Multiple sequence alignment - TraesCS7B01G077100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G077100 chr7B 100.000 3179 0 0 1 3179 86808752 86805574 0.000000e+00 5871.0
1 TraesCS7B01G077100 chr7D 90.488 2376 125 45 815 3143 124877739 124875418 0.000000e+00 3042.0
2 TraesCS7B01G077100 chr7D 91.123 383 16 8 446 825 124878822 124878455 1.320000e-138 503.0
3 TraesCS7B01G077100 chr7A 88.634 2270 145 48 452 2658 127076580 127074361 0.000000e+00 2658.0
4 TraesCS7B01G077100 chr7A 89.560 546 24 11 2650 3179 127074336 127073808 0.000000e+00 662.0
5 TraesCS7B01G077100 chr7A 90.099 101 8 2 152 251 127076814 127076715 2.570000e-26 130.0
6 TraesCS7B01G077100 chr2B 100.000 36 0 0 3057 3092 184515457 184515422 2.050000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G077100 chr7B 86805574 86808752 3178 True 5871.0 5871 100.0000 1 3179 1 chr7B.!!$R1 3178
1 TraesCS7B01G077100 chr7D 124875418 124878822 3404 True 1772.5 3042 90.8055 446 3143 2 chr7D.!!$R1 2697
2 TraesCS7B01G077100 chr7A 127073808 127076814 3006 True 1150.0 2658 89.4310 152 3179 3 chr7A.!!$R1 3027

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.035152 TGAAGCATGAGCCATTCCGT 60.035 50.0 0.0 0.0 43.56 4.69 F
365 393 0.178990 AAGGACCTGCAACAACCTCC 60.179 55.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 2328 0.108186 CGCCTGCAGGACAAGACATA 60.108 55.0 37.21 0.0 37.39 2.29 R
2186 2993 0.463833 TGCATCATGCTCTGCTCAGG 60.464 55.0 11.84 0.0 45.31 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.495260 AGGAGAACCTTTATTCTATTTGTAGGG 58.505 37.037 0.00 0.00 45.36 3.53
35 36 8.491958 GGAGAACCTTTATTCTATTTGTAGGGA 58.508 37.037 0.00 0.00 39.08 4.20
36 37 9.549078 GAGAACCTTTATTCTATTTGTAGGGAG 57.451 37.037 0.00 0.00 39.08 4.30
37 38 7.993758 AGAACCTTTATTCTATTTGTAGGGAGC 59.006 37.037 0.00 0.00 37.16 4.70
38 39 6.602278 ACCTTTATTCTATTTGTAGGGAGCC 58.398 40.000 0.00 0.00 0.00 4.70
39 40 5.701290 CCTTTATTCTATTTGTAGGGAGCCG 59.299 44.000 0.00 0.00 0.00 5.52
40 41 2.614829 TTCTATTTGTAGGGAGCCGC 57.385 50.000 0.00 0.00 0.00 6.53
41 42 0.756903 TCTATTTGTAGGGAGCCGCC 59.243 55.000 0.00 0.00 0.00 6.13
42 43 0.600255 CTATTTGTAGGGAGCCGCCG 60.600 60.000 0.00 0.00 37.63 6.46
43 44 2.653953 TATTTGTAGGGAGCCGCCGC 62.654 60.000 0.00 0.00 37.63 6.53
59 60 3.706373 GCCACCTCGCCCTCTTGA 61.706 66.667 0.00 0.00 0.00 3.02
60 61 3.068881 CCACCTCGCCCTCTTGAA 58.931 61.111 0.00 0.00 0.00 2.69
61 62 1.376037 CCACCTCGCCCTCTTGAAC 60.376 63.158 0.00 0.00 0.00 3.18
62 63 1.371183 CACCTCGCCCTCTTGAACA 59.629 57.895 0.00 0.00 0.00 3.18
63 64 0.671781 CACCTCGCCCTCTTGAACAG 60.672 60.000 0.00 0.00 0.00 3.16
64 65 1.078848 CCTCGCCCTCTTGAACAGG 60.079 63.158 0.00 0.00 0.00 4.00
65 66 1.544825 CCTCGCCCTCTTGAACAGGA 61.545 60.000 0.00 0.00 31.91 3.86
66 67 0.539051 CTCGCCCTCTTGAACAGGAT 59.461 55.000 0.00 0.00 31.91 3.24
67 68 0.537188 TCGCCCTCTTGAACAGGATC 59.463 55.000 0.00 0.00 31.91 3.36
68 69 0.250234 CGCCCTCTTGAACAGGATCA 59.750 55.000 0.00 0.00 31.91 2.92
69 70 1.339055 CGCCCTCTTGAACAGGATCAA 60.339 52.381 0.00 0.00 37.70 2.57
70 71 2.795329 GCCCTCTTGAACAGGATCAAA 58.205 47.619 0.00 0.00 38.75 2.69
71 72 2.489722 GCCCTCTTGAACAGGATCAAAC 59.510 50.000 0.00 0.00 38.75 2.93
72 73 3.084786 CCCTCTTGAACAGGATCAAACC 58.915 50.000 0.00 0.00 38.75 3.27
73 74 3.245052 CCCTCTTGAACAGGATCAAACCT 60.245 47.826 0.00 0.00 38.75 3.50
74 75 4.019321 CCCTCTTGAACAGGATCAAACCTA 60.019 45.833 0.00 0.00 38.75 3.08
75 76 5.514834 CCCTCTTGAACAGGATCAAACCTAA 60.515 44.000 0.00 0.00 38.75 2.69
76 77 6.003950 CCTCTTGAACAGGATCAAACCTAAA 58.996 40.000 0.00 0.00 38.75 1.85
77 78 6.072452 CCTCTTGAACAGGATCAAACCTAAAC 60.072 42.308 0.00 0.00 38.75 2.01
78 79 6.361433 TCTTGAACAGGATCAAACCTAAACA 58.639 36.000 0.00 0.00 38.75 2.83
79 80 6.486657 TCTTGAACAGGATCAAACCTAAACAG 59.513 38.462 0.00 0.00 38.75 3.16
80 81 5.935945 TGAACAGGATCAAACCTAAACAGA 58.064 37.500 0.00 0.00 38.32 3.41
81 82 5.763204 TGAACAGGATCAAACCTAAACAGAC 59.237 40.000 0.00 0.00 38.32 3.51
82 83 5.568620 ACAGGATCAAACCTAAACAGACT 57.431 39.130 0.00 0.00 38.32 3.24
83 84 6.681729 ACAGGATCAAACCTAAACAGACTA 57.318 37.500 0.00 0.00 38.32 2.59
84 85 7.074653 ACAGGATCAAACCTAAACAGACTAA 57.925 36.000 0.00 0.00 38.32 2.24
85 86 7.514721 ACAGGATCAAACCTAAACAGACTAAA 58.485 34.615 0.00 0.00 38.32 1.85
86 87 7.661847 ACAGGATCAAACCTAAACAGACTAAAG 59.338 37.037 0.00 0.00 38.32 1.85
87 88 7.878127 CAGGATCAAACCTAAACAGACTAAAGA 59.122 37.037 0.00 0.00 38.32 2.52
88 89 8.437575 AGGATCAAACCTAAACAGACTAAAGAA 58.562 33.333 0.00 0.00 38.65 2.52
89 90 9.063615 GGATCAAACCTAAACAGACTAAAGAAA 57.936 33.333 0.00 0.00 0.00 2.52
90 91 9.880064 GATCAAACCTAAACAGACTAAAGAAAC 57.120 33.333 0.00 0.00 0.00 2.78
91 92 8.795842 TCAAACCTAAACAGACTAAAGAAACA 57.204 30.769 0.00 0.00 0.00 2.83
92 93 8.671028 TCAAACCTAAACAGACTAAAGAAACAC 58.329 33.333 0.00 0.00 0.00 3.32
93 94 7.563888 AACCTAAACAGACTAAAGAAACACC 57.436 36.000 0.00 0.00 0.00 4.16
94 95 6.896883 ACCTAAACAGACTAAAGAAACACCT 58.103 36.000 0.00 0.00 0.00 4.00
95 96 8.026396 ACCTAAACAGACTAAAGAAACACCTA 57.974 34.615 0.00 0.00 0.00 3.08
96 97 8.488668 ACCTAAACAGACTAAAGAAACACCTAA 58.511 33.333 0.00 0.00 0.00 2.69
97 98 9.333724 CCTAAACAGACTAAAGAAACACCTAAA 57.666 33.333 0.00 0.00 0.00 1.85
99 100 8.570068 AAACAGACTAAAGAAACACCTAAACA 57.430 30.769 0.00 0.00 0.00 2.83
100 101 8.747538 AACAGACTAAAGAAACACCTAAACAT 57.252 30.769 0.00 0.00 0.00 2.71
101 102 8.154649 ACAGACTAAAGAAACACCTAAACATG 57.845 34.615 0.00 0.00 0.00 3.21
102 103 7.990886 ACAGACTAAAGAAACACCTAAACATGA 59.009 33.333 0.00 0.00 0.00 3.07
103 104 8.836413 CAGACTAAAGAAACACCTAAACATGAA 58.164 33.333 0.00 0.00 0.00 2.57
104 105 9.057089 AGACTAAAGAAACACCTAAACATGAAG 57.943 33.333 0.00 0.00 0.00 3.02
105 106 7.649057 ACTAAAGAAACACCTAAACATGAAGC 58.351 34.615 0.00 0.00 0.00 3.86
106 107 6.463995 AAAGAAACACCTAAACATGAAGCA 57.536 33.333 0.00 0.00 0.00 3.91
107 108 6.655078 AAGAAACACCTAAACATGAAGCAT 57.345 33.333 0.00 0.00 0.00 3.79
