCGATTGTAGATGCTCTAAAT 58.777 41.667 0.00 0.00 29.58 1.40
135 136 6.379386 CGTCCGATTGTAGATGCTCTAAATA 58.621 40.000 0.00 0.00 29.58 1.40
136 137 6.305877 CGTCCGATTGTAGATGCTCTAAATAC 59.694 42.308 0.00 0.00 29.58 1.89
137 138 7.145985 GTCCGATTGTAGATGCTCTAAATACA 58.854 38.462 0.00 0.00 29.58 2.29
138 139 7.327275 GTCCGATTGTAGATGCTCTAAATACAG 59.673 40.741 0.00 0.00 29.58 2.74
139 140 6.587990 CCGATTGTAGATGCTCTAAATACAGG 59.412 42.308 0.00 0.00 29.58 4.00
140 141 7.148641 CGATTGTAGATGCTCTAAATACAGGT 58.851 38.462 0.00 0.00 29.58 4.00
141 142 7.653713 CGATTGTAGATGCTCTAAATACAGGTT 59.346 37.037 0.00 0.00 29.58 3.50
142 143 9.982651 GATTGTAGATGCTCTAAATACAGGTTA 57.017 33.333 0.00 0.00 29.58 2.85
148 149 9.935241 AGATGCTCTAAATACAGGTTATACATG 57.065 33.333 0.00 0.00 35.77 3.21
149 150 7.962964 TGCTCTAAATACAGGTTATACATGC 57.037 36.000 0.00 0.00 32.34 4.06
150 151 7.505258 TGCTCTAAATACAGGTTATACATGCA 58.495 34.615 0.00 0.00 32.34 3.96
151 152 7.441157 TGCTCTAAATACAGGTTATACATGCAC 59.559 37.037 0.00 0.00 32.34 4.57
152 153 7.359264 GCTCTAAATACAGGTTATACATGCACG 60.359 40.741 0.00 0.00 32.34 5.34
153 154 7.494211 TCTAAATACAGGTTATACATGCACGT 58.506 34.615 0.00 0.00 32.34 4.49
154 155 8.631797 TCTAAATACAGGTTATACATGCACGTA 58.368 33.333 0.00 0.00 32.34 3.57
155 156 9.251792 CTAAATACAGGTTATACATGCACGTAA 57.748 33.333 0.00 0.00 32.34 3.18
156 157 8.671384 AAATACAGGTTATACATGCACGTAAT 57.329 30.769 0.00 0.00 32.34 1.89
157 158 8.671384 AATACAGGTTATACATGCACGTAATT 57.329 30.769 0.00 0.00 32.34 1.40
158 159 6.995511 ACAGGTTATACATGCACGTAATTT 57.004 33.333 0.00 0.00 32.34 1.82
159 160 9.767228 ATACAGGTTATACATGCACGTAATTTA 57.233 29.630 0.00 0.00 32.34 1.40
160 161 8.495361 ACAGGTTATACATGCACGTAATTTAA 57.505 30.769 0.00 0.00 32.34 1.52
161 162 8.948145 ACAGGTTATACATGCACGTAATTTAAA 58.052 29.630 0.00 0.00 32.34 1.52
162 163 9.776158 CAGGTTATACATGCACGTAATTTAAAA 57.224 29.630 0.00 0.00 0.00 1.52
171 172 9.950858 CATGCACGTAATTTAAAAATACAAAGG 57.049 29.630 12.37 2.55 0.00 3.11
172 173 8.008902 TGCACGTAATTTAAAAATACAAAGGC 57.991 30.769 12.37 10.11 0.00 4.35
173 174 7.868415 TGCACGTAATTTAAAAATACAAAGGCT 59.132 29.630 12.37 0.00 0.00 4.58
174 175 8.705134 GCACGTAATTTAAAAATACAAAGGCTT 58.295 29.630 0.00 0.00 0.00 4.35
184 185 1.890876 ACAAAGGCTTGTATCGTGCA 58.109 45.000 0.00 0.00 44.14 4.57
185 186 2.436417 ACAAAGGCTTGTATCGTGCAT 58.564 42.857 0.00 0.00 44.14 3.96
186 187 3.605634 ACAAAGGCTTGTATCGTGCATA 58.394 40.909 0.00 0.00 44.14 3.14
187 188 3.374058 ACAAAGGCTTGTATCGTGCATAC 59.626 43.478 0.00 0.00 44.14 2.39
188 189 2.979814 AGGCTTGTATCGTGCATACA 57.020 45.000 0.00 0.00 44.86 2.29
189 190 2.550978 AGGCTTGTATCGTGCATACAC 58.449 47.619 0.00 0.00 45.97 2.90
190 191 2.168521 AGGCTTGTATCGTGCATACACT 59.831 45.455 0.00 0.00 45.97 3.55
191 192 3.383505 AGGCTTGTATCGTGCATACACTA 59.616 43.478 0.00 0.00 45.97 2.74
192 193 4.116961 GGCTTGTATCGTGCATACACTAA 58.883 43.478 0.00 0.00 45.97 2.24
193 194 4.750098 GGCTTGTATCGTGCATACACTAAT 59.250 41.667 0.00 0.00 45.97 1.73
194 195 5.107453 GGCTTGTATCGTGCATACACTAATC 60.107 44.000 0.00 0.00 45.97 1.75
195 196 5.387444 GCTTGTATCGTGCATACACTAATCG 60.387 44.000 0.00 0.00 45.97 3.34
196 197 4.542735 TGTATCGTGCATACACTAATCGG 58.457 43.478 0.00 0.00 42.19 4.18
197 198 1.847818 TCGTGCATACACTAATCGGC 58.152 50.000 0.00 0.00 45.10 5.54
198 199 0.502695 CGTGCATACACTAATCGGCG 59.497 55.000 0.00 0.00 45.10 6.46
199 200 0.232303 GTGCATACACTAATCGGCGC 59.768 55.000 0.00 0.00 43.85 6.53
200 201 0.104120 TGCATACACTAATCGGCGCT 59.896 50.000 7.64 0.00 0.00 5.92
201 202 0.508641 GCATACACTAATCGGCGCTG 59.491 55.000 10.86 10.86 0.00 5.18
202 203 1.852942 CATACACTAATCGGCGCTGT 58.147 50.000 17.37 8.84 0.00 4.40
203 204 2.201732 CATACACTAATCGGCGCTGTT 58.798 47.619 17.37 12.22 0.00 3.16
204 205 3.377439 CATACACTAATCGGCGCTGTTA 58.623 45.455 17.37 12.69 0.00 2.41
205 206 2.596904 ACACTAATCGGCGCTGTTAT 57.403 45.000 17.37 0.00 0.00 1.89
206 207 3.720949 ACACTAATCGGCGCTGTTATA 57.279 42.857 17.37 7.12 0.00 0.98
207 208 3.378339 ACACTAATCGGCGCTGTTATAC 58.622 45.455 17.37 0.00 0.00 1.47
208 209 3.181484 ACACTAATCGGCGCTGTTATACA 60.181 43.478 17.37 0.00 0.00 2.29
226 227 2.879002 CAGACGACATATCTGTGGCT 57.121 50.000 0.00 0.00 39.04 4.75
227 228 2.467838 CAGACGACATATCTGTGGCTG 58.532 52.381 0.00 0.00 39.04 4.85
228 229 2.099756 CAGACGACATATCTGTGGCTGA 59.900 50.000 9.47 0.00 39.72 4.26
229 230 2.099921 AGACGACATATCTGTGGCTGAC 59.900 50.000 0.00 0.00 35.14 3.51
230 231 2.099921 GACGACATATCTGTGGCTGACT 59.900 50.000 0.00 0.00 35.14 3.41
231 232 2.099921 ACGACATATCTGTGGCTGACTC 59.900 50.000 0.00 0.00 35.14 3.36
232 233 2.360483 CGACATATCTGTGGCTGACTCT 59.640 50.000 0.00 0.00 35.14 3.24
233 234 3.181482 CGACATATCTGTGGCTGACTCTT 60.181 47.826 0.00 0.00 35.14 2.85
234 235 4.118410 GACATATCTGTGGCTGACTCTTG 58.882 47.826 0.00 0.00 35.14 3.02
235 236 2.680312 TATCTGTGGCTGACTCTTGC 57.320 50.000 0.00 0.00 0.00 4.01
236 237 0.689055 ATCTGTGGCTGACTCTTGCA 59.311 50.000 0.00 0.00 0.00 4.08
237 238 0.250038 TCTGTGGCTGACTCTTGCAC 60.250 55.000 0.00 0.00 0.00 4.57
238 239 1.563435 CTGTGGCTGACTCTTGCACG 61.563 60.000 0.00 0.00 0.00 5.34
239 240 1.300931 GTGGCTGACTCTTGCACGA 60.301 57.895 0.00 0.00 0.00 4.35
240 241 0.671781 GTGGCTGACTCTTGCACGAT 60.672 55.000 0.00 0.00 0.00 3.73
