Multiple sequence alignment - TraesCS7B01G076900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G076900 chr7B 100.000 2291 0 0 1 2291 86649172 86646882 0.000000e+00 4231.0
1 TraesCS7B01G076900 chr7B 86.885 1403 87 36 571 1902 86637730 86636354 0.000000e+00 1482.0
2 TraesCS7B01G076900 chr7B 89.583 96 9 1 294 389 86639758 86639664 1.110000e-23 121.0
3 TraesCS7B01G076900 chr7D 87.110 1187 84 31 323 1444 124831217 124830035 0.000000e+00 1280.0
4 TraesCS7B01G076900 chr7D 88.867 1006 38 20 403 1335 124833732 124832728 0.000000e+00 1170.0
5 TraesCS7B01G076900 chr7D 87.065 920 57 30 434 1306 124644753 124643849 0.000000e+00 983.0
6 TraesCS7B01G076900 chr7D 85.745 919 67 17 357 1242 124604739 124603852 0.000000e+00 913.0
7 TraesCS7B01G076900 chr7D 90.895 626 41 10 1003 1628 124650654 124650045 0.000000e+00 826.0
8 TraesCS7B01G076900 chr7D 84.000 825 62 31 1363 2138 124832658 124831855 0.000000e+00 728.0
9 TraesCS7B01G076900 chr7D 81.422 689 77 33 627 1291 124595069 124594408 1.210000e-142 516.0
10 TraesCS7B01G076900 chr7D 96.117 309 10 2 2 309 633815045 633814738 9.450000e-139 503.0
11 TraesCS7B01G076900 chr7D 87.268 377 18 10 1243 1616 124596453 124596104 9.860000e-109 403.0
12 TraesCS7B01G076900 chr7D 91.667 108 8 1 1901 2008 124838276 124838170 5.100000e-32 148.0
13 TraesCS7B01G076900 chr7D 91.463 82 5 2 306 387 124644833 124644754 6.690000e-21 111.0
14 TraesCS7B01G076900 chr7D 86.735 98 9 3 294 388 124663410 124663314 3.110000e-19 106.0
15 TraesCS7B01G076900 chr7D 97.297 37 0 1 383 418 40156514 40156478 6.830000e-06 62.1
16 TraesCS7B01G076900 chr7A 85.425 1036 56 31 787 1769 127042226 127041233 0.000000e+00 989.0
17 TraesCS7B01G076900 chr7A 92.331 652 32 10 979 1618 127003646 127003001 0.000000e+00 911.0
18 TraesCS7B01G076900 chr7A 86.565 588 40 11 357 921 127004218 127003647 1.500000e-171 612.0
19 TraesCS7B01G076900 chr7A 82.319 690 69 31 627 1291 127001924 127001263 1.200000e-152 549.0
20 TraesCS7B01G076900 chr7A 94.194 310 17 1 1 309 732735980 732736289 2.660000e-129 472.0
21 TraesCS7B01G076900 chr7A 85.806 465 34 11 357 789 127042847 127042383 4.460000e-127 464.0
22 TraesCS7B01G076900 chr7A 84.332 434 31 8 440 838 127039625 127039194 7.670000e-105 390.0
23 TraesCS7B01G076900 chr7A 92.893 197 12 2 1226 1420 127038717 127038521 3.730000e-73 285.0
24 TraesCS7B01G076900 chr7A 85.385 260 17 4 1661 1899 127003003 127002744 1.360000e-62 250.0
25 TraesCS7B01G076900 chr7A 94.595 111 5 1 1898 2008 127005265 127005156 1.090000e-38 171.0
26 TraesCS7B01G076900 chr7A 88.288 111 6 2 1898 2008 127043656 127043553 2.390000e-25 126.0
27 TraesCS7B01G076900 chr4B 95.469 309 13 1 1 308 534329735 534329427 2.040000e-135 492.0
28 TraesCS7B01G076900 chr4B 94.603 315 15 2 1 314 32176141 32175828 9.510000e-134 486.0
29 TraesCS7B01G076900 chr3A 94.855 311 14 2 1 310 672185560 672185251 3.420000e-133 484.0
30 TraesCS7B01G076900 chr3A 92.880 309 20 2 1 308 638246472 638246165 4.490000e-122 448.0
31 TraesCS7B01G076900 chr3A 92.308 39 3 0 384 422 102680831 102680793 3.180000e-04 56.5
32 TraesCS7B01G076900 chr2A 94.481 308 15 2 1 307 199708734 199709040 7.410000e-130 473.0
33 TraesCS7B01G076900 chr2A 97.222 36 0 1 384 418 653371926 653371961 2.460000e-05 60.2
34 TraesCS7B01G076900 chr4D 90.939 309 25 3 1 307 45773468 45773161 1.640000e-111 412.0
35 TraesCS7B01G076900 chr4D 83.228 316 46 4 1 309 499548334 499548019 1.340000e-72 283.0
36 TraesCS7B01G076900 chr4D 83.036 112 19 0 2035 2146 481368646 481368757 4.030000e-18 102.0
37 TraesCS7B01G076900 chr5B 97.222 144 4 0 2148 2291 708378966 708379109 6.320000e-61 244.0