108 109 6.017400 AGAAACACCTAAACATGAAGCATG 57.983 37.500 0.00 5.90 46.18 4.06
109 110 5.769662 AGAAACACCTAAACATGAAGCATGA 59.230 36.000 13.79 0.00 43.81 3.07
110 111 5.633830 AACACCTAAACATGAAGCATGAG 57.366 39.130 13.79 1.78 43.81 2.90
111 112 3.441572 ACACCTAAACATGAAGCATGAGC 59.558 43.478 13.79 0.00 43.81 4.26
112 113 3.019564 ACCTAAACATGAAGCATGAGCC 58.980 45.455 13.79 0.00 43.81 4.70
113 114 3.018856 CCTAAACATGAAGCATGAGCCA 58.981 45.455 13.79 0.00 43.81 4.75
114 115 3.635373 CCTAAACATGAAGCATGAGCCAT 59.365 43.478 13.79 0.00 43.81 4.40
115 116 4.098960 CCTAAACATGAAGCATGAGCCATT 59.901 41.667 13.79 4.24 43.81 3.16
116 117 3.795623 AACATGAAGCATGAGCCATTC 57.204 42.857 13.79 0.00 43.81 2.67
117 118 2.029623 ACATGAAGCATGAGCCATTCC 58.970 47.619 13.79 0.00 43.81 3.01
118 119 1.001706 CATGAAGCATGAGCCATTCCG 60.002 52.381 0.00 0.00 43.81 4.30
119 120 0.035152 TGAAGCATGAGCCATTCCGT 60.035 50.000 0.00 0.00 43.56 4.69
120 121 1.098050 GAAGCATGAGCCATTCCGTT 58.902 50.000 0.00 0.00 43.56 4.44
121 122 0.813184 AAGCATGAGCCATTCCGTTG 59.187 50.000 0.00 0.00 43.56 4.10
122 123 1.033746 AGCATGAGCCATTCCGTTGG 61.034 55.000 0.00 0.00 43.56 3.77
128 129 3.287445 CCATTCCGTTGGCAAGGG 58.713 61.111 28.50 28.50 37.77 3.95
129 130 2.350458 CCATTCCGTTGGCAAGGGG 61.350 63.158 31.95 21.61 37.06 4.79
130 131 1.606313 CATTCCGTTGGCAAGGGGT 60.606 57.895 31.95 20.97 37.06 4.95
131 132 1.155155 ATTCCGTTGGCAAGGGGTT 59.845 52.632 31.95 19.86 37.06 4.11
132 133 1.184970 ATTCCGTTGGCAAGGGGTTG 61.185 55.000 31.95 12.25 37.06 3.77
133 134 3.302344 CCGTTGGCAAGGGGTTGG 61.302 66.667 27.15 7.47 32.85 3.77
134 135 3.302344 CGTTGGCAAGGGGTTGGG 61.302 66.667 11.94 0.00 0.00 4.12
135 136 2.200092 GTTGGCAAGGGGTTGGGA 59.800 61.111 0.00 0.00 0.00 4.37
136 137 1.229177 GTTGGCAAGGGGTTGGGAT 60.229 57.895 0.00 0.00 0.00 3.85
137 138 1.078347 TTGGCAAGGGGTTGGGATC 59.922 57.895 0.00 0.00 0.00 3.36
138 139 2.042944 GGCAAGGGGTTGGGATCC 60.043 66.667 1.92 1.92 0.00 3.36
139 140 2.770130 GCAAGGGGTTGGGATCCA 59.230 61.111 15.23 0.00 0.00 3.41
140 141 1.682344 GCAAGGGGTTGGGATCCAC 60.682 63.158 15.23 3.60 30.78 4.02
141 142 1.000359 CAAGGGGTTGGGATCCACC 60.000 63.158 15.23 13.43 30.78 4.61
142 143 2.612493 AAGGGGTTGGGATCCACCG 61.612 63.158 15.23 0.00 40.11 4.94
143 144 4.815108 GGGGTTGGGATCCACCGC 62.815 72.222 18.88 18.88 40.11 5.68
150 151 4.162690 GGATCCACCGCGCCTTCT 62.163 66.667 6.95 0.00 0.00 2.85
158 159 2.258013 CCGCGCCTTCTCAACCAAA 61.258 57.895 0.00 0.00 0.00 3.28
160 161 1.507141 CGCGCCTTCTCAACCAAACT 61.507 55.000 0.00 0.00 0.00 2.66
165 166 3.372206 CGCCTTCTCAACCAAACTAGATG 59.628 47.826 0.00 0.00 0.00 2.90
177 178 3.340814 AACTAGATGAAGCCCACTGTG 57.659 47.619 0.00 0.00 0.00 3.66
190 191 1.678627 CCACTGTGATCTAGAGACCCG 59.321 57.143 9.86 0.00 0.00 5.28
219 220 2.095768 CACTTGCAACTTATCGTGTGGG 60.096 50.000 0.00 0.00 0.00 4.61
221 222 1.518325 TGCAACTTATCGTGTGGGTG 58.482 50.000 0.00 0.00 0.00 4.61
226 227 4.533222 CAACTTATCGTGTGGGTGTTTTC 58.467 43.478 0.00 0.00 0.00 2.29
228 229 4.457466 ACTTATCGTGTGGGTGTTTTCTT 58.543 39.130 0.00 0.00 0.00 2.52
229 230 4.514066 ACTTATCGTGTGGGTGTTTTCTTC 59.486 41.667 0.00 0.00 0.00 2.87
245 273 8.311822 GTGTTTTCTTCTTTCGAAAAAGCTTAC 58.688 33.333 12.41 13.94 40.72 2.34
253 281 7.404203 TCTTTCGAAAAAGCTTACAGTGTTAC 58.596 34.615 12.41 0.00 41.44 2.50
259 287 7.321271 CGAAAAAGCTTACAGTGTTACATGAAG 59.679 37.037 0.00 0.00 0.00 3.02
260 288 7.801716 AAAAGCTTACAGTGTTACATGAAGA 57.198 32.000 0.00 0.00 0.00 2.87
261 289 6.787085 AAGCTTACAGTGTTACATGAAGAC 57.213 37.500 0.00 0.00 0.00 3.01
262 290 4.923871 AGCTTACAGTGTTACATGAAGACG 59.076 41.667 0.00 0.00 36.44 4.18
263 291 4.921515 GCTTACAGTGTTACATGAAGACGA 59.078 41.667 0.00 0.00 36.44 4.20
264 292 5.404366 GCTTACAGTGTTACATGAAGACGAA 59.596 40.000 0.00 0.00 36.44 3.85
265 293 6.400091 GCTTACAGTGTTACATGAAGACGAAG 60.400 42.308 0.00 6.48 36.44 3.79
321 349 8.165239 TCACTGCATAGTAAAAATGTTCAGTT 57.835 30.769 0.00 0.00 34.74 3.16
352 380 7.454260 AAATAAGAACATTCAGTGAAGGACC 57.546 36.000 23.38 13.58 0.00 4.46
353 381 4.713792 AAGAACATTCAGTGAAGGACCT 57.286 40.909 23.38 15.39 0.00 3.85
354 382 4.013267 AGAACATTCAGTGAAGGACCTG 57.987 45.455 23.38 12.50 0.00 4.00
355 383 2.191128 ACATTCAGTGAAGGACCTGC 57.809 50.000 23.38 0.00 0.00 4.85
356 384 1.421268 ACATTCAGTGAAGGACCTGCA 59.579 47.619 23.38 0.00 0.00 4.41
357 385 2.158623 ACATTCAGTGAAGGACCTGCAA 60.159 45.455 23.38 0.00 0.00 4.08
358 386 1.967319 TTCAGTGAAGGACCTGCAAC 58.033 50.000 2.79 0.00 0.00 4.17
359 387 0.836606 TCAGTGAAGGACCTGCAACA 59.163 50.000 2.79 0.00 0.00 3.33
360 388 1.211703 TCAGTGAAGGACCTGCAACAA 59.788 47.619 2.79 0.00 0.00 2.83
361 389 1.334869 CAGTGAAGGACCTGCAACAAC 59.665 52.381 2.79 0.00 0.00 3.32
362 390 0.668535 GTGAAGGACCTGCAACAACC 59.331 55.000 2.79 0.00 0.00 3.77
363 391 0.550914 TGAAGGACCTGCAACAACCT 59.449 50.000 0.00 0.00 0.00 3.50
364 392 1.239347 GAAGGACCTGCAACAACCTC 58.761 55.000 0.00 0.00 0.00 3.85
365 393 0.178990 AAGGACCTGCAACAACCTCC 60.179 55.000 0.00 0.00 0.00 4.30
366 394 1.966451 GGACCTGCAACAACCTCCG 60.966 63.158 0.00 0.00 0.00 4.63
367 395 1.966451 GACCTGCAACAACCTCCGG 60.966 63.158 0.00 0.00 0.00 5.14
368 396 2.391724 GACCTGCAACAACCTCCGGA 62.392 60.000 2.93 2.93 0.00 5.14
369 397 1.002134 CCTGCAACAACCTCCGGAT 60.002 57.895 3.57 0.00 0.00 4.18
370 398 0.609131 CCTGCAACAACCTCCGGATT 60.609 55.000 3.57 0.00 0.00 3.01
371 399 0.523072 CTGCAACAACCTCCGGATTG 59.477 55.000 14.86 14.86 0.00 2.67
372 400 0.179004 TGCAACAACCTCCGGATTGT 60.179 50.000 16.10 16.10 40.76 2.71
373 401 1.072489 TGCAACAACCTCCGGATTGTA 59.928 47.619 20.83 11.83 38.08 2.41
374 402 2.290641 TGCAACAACCTCCGGATTGTAT 60.291 45.455 20.83 10.51 38.08 2.29
375 403 2.752903 GCAACAACCTCCGGATTGTATT 59.247 45.455 20.83 6.59 38.08 1.89
376 404 3.427503 GCAACAACCTCCGGATTGTATTG 60.428 47.826 20.83 17.25 38.08 1.90