241 242 0.390340 TGGCTGACTCTTGCACGATC 60.390 55.000 0.00 0.00 0.00 3.69
242 243 0.108424 GGCTGACTCTTGCACGATCT 60.108 55.000 0.00 0.00 0.00 2.75
243 244 1.674221 GGCTGACTCTTGCACGATCTT 60.674 52.381 0.00 0.00 0.00 2.40
244 245 2.417379 GGCTGACTCTTGCACGATCTTA 60.417 50.000 0.00 0.00 0.00 2.10
245 246 2.600867 GCTGACTCTTGCACGATCTTAC 59.399 50.000 0.00 0.00 0.00 2.34
246 247 3.674682 GCTGACTCTTGCACGATCTTACT 60.675 47.826 0.00 0.00 0.00 2.24
247 248 4.489810 CTGACTCTTGCACGATCTTACTT 58.510 43.478 0.00 0.00 0.00 2.24
248 249 4.237724 TGACTCTTGCACGATCTTACTTG 58.762 43.478 0.00 0.00 0.00 3.16
249 250 3.589988 ACTCTTGCACGATCTTACTTGG 58.410 45.455 0.00 0.00 0.00 3.61
250 251 2.346803 TCTTGCACGATCTTACTTGGC 58.653 47.619 0.00 0.00 0.00 4.52
251 252 2.076100 CTTGCACGATCTTACTTGGCA 58.924 47.619 0.00 0.00 0.00 4.92
252 253 1.725641 TGCACGATCTTACTTGGCAG 58.274 50.000 0.00 0.00 0.00 4.85
253 254 0.375106 GCACGATCTTACTTGGCAGC 59.625 55.000 0.00 0.00 0.00 5.25
254 255 2.009042 GCACGATCTTACTTGGCAGCT 61.009 52.381 0.00 0.00 0.00 4.24
255 256 1.662629 CACGATCTTACTTGGCAGCTG 59.337 52.381 10.11 10.11 0.00 4.24
256 257 0.654683 CGATCTTACTTGGCAGCTGC 59.345 55.000 30.88 30.88 41.14 5.25
266 267 4.395583 GCAGCTGCCTGTGAACGC 62.396 66.667 28.76 0.00 41.26 4.84
267 268 2.974148 CAGCTGCCTGTGAACGCA 60.974 61.111 0.00 0.00 34.31 5.24
274 275 4.047834 CTGTGAACGCAGGAAGCA 57.952 55.556 7.39 0.00 46.13 3.91
275 276 2.320215 CTGTGAACGCAGGAAGCAA 58.680 52.632 7.39 0.00 46.13 3.91
276 277 0.877071 CTGTGAACGCAGGAAGCAAT 59.123 50.000 7.39 0.00 46.13 3.56
277 278 1.267806 CTGTGAACGCAGGAAGCAATT 59.732 47.619 7.39 0.00 46.13 2.32
278 279 1.001487 TGTGAACGCAGGAAGCAATTG 60.001 47.619 0.00 0.00 46.13 2.32
279 280 1.001378 GTGAACGCAGGAAGCAATTGT 60.001 47.619 7.40 0.00 46.13 2.71
280 281 1.680735 TGAACGCAGGAAGCAATTGTT 59.319 42.857 7.40 0.00 46.13 2.83
281 282 2.100584 TGAACGCAGGAAGCAATTGTTT 59.899 40.909 7.30 7.30 46.13 2.83
282 283 2.888834 ACGCAGGAAGCAATTGTTTT 57.111 40.000 9.04 3.18 46.13 2.43
283 284 3.177997 ACGCAGGAAGCAATTGTTTTT 57.822 38.095 9.04 0.68 46.13 1.94
307 308 2.892425 GCTGATGCTAGCGCGGTT 60.892 61.111 19.09 0.00 39.65 4.44
308 309 3.009140 CTGATGCTAGCGCGGTTG 58.991 61.111 19.09 16.93 39.65 3.77
309 310 2.511373 TGATGCTAGCGCGGTTGG 60.511 61.111 19.09 11.47 39.65 3.77
310 311 3.272334 GATGCTAGCGCGGTTGGG 61.272 66.667 19.09 8.71 39.65 4.12
311 312 4.856801 ATGCTAGCGCGGTTGGGG 62.857 66.667 19.09 6.01 39.65 4.96
319 320 3.365265 GCGGTTGGGGAGCAAGTG 61.365 66.667 0.00 0.00 0.00 3.16
320 321 2.113139 CGGTTGGGGAGCAAGTGT 59.887 61.111 0.00 0.00 0.00 3.55
321 322 1.966451 CGGTTGGGGAGCAAGTGTC 60.966 63.158 0.00 0.00 0.00 3.67
322 323 1.966451 GGTTGGGGAGCAAGTGTCG 60.966 63.158 0.00 0.00 0.00 4.35
323 324 1.227853 GTTGGGGAGCAAGTGTCGT 60.228 57.895 0.00 0.00 0.00 4.34
324 325 0.818040 GTTGGGGAGCAAGTGTCGTT 60.818 55.000 0.00 0.00 0.00 3.85
325 326 0.106918 TTGGGGAGCAAGTGTCGTTT 60.107 50.000 0.00 0.00 0.00 3.60
326 327 0.817634 TGGGGAGCAAGTGTCGTTTG 60.818 55.000 0.00 0.00 0.00 2.93
332 333 1.955762 GCAAGTGTCGTTTGCTGATC 58.044 50.000 2.93 0.00 45.64 2.92
333 334 1.722751 GCAAGTGTCGTTTGCTGATCG 60.723 52.381 2.93 0.00 45.64 3.69
334 335 1.526887 CAAGTGTCGTTTGCTGATCGT 59.473 47.619 0.00 0.00 0.00 3.73
335 336 1.139989 AGTGTCGTTTGCTGATCGTG 58.860 50.000 0.00 0.00 0.00 4.35
336 337 0.451135 GTGTCGTTTGCTGATCGTGC 60.451 55.000 3.87 3.87 0.00 5.34
337 338 0.878086 TGTCGTTTGCTGATCGTGCA 60.878 50.000 8.82 8.82 38.80 4.57
338 339 0.443869 GTCGTTTGCTGATCGTGCAT 59.556 50.000 12.86 0.00 40.34 3.96
339 340 0.721154 TCGTTTGCTGATCGTGCATC 59.279 50.000 12.86 9.08 40.34 3.91
340 341 0.443478 CGTTTGCTGATCGTGCATCA 59.557 50.000 12.86 0.00 40.34 3.07
341 342 1.136000 CGTTTGCTGATCGTGCATCAA 60.136 47.619 12.86 4.33 41.25 2.57
342 343 2.512885 GTTTGCTGATCGTGCATCAAG 58.487 47.619 12.86 0.00 41.25 3.02
343 344 1.812235 TTGCTGATCGTGCATCAAGT 58.188 45.000 12.86 0.00 41.25 3.16
344 345 1.081094 TGCTGATCGTGCATCAAGTG 58.919 50.000 8.82 0.00 41.25 3.16
345 346 1.081892 GCTGATCGTGCATCAAGTGT 58.918 50.000 5.75 0.00 41.25 3.55
346 347 1.061711 GCTGATCGTGCATCAAGTGTC 59.938 52.381 5.75 0.00 41.25 3.67
347 348 1.322637 CTGATCGTGCATCAAGTGTCG 59.677 52.381 0.00 0.00 41.25 4.35
348 349 1.336795 TGATCGTGCATCAAGTGTCGT 60.337 47.619 0.00 0.00 38.68 4.34
349 350 1.059692 GATCGTGCATCAAGTGTCGTG 59.940 52.381 0.00 0.00 0.00 4.35
350 351 0.249280 TCGTGCATCAAGTGTCGTGT 60.249 50.000 0.00 0.00 0.00 4.49
351 352 0.111134 CGTGCATCAAGTGTCGTGTG 60.111 55.000 0.00 0.00 0.00 3.82
352 353 0.937304 GTGCATCAAGTGTCGTGTGT 59.063 50.000 0.00 0.00 0.00 3.72
353 354 0.936600 TGCATCAAGTGTCGTGTGTG 59.063 50.000 0.00 0.00 0.00 3.82
354 355 1.217001 GCATCAAGTGTCGTGTGTGA 58.783 50.000 0.00 0.00 0.00 3.58
355 356 1.597195 GCATCAAGTGTCGTGTGTGAA 59.403 47.619 0.00 0.00 0.00 3.18
356 357 2.348872 GCATCAAGTGTCGTGTGTGAAG 60.349 50.000 0.00 0.00 0.00 3.02
357 358 1.286501 TCAAGTGTCGTGTGTGAAGC 58.713 50.000 0.00 0.00 0.00 3.86
358 359 1.006086 CAAGTGTCGTGTGTGAAGCA 58.994 50.000 0.00 0.00 0.00 3.91
359 360 1.396648 CAAGTGTCGTGTGTGAAGCAA 59.603 47.619 0.00 0.00 0.00 3.91
360 361 1.953559 AGTGTCGTGTGTGAAGCAAT 58.046 45.000 0.00 0.00 0.00 3.56