38 TraesCS7B01G076900 chr5B 96.528 144 5 0 2148 2291 603638393 603638536 2.940000e-59 239.0
39 TraesCS7B01G076900 chr5B 95.833 144 6 0 2148 2291 246936289 246936432 1.370000e-57 233.0
40 TraesCS7B01G076900 chr5B 83.784 111 16 2 2035 2144 230778877 230778768 1.120000e-18 104.0
41 TraesCS7B01G076900 chr2B 96.528 144 5 0 2148 2291 228981368 228981511 2.940000e-59 239.0
42 TraesCS7B01G076900 chr2B 95.122 41 1 1 379 418 785893173 785893213 1.900000e-06 63.9
43 TraesCS7B01G076900 chr6B 96.503 143 5 0 2149 2291 77996108 77996250 1.060000e-58 237.0
44 TraesCS7B01G076900 chr1B 95.862 145 6 0 2147 2291 523222880 523223024 3.800000e-58 235.0
45 TraesCS7B01G076900 chr1B 94.444 144 8 0 2148 2291 306403075 306402932 2.960000e-54 222.0
46 TraesCS7B01G076900 chr1B 97.143 35 1 0 384 418 618005914 618005948 2.460000e-05 60.2
47 TraesCS7B01G076900 chr2D 95.205 146 7 0 2146 2291 15019069 15019214 4.920000e-57 231.0
48 TraesCS7B01G076900 chr3B 91.463 164 10 4 2131 2291 427096789 427096951 2.960000e-54 222.0
49 TraesCS7B01G076900 chr3B 89.423 104 10 1 2036 2139 64167997 64168099 1.850000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G076900 chr7B 86646882 86649172 2290 True 4231.000000 4231 100.0000 1 2291 1 chr7B.!!$R1 2290
1 TraesCS7B01G076900 chr7B 86636354 86639758 3404 True 801.500000 1482 88.2340 294 1902 2 chr7B.!!$R2 1608
2 TraesCS7B01G076900 chr7D 124830035 124833732 3697 True 1059.333333 1280 86.6590 323 2138 3 chr7D.!!$R9 1815
3 TraesCS7B01G076900 chr7D 124603852 124604739 887 True 913.000000 913 85.7450 357 1242 1 chr7D.!!$R2 885
4 TraesCS7B01G076900 chr7D 124650045 124650654 609 True 826.000000 826 90.8950 1003 1628 1 chr7D.!!$R3 625
5 TraesCS7B01G076900 chr7D 124643849 124644833 984 True 547.000000 983 89.2640 306 1306 2 chr7D.!!$R8 1000
6 TraesCS7B01G076900 chr7D 124594408 124596453 2045 True 459.500000 516 84.3450 627 1616 2 chr7D.!!$R7 989
7 TraesCS7B01G076900 chr7A 127001263 127005265 4002 True 498.600000 911 88.2390 357 2008 5 chr7A.!!$R1 1651
8 TraesCS7B01G076900 chr7A 127038521 127043656 5135 True 450.800000 989 87.3488 357 2008 5 chr7A.!!$R2 1651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.097674 CAGCACCTTGTATCTTGCGC 59.902 55.0 0.0 0.0 40.04 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1326 10189 0.242825 CGTACTCCACACACCATCGT 59.757 55.0 0.0 0.0 0.0 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.042843 CCAGGGCGAGAGGGTAGT 60.043 66.667 0.00 0.00 0.00 2.73
22 23 2.042843 AGGGCGAGAGGGTAGTGG 60.043 66.667 0.00 0.00 0.00 4.00
23 24 3.851128 GGGCGAGAGGGTAGTGGC 61.851 72.222 0.00 0.00 0.00 5.01
24 25 3.851128 GGCGAGAGGGTAGTGGCC 61.851 72.222 0.00 0.00 0.00 5.36
31 32 2.901042 GGGTAGTGGCCCTCTTCG 59.099 66.667 0.00 0.00 45.22 3.79
32 33 2.732619 GGGTAGTGGCCCTCTTCGG 61.733 68.421 0.00 0.00 45.22 4.30
33 34 1.684734 GGTAGTGGCCCTCTTCGGA 60.685 63.158 0.00 0.00 33.16 4.55
34 35 1.677637 GGTAGTGGCCCTCTTCGGAG 61.678 65.000 0.00 0.00 41.50 4.63
42 43 2.492090 CTCTTCGGAGGCAGACGG 59.508 66.667 0.00 0.00 38.36 4.79
43 44 2.035155 TCTTCGGAGGCAGACGGA 59.965 61.111 0.00 0.00 0.00 4.69
44 45 1.379977 TCTTCGGAGGCAGACGGAT 60.380 57.895 0.00 0.00 0.00 4.18
45 46 1.227089 CTTCGGAGGCAGACGGATG 60.227 63.158 0.00 0.00 0.00 3.51
46 47 2.635229 CTTCGGAGGCAGACGGATGG 62.635 65.000 0.00 0.00 0.00 3.51
47 48 4.899239 CGGAGGCAGACGGATGGC 62.899 72.222 7.49 7.49 45.63 4.40
51 52 4.864334 GGCAGACGGATGGCAGGG 62.864 72.222 10.24 0.00 44.71 4.45
63 64 3.723348 GCAGGGCGGTCGTGTTTC 61.723 66.667 4.09 0.00 34.05 2.78