377 405 3.713826 ACAACCTCCGGATTGTATTGT 57.286 42.857 19.50 14.89 37.27 2.71
378 406 3.343617 ACAACCTCCGGATTGTATTGTG 58.656 45.455 19.50 10.72 37.27 3.33
379 407 2.038387 ACCTCCGGATTGTATTGTGC 57.962 50.000 3.57 0.00 0.00 4.57
380 408 1.280710 ACCTCCGGATTGTATTGTGCA 59.719 47.619 3.57 0.00 0.00 4.57
381 409 1.670811 CCTCCGGATTGTATTGTGCAC 59.329 52.381 10.75 10.75 0.00 4.57
382 410 2.355197 CTCCGGATTGTATTGTGCACA 58.645 47.619 17.42 17.42 0.00 4.57
383 411 2.945008 CTCCGGATTGTATTGTGCACAT 59.055 45.455 22.39 13.21 0.00 3.21
384 412 3.351740 TCCGGATTGTATTGTGCACATT 58.648 40.909 22.39 19.62 0.00 2.71
385 413 4.518249 TCCGGATTGTATTGTGCACATTA 58.482 39.130 22.39 18.49 0.00 1.90
386 414 5.129634 TCCGGATTGTATTGTGCACATTAT 58.870 37.500 22.39 14.80 0.00 1.28
387 415 5.592282 TCCGGATTGTATTGTGCACATTATT 59.408 36.000 22.39 10.33 0.00 1.40
388 416 6.096141 TCCGGATTGTATTGTGCACATTATTT 59.904 34.615 22.39 10.00 0.00 1.40
389 417 6.417635 CCGGATTGTATTGTGCACATTATTTC 59.582 38.462 22.39 16.80 0.00 2.17
390 418 6.140580 CGGATTGTATTGTGCACATTATTTCG 59.859 38.462 22.39 15.45 0.00 3.46
391 419 6.417635 GGATTGTATTGTGCACATTATTTCGG 59.582 38.462 22.39 0.00 0.00 4.30
392 420 4.667262 TGTATTGTGCACATTATTTCGGC 58.333 39.130 22.39 8.80 0.00 5.54
393 421 3.865011 ATTGTGCACATTATTTCGGCA 57.135 38.095 22.39 1.00 0.00 5.69
394 422 2.917701 TGTGCACATTATTTCGGCAG 57.082 45.000 17.42 0.00 34.78 4.85
395 423 2.431454 TGTGCACATTATTTCGGCAGA 58.569 42.857 17.42 0.00 34.78 4.26
396 424 2.419673 TGTGCACATTATTTCGGCAGAG 59.580 45.455 17.42 0.00 34.78 3.35
397 425 2.677836 GTGCACATTATTTCGGCAGAGA 59.322 45.455 13.17 0.00 34.78 3.10
398 426 3.313526 GTGCACATTATTTCGGCAGAGAT 59.686 43.478 13.17 0.00 34.78 2.75
399 427 3.561310 TGCACATTATTTCGGCAGAGATC 59.439 43.478 0.00 0.00 0.00 2.75
400 428 3.058639 GCACATTATTTCGGCAGAGATCC 60.059 47.826 0.00 0.00 0.00 3.36
401 429 3.499918 CACATTATTTCGGCAGAGATCCC 59.500 47.826 0.00 0.00 0.00 3.85
402 430 3.392616 ACATTATTTCGGCAGAGATCCCT 59.607 43.478 0.00 0.00 0.00 4.20
403 431 3.475566 TTATTTCGGCAGAGATCCCTG 57.524 47.619 0.00 0.00 37.23 4.45
412 440 1.339610 CAGAGATCCCTGCCTACTTCG 59.660 57.143 0.00 0.00 0.00 3.79
413 441 1.215673 AGAGATCCCTGCCTACTTCGA 59.784 52.381 0.00 0.00 0.00 3.71
414 442 2.032620 GAGATCCCTGCCTACTTCGAA 58.967 52.381 0.00 0.00 0.00 3.71
415 443 2.630580 GAGATCCCTGCCTACTTCGAAT 59.369 50.000 0.00 0.00 0.00 3.34
416 444 3.827302 GAGATCCCTGCCTACTTCGAATA 59.173 47.826 0.00 0.00 0.00 1.75
417 445 4.223953 AGATCCCTGCCTACTTCGAATAA 58.776 43.478 0.00 0.00 0.00 1.40
418 446 4.654262 AGATCCCTGCCTACTTCGAATAAA 59.346 41.667 0.00 0.00 0.00 1.40
419 447 5.308237 AGATCCCTGCCTACTTCGAATAAAT 59.692 40.000 0.00 0.00 0.00 1.40
420 448 6.497259 AGATCCCTGCCTACTTCGAATAAATA 59.503 38.462 0.00 0.00 0.00 1.40
421 449 6.097915 TCCCTGCCTACTTCGAATAAATAG 57.902 41.667 0.00 0.00 0.00 1.73
422 450 5.836898 TCCCTGCCTACTTCGAATAAATAGA 59.163 40.000 0.00 0.00 0.00 1.98
423 451 6.015350 TCCCTGCCTACTTCGAATAAATAGAG 60.015 42.308 0.00 0.00 0.00 2.43
424 452 6.159988 CCTGCCTACTTCGAATAAATAGAGG 58.840 44.000 0.00 0.00 0.00 3.69
425 453 6.097915 TGCCTACTTCGAATAAATAGAGGG 57.902 41.667 0.00 0.00 0.00 4.30
426 454 5.836898 TGCCTACTTCGAATAAATAGAGGGA 59.163 40.000 0.00 0.00 0.00 4.20
427 455 6.015350 TGCCTACTTCGAATAAATAGAGGGAG 60.015 42.308 0.00 0.00 0.00 4.30
428 456 6.572703 GCCTACTTCGAATAAATAGAGGGAGG 60.573 46.154 0.00 0.00 42.88 4.30
429 457 5.810080 ACTTCGAATAAATAGAGGGAGGG 57.190 43.478 0.00 0.00 0.00 4.30
430 458 5.217400 ACTTCGAATAAATAGAGGGAGGGT 58.783 41.667 0.00 0.00 0.00 4.34
431 459 5.070580 ACTTCGAATAAATAGAGGGAGGGTG 59.929 44.000 0.00 0.00 0.00 4.61
432 460 3.901844 TCGAATAAATAGAGGGAGGGTGG 59.098 47.826 0.00 0.00 0.00 4.61
433 461 3.646637 CGAATAAATAGAGGGAGGGTGGT 59.353 47.826 0.00 0.00 0.00 4.16
434 462 4.503296 CGAATAAATAGAGGGAGGGTGGTG 60.503 50.000 0.00 0.00 0.00 4.17
435 463 2.661176 AAATAGAGGGAGGGTGGTGA 57.339 50.000 0.00 0.00 0.00 4.02
436 464 2.661176 AATAGAGGGAGGGTGGTGAA 57.339 50.000 0.00 0.00 0.00 3.18
437 465 2.897823 ATAGAGGGAGGGTGGTGAAT 57.102 50.000 0.00 0.00 0.00 2.57
438 466 2.661176 TAGAGGGAGGGTGGTGAATT 57.339 50.000 0.00 0.00 0.00 2.17
439 467 1.760405 AGAGGGAGGGTGGTGAATTT 58.240 50.000 0.00 0.00 0.00 1.82
440 468 1.636003 AGAGGGAGGGTGGTGAATTTC 59.364 52.381 0.00 0.00 0.00 2.17
441 469 0.328258 AGGGAGGGTGGTGAATTTCG 59.672 55.000 0.00 0.00 0.00 3.46
442 470 0.326927 GGGAGGGTGGTGAATTTCGA 59.673 55.000 0.00 0.00 0.00 3.71
443 471 1.271707 GGGAGGGTGGTGAATTTCGAA 60.272 52.381 0.00 0.00 0.00 3.71
444 472 2.084546 GGAGGGTGGTGAATTTCGAAG 58.915 52.381 0.00 0.00 0.00 3.79
448 476 3.821033 AGGGTGGTGAATTTCGAAGAAAG 59.179 43.478 0.00 0.00 45.90 2.62
612 649 2.695759 CGCACAATTAAGCCCGGCA 61.696 57.895 13.15 0.00 0.00 5.69
637 677 2.825836 CGCCACAAGCCCATCCTC 60.826 66.667 0.00 0.00 38.78 3.71
667 707 7.230510 AGGGGCCAAGTTTTTAAATTCAAAATC 59.769 33.333 4.39 0.00 0.00 2.17
706 746 0.536687 CGATCCCCTCGCTGGTACTA 60.537 60.000 0.00 0.00 41.14 1.82
710 750 2.487532 CCCTCGCTGGTACTACCCG 61.488 68.421 2.59 0.59 37.50 5.28
717 757 1.133792 GCTGGTACTACCCGGGTACTA 60.134 57.143 30.02 21.13 37.50 1.82
718 758 2.576615 CTGGTACTACCCGGGTACTAC 58.423 57.143 30.02 29.36 37.50 2.73
719 759 2.173569 CTGGTACTACCCGGGTACTACT 59.826 54.545 32.28 19.25 37.50 2.57
742 782 1.735198 GTAGTGCGCCGTTACAGCA 60.735 57.895 4.18 0.00 38.71 4.41
751 791 1.076533 CCGTTACAGCAGCAGTACCG 61.077 60.000 7.79 7.79 0.00 4.02
785 825 2.258591 CGTCACCGTCACCTCAGG 59.741 66.667 0.00 0.00 0.00 3.86
786 826 2.048127 GTCACCGTCACCTCAGGC 60.048 66.667 0.00 0.00 0.00 4.85
787 827 3.311110 TCACCGTCACCTCAGGCC 61.311 66.667 0.00 0.00 0.00 5.19
788 828 4.742201 CACCGTCACCTCAGGCCG 62.742 72.222 0.00 0.00 0.00 6.13
842 1608 4.460683 CGCCGTCAATTCCCCCGA 62.461 66.667 0.00 0.00 0.00 5.14
978 1760 4.038080 GGCCAAAGCGACGGGTTG 62.038 66.667 0.00 0.00 41.24 3.77