361 362 2.288666 AGTGTCGTGTGTGAAGCAATT 58.711 42.857 0.00 0.00 0.00 2.32
362 363 2.682856 AGTGTCGTGTGTGAAGCAATTT 59.317 40.909 0.00 0.00 0.00 1.82
363 364 3.035942 GTGTCGTGTGTGAAGCAATTTC 58.964 45.455 0.00 0.00 36.29 2.17
364 365 2.286125 TGTCGTGTGTGAAGCAATTTCG 60.286 45.455 0.00 0.00 38.71 3.46
375 376 7.059488 GTGTGAAGCAATTTCGTACACTAATTG 59.941 37.037 14.97 14.97 38.61 2.32
378 379 7.962373 TGAAGCAATTTCGTACACTAATTGATG 59.038 33.333 20.04 4.17 40.14 3.07
379 380 7.609760 AGCAATTTCGTACACTAATTGATGA 57.390 32.000 20.04 0.00 40.14 2.92
402 403 2.637947 TGGTTCGCTTAGCAATGCATA 58.362 42.857 8.35 0.00 0.00 3.14
417 418 1.677576 TGCATACATGGCAAAGCTAGC 59.322 47.619 6.62 6.62 38.54 3.42
506 515 3.762247 CCGGCCTCCGTTCCGTAA 61.762 66.667 0.00 0.00 46.80 3.18
517 526 1.701704 GTTCCGTAACGATTCGGTGT 58.298 50.000 6.92 0.00 45.88 4.16
539 548 1.376037 GAGCTGCCGCCTTTACACT 60.376 57.895 0.00 0.00 36.60 3.55
555 564 2.124570 CTATGGCGGCAGGTGCTT 60.125 61.111 19.29 1.07 41.70 3.91
588 597 2.256461 GCCTGCTGCCGTCTTTTG 59.744 61.111 0.00 0.00 0.00 2.44
589 598 2.260869 GCCTGCTGCCGTCTTTTGA 61.261 57.895 0.00 0.00 0.00 2.69
678 728 3.234386 GAGTGCCAAAAAGATTACGTGC 58.766 45.455 0.00 0.00 0.00 5.34
686 736 1.343506 AAGATTACGTGCGTTCGTCC 58.656 50.000 9.87 3.01 43.12 4.79
701 752 1.603802 TCGTCCCACCGTACGATATTC 59.396 52.381 18.76 1.77 42.74 1.75
725 776 2.237526 GGACGAAAACTAGACGACGAC 58.762 52.381 0.00 0.00 0.00 4.34
735 786 3.873361 ACTAGACGACGACGAATCCATTA 59.127 43.478 15.32 0.00 42.66 1.90
750 801 1.269448 CCATTAGCGTGCCACAGTTTT 59.731 47.619 0.00 0.00 0.00 2.43
765 831 3.005791 ACAGTTTTGGCTGGCTTGATTAC 59.994 43.478 2.00 0.00 40.59 1.89
766 832 3.005684 CAGTTTTGGCTGGCTTGATTACA 59.994 43.478 2.00 0.00 33.11 2.41
767 833 3.834231 AGTTTTGGCTGGCTTGATTACAT 59.166 39.130 2.00 0.00 0.00 2.29
768 834 5.016173 AGTTTTGGCTGGCTTGATTACATA 58.984 37.500 2.00 0.00 0.00 2.29
782 848 6.344572 TGATTACATATGTCGTGCAAGAAC 57.655 37.500 12.68 0.00 0.00 3.01
788 854 4.243008 TCGTGCAAGAACCGGCCA 62.243 61.111 0.00 0.00 0.00 5.36
796 862 1.134098 CAAGAACCGGCCACCATCTAT 60.134 52.381 0.00 0.00 0.00 1.98
797 863 0.759346 AGAACCGGCCACCATCTATC 59.241 55.000 0.00 0.00 0.00 2.08
798 864 0.600255 GAACCGGCCACCATCTATCG 60.600 60.000 0.00 0.00 0.00 2.92
799 865 1.335132 AACCGGCCACCATCTATCGT 61.335 55.000 0.00 0.00 0.00 3.73
800 866 1.006102 CCGGCCACCATCTATCGTC 60.006 63.158 2.24 0.00 0.00 4.20
801 867 1.006102 CGGCCACCATCTATCGTCC 60.006 63.158 2.24 0.00 0.00 4.79
802 868 1.006102 GGCCACCATCTATCGTCCG 60.006 63.158 0.00 0.00 0.00 4.79
995 1069 2.666098 CGTCCCCCAACCCCAGTAG 61.666 68.421 0.00 0.00 0.00 2.57
1001 1075 1.281925 CCCAACCCCAGTAGCTCCAT 61.282 60.000 0.00 0.00 0.00 3.41
1025 1104 0.827368 GTCTCCATCCAGACCAGTCC 59.173 60.000 0.00 0.00 37.43 3.85
1054 1133 1.299850 CCACACTCGTCGCACTTCA 60.300 57.895 0.00 0.00 0.00 3.02
1292 1752 2.666026 CAGATCATATCCGACACCACG 58.334 52.381 0.00 0.00 0.00 4.94
1385 1890 1.302033 CAACAACTCGAGCTGGCCT 60.302 57.895 19.38 1.58 0.00 5.19
1656 2161 1.076632 GAGGAGAAGGAGGCCGAGA 60.077 63.158 0.00 0.00 0.00 4.04
1657 2162 1.380650 AGGAGAAGGAGGCCGAGAC 60.381 63.158 0.00 0.00 0.00 3.36
1658 2163 1.380650 GGAGAAGGAGGCCGAGACT 60.381 63.158 0.00 0.00 0.00 3.24
1803 2313 0.316689 GTTCTTGCCGACCAACAACG 60.317 55.000 0.00 0.00 0.00 4.10
1924 2443 0.892358 AAGTACAGGCACGACGAGGA 60.892 55.000 0.00 0.00 0.00 3.71
1925 2444 1.154073 GTACAGGCACGACGAGGAC 60.154 63.158 0.00 0.00 0.00 3.85
1926 2445 2.683859 TACAGGCACGACGAGGACG 61.684 63.158 0.00 0.00 45.75 4.79
2021 2540 6.749216 GAGATGTTCGACGAAATAATGCTA 57.251 37.500 12.67 0.00 0.00 3.49
2736 3255 4.988716 ACCCGGACGAGGTGCTCA 62.989 66.667 0.73 0.00 35.85 4.26
3203 3722 0.036952 AGGACTTCCTCGTCGACGTA 60.037 55.000 34.40 21.01 44.77 3.57
3270 3792 3.391665 CTCTCCACATGGGTCGCCC 62.392 68.421 7.87 7.87 45.71 6.13
3309 3831 6.091441 GCCTAGAAGTCTATCTTTTGTGTGTG 59.909 42.308 0.00 0.00 36.40 3.82
3310 3832 7.155328 CCTAGAAGTCTATCTTTTGTGTGTGT 58.845 38.462 0.00 0.00 36.40 3.72
3314 3836 9.046296 AGAAGTCTATCTTTTGTGTGTGTTTAG 57.954 33.333 0.00 0.00 36.40 1.85
3326 3848 4.065088 TGTGTGTTTAGCAACAGAGATCC 58.935 43.478 0.00 0.00 43.83 3.36
3327 3849 4.065088 GTGTGTTTAGCAACAGAGATCCA 58.935 43.478 0.00 0.00 43.83 3.41
3328 3850 4.697352 GTGTGTTTAGCAACAGAGATCCAT 59.303 41.667 0.00 0.00 43.83 3.41
3329 3851 4.937620 TGTGTTTAGCAACAGAGATCCATC 59.062 41.667 0.00 0.00 43.83 3.51
3330 3852 4.333926 GTGTTTAGCAACAGAGATCCATCC 59.666 45.833 0.00 0.00 43.83 3.51
3391 3950 4.683832 CAACAAGAATACTACTCCCTCCG 58.316 47.826 0.00 0.00 0.00 4.63
3393 3952 3.952967 ACAAGAATACTACTCCCTCCGTC 59.047 47.826 0.00 0.00 0.00 4.79
3395 3954 1.878734 GAATACTACTCCCTCCGTCCG 59.121 57.143 0.00 0.00 0.00 4.79
3396 3955 1.135094 ATACTACTCCCTCCGTCCGA 58.865 55.000 0.00 0.00 0.00 4.55
3397 3956 0.911769 TACTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
3398 3957 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
3402 3961 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3403 3962 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3404 3963 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3406 3965 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3408 3967 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3409 3968 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3412 3971 6.164876 TCCGTCCGAAAATACTTGTCATAAA 58.835 36.000 0.00 0.00 0.00 1.40