65 66 4.675029 AGGGCGGTCGTGTTTCGG 62.675 66.667 0.00 0.00 40.32 4.30
67 68 3.408851 GGCGGTCGTGTTTCGGTC 61.409 66.667 0.00 0.00 40.32 4.79
68 69 3.408851 GCGGTCGTGTTTCGGTCC 61.409 66.667 0.00 0.00 40.32 4.46
70 71 2.019951 CGGTCGTGTTTCGGTCCTG 61.020 63.158 0.00 0.00 40.32 3.86
74 75 0.460722 TCGTGTTTCGGTCCTGTGAA 59.539 50.000 0.00 0.00 40.32 3.18
77 78 1.597663 GTGTTTCGGTCCTGTGAAGTG 59.402 52.381 0.00 0.00 0.00 3.16
79 80 0.107831 TTTCGGTCCTGTGAAGTGGG 59.892 55.000 0.00 0.00 0.00 4.61
84 85 0.954452 GTCCTGTGAAGTGGGCTTTG 59.046 55.000 0.00 0.00 34.61 2.77
85 86 0.843309 TCCTGTGAAGTGGGCTTTGA 59.157 50.000 0.00 0.00 34.61 2.69
87 88 1.242076 CTGTGAAGTGGGCTTTGAGG 58.758 55.000 0.00 0.00 34.61 3.86
88 89 0.823356 TGTGAAGTGGGCTTTGAGGC 60.823 55.000 0.00 0.00 40.51 4.70
89 90 0.538287 GTGAAGTGGGCTTTGAGGCT 60.538 55.000 0.00 0.00 41.09 4.58
91 92 1.871126 GAAGTGGGCTTTGAGGCTGC 61.871 60.000 0.00 0.00 41.09 5.25
92 93 3.376918 GTGGGCTTTGAGGCTGCC 61.377 66.667 11.65 11.65 45.42 4.85
103 104 2.825836 GGCTGCCCTCCGATGTTG 60.826 66.667 7.66 0.00 0.00 3.33
104 105 2.825836 GCTGCCCTCCGATGTTGG 60.826 66.667 0.00 0.00 0.00 3.77
112 113 4.473520 CCGATGTTGGCGGCTCCT 62.474 66.667 11.43 0.00 42.55 3.69
113 114 2.436646 CGATGTTGGCGGCTCCTT 60.437 61.111 11.43 0.00 35.26 3.36
114 115 2.464459 CGATGTTGGCGGCTCCTTC 61.464 63.158 11.43 7.32 35.26 3.46
116 117 0.678048 GATGTTGGCGGCTCCTTCTT 60.678 55.000 11.43 0.00 35.26 2.52
119 120 0.889186 GTTGGCGGCTCCTTCTTCAA 60.889 55.000 11.43 0.00 35.26 2.69
120 121 0.889186 TTGGCGGCTCCTTCTTCAAC 60.889 55.000 11.43 0.00 35.26 3.18
124 125 1.197949 GCGGCTCCTTCTTCAACTTTC 59.802 52.381 0.00 0.00 0.00 2.62
127 128 3.058639 CGGCTCCTTCTTCAACTTTCTTG 60.059 47.826 0.00 0.00 0.00 3.02
129 130 4.261363 GGCTCCTTCTTCAACTTTCTTGTG 60.261 45.833 0.00 0.00 0.00 3.33
131 132 5.163612 GCTCCTTCTTCAACTTTCTTGTGTT 60.164 40.000 0.00 0.00 0.00 3.32
133 134 4.800471 CCTTCTTCAACTTTCTTGTGTTGC 59.200 41.667 0.00 0.00 42.11 4.17
134 135 5.393461 CCTTCTTCAACTTTCTTGTGTTGCT 60.393 40.000 0.00 0.00 42.11 3.91
136 137 5.401550 TCTTCAACTTTCTTGTGTTGCTTG 58.598 37.500 0.00 0.00 42.11 4.01
137 138 3.510719 TCAACTTTCTTGTGTTGCTTGC 58.489 40.909 0.00 0.00 42.11 4.01
142 143 3.591196 TTCTTGTGTTGCTTGCTTTGT 57.409 38.095 0.00 0.00 0.00 2.83
144 145 3.252400 TCTTGTGTTGCTTGCTTTGTTG 58.748 40.909 0.00 0.00 0.00 3.33
145 146 2.739885 TGTGTTGCTTGCTTTGTTGT 57.260 40.000 0.00 0.00 0.00 3.32
146 147 2.605030 TGTGTTGCTTGCTTTGTTGTC 58.395 42.857 0.00 0.00 0.00 3.18
147 148 2.230992 TGTGTTGCTTGCTTTGTTGTCT 59.769 40.909 0.00 0.00 0.00 3.41
148 149 2.599973 GTGTTGCTTGCTTTGTTGTCTG 59.400 45.455 0.00 0.00 0.00 3.51
149 150 2.195922 GTTGCTTGCTTTGTTGTCTGG 58.804 47.619 0.00 0.00 0.00 3.86
152 153 2.195922 GCTTGCTTTGTTGTCTGGTTG 58.804 47.619 0.00 0.00 0.00 3.77
153 154 2.417243 GCTTGCTTTGTTGTCTGGTTGT 60.417 45.455 0.00 0.00 0.00 3.32
154 155 3.181491 GCTTGCTTTGTTGTCTGGTTGTA 60.181 43.478 0.00 0.00 0.00 2.41
156 157 4.630894 TGCTTTGTTGTCTGGTTGTAAG 57.369 40.909 0.00 0.00 0.00 2.34
157 158 3.181491 TGCTTTGTTGTCTGGTTGTAAGC 60.181 43.478 0.00 0.00 37.76 3.09
162 163 2.169832 TGTCTGGTTGTAAGCTGCTC 57.830 50.000 1.00 0.00 0.00 4.26
164 165 1.055849 TCTGGTTGTAAGCTGCTCCA 58.944 50.000 1.00 4.62 0.00 3.86
165 166 1.002430 TCTGGTTGTAAGCTGCTCCAG 59.998 52.381 21.94 21.94 42.36 3.86
179 180 2.012673 GCTCCAGCACCTTGTATCTTG 58.987 52.381 0.00 0.00 41.59 3.02
180 181 2.012673 CTCCAGCACCTTGTATCTTGC 58.987 52.381 0.00 0.00 35.08 4.01
181 182 0.729116 CCAGCACCTTGTATCTTGCG 59.271 55.000 0.00 0.00 40.04 4.85