1136 1924 1.586564 CCGCCTTCGACGCTAAGAG 60.587 63.158 2.47 0.00 38.10 2.85
1480 2275 1.687123 TGCCCTAGAATTCTCCGCTAC 59.313 52.381 12.24 0.00 0.00 3.58
1519 2314 2.476854 GCCGTTTCTGCTGCTGAATTAG 60.477 50.000 20.28 14.41 0.00 1.73
1523 2318 2.996249 TCTGCTGCTGAATTAGGAGG 57.004 50.000 6.77 0.00 44.36 4.30
1532 2327 3.444034 GCTGAATTAGGAGGTTTGGTTCC 59.556 47.826 0.00 0.00 0.00 3.62
1533 2328 4.811063 GCTGAATTAGGAGGTTTGGTTCCT 60.811 45.833 0.00 0.00 45.56 3.36
1535 2330 6.652205 TGAATTAGGAGGTTTGGTTCCTAT 57.348 37.500 1.42 0.00 43.63 2.57
1536 2331 6.423182 TGAATTAGGAGGTTTGGTTCCTATG 58.577 40.000 1.42 0.00 43.63 2.23
1537 2332 6.011981 TGAATTAGGAGGTTTGGTTCCTATGT 60.012 38.462 1.42 0.00 43.63 2.29
1538 2333 5.431179 TTAGGAGGTTTGGTTCCTATGTC 57.569 43.478 1.42 0.00 43.63 3.06
1539 2334 3.532102 AGGAGGTTTGGTTCCTATGTCT 58.468 45.455 0.00 0.00 41.97 3.41
1541 2336 4.010349 GGAGGTTTGGTTCCTATGTCTTG 58.990 47.826 0.00 0.00 35.20 3.02
1542 2337 4.506802 GGAGGTTTGGTTCCTATGTCTTGT 60.507 45.833 0.00 0.00 35.20 3.16
1543 2338 4.652822 AGGTTTGGTTCCTATGTCTTGTC 58.347 43.478 0.00 0.00 33.04 3.18
1544 2339 3.756963 GGTTTGGTTCCTATGTCTTGTCC 59.243 47.826 0.00 0.00 0.00 4.02
1545 2340 4.506802 GGTTTGGTTCCTATGTCTTGTCCT 60.507 45.833 0.00 0.00 0.00 3.85
1602 2402 4.103103 CGACTCTGAGTGCGGCGA 62.103 66.667 16.28 0.00 0.00 5.54
1630 2430 0.253610 GGTGAGTCCTCCTCTCTCGA 59.746 60.000 0.00 0.00 41.11 4.04
1631 2431 1.133915 GGTGAGTCCTCCTCTCTCGAT 60.134 57.143 0.00 0.00 41.11 3.59
1632 2432 2.105134 GGTGAGTCCTCCTCTCTCGATA 59.895 54.545 0.00 0.00 41.11 2.92
1633 2433 3.244770 GGTGAGTCCTCCTCTCTCGATAT 60.245 52.174 0.00 0.00 41.11 1.63
1701 2501 1.912043 AGGTGATCTTGAGTTGAGGGG 59.088 52.381 0.00 0.00 0.00 4.79
1707 2507 3.210012 TTGAGTTGAGGGGCCTGGC 62.210 63.158 11.05 11.05 0.00 4.85
1738 2539 6.303054 TCTGAATTTGACCTGTTGGATTGTA 58.697 36.000 0.00 0.00 37.04 2.41
1739 2540 6.206634 TCTGAATTTGACCTGTTGGATTGTAC 59.793 38.462 0.00 0.00 37.04 2.90
1865 2666 3.422303 GCAGCAATGACGGCGACA 61.422 61.111 16.62 15.80 36.08 4.35
1888 2689 1.134670 AGCGCCATTCCACTTAGACTC 60.135 52.381 2.29 0.00 0.00 3.36
2003 2810 7.305474 AGTAAGTGGAAATTTACAATTGAGCG 58.695 34.615 23.00 0.00 31.00 5.03
2020 2827 4.204891 GCATCCGCACGCACGTAC 62.205 66.667 0.00 0.00 38.36 3.67
2021 2828 2.807470 CATCCGCACGCACGTACA 60.807 61.111 0.00 0.00 0.00 2.90
2023 2830 0.868177 CATCCGCACGCACGTACATA 60.868 55.000 0.00 0.00 0.00 2.29
2024 2831 0.868602 ATCCGCACGCACGTACATAC 60.869 55.000 0.00 0.00 0.00 2.39
2025 2832 1.515519 CCGCACGCACGTACATACT 60.516 57.895 0.00 0.00 0.00 2.12
2027 2834 1.469126 CGCACGCACGTACATACTCC 61.469 60.000 0.00 0.00 0.00 3.85
2163 2970 4.351938 CGGTTCGAGTGGACGCCA 62.352 66.667 0.00 0.00 0.00 5.69
2215 3022 0.740149 GCATGATGCAATTGACGGGA 59.260 50.000 13.36 0.00 44.26 5.14
2217 3024 2.797087 GCATGATGCAATTGACGGGAAG 60.797 50.000 13.36 0.00 44.26 3.46
2218 3025 0.810648 TGATGCAATTGACGGGAAGC 59.189 50.000 10.34 0.00 0.00 3.86
2219 3026 0.248215 GATGCAATTGACGGGAAGCG 60.248 55.000 10.34 0.00 0.00 4.68
2221 3028 1.154225 GCAATTGACGGGAAGCGTG 60.154 57.895 10.34 0.00 0.00 5.34
2346 3155 1.991121 ATAATCCCATGCACAGCAGG 58.009 50.000 0.00 0.00 43.65 4.85
2351 3160 1.152819 CCATGCACAGCAGGCCTAT 60.153 57.895 3.98 0.00 43.65 2.57
2373 3191 1.964223 GCTAGGCATGCACTAGTCCTA 59.036 52.381 28.68 16.54 40.01 2.94
2375 3193 3.007398 GCTAGGCATGCACTAGTCCTATT 59.993 47.826 28.68 5.17 40.01 1.73
2378 3196 2.370189 GGCATGCACTAGTCCTATTCCT 59.630 50.000 21.36 0.00 0.00 3.36
2379 3197 3.556004 GGCATGCACTAGTCCTATTCCTC 60.556 52.174 21.36 0.00 0.00 3.71
2380 3198 3.556004 GCATGCACTAGTCCTATTCCTCC 60.556 52.174 14.21 0.00 0.00 4.30
2381 3199 2.679082 TGCACTAGTCCTATTCCTCCC 58.321 52.381 0.00 0.00 0.00 4.30
2403 3221 5.508825 CCCGATCCAACTTGTTCAAATTTGA 60.509 40.000 16.91 16.91 34.92 2.69
2425 3243 7.562454 TGATTCGGTTTTTAACTTCTTCTGT 57.438 32.000 0.00 0.00 0.00 3.41
2427 3245 8.463607 TGATTCGGTTTTTAACTTCTTCTGTTT 58.536 29.630 0.00 0.00 0.00 2.83
2428 3246 8.851960 ATTCGGTTTTTAACTTCTTCTGTTTC 57.148 30.769 0.00 0.00 0.00 2.78
2469 3290 1.217882 CGGCGATCGAAAATAGGCTT 58.782 50.000 21.57 0.00 42.43 4.35
2509 3330 1.868469 TTCCGTTTCCAGTTGGTACG 58.132 50.000 16.16 16.16 40.87 3.67
2644 3474 2.029728 CCGCTTCTCTCGCAGTATTTTG 59.970 50.000 0.00 0.00 0.00 2.44
2702 3568 0.108329 GGCGATCTTTCTCCCGTTCA 60.108 55.000 0.00 0.00 0.00 3.18
2703 3569 1.473434 GGCGATCTTTCTCCCGTTCAT 60.473 52.381 0.00 0.00 0.00 2.57
2704 3570 1.861575 GCGATCTTTCTCCCGTTCATC 59.138 52.381 0.00 0.00 0.00 2.92
2705 3571 2.474816 CGATCTTTCTCCCGTTCATCC 58.525 52.381 0.00 0.00 0.00 3.51
2710 3579 2.231716 TTCTCCCGTTCATCCTCTCA 57.768 50.000 0.00 0.00 0.00 3.27
2818 3695 2.732619 GGAGGTTAGGTGAGGCCGG 61.733 68.421 0.00 0.00 43.70 6.13
3001 3878 1.689352 CGTGGCGGTGAATCGGTAAC 61.689 60.000 0.00 0.00 0.00 2.50
3040 3917 1.788229 TGATTCGTGGGGCAGATAGA 58.212 50.000 0.00 0.00 0.00 1.98
3041 3918 2.329267 TGATTCGTGGGGCAGATAGAT 58.671 47.619 0.00 0.00 0.00 1.98
3042 3919 3.506398 TGATTCGTGGGGCAGATAGATA 58.494 45.455 0.00 0.00 0.00 1.98
3043 3920 3.511540 TGATTCGTGGGGCAGATAGATAG 59.488 47.826 0.00 0.00 0.00 2.08
3081 3960 4.426112 GCCCGCAAAGCAAGAGGC 62.426 66.667 0.00 0.00 45.30 4.70
3159 4045 3.871594 GCTACTAACATGCTACTGTTGGG 59.128 47.826 12.60 7.58 40.67 4.12
3162 4048 3.583086 ACTAACATGCTACTGTTGGGTCT 59.417 43.478 12.60 0.00 40.67 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.388310 AAAGGTTCTCCTCGCTTAGC 57.612 50.000 0.00 0.00 44.35 3.09
1 2 5.908341 AGAATAAAGGTTCTCCTCGCTTAG 58.092 41.667 0.00 0.00 44.35 2.18
2 3 5.934402 AGAATAAAGGTTCTCCTCGCTTA 57.066 39.130 0.00 0.00 44.35 3.09
3 4 4.828072 AGAATAAAGGTTCTCCTCGCTT 57.172 40.909 0.00 0.00 44.35 4.68
4 5 6.487299 AATAGAATAAAGGTTCTCCTCGCT 57.513 37.500 0.00 0.00 44.35 4.93
5 6 6.539103 ACAAATAGAATAAAGGTTCTCCTCGC 59.461 38.462 0.00 0.00 44.35 5.03
6 7 9.250624 CTACAAATAGAATAAAGGTTCTCCTCG 57.749 37.037 0.00 0.00 44.35 4.63