3413 3972 6.649973 TCCGTCCGAAAATACTTGTCATAAAA 59.350 34.615 0.00 0.00 0.00 1.52
3414 3973 7.172875 TCCGTCCGAAAATACTTGTCATAAAAA 59.827 33.333 0.00 0.00 0.00 1.94
3415 3974 7.966204 CCGTCCGAAAATACTTGTCATAAAAAT 59.034 33.333 0.00 0.00 0.00 1.82
3416 3975 8.785101 CGTCCGAAAATACTTGTCATAAAAATG 58.215 33.333 0.00 0.00 0.00 2.32
3417 3976 9.072294 GTCCGAAAATACTTGTCATAAAAATGG 57.928 33.333 0.00 0.00 0.00 3.16
3418 3977 9.015367 TCCGAAAATACTTGTCATAAAAATGGA 57.985 29.630 0.00 0.00 0.00 3.41
3431 3990 9.986833 GTCATAAAAATGGATAAAAATGGTTGC 57.013 29.630 0.00 0.00 0.00 4.17
3432 3991 9.730705 TCATAAAAATGGATAAAAATGGTTGCA 57.269 25.926 0.00 0.00 0.00 4.08
3435 3994 7.999450 AAAATGGATAAAAATGGTTGCATGT 57.001 28.000 0.00 0.00 0.00 3.21
3436 3995 9.512588 AAAAATGGATAAAAATGGTTGCATGTA 57.487 25.926 0.00 0.00 0.00 2.29
3437 3996 9.512588 AAAATGGATAAAAATGGTTGCATGTAA 57.487 25.926 0.00 0.00 0.00 2.41
3439 3998 9.512588 AATGGATAAAAATGGTTGCATGTAAAA 57.487 25.926 0.00 0.00 0.00 1.52
3440 3999 8.316640 TGGATAAAAATGGTTGCATGTAAAAC 57.683 30.769 0.00 0.00 0.00 2.43
3441 4000 8.153550 TGGATAAAAATGGTTGCATGTAAAACT 58.846 29.630 0.00 0.00 0.00 2.66
3451 4010 9.685828 TGGTTGCATGTAAAACTAAAATACTTC 57.314 29.630 0.00 0.00 0.00 3.01
3471 4030 9.751542 ATACTTCTAGATACAACCATTTCTTCG 57.248 33.333 0.00 0.00 0.00 3.79
3472 4031 7.837863 ACTTCTAGATACAACCATTTCTTCGA 58.162 34.615 0.00 0.00 0.00 3.71
3473 4032 7.760340 ACTTCTAGATACAACCATTTCTTCGAC 59.240 37.037 0.00 0.00 0.00 4.20
3474 4033 7.406031 TCTAGATACAACCATTTCTTCGACT 57.594 36.000 0.00 0.00 0.00 4.18
3476 4035 8.622157 TCTAGATACAACCATTTCTTCGACTAG 58.378 37.037 0.00 0.00 0.00 2.57
3477 4036 7.171630 AGATACAACCATTTCTTCGACTAGT 57.828 36.000 0.00 0.00 0.00 2.57
3481 4040 9.886132 ATACAACCATTTCTTCGACTAGTATTT 57.114 29.630 0.00 0.00 0.00 1.40
3487 4160 7.254017 CCATTTCTTCGACTAGTATTTTCGGAC 60.254 40.741 0.00 0.00 33.50 4.79
3813 4508 2.676822 TCGTCAGCTTCCTCGCCT 60.677 61.111 0.00 0.00 0.00 5.52
3984 4729 2.429069 GCCGGACGCAGCTTTTTG 60.429 61.111 5.05 0.00 37.47 2.44
3992 4737 1.143620 GCAGCTTTTTGTGTGGCCA 59.856 52.632 0.00 0.00 0.00 5.36
4009 4754 3.577848 TGGCCAGTTGTAGCAAAAATCAT 59.422 39.130 0.00 0.00 0.00 2.45
4037 4782 5.280164 CCATGTGCGATGTAATAAAATGCA 58.720 37.500 0.00 0.00 0.00 3.96
4085 4830 3.876914 CCGGTTGTAGCATATTGTGATGT 59.123 43.478 0.00 0.00 0.00 3.06
4146 4892 0.250295 CCTGTGACAACGGTGGTCAT 60.250 55.000 20.57 0.00 46.01 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.079888 CAAATGGGCCTCAAACGCC 60.080 57.895 4.53 0.00 46.29 5.68
15 16 0.109132 CTCAAATGGGCCTCAAACGC 60.109 55.000 4.53 0.00 0.00 4.84
16 17 0.527565 CCTCAAATGGGCCTCAAACG 59.472 55.000 4.53 0.00 0.00 3.60
17 18 0.897621 CCCTCAAATGGGCCTCAAAC 59.102 55.000 4.53 0.00 40.84 2.93
18 19 0.252193 CCCCTCAAATGGGCCTCAAA 60.252 55.000 4.53 0.00 45.78 2.69
19 20 1.387737 CCCCTCAAATGGGCCTCAA 59.612 57.895 4.53 0.00 45.78 3.02
20 21 3.099171 CCCCTCAAATGGGCCTCA 58.901 61.111 4.53 0.00 45.78 3.86
26 27 3.048600 TCTAGATGGACCCCTCAAATGG 58.951 50.000 0.00 0.00 0.00 3.16
27 28 4.263243 GGATCTAGATGGACCCCTCAAATG 60.263 50.000 10.74 0.00 0.00 2.32
28 29 3.913163 GGATCTAGATGGACCCCTCAAAT 59.087 47.826 10.74 0.00 0.00 2.32
29 30 3.311327 TGGATCTAGATGGACCCCTCAAA 60.311 47.826 10.74 0.00 0.00 2.69
30 31 2.250008 TGGATCTAGATGGACCCCTCAA 59.750 50.000 10.74 0.00 0.00 3.02
31 32 1.866269 TGGATCTAGATGGACCCCTCA 59.134 52.381 10.74 0.00 0.00 3.86
32 33 2.704190 TGGATCTAGATGGACCCCTC 57.296 55.000 10.74 0.00 0.00 4.30
33 34 3.438131 TTTGGATCTAGATGGACCCCT 57.562 47.619 10.74 0.00 0.00 4.79
34 35 4.731313 AATTTGGATCTAGATGGACCCC 57.269 45.455 10.74 5.19 0.00 4.95
35 36 4.757149 CGAAATTTGGATCTAGATGGACCC 59.243 45.833 10.74 5.58 0.00 4.46
36 37 5.237344 CACGAAATTTGGATCTAGATGGACC 59.763 44.000 10.74 5.97 0.00 4.46
37 38 6.018669 GTCACGAAATTTGGATCTAGATGGAC 60.019 42.308 10.74 0.83 0.00 4.02
38 39 6.049149 GTCACGAAATTTGGATCTAGATGGA 58.951 40.000 10.74 0.00 0.00 3.41
39 40 5.237344 GGTCACGAAATTTGGATCTAGATGG 59.763 44.000 10.74 0.00 0.00 3.51
40 41 5.050769 CGGTCACGAAATTTGGATCTAGATG 60.051 44.000 10.74 0.00 44.60 2.90
41 42 5.050490 CGGTCACGAAATTTGGATCTAGAT 58.950 41.667 4.47 4.47 44.60 1.98
42 43 4.430007 CGGTCACGAAATTTGGATCTAGA 58.570 43.478 7.24 0.00 44.60 2.43
43 44 3.555956 CCGGTCACGAAATTTGGATCTAG 59.444 47.826 7.24 0.00 44.60 2.43
44 45 3.196039 TCCGGTCACGAAATTTGGATCTA 59.804 43.478 7.24 0.00 44.60 1.98
45 46 2.027561 TCCGGTCACGAAATTTGGATCT 60.028 45.455 7.24 0.00 44.60 2.75
46 47 2.095372 GTCCGGTCACGAAATTTGGATC 59.905 50.000 7.24 0.00 44.60 3.36
47 48 2.081462 GTCCGGTCACGAAATTTGGAT 58.919 47.619 7.24 0.00 44.60 3.41
48 49 1.202663 TGTCCGGTCACGAAATTTGGA 60.203 47.619 7.24 0.00 44.60 3.53
49 50 1.196808 CTGTCCGGTCACGAAATTTGG 59.803 52.381 0.00 0.00 44.60 3.28
50 51 1.399727 GCTGTCCGGTCACGAAATTTG 60.400 52.381 0.00 0.00 44.60 2.32
51 52 0.872388 GCTGTCCGGTCACGAAATTT 59.128 50.000 0.00 0.00 44.60 1.82
52 53 1.289109 CGCTGTCCGGTCACGAAATT 61.289 55.000 14.69 0.00 44.60 1.82
53 54 1.736645 CGCTGTCCGGTCACGAAAT 60.737 57.895 14.69 0.00 44.60 2.17
54 55 2.355363 CGCTGTCCGGTCACGAAA 60.355 61.111 14.69 0.00 44.60 3.46