182 183 0.097674 CAGCACCTTGTATCTTGCGC 59.902 55.000 0.00 0.00 40.04 6.09
183 184 1.026718 AGCACCTTGTATCTTGCGCC 61.027 55.000 4.18 0.00 40.04 6.53
184 185 1.715585 CACCTTGTATCTTGCGCCG 59.284 57.895 4.18 0.00 0.00 6.46
188 189 1.202031 CCTTGTATCTTGCGCCGTTTC 60.202 52.381 4.18 0.00 0.00 2.78
189 190 1.732259 CTTGTATCTTGCGCCGTTTCT 59.268 47.619 4.18 0.00 0.00 2.52
190 191 1.803334 TGTATCTTGCGCCGTTTCTT 58.197 45.000 4.18 0.00 0.00 2.52
191 192 2.147958 TGTATCTTGCGCCGTTTCTTT 58.852 42.857 4.18 0.00 0.00 2.52
193 194 2.793278 ATCTTGCGCCGTTTCTTTTT 57.207 40.000 4.18 0.00 0.00 1.94
195 196 1.128513 CTTGCGCCGTTTCTTTTTCC 58.871 50.000 4.18 0.00 0.00 3.13
196 197 0.741915 TTGCGCCGTTTCTTTTTCCT 59.258 45.000 4.18 0.00 0.00 3.36
199 200 1.535226 GCGCCGTTTCTTTTTCCTGTT 60.535 47.619 0.00 0.00 0.00 3.16
200 201 2.116366 CGCCGTTTCTTTTTCCTGTTG 58.884 47.619 0.00 0.00 0.00 3.33
202 203 3.242804 CGCCGTTTCTTTTTCCTGTTGTA 60.243 43.478 0.00 0.00 0.00 2.41
204 205 4.679654 GCCGTTTCTTTTTCCTGTTGTATG 59.320 41.667 0.00 0.00 0.00 2.39
207 208 6.016943 CCGTTTCTTTTTCCTGTTGTATGGTA 60.017 38.462 0.00 0.00 0.00 3.25
209 210 7.377662 CGTTTCTTTTTCCTGTTGTATGGTAAC 59.622 37.037 0.00 0.00 0.00 2.50
211 212 7.504924 TCTTTTTCCTGTTGTATGGTAACTG 57.495 36.000 0.00 0.00 37.61 3.16
212 213 5.699097 TTTTCCTGTTGTATGGTAACTGC 57.301 39.130 0.00 0.00 37.61 4.40
213 214 3.343941 TCCTGTTGTATGGTAACTGCC 57.656 47.619 0.00 0.00 37.61 4.85
215 216 2.026262 CCTGTTGTATGGTAACTGCCCT 60.026 50.000 0.00 0.00 37.61 5.19
217 218 3.417101 TGTTGTATGGTAACTGCCCTTG 58.583 45.455 0.00 0.00 37.61 3.61
222 223 5.433526 TGTATGGTAACTGCCCTTGTAATC 58.566 41.667 0.00 0.00 37.61 1.75
228 229 2.269940 ACTGCCCTTGTAATCCTGACT 58.730 47.619 0.00 0.00 0.00 3.41
229 230 2.026822 ACTGCCCTTGTAATCCTGACTG 60.027 50.000 0.00 0.00 0.00 3.51
232 233 2.290960 GCCCTTGTAATCCTGACTGGTT 60.291 50.000 0.00 0.00 37.07 3.67
233 234 3.347216 CCCTTGTAATCCTGACTGGTTG 58.653 50.000 0.00 0.00 37.07 3.77
234 235 3.009033 CCCTTGTAATCCTGACTGGTTGA 59.991 47.826 0.00 0.00 37.07 3.18
235 236 4.324563 CCCTTGTAATCCTGACTGGTTGAT 60.325 45.833 0.00 0.00 37.07 2.57
237 238 4.220693 TGTAATCCTGACTGGTTGATGG 57.779 45.455 0.00 0.00 37.07 3.51
238 239 3.587061 TGTAATCCTGACTGGTTGATGGT 59.413 43.478 0.00 0.00 37.07 3.55
242 243 3.221771 TCCTGACTGGTTGATGGTTTTG 58.778 45.455 0.00 0.00 37.07 2.44
243 244 2.958355 CCTGACTGGTTGATGGTTTTGT 59.042 45.455 0.00 0.00 0.00 2.83
245 246 4.582656 CCTGACTGGTTGATGGTTTTGTTA 59.417 41.667 0.00 0.00 0.00 2.41
246 247 5.068460 CCTGACTGGTTGATGGTTTTGTTAA 59.932 40.000 0.00 0.00 0.00 2.01
247 248 6.239289 CCTGACTGGTTGATGGTTTTGTTAAT 60.239 38.462 0.00 0.00 0.00 1.40
248 249 7.118496 TGACTGGTTGATGGTTTTGTTAATT 57.882 32.000 0.00 0.00 0.00 1.40
249 250 7.206687 TGACTGGTTGATGGTTTTGTTAATTC 58.793 34.615 0.00 0.00 0.00 2.17
252 253 8.043710 ACTGGTTGATGGTTTTGTTAATTCAAA 58.956 29.630 0.00 0.00 35.83 2.69
254 255 8.043710 TGGTTGATGGTTTTGTTAATTCAAAGT 58.956 29.630 0.00 0.00 38.32 2.66
256 257 9.701355 GTTGATGGTTTTGTTAATTCAAAGTTG 57.299 29.630 0.00 0.00 38.32 3.16
259 260 7.835634 TGGTTTTGTTAATTCAAAGTTGGAC 57.164 32.000 0.00 0.00 38.32 4.02
262 263 9.244799 GGTTTTGTTAATTCAAAGTTGGACTAG 57.755 33.333 0.00 0.00 38.32 2.57
263 264 9.244799 GTTTTGTTAATTCAAAGTTGGACTAGG 57.755 33.333 0.00 0.00 38.32 3.02
266 267 8.161699 TGTTAATTCAAAGTTGGACTAGGTTC 57.838 34.615 0.00 0.00 0.00 3.62
267 268 5.941948 AATTCAAAGTTGGACTAGGTTCG 57.058 39.130 0.00 0.00 0.00 3.95
268 269 3.396260 TCAAAGTTGGACTAGGTTCGG 57.604 47.619 0.00 0.00 0.00 4.30
269 270 2.038033 TCAAAGTTGGACTAGGTTCGGG 59.962 50.000 0.00 0.00 0.00 5.14