7 8 9.549078 CCTACAAATAGAATAAAGGTTCTCCTC 57.451 37.037 0.00 0.00 44.35 3.71
9 10 8.491958 TCCCTACAAATAGAATAAAGGTTCTCC 58.508 37.037 0.00 0.00 39.15 3.71
10 11 9.549078 CTCCCTACAAATAGAATAAAGGTTCTC 57.451 37.037 0.00 0.00 39.15 2.87
11 12 7.993758 GCTCCCTACAAATAGAATAAAGGTTCT 59.006 37.037 0.00 0.00 41.18 3.01
12 13 7.228906 GGCTCCCTACAAATAGAATAAAGGTTC 59.771 40.741 0.00 0.00 0.00 3.62
13 14 7.061054 GGCTCCCTACAAATAGAATAAAGGTT 58.939 38.462 0.00 0.00 0.00 3.50
14 15 6.602278 GGCTCCCTACAAATAGAATAAAGGT 58.398 40.000 0.00 0.00 0.00 3.50
15 16 5.701290 CGGCTCCCTACAAATAGAATAAAGG 59.299 44.000 0.00 0.00 0.00 3.11
16 17 5.179555 GCGGCTCCCTACAAATAGAATAAAG 59.820 44.000 0.00 0.00 0.00 1.85
17 18 5.061179 GCGGCTCCCTACAAATAGAATAAA 58.939 41.667 0.00 0.00 0.00 1.40
18 19 4.504340 GGCGGCTCCCTACAAATAGAATAA 60.504 45.833 0.00 0.00 0.00 1.40
19 20 3.007614 GGCGGCTCCCTACAAATAGAATA 59.992 47.826 0.00 0.00 0.00 1.75
20 21 2.224548 GGCGGCTCCCTACAAATAGAAT 60.225 50.000 0.00 0.00 0.00 2.40
21 22 1.140252 GGCGGCTCCCTACAAATAGAA 59.860 52.381 0.00 0.00 0.00 2.10
22 23 0.756903 GGCGGCTCCCTACAAATAGA 59.243 55.000 0.00 0.00 0.00 1.98
23 24 0.600255 CGGCGGCTCCCTACAAATAG 60.600 60.000 7.61 0.00 0.00 1.73
24 25 1.444250 CGGCGGCTCCCTACAAATA 59.556 57.895 7.61 0.00 0.00 1.40
25 26 2.189521 CGGCGGCTCCCTACAAAT 59.810 61.111 7.61 0.00 0.00 2.32
26 27 4.770874 GCGGCGGCTCCCTACAAA 62.771 66.667 9.78 0.00 35.83 2.83
42 43 3.254024 TTCAAGAGGGCGAGGTGGC 62.254 63.158 0.00 0.00 43.88 5.01
43 44 1.376037 GTTCAAGAGGGCGAGGTGG 60.376 63.158 0.00 0.00 0.00 4.61
44 45 0.671781 CTGTTCAAGAGGGCGAGGTG 60.672 60.000 0.00 0.00 0.00 4.00
45 46 1.674057 CTGTTCAAGAGGGCGAGGT 59.326 57.895 0.00 0.00 0.00 3.85
46 47 1.078848 CCTGTTCAAGAGGGCGAGG 60.079 63.158 0.00 0.00 0.00 4.63
47 48 0.539051 ATCCTGTTCAAGAGGGCGAG 59.461 55.000 0.00 0.00 0.00 5.03
48 49 0.537188 GATCCTGTTCAAGAGGGCGA 59.463 55.000 0.00 0.00 0.00 5.54
49 50 0.250234 TGATCCTGTTCAAGAGGGCG 59.750 55.000 0.00 0.00 0.00 6.13
50 51 2.489722 GTTTGATCCTGTTCAAGAGGGC 59.510 50.000 0.00 0.00 36.97 5.19
51 52 3.084786 GGTTTGATCCTGTTCAAGAGGG 58.915 50.000 0.00 0.00 36.97 4.30
52 53 4.026356 AGGTTTGATCCTGTTCAAGAGG 57.974 45.455 0.00 0.00 36.97 3.69
53 54 6.486657 TGTTTAGGTTTGATCCTGTTCAAGAG 59.513 38.462 0.00 0.00 36.97 2.85
54 55 6.361433 TGTTTAGGTTTGATCCTGTTCAAGA 58.639 36.000 0.00 0.00 36.97 3.02
55 56 6.486657 TCTGTTTAGGTTTGATCCTGTTCAAG 59.513 38.462 0.00 0.00 36.97 3.02
56 57 6.262273 GTCTGTTTAGGTTTGATCCTGTTCAA 59.738 38.462 0.00 0.00 38.41 2.69
57 58 5.763204 GTCTGTTTAGGTTTGATCCTGTTCA 59.237 40.000 0.00 0.00 38.41 3.18
58 59 5.998363 AGTCTGTTTAGGTTTGATCCTGTTC 59.002 40.000 0.00 0.00 38.41 3.18
59 60 5.941788 AGTCTGTTTAGGTTTGATCCTGTT 58.058 37.500 0.00 0.00 38.41 3.16
60 61 5.568620 AGTCTGTTTAGGTTTGATCCTGT 57.431 39.130 0.00 0.00 38.41 4.00
61 62 7.878127 TCTTTAGTCTGTTTAGGTTTGATCCTG 59.122 37.037 0.00 0.00 38.41 3.86
62 63 7.974504 TCTTTAGTCTGTTTAGGTTTGATCCT 58.025 34.615 0.00 0.00 41.20 3.24
63 64 8.617290 TTCTTTAGTCTGTTTAGGTTTGATCC 57.383 34.615 0.00 0.00 0.00 3.36
64 65 9.880064 GTTTCTTTAGTCTGTTTAGGTTTGATC 57.120 33.333 0.00 0.00 0.00 2.92
65 66 9.403583 TGTTTCTTTAGTCTGTTTAGGTTTGAT 57.596 29.630 0.00 0.00 0.00 2.57
66 67 8.671028 GTGTTTCTTTAGTCTGTTTAGGTTTGA 58.329 33.333 0.00 0.00 0.00 2.69
67 68 7.913821 GGTGTTTCTTTAGTCTGTTTAGGTTTG 59.086 37.037 0.00 0.00 0.00 2.93
68 69 7.832685 AGGTGTTTCTTTAGTCTGTTTAGGTTT 59.167 33.333 0.00 0.00 0.00 3.27
69 70 7.344134 AGGTGTTTCTTTAGTCTGTTTAGGTT 58.656 34.615 0.00 0.00 0.00 3.50
70 71 6.896883 AGGTGTTTCTTTAGTCTGTTTAGGT 58.103 36.000 0.00 0.00 0.00 3.08
71 72 8.897872 TTAGGTGTTTCTTTAGTCTGTTTAGG 57.102 34.615 0.00 0.00 0.00 2.69
73 74 9.669887 TGTTTAGGTGTTTCTTTAGTCTGTTTA 57.330 29.630 0.00 0.00 0.00 2.01
74 75 8.570068 TGTTTAGGTGTTTCTTTAGTCTGTTT 57.430 30.769 0.00 0.00 0.00 2.83
75 76 8.621286 CATGTTTAGGTGTTTCTTTAGTCTGTT 58.379 33.333 0.00 0.00 0.00 3.16
76 77 7.990886 TCATGTTTAGGTGTTTCTTTAGTCTGT 59.009 33.333 0.00 0.00 0.00 3.41
77 78 8.378172 TCATGTTTAGGTGTTTCTTTAGTCTG 57.622 34.615 0.00 0.00 0.00 3.51
78 79 8.974060 TTCATGTTTAGGTGTTTCTTTAGTCT 57.026 30.769 0.00 0.00 0.00 3.24
79 80 7.803659 GCTTCATGTTTAGGTGTTTCTTTAGTC 59.196 37.037 0.00 0.00 0.00 2.59
80 81 7.284489 TGCTTCATGTTTAGGTGTTTCTTTAGT 59.716 33.333 0.00 0.00 0.00 2.24
81 82 7.648142 TGCTTCATGTTTAGGTGTTTCTTTAG 58.352 34.615 0.00 0.00 0.00 1.85
82 83 7.575414 TGCTTCATGTTTAGGTGTTTCTTTA 57.425 32.000 0.00 0.00 0.00 1.85
83 84 6.463995 TGCTTCATGTTTAGGTGTTTCTTT 57.536 33.333 0.00 0.00 0.00 2.52
84 85 6.265196 TCATGCTTCATGTTTAGGTGTTTCTT 59.735 34.615 6.68 0.00 41.98 2.52
85 86 5.769662 TCATGCTTCATGTTTAGGTGTTTCT 59.230 36.000 6.68 0.00 41.98 2.52
86 87 6.012658 TCATGCTTCATGTTTAGGTGTTTC 57.987 37.500 6.68 0.00 41.98 2.78
87 88 5.565439 GCTCATGCTTCATGTTTAGGTGTTT 60.565 40.000 6.68 0.00 41.98 2.83
88 89 4.082571 GCTCATGCTTCATGTTTAGGTGTT 60.083 41.667 6.68 0.00 41.98 3.32
89 90 3.441572 GCTCATGCTTCATGTTTAGGTGT 59.558 43.478 6.68 0.00 41.98 4.16
90 91 3.181493 GGCTCATGCTTCATGTTTAGGTG 60.181 47.826 6.68 0.00 41.98 4.00
91 92 3.019564 GGCTCATGCTTCATGTTTAGGT 58.980 45.455 6.68 0.00 41.98 3.08
92 93 3.018856 TGGCTCATGCTTCATGTTTAGG 58.981 45.455 6.68 0.00 41.98 2.69
93 94 4.913335 ATGGCTCATGCTTCATGTTTAG 57.087 40.909 6.68 0.00 41.98 1.85
94 95 4.098349 GGAATGGCTCATGCTTCATGTTTA 59.902 41.667 6.68 0.00 41.98 2.01
95 96 3.118884 GGAATGGCTCATGCTTCATGTTT 60.119 43.478 6.68 0.00 41.98 2.83
96 97 2.429610 GGAATGGCTCATGCTTCATGTT 59.570 45.455 6.68 0.00 41.98 2.71
97 98 2.029623 GGAATGGCTCATGCTTCATGT 58.970 47.619 6.68 0.00 41.98 3.21
98 99 1.001706 CGGAATGGCTCATGCTTCATG 60.002 52.381 0.59 0.59 42.60 3.07
99 100 1.315690 CGGAATGGCTCATGCTTCAT 58.684 50.000 0.00 0.00 39.59 2.57
100 101 0.035152 ACGGAATGGCTCATGCTTCA 60.035 50.000 0.00 0.00 39.59 3.02