55 56 3.289062 TCGCTGTCCGGTCACGAA 61.289 61.111 18.13 7.39 44.60 3.85
56 57 4.034258 GTCGCTGTCCGGTCACGA 62.034 66.667 17.11 17.11 44.60 4.35
76 77 4.778143 ATGTTCGGGCAGGCCGTC 62.778 66.667 32.63 25.41 36.85 4.79
77 78 2.472414 TAAATGTTCGGGCAGGCCGT 62.472 55.000 32.63 16.47 36.85 5.68
78 79 1.309499 TTAAATGTTCGGGCAGGCCG 61.309 55.000 29.26 29.26 36.85 6.13
79 80 0.455815 CTTAAATGTTCGGGCAGGCC 59.544 55.000 1.81 1.81 0.00 5.19
80 81 1.132453 GTCTTAAATGTTCGGGCAGGC 59.868 52.381 0.00 0.00 0.00 4.85
81 82 1.396996 CGTCTTAAATGTTCGGGCAGG 59.603 52.381 0.00 0.00 0.00 4.85
82 83 1.396996 CCGTCTTAAATGTTCGGGCAG 59.603 52.381 0.00 0.00 37.92 4.85
83 84 1.444836 CCGTCTTAAATGTTCGGGCA 58.555 50.000 0.00 0.00 37.92 5.36
86 87 5.391203 CCTTAAACCCGTCTTAAATGTTCGG 60.391 44.000 0.00 0.00 40.72 4.30
87 88 5.624292 CCTTAAACCCGTCTTAAATGTTCG 58.376 41.667 0.00 0.00 0.00 3.95
88 89 5.396484 GCCTTAAACCCGTCTTAAATGTTC 58.604 41.667 0.00 0.00 0.00 3.18
89 90 4.083164 CGCCTTAAACCCGTCTTAAATGTT 60.083 41.667 0.00 0.00 0.00 2.71
90 91 3.437741 CGCCTTAAACCCGTCTTAAATGT 59.562 43.478 0.00 0.00 0.00 2.71
91 92 3.437741 ACGCCTTAAACCCGTCTTAAATG 59.562 43.478 0.00 0.00 0.00 2.32
92 93 3.678289 ACGCCTTAAACCCGTCTTAAAT 58.322 40.909 0.00 0.00 0.00 1.40
93 94 3.066380 GACGCCTTAAACCCGTCTTAAA 58.934 45.455 12.32 0.00 45.56 1.52
94 95 2.687370 GACGCCTTAAACCCGTCTTAA 58.313 47.619 12.32 0.00 45.56 1.85
95 96 2.368655 GACGCCTTAAACCCGTCTTA 57.631 50.000 12.32 0.00 45.56 2.10
96 97 3.222053 GACGCCTTAAACCCGTCTT 57.778 52.632 12.32 0.00 45.56 3.01
99 100 1.891722 ATCGGACGCCTTAAACCCGT 61.892 55.000 0.00 0.00 40.87 5.28
100 101 0.741927 AATCGGACGCCTTAAACCCG 60.742 55.000 0.00 0.00 41.36 5.28
101 102 0.730840 CAATCGGACGCCTTAAACCC 59.269 55.000 0.00 0.00 0.00 4.11
102 103 1.445871 ACAATCGGACGCCTTAAACC 58.554 50.000 0.00 0.00 0.00 3.27
103 104 3.514645 TCTACAATCGGACGCCTTAAAC 58.485 45.455 0.00 0.00 0.00 2.01
104 105 3.872511 TCTACAATCGGACGCCTTAAA 57.127 42.857 0.00 0.00 0.00 1.52
105 106 3.713288 CATCTACAATCGGACGCCTTAA 58.287 45.455 0.00 0.00 0.00 1.85
106 107 2.545113 GCATCTACAATCGGACGCCTTA 60.545 50.000 0.00 0.00 0.00 2.69
107 108 1.806623 GCATCTACAATCGGACGCCTT 60.807 52.381 0.00 0.00 0.00 4.35
108 109 0.249489 GCATCTACAATCGGACGCCT 60.249 55.000 0.00 0.00 0.00 5.52
109 110 0.249489 AGCATCTACAATCGGACGCC 60.249 55.000 0.00 0.00 0.00 5.68
110 111 1.132588 GAGCATCTACAATCGGACGC 58.867 55.000 0.00 0.00 0.00 5.19
123 124 8.660373 GCATGTATAACCTGTATTTAGAGCATC 58.340 37.037 0.00 0.00 0.00 3.91
124 125 8.156820 TGCATGTATAACCTGTATTTAGAGCAT 58.843 33.333 0.00 0.00 0.00 3.79
125 126 7.441157 GTGCATGTATAACCTGTATTTAGAGCA 59.559 37.037 0.00 0.00 0.00 4.26
126 127 7.359264 CGTGCATGTATAACCTGTATTTAGAGC 60.359 40.741 0.00 0.00 0.00 4.09
127 128 7.652105 ACGTGCATGTATAACCTGTATTTAGAG 59.348 37.037 10.57 0.00 0.00 2.43
128 129 7.494211 ACGTGCATGTATAACCTGTATTTAGA 58.506 34.615 10.57 0.00 0.00 2.10
129 130 7.709269 ACGTGCATGTATAACCTGTATTTAG 57.291 36.000 10.57 0.00 0.00 1.85
130 131 9.767228 ATTACGTGCATGTATAACCTGTATTTA 57.233 29.630 19.17 0.44 0.00 1.40
131 132 8.671384 ATTACGTGCATGTATAACCTGTATTT 57.329 30.769 19.17 0.00 0.00 1.40
132 133 8.671384 AATTACGTGCATGTATAACCTGTATT 57.329 30.769 19.17 10.36 0.00 1.89
133 134 8.671384 AAATTACGTGCATGTATAACCTGTAT 57.329 30.769 19.17 4.87 0.00 2.29
134 135 9.597170 TTAAATTACGTGCATGTATAACCTGTA 57.403 29.630 19.17 2.60 0.00 2.74
135 136 6.995511 AAATTACGTGCATGTATAACCTGT 57.004 33.333 19.17 0.00 0.00 4.00
136 137 9.776158 TTTTAAATTACGTGCATGTATAACCTG 57.224 29.630 19.17 0.00 0.00 4.00
145 146 9.950858 CCTTTGTATTTTTAAATTACGTGCATG 57.049 29.630 3.82 3.82 0.00 4.06
146 147 8.652463 GCCTTTGTATTTTTAAATTACGTGCAT 58.348 29.630 0.00 0.00 0.00 3.96
147 148 7.868415 AGCCTTTGTATTTTTAAATTACGTGCA 59.132 29.630 0.00 0.00 0.00 4.57
148 149 8.234887 AGCCTTTGTATTTTTAAATTACGTGC 57.765 30.769 0.00 5.49 0.00 5.34
150 151 9.752961 ACAAGCCTTTGTATTTTTAAATTACGT 57.247 25.926 0.00 0.00 45.45 3.57
163 164 9.054969 GTGTATGCACGATACAAGCCTTTGTAT 62.055 40.741 10.26 10.26 46.88 2.29
164 165 7.827015 GTGTATGCACGATACAAGCCTTTGTA 61.827 42.308 0.00 1.47 46.88 2.41
165 166 7.096424 GTGTATGCACGATACAAGCCTTTGT 62.096 44.000 0.00 0.00 46.88 2.83
166 167 3.373748 TGTATGCACGATACAAGCCTTTG 59.626 43.478 0.00 0.00 43.34 2.77
167 168 3.374058 GTGTATGCACGATACAAGCCTTT 59.626 43.478 0.00 0.00 46.88 3.11
168 169 2.936498 GTGTATGCACGATACAAGCCTT 59.064 45.455 0.00 0.00 46.88 4.35
169 170 2.168521 AGTGTATGCACGATACAAGCCT 59.831 45.455 8.36 0.00 46.88 4.58
170 171 2.550978 AGTGTATGCACGATACAAGCC 58.449 47.619 8.36 0.00 46.88 4.35
171 172 5.387444 CGATTAGTGTATGCACGATACAAGC 60.387 44.000 8.36 1.85 46.88 4.01
172 173 5.117135 CCGATTAGTGTATGCACGATACAAG 59.883 44.000 8.36 0.00 46.88 3.16
173 174 4.979815 CCGATTAGTGTATGCACGATACAA 59.020 41.667 8.36 0.25 46.88 2.41
180 181 0.232303 GCGCCGATTAGTGTATGCAC 59.768 55.000 5.71 5.71 45.57 4.57
181 182 0.104120 AGCGCCGATTAGTGTATGCA 59.896 50.000 2.29 0.00 0.00 3.96
182 183 0.508641 CAGCGCCGATTAGTGTATGC 59.491 55.000 2.29 0.00 0.00 3.14
183 184 1.852942 ACAGCGCCGATTAGTGTATG 58.147 50.000 2.29 0.00 0.00 2.39
184 185 2.596904 AACAGCGCCGATTAGTGTAT 57.403 45.000 2.29 0.00 0.00 2.29