271 272 1.078637 GTTGGACTAGGTTCGGGCC 60.079 63.158 0.00 0.00 0.00 5.80
272 273 1.229400 TTGGACTAGGTTCGGGCCT 60.229 57.895 0.84 4.25 42.43 5.19
274 275 1.262640 TGGACTAGGTTCGGGCCTTC 61.263 60.000 0.84 0.00 39.94 3.46
278 279 2.017559 CTAGGTTCGGGCCTTCCTCG 62.018 65.000 12.89 0.00 39.94 4.63
279 280 4.468689 GGTTCGGGCCTTCCTCGG 62.469 72.222 0.84 0.00 0.00 4.63
280 281 4.468689 GTTCGGGCCTTCCTCGGG 62.469 72.222 0.84 0.00 0.00 5.14
295 296 2.436115 GGGCGCGGCTTAGTCTTT 60.436 61.111 32.30 0.00 0.00 2.52
296 297 2.038837 GGGCGCGGCTTAGTCTTTT 61.039 57.895 32.30 0.00 0.00 2.27
297 298 1.424240 GGCGCGGCTTAGTCTTTTC 59.576 57.895 27.05 0.00 0.00 2.29
298 299 1.019805 GGCGCGGCTTAGTCTTTTCT 61.020 55.000 27.05 0.00 0.00 2.52
425 1130 8.587952 AAAATATAAGACGTTTTTGCAAGCTT 57.412 26.923 0.00 0.00 0.00 3.74
514 1483 6.019108 AGGATTGAAAAGGATTTAGCCAAGT 58.981 36.000 0.00 0.00 37.28 3.16
531 1500 4.318831 GCCAAGTAAGTCGAAGTGTTGAAG 60.319 45.833 0.00 0.00 0.00 3.02
757 3257 0.252284 CCCCACTACTGACCCACTCT 60.252 60.000 0.00 0.00 0.00 3.24
937 6736 0.543883 TCACCCAGAGAGAAGCAGCT 60.544 55.000 0.00 0.00 0.00 4.24
975 6774 1.091771 CCAAGGCTAGCACATCGTGG 61.092 60.000 18.24 12.66 33.64 4.94
976 6775 0.391661 CAAGGCTAGCACATCGTGGT 60.392 55.000 18.24 4.09 46.27 4.16
1309 10172 2.695561 TCAGGCTGGGCATGAGTTA 58.304 52.632 15.73 0.00 44.36 2.24
1326 10189 6.280855 TGAGTTAATCTGCTGCTGTAACTA 57.719 37.500 16.78 7.92 35.64 2.24
1327 10190 6.100004 TGAGTTAATCTGCTGCTGTAACTAC 58.900 40.000 16.78 12.73 35.64 2.73
1344 10224 2.490903 ACTACGATGGTGTGTGGAGTAC 59.509 50.000 0.00 0.00 0.00 2.73
1375 10255 3.541242 TTCCCCAAATGATGTGGAGTT 57.459 42.857 2.38 0.00 36.88 3.01
1396 10276 6.275335 AGTTTGAGATGGATGTTTGTGTTTG 58.725 36.000 0.00 0.00 0.00 2.93
1410 10290 0.181587 TGTTTGCGGAGTTCTTGGGA 59.818 50.000 0.00 0.00 0.00 4.37
1438 10318 1.179174 GCAGTGGTTTCCCAAGGGTC 61.179 60.000 4.80 0.00 44.15 4.46
1444 10324 2.206223 GGTTTCCCAAGGGTCTCCTAT 58.794 52.381 4.80 0.00 44.07 2.57
1445 10325 3.246572 TGGTTTCCCAAGGGTCTCCTATA 60.247 47.826 4.80 0.00 44.07 1.31
1486 10366 2.807967 CGAACTCTGTGGAGATTTGCAA 59.192 45.455 0.00 0.00 41.86 4.08
1536 10416 4.866486 CCAAGCTCTGTTGATTATTTTGCC 59.134 41.667 0.00 0.00 0.00 4.52
1548 10428 5.893255 TGATTATTTTGCCTATGTTCTGCCT 59.107 36.000 0.00 0.00 0.00 4.75
1587 10467 2.166870 ACGTCGGTGCATTTCCTGTATA 59.833 45.455 0.00 0.00 0.00 1.47
1662 10542 2.308570 ACTTGCATAATGTGACCCCAGA 59.691 45.455 0.00 0.00 0.00 3.86
1663 10543 3.053395 ACTTGCATAATGTGACCCCAGAT 60.053 43.478 0.00 0.00 0.00 2.90
1664 10544 3.668141 TGCATAATGTGACCCCAGATT 57.332 42.857 0.00 0.00 39.30 2.40
1685 10565 8.664798 CAGATTGAATATTAAGAAACCACGACA 58.335 33.333 0.00 0.00 0.00 4.35
1691 10571 7.972832 ATATTAAGAAACCACGACAAACTGA 57.027 32.000 0.00 0.00 0.00 3.41
1693 10573 3.536956 AGAAACCACGACAAACTGAGA 57.463 42.857 0.00 0.00 0.00 3.27
1704 10584 4.511454 CGACAAACTGAGATGAAGGTTTCA 59.489 41.667 0.00 0.00 45.01 2.69
1750 10637 2.496470 AGTTAACGGGACACTCTCCATC 59.504 50.000 0.00 0.00 41.63 3.51
1756 10643 1.691434 GGGACACTCTCCATCCAGATC 59.309 57.143 0.00 0.00 41.63 2.75
1773 10660 7.353414 TCCAGATCCAACTCTTTAGTATCAG 57.647 40.000 0.00 0.00 33.75 2.90
1786 10673 9.243637 CTCTTTAGTATCAGAGCTATTGACAAC 57.756 37.037 2.73 5.16 30.45 3.32
1832 10732 3.181465 CGGGGTAAACTGACTCATGCTAT 60.181 47.826 0.00 0.00 0.00 2.97
1833 10733 4.130118 GGGGTAAACTGACTCATGCTATG 58.870 47.826 0.00 0.00 0.00 2.23
1834 10734 4.384208 GGGGTAAACTGACTCATGCTATGT 60.384 45.833 0.00 0.00 0.00 2.29
1836 10736 5.419542 GGTAAACTGACTCATGCTATGTCA 58.580 41.667 9.20 9.20 38.24 3.58