101 102 1.098050 AACGGAATGGCTCATGCTTC 58.902 50.000 0.00 0.00 39.59 3.86
102 103 0.813184 CAACGGAATGGCTCATGCTT 59.187 50.000 0.00 0.00 39.59 3.91
103 104 1.033746 CCAACGGAATGGCTCATGCT 61.034 55.000 0.00 0.00 39.59 3.79
104 105 1.434696 CCAACGGAATGGCTCATGC 59.565 57.895 0.00 0.00 32.78 4.06
111 112 2.350458 CCCCTTGCCAACGGAATGG 61.350 63.158 0.00 0.24 43.70 3.16
112 113 1.184970 AACCCCTTGCCAACGGAATG 61.185 55.000 0.00 0.00 0.00 2.67
113 114 1.155155 AACCCCTTGCCAACGGAAT 59.845 52.632 0.00 0.00 0.00 3.01
114 115 1.830408 CAACCCCTTGCCAACGGAA 60.830 57.895 0.00 0.00 0.00 4.30
115 116 2.203422 CAACCCCTTGCCAACGGA 60.203 61.111 0.00 0.00 0.00 4.69
116 117 3.302344 CCAACCCCTTGCCAACGG 61.302 66.667 0.00 0.00 0.00 4.44
117 118 3.302344 CCCAACCCCTTGCCAACG 61.302 66.667 0.00 0.00 0.00 4.10
118 119 1.229177 ATCCCAACCCCTTGCCAAC 60.229 57.895 0.00 0.00 0.00 3.77
119 120 1.078347 GATCCCAACCCCTTGCCAA 59.922 57.895 0.00 0.00 0.00 4.52
120 121 2.770130 GATCCCAACCCCTTGCCA 59.230 61.111 0.00 0.00 0.00 4.92
121 122 2.042944 GGATCCCAACCCCTTGCC 60.043 66.667 0.00 0.00 0.00 4.52
122 123 1.682344 GTGGATCCCAACCCCTTGC 60.682 63.158 9.90 0.00 34.18 4.01
123 124 1.000359 GGTGGATCCCAACCCCTTG 60.000 63.158 9.90 0.00 34.66 3.61
124 125 2.612493 CGGTGGATCCCAACCCCTT 61.612 63.158 14.20 0.00 38.12 3.95
125 126 3.015145 CGGTGGATCCCAACCCCT 61.015 66.667 14.20 0.00 38.12 4.79
126 127 4.815108 GCGGTGGATCCCAACCCC 62.815 72.222 14.20 3.28 38.12 4.95
133 134 4.162690 AGAAGGCGCGGTGGATCC 62.163 66.667 8.83 4.20 0.00 3.36
134 135 2.586357 GAGAAGGCGCGGTGGATC 60.586 66.667 8.83 0.00 0.00 3.36
135 136 2.954684 TTGAGAAGGCGCGGTGGAT 61.955 57.895 8.83 0.00 0.00 3.41
136 137 3.621805 TTGAGAAGGCGCGGTGGA 61.622 61.111 8.83 0.00 0.00 4.02
137 138 3.423154 GTTGAGAAGGCGCGGTGG 61.423 66.667 8.83 0.00 0.00 4.61
138 139 3.423154 GGTTGAGAAGGCGCGGTG 61.423 66.667 8.83 0.00 0.00 4.94
139 140 2.951475 TTTGGTTGAGAAGGCGCGGT 62.951 55.000 8.83 0.00 0.00 5.68
140 141 2.258013 TTTGGTTGAGAAGGCGCGG 61.258 57.895 8.83 0.00 0.00 6.46
141 142 1.082104 GTTTGGTTGAGAAGGCGCG 60.082 57.895 0.00 0.00 0.00 6.86
142 143 1.464997 CTAGTTTGGTTGAGAAGGCGC 59.535 52.381 0.00 0.00 0.00 6.53
143 144 3.040147 TCTAGTTTGGTTGAGAAGGCG 57.960 47.619 0.00 0.00 0.00 5.52
144 145 4.579869 TCATCTAGTTTGGTTGAGAAGGC 58.420 43.478 0.00 0.00 0.00 4.35
145 146 5.123027 GCTTCATCTAGTTTGGTTGAGAAGG 59.877 44.000 0.00 0.00 32.73 3.46
146 147 5.123027 GGCTTCATCTAGTTTGGTTGAGAAG 59.877 44.000 0.00 0.00 34.61 2.85
147 148 5.003804 GGCTTCATCTAGTTTGGTTGAGAA 58.996 41.667 0.00 0.00 0.00 2.87
148 149 4.565652 GGGCTTCATCTAGTTTGGTTGAGA 60.566 45.833 0.00 0.00 0.00 3.27
149 150 3.691609 GGGCTTCATCTAGTTTGGTTGAG 59.308 47.826 0.00 0.00 0.00 3.02
150 151 3.073798 TGGGCTTCATCTAGTTTGGTTGA 59.926 43.478 0.00 0.00 0.00 3.18
158 159 2.540383 TCACAGTGGGCTTCATCTAGT 58.460 47.619 0.00 0.00 0.00 2.57
160 161 3.378512 AGATCACAGTGGGCTTCATCTA 58.621 45.455 0.00 0.00 0.00 1.98
165 166 3.027412 TCTCTAGATCACAGTGGGCTTC 58.973 50.000 0.00 0.00 0.00 3.86
177 178 1.404391 TCGTTTGCGGGTCTCTAGATC 59.596 52.381 0.00 0.00 38.89 2.75
226 227 6.487103 ACACTGTAAGCTTTTTCGAAAGAAG 58.513 36.000 19.65 19.65 45.93 2.85
228 229 6.431198 AACACTGTAAGCTTTTTCGAAAGA 57.569 33.333 10.98 5.78 37.60 2.52
229 230 7.184106 TGTAACACTGTAAGCTTTTTCGAAAG 58.816 34.615 10.98 1.29 37.60 2.62
245 273 5.907197 AACTTCGTCTTCATGTAACACTG 57.093 39.130 0.00 0.00 0.00 3.66
253 281 5.251081 CAGCGAATAAACTTCGTCTTCATG 58.749 41.667 8.88 0.00 43.24 3.07
259 287 5.713822 ATAACCAGCGAATAAACTTCGTC 57.286 39.130 8.88 2.46 43.24 4.20
260 288 6.490566 AAATAACCAGCGAATAAACTTCGT 57.509 33.333 8.88 0.00 43.24 3.85
261 289 7.790861 AAAAATAACCAGCGAATAAACTTCG 57.209 32.000 3.15 3.15 44.06 3.79
291 319 9.463443 GAACATTTTTACTATGCAGTGAACTTT 57.537 29.630 0.00 0.00 36.14 2.66
328 356 7.175641 CAGGTCCTTCACTGAATGTTCTTATTT 59.824 37.037 0.00 0.00 36.86 1.40
329 357 6.656693 CAGGTCCTTCACTGAATGTTCTTATT 59.343 38.462 0.00 0.00 36.86 1.40
330 358 6.176183 CAGGTCCTTCACTGAATGTTCTTAT 58.824 40.000 0.00 0.00 36.86 1.73
332 360 4.392940 CAGGTCCTTCACTGAATGTTCTT 58.607 43.478 0.00 0.00 36.86 2.52
333 361 3.808618 GCAGGTCCTTCACTGAATGTTCT 60.809 47.826 0.00 0.00 36.86 3.01
334 362 2.485814 GCAGGTCCTTCACTGAATGTTC 59.514 50.000 0.00 0.00 36.86 3.18
335 363 2.158623 TGCAGGTCCTTCACTGAATGTT 60.159 45.455 0.00 0.00 36.86 2.71
336 364 1.421268 TGCAGGTCCTTCACTGAATGT 59.579 47.619 0.00 0.00 36.86 2.71
337 365 2.189594 TGCAGGTCCTTCACTGAATG 57.810 50.000 0.00 0.00 36.86 2.67
339 367 1.211703 TGTTGCAGGTCCTTCACTGAA 59.788 47.619 0.00 0.00 36.86 3.02
340 368 0.836606 TGTTGCAGGTCCTTCACTGA 59.163 50.000 0.00 0.00 36.86 3.41
341 369 1.334869 GTTGTTGCAGGTCCTTCACTG 59.665 52.381 0.00 0.00 37.76 3.66
343 371 0.668535 GGTTGTTGCAGGTCCTTCAC 59.331 55.000 0.00 0.00 0.00 3.18
344 372 0.550914 AGGTTGTTGCAGGTCCTTCA 59.449 50.000 0.00 0.00 0.00 3.02
345 373 1.239347 GAGGTTGTTGCAGGTCCTTC 58.761 55.000 0.00 0.00 0.00 3.46
346 374 0.178990 GGAGGTTGTTGCAGGTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
347 375 1.456287 GGAGGTTGTTGCAGGTCCT 59.544 57.895 2.32 2.32 0.00 3.85
348 376 1.966451 CGGAGGTTGTTGCAGGTCC 60.966 63.158 0.00 0.00 0.00 4.46
362 390 2.355197 TGTGCACAATACAATCCGGAG 58.645 47.619 19.28 0.00 0.00 4.63
363 391 2.481289 TGTGCACAATACAATCCGGA 57.519 45.000 19.28 6.61 0.00 5.14
364 392 3.781079 AATGTGCACAATACAATCCGG 57.219 42.857 25.72 0.00 0.00 5.14
365 393 6.140580 CGAAATAATGTGCACAATACAATCCG 59.859 38.462 25.72 15.91 0.00 4.18
366 394 6.417635 CCGAAATAATGTGCACAATACAATCC 59.582 38.462 25.72 8.33 0.00 3.01
367 395 6.074888 GCCGAAATAATGTGCACAATACAATC 60.075 38.462 25.72 16.34 0.00 2.67
368 396 5.748152 GCCGAAATAATGTGCACAATACAAT 59.252 36.000 25.72 9.49 0.00 2.71
369 397 5.098893 GCCGAAATAATGTGCACAATACAA 58.901 37.500 25.72 7.99 0.00 2.41
370 398 4.156739 TGCCGAAATAATGTGCACAATACA 59.843 37.500 25.72 9.91 0.00 2.29