185 186 3.720949 ATAACAGCGCCGATTAGTGTA 57.279 42.857 2.29 0.00 0.00 2.90
186 187 2.596904 ATAACAGCGCCGATTAGTGT 57.403 45.000 2.29 0.00 0.00 3.55
187 188 3.377439 TGTATAACAGCGCCGATTAGTG 58.623 45.455 2.29 0.00 0.00 2.74
188 189 3.317149 TCTGTATAACAGCGCCGATTAGT 59.683 43.478 2.29 0.00 45.54 2.24
189 190 3.669122 GTCTGTATAACAGCGCCGATTAG 59.331 47.826 2.29 0.00 45.54 1.73
190 191 3.635331 GTCTGTATAACAGCGCCGATTA 58.365 45.455 2.29 0.13 45.54 1.75
191 192 2.470821 GTCTGTATAACAGCGCCGATT 58.529 47.619 2.29 0.00 45.54 3.34
192 193 1.599667 CGTCTGTATAACAGCGCCGAT 60.600 52.381 2.29 0.00 45.54 4.18
193 194 0.248336 CGTCTGTATAACAGCGCCGA 60.248 55.000 2.29 0.00 45.54 5.54
194 195 0.248336 TCGTCTGTATAACAGCGCCG 60.248 55.000 2.29 0.00 45.54 6.46
195 196 1.197910 GTCGTCTGTATAACAGCGCC 58.802 55.000 2.29 4.82 45.54 6.53
196 197 1.904144 TGTCGTCTGTATAACAGCGC 58.096 50.000 0.00 0.00 45.54 5.92
197 198 5.565638 CAGATATGTCGTCTGTATAACAGCG 59.434 44.000 13.80 13.80 45.54 5.18
198 199 6.919687 CAGATATGTCGTCTGTATAACAGC 57.080 41.667 2.12 0.00 45.54 4.40
207 208 2.099756 TCAGCCACAGATATGTCGTCTG 59.900 50.000 0.00 0.00 46.60 3.51
208 209 2.099921 GTCAGCCACAGATATGTCGTCT 59.900 50.000 0.00 0.00 0.00 4.18
209 210 2.099921 AGTCAGCCACAGATATGTCGTC 59.900 50.000 0.00 0.00 0.00 4.20
210 211 2.099921 GAGTCAGCCACAGATATGTCGT 59.900 50.000 0.00 0.00 0.00 4.34
211 212 2.360483 AGAGTCAGCCACAGATATGTCG 59.640 50.000 0.00 0.00 0.00 4.35
212 213 4.118410 CAAGAGTCAGCCACAGATATGTC 58.882 47.826 0.00 0.00 0.00 3.06
213 214 3.681034 GCAAGAGTCAGCCACAGATATGT 60.681 47.826 0.00 0.00 0.00 2.29
214 215 2.871022 GCAAGAGTCAGCCACAGATATG 59.129 50.000 0.00 0.00 0.00 1.78
215 216 2.502947 TGCAAGAGTCAGCCACAGATAT 59.497 45.455 5.30 0.00 0.00 1.63
216 217 1.901833 TGCAAGAGTCAGCCACAGATA 59.098 47.619 5.30 0.00 0.00 1.98
217 218 0.689055 TGCAAGAGTCAGCCACAGAT 59.311 50.000 5.30 0.00 0.00 2.90
218 219 0.250038 GTGCAAGAGTCAGCCACAGA 60.250 55.000 5.30 0.00 0.00 3.41
219 220 1.563435 CGTGCAAGAGTCAGCCACAG 61.563 60.000 0.00 0.00 0.00 3.66
220 221 1.595109 CGTGCAAGAGTCAGCCACA 60.595 57.895 0.00 0.00 0.00 4.17
221 222 0.671781 ATCGTGCAAGAGTCAGCCAC 60.672 55.000 8.63 1.96 0.00 5.01
222 223 0.390340 GATCGTGCAAGAGTCAGCCA 60.390 55.000 8.63 0.00 0.00 4.75
223 224 0.108424 AGATCGTGCAAGAGTCAGCC 60.108 55.000 8.63 0.00 0.00 4.85
224 225 1.719600 AAGATCGTGCAAGAGTCAGC 58.280 50.000 8.63 0.00 0.00 4.26
225 226 4.103365 AGTAAGATCGTGCAAGAGTCAG 57.897 45.455 8.63 0.00 0.00 3.51
226 227 4.237724 CAAGTAAGATCGTGCAAGAGTCA 58.762 43.478 8.63 0.00 0.00 3.41
227 228 3.614616 CCAAGTAAGATCGTGCAAGAGTC 59.385 47.826 8.63 6.28 0.00 3.36
228 229 3.589988 CCAAGTAAGATCGTGCAAGAGT 58.410 45.455 8.63 0.00 0.00 3.24
229 230 2.349886 GCCAAGTAAGATCGTGCAAGAG 59.650 50.000 8.63 0.00 0.00 2.85
230 231 2.289382 TGCCAAGTAAGATCGTGCAAGA 60.289 45.455 4.40 4.40 0.00 3.02
231 232 2.076100 TGCCAAGTAAGATCGTGCAAG 58.924 47.619 0.00 0.00 0.00 4.01
232 233 2.076100 CTGCCAAGTAAGATCGTGCAA 58.924 47.619 0.00 0.00 0.00 4.08
233 234 1.725641 CTGCCAAGTAAGATCGTGCA 58.274 50.000 0.00 0.00 0.00 4.57
234 235 0.375106 GCTGCCAAGTAAGATCGTGC 59.625 55.000 0.00 0.00 0.00 5.34
235 236 1.662629 CAGCTGCCAAGTAAGATCGTG 59.337 52.381 0.00 0.00 0.00 4.35
236 237 2.009042 GCAGCTGCCAAGTAAGATCGT 61.009 52.381 28.76 0.00 34.31 3.73
237 238 0.654683 GCAGCTGCCAAGTAAGATCG 59.345 55.000 28.76 0.00 34.31 3.69
249 250 4.395583 GCGTTCACAGGCAGCTGC 62.396 66.667 30.88 30.88 41.14 5.25
250 251 2.974148 TGCGTTCACAGGCAGCTG 60.974 61.111 10.11 10.11 38.89 4.24
257 258 0.877071 ATTGCTTCCTGCGTTCACAG 59.123 50.000 0.00 0.00 46.63 3.66
258 259 1.001487 CAATTGCTTCCTGCGTTCACA 60.001 47.619 0.00 0.00 46.63 3.58
259 260 1.001378 ACAATTGCTTCCTGCGTTCAC 60.001 47.619 5.05 0.00 46.63 3.18
260 261 1.317613 ACAATTGCTTCCTGCGTTCA 58.682 45.000 5.05 0.00 46.63 3.18
261 262 2.422276 AACAATTGCTTCCTGCGTTC 57.578 45.000 5.05 0.00 46.63 3.95
262 263 2.888834 AAACAATTGCTTCCTGCGTT 57.111 40.000 5.05 0.00 46.63 4.84
263 264 2.888834 AAAACAATTGCTTCCTGCGT 57.111 40.000 5.05 0.00 46.63 5.24
290 291 2.892425 AACCGCGCTAGCATCAGC 60.892 61.111 16.45 8.92 45.49 4.26
291 292 2.528743 CCAACCGCGCTAGCATCAG 61.529 63.158 16.45 2.42 45.49 2.90
292 293 2.511373 CCAACCGCGCTAGCATCA 60.511 61.111 16.45 0.00 45.49 3.07
293 294 3.272334 CCCAACCGCGCTAGCATC 61.272 66.667 16.45 4.66 45.49 3.91
294 295 4.856801 CCCCAACCGCGCTAGCAT 62.857 66.667 16.45 0.00 45.49 3.79
302 303 3.365265 CACTTGCTCCCCAACCGC 61.365 66.667 0.00 0.00 0.00 5.68
303 304 1.966451 GACACTTGCTCCCCAACCG 60.966 63.158 0.00 0.00 0.00 4.44
304 305 1.966451 CGACACTTGCTCCCCAACC 60.966 63.158 0.00 0.00 0.00 3.77
305 306 0.818040 AACGACACTTGCTCCCCAAC 60.818 55.000 0.00 0.00 0.00 3.77
306 307 0.106918 AAACGACACTTGCTCCCCAA 60.107 50.000 0.00 0.00 0.00 4.12
307 308 0.817634 CAAACGACACTTGCTCCCCA 60.818 55.000 0.00 0.00 0.00 4.96
308 309 1.949257 CAAACGACACTTGCTCCCC 59.051 57.895 0.00 0.00 0.00 4.81
309 310 1.282875 GCAAACGACACTTGCTCCC 59.717 57.895 0.00 0.00 44.66 4.30
310 311 4.922791 GCAAACGACACTTGCTCC 57.077 55.556 0.00 0.00 44.66 4.70
314 315 1.526887 ACGATCAGCAAACGACACTTG 59.473 47.619 0.00 0.00 0.00 3.16
315 316 1.526887 CACGATCAGCAAACGACACTT 59.473 47.619 0.00 0.00 0.00 3.16
316 317 1.139989 CACGATCAGCAAACGACACT 58.860 50.000 0.00 0.00 0.00 3.55