1837 10737 5.292101 GGTAAACTGACTCATGCTATGTCAC 59.708 44.000 6.58 0.00 36.03 3.67
1848 10754 1.724654 GCTATGTCACAAACGTTGGCG 60.725 52.381 0.00 0.00 44.93 5.69
1894 10801 5.648092 AGTATTGTAAGCTAGTTTTGCTGGG 59.352 40.000 0.00 0.00 41.03 4.45
1902 10809 3.821033 GCTAGTTTTGCTGGGAGAGAAAA 59.179 43.478 0.00 0.00 0.00 2.29
1903 10810 4.460731 GCTAGTTTTGCTGGGAGAGAAAAT 59.539 41.667 0.00 0.00 28.45 1.82
1904 10811 4.861102 AGTTTTGCTGGGAGAGAAAATG 57.139 40.909 0.00 0.00 28.45 2.32
1905 10812 3.575687 AGTTTTGCTGGGAGAGAAAATGG 59.424 43.478 0.00 0.00 28.45 3.16
1906 10813 3.524095 TTTGCTGGGAGAGAAAATGGA 57.476 42.857 0.00 0.00 0.00 3.41
1907 10814 3.524095 TTGCTGGGAGAGAAAATGGAA 57.476 42.857 0.00 0.00 0.00 3.53
1908 10815 3.524095 TGCTGGGAGAGAAAATGGAAA 57.476 42.857 0.00 0.00 0.00 3.13
1909 10816 3.157087 TGCTGGGAGAGAAAATGGAAAC 58.843 45.455 0.00 0.00 0.00 2.78
1910 10817 2.493675 GCTGGGAGAGAAAATGGAAACC 59.506 50.000 0.00 0.00 0.00 3.27
1911 10818 2.749621 CTGGGAGAGAAAATGGAAACCG 59.250 50.000 0.00 0.00 0.00 4.44
1912 10819 2.373836 TGGGAGAGAAAATGGAAACCGA 59.626 45.455 0.00 0.00 0.00 4.69
1913 10820 3.181438 TGGGAGAGAAAATGGAAACCGAA 60.181 43.478 0.00 0.00 0.00 4.30
1914 10821 3.440522 GGGAGAGAAAATGGAAACCGAAG 59.559 47.826 0.00 0.00 0.00 3.79
1915 10822 4.324267 GGAGAGAAAATGGAAACCGAAGA 58.676 43.478 0.00 0.00 0.00 2.87
1916 10823 4.944317 GGAGAGAAAATGGAAACCGAAGAT 59.056 41.667 0.00 0.00 0.00 2.40
1917 10824 5.163713 GGAGAGAAAATGGAAACCGAAGATG 60.164 44.000 0.00 0.00 0.00 2.90
1918 10825 4.702131 AGAGAAAATGGAAACCGAAGATGG 59.298 41.667 0.00 0.00 0.00 3.51
1919 10826 4.662278 AGAAAATGGAAACCGAAGATGGA 58.338 39.130 0.00 0.00 0.00 3.41
1920 10827 4.702131 AGAAAATGGAAACCGAAGATGGAG 59.298 41.667 0.00 0.00 0.00 3.86
1921 10828 4.301072 AAATGGAAACCGAAGATGGAGA 57.699 40.909 0.00 0.00 0.00 3.71
1922 10829 4.510167 AATGGAAACCGAAGATGGAGAT 57.490 40.909 0.00 0.00 0.00 2.75
1923 10830 5.630415 AATGGAAACCGAAGATGGAGATA 57.370 39.130 0.00 0.00 0.00 1.98
1924 10831 5.832539 ATGGAAACCGAAGATGGAGATAT 57.167 39.130 0.00 0.00 0.00 1.63
1925 10832 5.630415 TGGAAACCGAAGATGGAGATATT 57.370 39.130 0.00 0.00 0.00 1.28
1926 10833 6.740944 TGGAAACCGAAGATGGAGATATTA 57.259 37.500 0.00 0.00 0.00 0.98
1927 10834 7.131907 TGGAAACCGAAGATGGAGATATTAA 57.868 36.000 0.00 0.00 0.00 1.40
1928 10835 7.745717 TGGAAACCGAAGATGGAGATATTAAT 58.254 34.615 0.00 0.00 0.00 1.40
1929 10836 8.876181 TGGAAACCGAAGATGGAGATATTAATA 58.124 33.333 0.00 0.00 0.00 0.98
1930 10837 9.892130 GGAAACCGAAGATGGAGATATTAATAT 57.108 33.333 7.72 7.72 0.00 1.28
1974 10881 1.853963 ATTGTCTCCCGTGTCTAGCT 58.146 50.000 0.00 0.00 0.00 3.32
1976 10883 1.174783 TGTCTCCCGTGTCTAGCTTC 58.825 55.000 0.00 0.00 0.00 3.86
1977 10884 1.271982 TGTCTCCCGTGTCTAGCTTCT 60.272 52.381 0.00 0.00 0.00 2.85
1978 10892 1.402613 GTCTCCCGTGTCTAGCTTCTC 59.597 57.143 0.00 0.00 0.00 2.87
1982 10896 1.634702 CCGTGTCTAGCTTCTCTTGC 58.365 55.000 0.00 0.00 0.00 4.01
1983 10897 1.263776 CGTGTCTAGCTTCTCTTGCG 58.736 55.000 0.00 0.00 35.28 4.85
1984 10898 1.135660 CGTGTCTAGCTTCTCTTGCGA 60.136 52.381 0.00 0.00 35.28 5.10
1988 10902 1.478105 TCTAGCTTCTCTTGCGATGCA 59.522 47.619 0.00 0.00 36.76 3.96
1989 10903 2.094026 TCTAGCTTCTCTTGCGATGCAA 60.094 45.455 3.97 3.97 46.80 4.08
2003 10917 6.471976 TGCGATGCAAGAGTAATAATGATC 57.528 37.500 0.00 0.00 34.76 2.92
2004 10918 5.990996 TGCGATGCAAGAGTAATAATGATCA 59.009 36.000 0.00 0.00 34.76 2.92
2009 10923 8.913487 ATGCAAGAGTAATAATGATCATGTGA 57.087 30.769 9.46 0.00 0.00 3.58
2010 10924 8.913487 TGCAAGAGTAATAATGATCATGTGAT 57.087 30.769 9.46 0.56 37.51 3.06