371 399 4.667262 TGCCGAAATAATGTGCACAATAC 58.333 39.130 25.72 7.27 0.00 1.89
372 400 4.637977 TCTGCCGAAATAATGTGCACAATA 59.362 37.500 25.72 20.82 0.00 1.90
373 401 3.443329 TCTGCCGAAATAATGTGCACAAT 59.557 39.130 25.72 19.05 0.00 2.71
374 402 2.816672 TCTGCCGAAATAATGTGCACAA 59.183 40.909 25.72 8.96 0.00 3.33
375 403 2.419673 CTCTGCCGAAATAATGTGCACA 59.580 45.455 24.08 24.08 0.00 4.57
376 404 2.677836 TCTCTGCCGAAATAATGTGCAC 59.322 45.455 10.75 10.75 0.00 4.57
377 405 2.984562 TCTCTGCCGAAATAATGTGCA 58.015 42.857 0.00 0.00 0.00 4.57
378 406 3.058639 GGATCTCTGCCGAAATAATGTGC 60.059 47.826 0.00 0.00 0.00 4.57
379 407 3.499918 GGGATCTCTGCCGAAATAATGTG 59.500 47.826 0.00 0.00 0.00 3.21
380 408 3.392616 AGGGATCTCTGCCGAAATAATGT 59.607 43.478 0.00 0.00 38.08 2.71
381 409 3.750130 CAGGGATCTCTGCCGAAATAATG 59.250 47.826 10.29 0.00 38.08 1.90
382 410 4.013267 CAGGGATCTCTGCCGAAATAAT 57.987 45.455 10.29 0.00 38.08 1.28
383 411 3.475566 CAGGGATCTCTGCCGAAATAA 57.524 47.619 10.29 0.00 38.08 1.40
392 420 1.339610 CGAAGTAGGCAGGGATCTCTG 59.660 57.143 18.90 18.90 37.79 3.35
393 421 1.215673 TCGAAGTAGGCAGGGATCTCT 59.784 52.381 0.00 0.00 0.00 3.10
394 422 1.693627 TCGAAGTAGGCAGGGATCTC 58.306 55.000 0.00 0.00 0.00 2.75
395 423 2.160721 TTCGAAGTAGGCAGGGATCT 57.839 50.000 0.00 0.00 0.00 2.75
396 424 4.602340 TTATTCGAAGTAGGCAGGGATC 57.398 45.455 3.35 0.00 0.00 3.36
397 425 5.568620 ATTTATTCGAAGTAGGCAGGGAT 57.431 39.130 3.35 0.00 0.00 3.85
398 426 5.836898 TCTATTTATTCGAAGTAGGCAGGGA 59.163 40.000 3.35 0.00 0.00 4.20
399 427 6.097915 TCTATTTATTCGAAGTAGGCAGGG 57.902 41.667 3.35 0.00 0.00 4.45
400 428 6.159988 CCTCTATTTATTCGAAGTAGGCAGG 58.840 44.000 3.35 0.00 0.00 4.85
401 429 6.015350 TCCCTCTATTTATTCGAAGTAGGCAG 60.015 42.308 3.35 0.00 0.00 4.85
402 430 5.836898 TCCCTCTATTTATTCGAAGTAGGCA 59.163 40.000 3.35 0.00 0.00 4.75
403 431 6.342338 TCCCTCTATTTATTCGAAGTAGGC 57.658 41.667 3.35 0.00 0.00 3.93
404 432 6.071278 CCCTCCCTCTATTTATTCGAAGTAGG 60.071 46.154 3.35 2.57 0.00 3.18
405 433 6.494146 ACCCTCCCTCTATTTATTCGAAGTAG 59.506 42.308 3.35 3.95 0.00 2.57
406 434 6.267014 CACCCTCCCTCTATTTATTCGAAGTA 59.733 42.308 3.35 0.00 0.00 2.24
407 435 5.070580 CACCCTCCCTCTATTTATTCGAAGT 59.929 44.000 3.35 0.00 0.00 3.01
408 436 5.511545 CCACCCTCCCTCTATTTATTCGAAG 60.512 48.000 3.35 0.00 0.00 3.79
409 437 4.347000 CCACCCTCCCTCTATTTATTCGAA 59.653 45.833 0.00 0.00 0.00 3.71
410 438 3.901844 CCACCCTCCCTCTATTTATTCGA 59.098 47.826 0.00 0.00 0.00 3.71
411 439 3.646637 ACCACCCTCCCTCTATTTATTCG 59.353 47.826 0.00 0.00 0.00 3.34
412 440 4.658901 TCACCACCCTCCCTCTATTTATTC 59.341 45.833 0.00 0.00 0.00 1.75
413 441 4.641868 TCACCACCCTCCCTCTATTTATT 58.358 43.478 0.00 0.00 0.00 1.40
414 442 4.295905 TCACCACCCTCCCTCTATTTAT 57.704 45.455 0.00 0.00 0.00 1.40
415 443 3.788116 TCACCACCCTCCCTCTATTTA 57.212 47.619 0.00 0.00 0.00 1.40
416 444 2.661176 TCACCACCCTCCCTCTATTT 57.339 50.000 0.00 0.00 0.00 1.40
417 445 2.661176 TTCACCACCCTCCCTCTATT 57.339 50.000 0.00 0.00 0.00 1.73
418 446 2.897823 ATTCACCACCCTCCCTCTAT 57.102 50.000 0.00 0.00 0.00 1.98
419 447 2.661176 AATTCACCACCCTCCCTCTA 57.339 50.000 0.00 0.00 0.00 2.43
420 448 1.636003 GAAATTCACCACCCTCCCTCT 59.364 52.381 0.00 0.00 0.00 3.69
421 449 1.679032 CGAAATTCACCACCCTCCCTC 60.679 57.143 0.00 0.00 0.00 4.30
422 450 0.328258 CGAAATTCACCACCCTCCCT 59.672 55.000 0.00 0.00 0.00 4.20
423 451 0.326927 TCGAAATTCACCACCCTCCC 59.673 55.000 0.00 0.00 0.00 4.30
424 452 2.084546 CTTCGAAATTCACCACCCTCC 58.915 52.381 0.00 0.00 0.00 4.30
425 453 3.053831 TCTTCGAAATTCACCACCCTC 57.946 47.619 0.00 0.00 0.00 4.30
426 454 3.502123 TTCTTCGAAATTCACCACCCT 57.498 42.857 0.00 0.00 0.00 4.34
427 455 3.818773 TCTTTCTTCGAAATTCACCACCC 59.181 43.478 0.00 0.00 0.00 4.61
428 456 5.432885 TTCTTTCTTCGAAATTCACCACC 57.567 39.130 0.00 0.00 0.00 4.61
429 457 7.193595 TCTTTTCTTTCTTCGAAATTCACCAC 58.806 34.615 0.00 0.00 31.17 4.16
430 458 7.328277 TCTTTTCTTTCTTCGAAATTCACCA 57.672 32.000 0.00 0.00 31.17 4.17
431 459 7.700656 TGTTCTTTTCTTTCTTCGAAATTCACC 59.299 33.333 0.00 0.00 31.17 4.02
432 460 8.614994 TGTTCTTTTCTTTCTTCGAAATTCAC 57.385 30.769 0.00 0.00 31.17 3.18
433 461 9.801873 AATGTTCTTTTCTTTCTTCGAAATTCA 57.198 25.926 0.00 0.00 31.17 2.57
435 463 9.801873 TGAATGTTCTTTTCTTTCTTCGAAATT 57.198 25.926 0.00 0.00 31.17 1.82
436 464 9.455847 CTGAATGTTCTTTTCTTTCTTCGAAAT 57.544 29.630 0.00 0.00 31.17 2.17
437 465 8.458843 ACTGAATGTTCTTTTCTTTCTTCGAAA 58.541 29.630 0.00 0.00 0.00 3.46
438 466 7.910162 CACTGAATGTTCTTTTCTTTCTTCGAA 59.090 33.333 0.00 0.00 0.00 3.71
439 467 7.279981 TCACTGAATGTTCTTTTCTTTCTTCGA 59.720 33.333 0.00 0.00 0.00 3.71
440 468 7.409697 TCACTGAATGTTCTTTTCTTTCTTCG 58.590 34.615 0.00 0.00 0.00 3.79
441 469 9.230932 CTTCACTGAATGTTCTTTTCTTTCTTC 57.769 33.333 0.00 0.00 0.00 2.87
442 470 7.704047 GCTTCACTGAATGTTCTTTTCTTTCTT 59.296 33.333 0.00 0.00 0.00 2.52
443 471 7.148018 TGCTTCACTGAATGTTCTTTTCTTTCT 60.148 33.333 0.00 0.00 0.00 2.52
444 472 6.974622 TGCTTCACTGAATGTTCTTTTCTTTC 59.025 34.615 0.00 0.00 0.00 2.62
448 476 6.919662 TGAATGCTTCACTGAATGTTCTTTTC 59.080 34.615 0.00 0.00 34.08 2.29
637 677 1.238625 TAAAAACTTGGCCCCTCGCG 61.239 55.000 0.00 0.00 38.94 5.87
699 739 2.729028 GTAGTACCCGGGTAGTACCA 57.271 55.000 43.75 28.30 45.04 3.25
718 758 2.531927 TAACGGCGCACTACACGGAG 62.532 60.000 10.83 0.00 0.00 4.63
719 759 2.624868 TAACGGCGCACTACACGGA 61.625 57.895 10.83 0.00 0.00 4.69
742 782 1.133790 GGAACGTGATACGGTACTGCT 59.866 52.381 0.23 0.00 44.27 4.24
886 1653 1.147557 CGGCGTACAAATACCCGGTC 61.148 60.000 0.00 0.00 39.52 4.79
978 1760 1.655587 GCGAACGGACGAAAAGAAAC 58.344 50.000 7.62 0.00 35.09 2.78
1123 1911 1.743958 CTTCCTCCTCTTAGCGTCGAA 59.256 52.381 0.00 0.00 0.00 3.71
1131 1919 1.198713 CCTGCTGCTTCCTCCTCTTA 58.801 55.000 0.00 0.00 0.00 2.10
1136 1924 4.087892 TCGCCTGCTGCTTCCTCC 62.088 66.667 0.00 0.00 38.05 4.30
1404 2195 4.135153 CTAGCCGCCACGTCTGCT 62.135 66.667 5.18 2.22 37.84 4.24