317 318 0.451135 GCACGATCAGCAAACGACAC 60.451 55.000 2.49 0.00 0.00 3.67
318 319 0.878086 TGCACGATCAGCAAACGACA 60.878 50.000 7.32 0.00 39.39 4.35
319 320 0.443869 ATGCACGATCAGCAAACGAC 59.556 50.000 13.09 0.00 46.27 4.34
320 321 0.721154 GATGCACGATCAGCAAACGA 59.279 50.000 13.09 0.00 46.27 3.85
321 322 0.443478 TGATGCACGATCAGCAAACG 59.557 50.000 13.09 0.00 46.27 3.60
322 323 2.095567 ACTTGATGCACGATCAGCAAAC 60.096 45.455 13.09 10.83 46.27 2.93
323 324 2.095617 CACTTGATGCACGATCAGCAAA 60.096 45.455 13.09 4.48 46.27 3.68
324 325 1.465777 CACTTGATGCACGATCAGCAA 59.534 47.619 13.09 10.65 46.27 3.91
326 327 1.061711 GACACTTGATGCACGATCAGC 59.938 52.381 0.00 0.39 42.24 4.26
327 328 1.322637 CGACACTTGATGCACGATCAG 59.677 52.381 0.00 0.00 42.24 2.90
328 329 1.336795 ACGACACTTGATGCACGATCA 60.337 47.619 0.00 0.00 39.47 2.92
329 330 1.059692 CACGACACTTGATGCACGATC 59.940 52.381 0.00 0.00 35.99 3.69
330 331 1.070821 CACGACACTTGATGCACGAT 58.929 50.000 0.00 0.00 35.99 3.73
331 332 0.249280 ACACGACACTTGATGCACGA 60.249 50.000 0.00 0.00 35.99 4.35
332 333 0.111134 CACACGACACTTGATGCACG 60.111 55.000 0.00 0.00 37.41 5.34
333 334 0.937304 ACACACGACACTTGATGCAC 59.063 50.000 0.00 0.00 0.00 4.57
334 335 0.936600 CACACACGACACTTGATGCA 59.063 50.000 0.00 0.00 0.00 3.96
335 336 1.217001 TCACACACGACACTTGATGC 58.783 50.000 0.00 0.00 0.00 3.91
336 337 2.348872 GCTTCACACACGACACTTGATG 60.349 50.000 0.00 0.00 0.00 3.07
337 338 1.867233 GCTTCACACACGACACTTGAT 59.133 47.619 0.00 0.00 0.00 2.57
338 339 1.286501 GCTTCACACACGACACTTGA 58.713 50.000 0.00 0.00 0.00 3.02
339 340 1.006086 TGCTTCACACACGACACTTG 58.994 50.000 0.00 0.00 0.00 3.16
340 341 1.732941 TTGCTTCACACACGACACTT 58.267 45.000 0.00 0.00 0.00 3.16
341 342 1.953559 ATTGCTTCACACACGACACT 58.046 45.000 0.00 0.00 0.00 3.55
342 343 2.755836 AATTGCTTCACACACGACAC 57.244 45.000 0.00 0.00 0.00 3.67
343 344 2.286125 CGAAATTGCTTCACACACGACA 60.286 45.455 0.00 0.00 33.17 4.35
344 345 2.286184 ACGAAATTGCTTCACACACGAC 60.286 45.455 0.00 0.00 33.17 4.34
345 346 1.937223 ACGAAATTGCTTCACACACGA 59.063 42.857 0.00 0.00 33.17 4.35
346 347 2.383298 ACGAAATTGCTTCACACACG 57.617 45.000 0.00 0.00 33.17 4.49
347 348 3.966218 GTGTACGAAATTGCTTCACACAC 59.034 43.478 0.00 0.00 39.26 3.82
348 349 3.874543 AGTGTACGAAATTGCTTCACACA 59.125 39.130 12.13 0.00 40.73 3.72
349 350 4.468095 AGTGTACGAAATTGCTTCACAC 57.532 40.909 0.00 4.64 39.53 3.82
350 351 6.795098 ATTAGTGTACGAAATTGCTTCACA 57.205 33.333 0.00 0.00 33.17 3.58
351 352 7.295201 TCAATTAGTGTACGAAATTGCTTCAC 58.705 34.615 16.56 0.00 39.39 3.18
352 353 7.428282 TCAATTAGTGTACGAAATTGCTTCA 57.572 32.000 16.56 3.88 39.39 3.02
353 354 8.175069 TCATCAATTAGTGTACGAAATTGCTTC 58.825 33.333 16.56 0.00 39.39 3.86
354 355 8.039603 TCATCAATTAGTGTACGAAATTGCTT 57.960 30.769 16.56 8.47 39.39 3.91
355 356 7.609760 TCATCAATTAGTGTACGAAATTGCT 57.390 32.000 16.56 8.98 39.39 3.91
356 357 8.841444 ATTCATCAATTAGTGTACGAAATTGC 57.159 30.769 16.56 0.00 39.39 3.56
358 359 9.787532 CCAATTCATCAATTAGTGTACGAAATT 57.212 29.630 0.00 0.00 30.51 1.82
359 360 8.956426 ACCAATTCATCAATTAGTGTACGAAAT 58.044 29.630 0.00 0.00 30.51 2.17
360 361 8.330466 ACCAATTCATCAATTAGTGTACGAAA 57.670 30.769 0.00 0.00 30.51 3.46
361 362 7.915293 ACCAATTCATCAATTAGTGTACGAA 57.085 32.000 0.00 0.00 30.51 3.85
362 363 7.201487 CGAACCAATTCATCAATTAGTGTACGA 60.201 37.037 0.00 0.00 34.14 3.43
363 364 6.899771 CGAACCAATTCATCAATTAGTGTACG 59.100 38.462 0.00 0.00 34.14 3.67
364 365 6.687105 GCGAACCAATTCATCAATTAGTGTAC 59.313 38.462 0.00 0.00 34.14 2.90
375 376 4.355543 TTGCTAAGCGAACCAATTCATC 57.644 40.909 0.00 0.00 34.14 2.92
378 379 2.854185 GCATTGCTAAGCGAACCAATTC 59.146 45.455 0.16 0.00 0.00 2.17
379 380 2.230992 TGCATTGCTAAGCGAACCAATT 59.769 40.909 10.49 0.00 0.00 2.32
402 403 1.457346 GACAGCTAGCTTTGCCATGT 58.543 50.000 16.46 9.03 0.00 3.21
458 459 1.071385 ACTGTTAGCTGCAGCAAGACT 59.929 47.619 38.24 21.12 45.16 3.24
506 515 1.215647 GCTCCTGACACCGAATCGT 59.784 57.895 0.82 0.00 0.00 3.73
517 526 2.290287 TAAAGGCGGCAGCTCCTGA 61.290 57.895 13.08 0.00 44.37 3.86
539 548 2.045708 CAAAGCACCTGCCGCCATA 61.046 57.895 0.00 0.00 43.38 2.74
577 586 1.770294 AAAACCCTCAAAAGACGGCA 58.230 45.000 0.00 0.00 0.00 5.69
678 728 2.502510 CGTACGGTGGGACGAACG 60.503 66.667 7.57 0.00 41.60 3.95
701 752 2.403037 GTCGTCTAGTTTTCGTCCAACG 59.597 50.000 0.00 0.00 44.19 4.10
716 767 2.541178 GCTAATGGATTCGTCGTCGTCT 60.541 50.000 1.33 0.00 38.33 4.18
725 776 0.304705 GTGGCACGCTAATGGATTCG 59.695 55.000 0.00 0.00 35.02 3.34
735 786 3.119193 CCAAAACTGTGGCACGCT 58.881 55.556 13.77 0.00 40.97 5.07
750 801 4.136796 GACATATGTAATCAAGCCAGCCA 58.863 43.478 8.71 0.00 0.00 4.75
765 831 1.327460 CCGGTTCTTGCACGACATATG 59.673 52.381 0.00 0.00 0.00 1.78
766 832 1.651987 CCGGTTCTTGCACGACATAT 58.348 50.000 0.00 0.00 0.00 1.78
767 833 1.017177 GCCGGTTCTTGCACGACATA 61.017 55.000 1.90 0.00 0.00 2.29
768 834 2.325082 GCCGGTTCTTGCACGACAT 61.325 57.895 1.90 0.00 0.00 3.06
782 848 1.006102 GACGATAGATGGTGGCCGG 60.006 63.158 0.00 0.00 41.38 6.13
788 854 1.202582 GCTATGCGGACGATAGATGGT 59.797 52.381 12.21 0.00 41.38 3.55
828 894 2.419198 GAGGAGACGGCATGCGAT 59.581 61.111 12.44 0.99 0.00 4.58
829 895 3.838271 GGAGGAGACGGCATGCGA 61.838 66.667 12.44 0.00 0.00 5.10