2024 10938 7.432869 TGATCATGTGATATCATGTTGTCGTA 58.567 34.615 9.02 0.00 43.70 3.43
2025 10939 7.925483 TGATCATGTGATATCATGTTGTCGTAA 59.075 33.333 9.02 0.00 43.70 3.18
2026 10940 8.661352 ATCATGTGATATCATGTTGTCGTAAA 57.339 30.769 9.02 0.00 43.70 2.01
2028 10942 9.757227 TCATGTGATATCATGTTGTCGTAAATA 57.243 29.630 9.02 0.00 43.70 1.40
2037 10951 9.997482 ATCATGTTGTCGTAAATATTTGGTTAC 57.003 29.630 11.05 0.13 0.00 2.50
2038 10952 9.221933 TCATGTTGTCGTAAATATTTGGTTACT 57.778 29.630 11.05 0.00 0.00 2.24
2039 10953 9.485591 CATGTTGTCGTAAATATTTGGTTACTC 57.514 33.333 11.05 0.00 0.00 2.59
2040 10954 8.031848 TGTTGTCGTAAATATTTGGTTACTCC 57.968 34.615 11.05 0.00 0.00 3.85
2041 10955 7.119553 TGTTGTCGTAAATATTTGGTTACTCCC 59.880 37.037 11.05 0.00 34.77 4.30
2042 10956 6.949715 TGTCGTAAATATTTGGTTACTCCCT 58.050 36.000 11.05 0.00 34.77 4.20
2043 10957 7.043565 TGTCGTAAATATTTGGTTACTCCCTC 58.956 38.462 11.05 0.00 34.77 4.30
2044 10958 6.481313 GTCGTAAATATTTGGTTACTCCCTCC 59.519 42.308 11.05 0.00 34.77 4.30
2045 10959 5.464389 CGTAAATATTTGGTTACTCCCTCCG 59.536 44.000 11.05 0.00 34.77 4.63
2046 10960 5.446260 AAATATTTGGTTACTCCCTCCGT 57.554 39.130 0.00 0.00 34.77 4.69
2047 10961 5.446260 AATATTTGGTTACTCCCTCCGTT 57.554 39.130 0.00 0.00 34.77 4.44
2048 10962 2.845363 TTTGGTTACTCCCTCCGTTC 57.155 50.000 0.00 0.00 34.77 3.95
2049 10963 1.719529 TTGGTTACTCCCTCCGTTCA 58.280 50.000 0.00 0.00 34.77 3.18
2051 10965 2.262637 TGGTTACTCCCTCCGTTCATT 58.737 47.619 0.00 0.00 34.77 2.57
2053 10967 3.073356 TGGTTACTCCCTCCGTTCATTTT 59.927 43.478 0.00 0.00 34.77 1.82
2054 10968 4.077108 GGTTACTCCCTCCGTTCATTTTT 58.923 43.478 0.00 0.00 0.00 1.94
2056 10970 3.223674 ACTCCCTCCGTTCATTTTTGT 57.776 42.857 0.00 0.00 0.00 2.83
2057 10971 4.360951 ACTCCCTCCGTTCATTTTTGTA 57.639 40.909 0.00 0.00 0.00 2.41
2058 10972 4.721132 ACTCCCTCCGTTCATTTTTGTAA 58.279 39.130 0.00 0.00 0.00 2.41
2061 10975 4.758165 TCCCTCCGTTCATTTTTGTAAGAC 59.242 41.667 0.00 0.00 0.00 3.01
2062 10976 4.517453 CCCTCCGTTCATTTTTGTAAGACA 59.483 41.667 0.00 0.00 0.00 3.41
2066 10980 7.651704 CCTCCGTTCATTTTTGTAAGACATTTT 59.348 33.333 0.00 0.00 0.00 1.82
2067 10981 9.672086 CTCCGTTCATTTTTGTAAGACATTTTA 57.328 29.630 0.00 0.00 0.00 1.52
2069 10983 9.672086 CCGTTCATTTTTGTAAGACATTTTAGA 57.328 29.630 0.00 0.00 0.00 2.10
2098 11012 8.836268 ATAAAACAACACCTATAACAGTTCGA 57.164 30.769 0.00 0.00 0.00 3.71
2100 11014 7.739498 AAACAACACCTATAACAGTTCGATT 57.261 32.000 0.00 0.00 0.00 3.34
2101 11015 7.739498 AACAACACCTATAACAGTTCGATTT 57.261 32.000 0.00 0.00 0.00 2.17
2102 11016 7.360575 ACAACACCTATAACAGTTCGATTTC 57.639 36.000 0.00 0.00 0.00 2.17
2103 11017 6.932400 ACAACACCTATAACAGTTCGATTTCA 59.068 34.615 0.00 0.00 0.00 2.69
2104 11018 7.117812 ACAACACCTATAACAGTTCGATTTCAG 59.882 37.037 0.00 0.00 0.00 3.02
2105 11019 6.698380 ACACCTATAACAGTTCGATTTCAGT 58.302 36.000 0.00 0.00 0.00 3.41
2106 11020 7.159372 ACACCTATAACAGTTCGATTTCAGTT 58.841 34.615 0.00 0.00 0.00 3.16
2107 11021 7.117812 ACACCTATAACAGTTCGATTTCAGTTG 59.882 37.037 0.00 0.00 0.00 3.16
2108 11022 7.117812 CACCTATAACAGTTCGATTTCAGTTGT 59.882 37.037 0.00 0.00 0.00 3.32
2109 11023 7.331193 ACCTATAACAGTTCGATTTCAGTTGTC 59.669 37.037 0.00 0.00 0.00 3.18
2110 11024 7.545965 CCTATAACAGTTCGATTTCAGTTGTCT 59.454 37.037 0.00 0.00 0.00 3.41
2111 11025 7.730364 ATAACAGTTCGATTTCAGTTGTCTT 57.270 32.000 0.00 0.00 0.00 3.01
2112 11026 8.827177 ATAACAGTTCGATTTCAGTTGTCTTA 57.173 30.769 0.00 0.00 0.00 2.10
2113 11027 7.548196 AACAGTTCGATTTCAGTTGTCTTAA 57.452 32.000 0.00 0.00 0.00 1.85