1406 2197 2.103143 CTCTAGCCGCCACGTCTG 59.897 66.667 0.00 0.00 0.00 3.51
1407 2198 2.045242 TCTCTAGCCGCCACGTCT 60.045 61.111 0.00 0.00 0.00 4.18
1443 2234 1.476007 GCAGTGGACCACTCACCTCT 61.476 60.000 24.76 0.00 43.43 3.69
1519 2314 4.010349 CAAGACATAGGAACCAAACCTCC 58.990 47.826 0.00 0.00 38.76 4.30
1523 2318 4.455877 CAGGACAAGACATAGGAACCAAAC 59.544 45.833 0.00 0.00 0.00 2.93
1532 2327 1.661341 GCCTGCAGGACAAGACATAG 58.339 55.000 37.21 5.32 37.39 2.23
1533 2328 0.108186 CGCCTGCAGGACAAGACATA 60.108 55.000 37.21 0.00 37.39 2.29
1535 2330 2.031012 CGCCTGCAGGACAAGACA 59.969 61.111 37.21 0.00 37.39 3.41
1536 2331 2.031163 ACGCCTGCAGGACAAGAC 59.969 61.111 37.21 16.18 37.39 3.01
1537 2332 2.031012 CACGCCTGCAGGACAAGA 59.969 61.111 37.21 0.00 37.39 3.02
1538 2333 3.730761 GCACGCCTGCAGGACAAG 61.731 66.667 37.21 23.76 43.62 3.16
1544 2339 4.731612 ACTCTCGCACGCCTGCAG 62.732 66.667 6.78 6.78 44.50 4.41
1545 2340 4.724602 GACTCTCGCACGCCTGCA 62.725 66.667 8.42 0.00 44.50 4.41
1630 2430 4.710375 AGCAGAATTCCCGTCGGTATATAT 59.290 41.667 11.06 0.00 0.00 0.86
1631 2431 4.082408 CAGCAGAATTCCCGTCGGTATATA 60.082 45.833 11.06 0.00 0.00 0.86
1632 2432 2.897969 AGCAGAATTCCCGTCGGTATAT 59.102 45.455 11.06 0.00 0.00 0.86
1633 2433 2.035449 CAGCAGAATTCCCGTCGGTATA 59.965 50.000 11.06 0.00 0.00 1.47
1681 2481 1.912043 CCCCTCAACTCAAGATCACCT 59.088 52.381 0.00 0.00 0.00 4.00
1701 2501 0.893447 ATTCAGAAGCAAAGCCAGGC 59.107 50.000 1.84 1.84 0.00 4.85
1707 2507 5.192327 ACAGGTCAAATTCAGAAGCAAAG 57.808 39.130 0.00 0.00 0.00 2.77
1738 2539 0.760945 CGCCTCCCTCCTGGATTAGT 60.761 60.000 0.00 0.00 44.07 2.24
1739 2540 0.470080 TCGCCTCCCTCCTGGATTAG 60.470 60.000 0.00 0.00 44.07 1.73
1851 2652 3.372676 CTGCTGTCGCCGTCATTGC 62.373 63.158 0.00 0.00 34.43 3.56
1865 2666 0.745845 CTAAGTGGAATGGCGCTGCT 60.746 55.000 7.64 0.00 0.00 4.24
1888 2689 2.790791 ATCCTTGCTCTCGCCTCCG 61.791 63.158 0.00 0.00 34.43 4.63
2003 2810 4.204891 GTACGTGCGTGCGGATGC 62.205 66.667 14.93 14.93 43.20 3.91
2025 2832 4.373116 GCGACTGCCAAGACGGGA 62.373 66.667 0.00 0.00 41.09 5.14
2027 2834 2.811317 GAGCGACTGCCAAGACGG 60.811 66.667 0.00 0.00 44.31 4.79
2098 2905 0.662374 ACGTCGAAGTTGTACCTGCG 60.662 55.000 0.00 0.00 34.66 5.18
2163 2970 3.314331 CCTCAGACGGTGGCCACT 61.314 66.667 33.91 17.10 0.00 4.00
2185 2992 1.167155 GCATCATGCTCTGCTCAGGG 61.167 60.000 1.02 0.00 40.96 4.45
2186 2993 0.463833 TGCATCATGCTCTGCTCAGG 60.464 55.000 11.84 0.00 45.31 3.86
2187 2994 1.379527 TTGCATCATGCTCTGCTCAG 58.620 50.000 11.84 0.00 45.31 3.35
2188 2995 2.052782 ATTGCATCATGCTCTGCTCA 57.947 45.000 11.84 0.00 45.31 4.26
2189 2996 2.357952 TCAATTGCATCATGCTCTGCTC 59.642 45.455 11.84 0.00 45.31 4.26
2190 2997 2.099263 GTCAATTGCATCATGCTCTGCT 59.901 45.455 11.84 0.00 45.31 4.24
2191 2998 2.460918 GTCAATTGCATCATGCTCTGC 58.539 47.619 11.84 7.53 45.31 4.26
2230 3037 1.217244 GCCTTCCCTTTCTACGCGA 59.783 57.895 15.93 0.00 0.00 5.87
2351 3160 1.964223 GGACTAGTGCATGCCTAGCTA 59.036 52.381 28.61 18.90 36.23 3.32
2365 3174 3.245300 TGGATCGGGAGGAATAGGACTAG 60.245 52.174 0.00 0.00 0.00 2.57
2373 3191 1.916181 ACAAGTTGGATCGGGAGGAAT 59.084 47.619 7.96 0.00 0.00 3.01
2375 3193 1.278127 GAACAAGTTGGATCGGGAGGA 59.722 52.381 7.96 0.00 0.00 3.71
2378 3196 2.940994 TTGAACAAGTTGGATCGGGA 57.059 45.000 7.96 0.00 0.00 5.14
2379 3197 4.519540 AATTTGAACAAGTTGGATCGGG 57.480 40.909 7.96 0.00 0.00 5.14
2380 3198 5.527951 TCAAATTTGAACAAGTTGGATCGG 58.472 37.500 18.45 0.00 33.55 4.18
2381 3199 7.409661 CGAATCAAATTTGAACAAGTTGGATCG 60.410 37.037 23.91 15.15 41.13 3.69
2403 3221 8.683615 AGAAACAGAAGAAGTTAAAAACCGAAT 58.316 29.630 0.00 0.00 0.00 3.34
2425 3243 6.040054 GTGGCCTAGTGAAAGGTAAAAAGAAA 59.960 38.462 3.32 0.00 39.02 2.52
2427 3245 5.067954 GTGGCCTAGTGAAAGGTAAAAAGA 58.932 41.667 3.32 0.00 39.02 2.52
2428 3246 4.083484 CGTGGCCTAGTGAAAGGTAAAAAG 60.083 45.833 3.32 0.00 39.02 2.27
2436 3254 2.100631 CGCCGTGGCCTAGTGAAAG 61.101 63.158 3.32 0.00 37.98 2.62
2469 3290 0.250124 CAGGAGTTACACAACGGCCA 60.250 55.000 2.24 0.00 39.78 5.36
2562 3386 2.930019 AGGTAGGCCTGCAGCACA 60.930 61.111 23.21 0.00 45.05 4.57
2624 3454 2.668457 ACAAAATACTGCGAGAGAAGCG 59.332 45.455 0.00 0.00 42.04 4.68
2644 3474 2.047679 AGCGTGACTGTACGAAGAAC 57.952 50.000 11.93 0.00 46.46 3.01
2689 3555 2.497675 TGAGAGGATGAACGGGAGAAAG 59.502 50.000 0.00 0.00 0.00 2.62
2702 3568 0.107703 TTTCGCCGCAATGAGAGGAT 60.108 50.000 0.00 0.00 40.01 3.24
2703 3569 1.019278 GTTTCGCCGCAATGAGAGGA 61.019 55.000 0.00 0.00 40.01 3.71
2704 3570 1.298157 TGTTTCGCCGCAATGAGAGG 61.298 55.000 0.00 0.00 40.66 3.69
2705 3571 0.095935 CTGTTTCGCCGCAATGAGAG 59.904 55.000 0.00 0.00 0.00 3.20
2743 3612 3.197983 TCCTCTCTCTCTCTTTCTCCCT 58.802 50.000 0.00 0.00 0.00 4.20
2744 3613 3.662759 TCCTCTCTCTCTCTTTCTCCC 57.337 52.381 0.00 0.00 0.00 4.30
2745 3614 3.381590 GCTTCCTCTCTCTCTCTTTCTCC 59.618 52.174 0.00 0.00 0.00 3.71
2746 3615 4.273318 AGCTTCCTCTCTCTCTCTTTCTC 58.727 47.826 0.00 0.00 0.00 2.87
2747 3616 4.322057 AGCTTCCTCTCTCTCTCTTTCT 57.678 45.455 0.00 0.00 0.00 2.52
2748 3617 5.170748 CAAAGCTTCCTCTCTCTCTCTTTC 58.829 45.833 0.00 0.00 0.00 2.62
2749 3618 4.592778 ACAAAGCTTCCTCTCTCTCTCTTT 59.407 41.667 0.00 0.00 0.00 2.52
2750 3619 4.159557 ACAAAGCTTCCTCTCTCTCTCTT 58.840 43.478 0.00 0.00 0.00 2.85
2818 3695 5.321516 CCGTAATTACACTTGTTTAGCTGC 58.678 41.667 15.67 0.00 0.00 5.25
3001 3878 0.604578 TCGGTAGAACTCCCCGTTTG 59.395 55.000 10.87 0.00 42.30 2.93
3040 3917 3.402681 AGCTGCACGTGCCCCTAT 61.403 61.111 35.72 15.66 41.18 2.57
3041 3918 4.393155 CAGCTGCACGTGCCCCTA 62.393 66.667 35.72 17.72 41.18 3.53
3081 3960 1.610522 GGCAAAGCCCAGCATATACTG 59.389 52.381 0.00 0.00 44.06 2.74
3082 3961 1.986882 GGCAAAGCCCAGCATATACT 58.013 50.000 0.00 0.00 44.06 2.12
3100 3979 5.936956 AGAAAGAAGAAGCATCTTACACTGG 59.063 40.000 3.79 0.00 45.91 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.