830 896 3.781770 GAGGAGGAGACGGCATGCG 62.782 68.421 12.44 9.76 0.00 4.73
831 897 2.107953 GAGGAGGAGACGGCATGC 59.892 66.667 9.90 9.90 0.00 4.06
832 898 2.818132 GGAGGAGGAGACGGCATG 59.182 66.667 0.00 0.00 0.00 4.06
836 902 3.203412 CGACGGAGGAGGAGACGG 61.203 72.222 0.00 0.00 0.00 4.79
899 970 4.278956 CGAAGGTTCGTGGAAGGG 57.721 61.111 3.91 0.00 45.09 3.95
1025 1104 1.410517 ACGAGTGTGGAGCTATGGATG 59.589 52.381 0.00 0.00 0.00 3.51
1520 2025 2.266055 GGACTCTGCTGGAACCCG 59.734 66.667 0.00 0.00 0.00 5.28
1656 2161 1.084289 GAAAACATCGCCGGCTTAGT 58.916 50.000 26.68 16.61 0.00 2.24
1657 2162 0.377203 GGAAAACATCGCCGGCTTAG 59.623 55.000 26.68 15.90 0.00 2.18
1658 2163 1.363145 CGGAAAACATCGCCGGCTTA 61.363 55.000 26.68 13.37 41.29 3.09
1926 2445 3.827898 CTCCGCCTCCAGGTCGTC 61.828 72.222 8.13 0.00 37.57 4.20
2021 2540 2.201921 TGCACTTCTCGTACTCCTCT 57.798 50.000 0.00 0.00 0.00 3.69
3203 3722 3.817508 AGCAGCCACTGGTGATCT 58.182 55.556 1.93 0.00 40.87 2.75
3270 3792 4.457603 ACTTCTAGGCTAGCTATCATCGTG 59.542 45.833 16.85 0.18 0.00 4.35
3309 3831 4.517285 TGGATGGATCTCTGTTGCTAAAC 58.483 43.478 0.00 0.00 36.78 2.01
3310 3832 4.842531 TGGATGGATCTCTGTTGCTAAA 57.157 40.909 0.00 0.00 0.00 1.85
3326 3848 2.362736 CAGTCCACTGAACCATGGATG 58.637 52.381 21.47 8.13 46.55 3.51
3327 3849 1.340405 GCAGTCCACTGAACCATGGAT 60.340 52.381 21.47 6.44 46.55 3.41
3328 3850 0.036732 GCAGTCCACTGAACCATGGA 59.963 55.000 21.47 0.00 46.59 3.41
3329 3851 0.962356 GGCAGTCCACTGAACCATGG 60.962 60.000 11.19 11.19 46.59 3.66
3330 3852 1.300971 CGGCAGTCCACTGAACCATG 61.301 60.000 11.04 0.00 46.59 3.66
3391 3950 9.072294 CCATTTTTATGACAAGTATTTTCGGAC 57.928 33.333 0.00 0.00 0.00 4.79
3393 3952 9.801873 ATCCATTTTTATGACAAGTATTTTCGG 57.198 29.630 0.00 0.00 0.00 4.30
3406 3965 9.730705 TGCAACCATTTTTATCCATTTTTATGA 57.269 25.926 0.00 0.00 0.00 2.15
3409 3968 9.512588 ACATGCAACCATTTTTATCCATTTTTA 57.487 25.926 0.00 0.00 0.00 1.52
3412 3971 9.512588 TTTACATGCAACCATTTTTATCCATTT 57.487 25.926 0.00 0.00 0.00 2.32
3413 3972 9.512588 TTTTACATGCAACCATTTTTATCCATT 57.487 25.926 0.00 0.00 0.00 3.16
3414 3973 8.945057 GTTTTACATGCAACCATTTTTATCCAT 58.055 29.630 0.00 0.00 0.00 3.41
3415 3974 8.153550 AGTTTTACATGCAACCATTTTTATCCA 58.846 29.630 0.00 0.00 0.00 3.41
3416 3975 8.546597 AGTTTTACATGCAACCATTTTTATCC 57.453 30.769 0.00 0.00 0.00 2.59
3425 3984 9.685828 GAAGTATTTTAGTTTTACATGCAACCA 57.314 29.630 0.00 0.00 0.00 3.67
3426 3985 9.908152 AGAAGTATTTTAGTTTTACATGCAACC 57.092 29.630 0.00 0.00 0.00 3.77
3446 4005 8.963725 TCGAAGAAATGGTTGTATCTAGAAGTA 58.036 33.333 0.00 0.00 0.00 2.24
3448 4007 7.976734 AGTCGAAGAAATGGTTGTATCTAGAAG 59.023 37.037 0.00 0.00 39.69 2.85
3450 4009 7.406031 AGTCGAAGAAATGGTTGTATCTAGA 57.594 36.000 0.00 0.00 39.69 2.43
3451 4010 8.407064 ACTAGTCGAAGAAATGGTTGTATCTAG 58.593 37.037 0.00 0.00 39.69 2.43
3455 4014 9.886132 AAATACTAGTCGAAGAAATGGTTGTAT 57.114 29.630 0.00 0.00 39.69 2.29
3456 4015 9.715121 AAAATACTAGTCGAAGAAATGGTTGTA 57.285 29.630 0.00 0.00 39.69 2.41
3457 4016 8.617290 AAAATACTAGTCGAAGAAATGGTTGT 57.383 30.769 0.00 0.00 39.69 3.32
3458 4017 7.898309 CGAAAATACTAGTCGAAGAAATGGTTG 59.102 37.037 0.00 0.00 39.69 3.77
3459 4018 7.064253 CCGAAAATACTAGTCGAAGAAATGGTT 59.936 37.037 0.00 0.00 39.69 3.67
3460 4019 6.534079 CCGAAAATACTAGTCGAAGAAATGGT 59.466 38.462 0.00 0.00 39.69 3.55
3461 4020 6.755141 TCCGAAAATACTAGTCGAAGAAATGG 59.245 38.462 0.00 0.00 39.69 3.16
3462 4021 7.513196 CGTCCGAAAATACTAGTCGAAGAAATG 60.513 40.741 0.00 0.00 39.69 2.32
3465 4024 5.327091 CGTCCGAAAATACTAGTCGAAGAA 58.673 41.667 0.00 0.00 39.69 2.52
3467 4026 4.033684 CCGTCCGAAAATACTAGTCGAAG 58.966 47.826 0.00 0.00 36.92 3.79
3469 4028 3.270027 TCCGTCCGAAAATACTAGTCGA 58.730 45.455 0.00 0.00 36.92 4.20
3470 4029 3.547613 CCTCCGTCCGAAAATACTAGTCG 60.548 52.174 0.00 0.00 34.58 4.18
3471 4030 3.243334 CCCTCCGTCCGAAAATACTAGTC 60.243 52.174 0.00 0.00 0.00 2.59
3472 4031 2.692041 CCCTCCGTCCGAAAATACTAGT 59.308 50.000 0.00 0.00 0.00 2.57
3473 4032 2.954318 TCCCTCCGTCCGAAAATACTAG 59.046 50.000 0.00 0.00 0.00 2.57
3474 4033 2.954318 CTCCCTCCGTCCGAAAATACTA 59.046 50.000 0.00 0.00 0.00 1.82
3476 4035 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3477 4036 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3481 4040 0.549950 ATCTACTCCCTCCGTCCGAA 59.450 55.000 0.00 0.00 0.00 4.30
3487 4160 5.010933 TCTAATAAGCATCTACTCCCTCCG 58.989 45.833 0.00 0.00 0.00 4.63
3600 4282 6.751425 ACGGTTATTATTACGTGAATCGAACA 59.249 34.615 0.00 0.00 42.86 3.18
3801 4496 2.683212 AGCTCAGGCGAGGAAGCT 60.683 61.111 8.11 0.00 44.37 3.74
3920 4665 1.359848 GAAGTTCGATCGCACATGGT 58.640 50.000 19.74 2.20 0.00 3.55
3984 4729 1.028905 TTTGCTACAACTGGCCACAC 58.971 50.000 0.00 0.00 0.00 3.82
3992 4737 5.010922 TGGCTTCATGATTTTTGCTACAACT 59.989 36.000 0.00 0.00 0.00 3.16
4009 4754 2.106477 TTACATCGCACATGGCTTCA 57.894 45.000 0.00 0.00 41.67 3.02
4029 4774 3.685756 GCTACTACCGGTGTTGCATTTTA 59.314 43.478 25.81 3.15 36.48 1.52
4037 4782 3.928375 CGTATTTTGCTACTACCGGTGTT 59.072 43.478 19.93 6.13 0.00 3.32
4184 4930 3.918591 ACAGTTACATCTAACGTCGCTTG 59.081 43.478 0.00 0.00 37.85 4.01
4269 5015 5.180117 GGCTTCACGATTTGCTACATCATAT 59.820 40.000 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.