2114 11028 7.548196 ACAGTTCGATTTCAGTTGTCTTAAA 57.452 32.000 0.00 0.00 0.00 1.52
2116 11030 8.070171 ACAGTTCGATTTCAGTTGTCTTAAATG 58.930 33.333 0.00 0.00 30.57 2.32
2117 11031 8.282592 CAGTTCGATTTCAGTTGTCTTAAATGA 58.717 33.333 0.00 0.00 30.57 2.57
2118 11032 8.283291 AGTTCGATTTCAGTTGTCTTAAATGAC 58.717 33.333 0.00 0.00 37.47 3.06
2119 11033 7.962964 TCGATTTCAGTTGTCTTAAATGACT 57.037 32.000 0.00 0.00 37.79 3.41
2120 11034 8.018677 TCGATTTCAGTTGTCTTAAATGACTC 57.981 34.615 0.00 0.00 37.79 3.36
2121 11035 7.655732 TCGATTTCAGTTGTCTTAAATGACTCA 59.344 33.333 0.00 0.00 37.79 3.41
2122 11036 7.742089 CGATTTCAGTTGTCTTAAATGACTCAC 59.258 37.037 0.00 0.00 37.79 3.51
2123 11037 7.857734 TTTCAGTTGTCTTAAATGACTCACA 57.142 32.000 0.00 0.00 37.79 3.58
2124 11038 7.857734 TTCAGTTGTCTTAAATGACTCACAA 57.142 32.000 0.00 0.00 37.79 3.33
2125 11039 7.857734 TCAGTTGTCTTAAATGACTCACAAA 57.142 32.000 0.00 0.00 37.79 2.83
2126 11040 8.275015 TCAGTTGTCTTAAATGACTCACAAAA 57.725 30.769 0.00 0.00 37.79 2.44
2127 11041 8.397906 TCAGTTGTCTTAAATGACTCACAAAAG 58.602 33.333 0.00 0.00 37.79 2.27
2128 11042 8.184192 CAGTTGTCTTAAATGACTCACAAAAGT 58.816 33.333 0.00 0.00 37.79 2.66
2129 11043 8.184192 AGTTGTCTTAAATGACTCACAAAAGTG 58.816 33.333 0.00 0.00 37.79 3.16
2130 11044 7.857734 TGTCTTAAATGACTCACAAAAGTGA 57.142 32.000 0.00 0.00 37.79 3.41
2131 11045 8.275015 TGTCTTAAATGACTCACAAAAGTGAA 57.725 30.769 0.00 0.00 37.79 3.18
2132 11046 8.181573 TGTCTTAAATGACTCACAAAAGTGAAC 58.818 33.333 0.00 0.00 37.79 3.18
2133 11047 8.181573 GTCTTAAATGACTCACAAAAGTGAACA 58.818 33.333 0.00 4.22 34.39 3.18
2134 11048 8.397906 TCTTAAATGACTCACAAAAGTGAACAG 58.602 33.333 0.00 0.00 32.43 3.16
2135 11049 6.515272 AAATGACTCACAAAAGTGAACAGT 57.485 33.333 0.00 0.88 32.43 3.55
2136 11050 7.624360 AAATGACTCACAAAAGTGAACAGTA 57.376 32.000 0.00 0.00 32.43 2.74
2137 11051 6.851222 ATGACTCACAAAAGTGAACAGTAG 57.149 37.500 0.00 0.00 32.43 2.57
2138 11052 5.116180 TGACTCACAAAAGTGAACAGTAGG 58.884 41.667 0.00 0.00 32.43 3.18
2139 11053 5.105106 TGACTCACAAAAGTGAACAGTAGGA 60.105 40.000 0.00 0.00 32.43 2.94
2140 11054 5.360591 ACTCACAAAAGTGAACAGTAGGAG 58.639 41.667 0.00 0.00 32.43 3.69
2141 11055 5.104900 ACTCACAAAAGTGAACAGTAGGAGT 60.105 40.000 0.00 0.00 32.43 3.85
2142 11056 6.097839 ACTCACAAAAGTGAACAGTAGGAGTA 59.902 38.462 0.00 0.00 32.43 2.59
2143 11057 6.513180 TCACAAAAGTGAACAGTAGGAGTAG 58.487 40.000 0.00 0.00 0.00 2.57
2144 11058 6.097839 TCACAAAAGTGAACAGTAGGAGTAGT 59.902 38.462 0.00 0.00 0.00 2.73
2145 11059 6.761714 CACAAAAGTGAACAGTAGGAGTAGTT 59.238 38.462 0.00 0.00 0.00 2.24
2146 11060 6.761714 ACAAAAGTGAACAGTAGGAGTAGTTG 59.238 38.462 0.00 0.00 0.00 3.16
2147 11061 5.470047 AAGTGAACAGTAGGAGTAGTTGG 57.530 43.478 0.00 0.00 0.00 3.77
2148 11062 4.481072 AGTGAACAGTAGGAGTAGTTGGT 58.519 43.478 0.00 0.00 0.00 3.67
2149 11063 5.638133 AGTGAACAGTAGGAGTAGTTGGTA 58.362 41.667 0.00 0.00 0.00 3.25
2150 11064 5.476254 AGTGAACAGTAGGAGTAGTTGGTAC 59.524 44.000 0.00 0.00 0.00 3.34
2151 11065 5.476254 GTGAACAGTAGGAGTAGTTGGTACT 59.524 44.000 0.00 0.00 45.34 2.73
2159 11073 3.166560 AGTAGTTGGTACTCCCTTCGT 57.833 47.619 0.00 0.00 37.41 3.85
2160 11074 3.504375 AGTAGTTGGTACTCCCTTCGTT 58.496 45.455 0.00 0.00 37.41 3.85
2161 11075 3.899980 AGTAGTTGGTACTCCCTTCGTTT 59.100 43.478 0.00 0.00 37.41 3.60
2162 11076 3.851458 AGTTGGTACTCCCTTCGTTTT 57.149 42.857 0.00 0.00 0.00 2.43
2163 11077 4.160642 AGTTGGTACTCCCTTCGTTTTT 57.839 40.909 0.00 0.00 0.00 1.94
2164 11078 5.294734 AGTTGGTACTCCCTTCGTTTTTA 57.705 39.130 0.00 0.00 0.00 1.52
2165 11079 5.872963 AGTTGGTACTCCCTTCGTTTTTAT 58.127 37.500 0.00 0.00 0.00 1.40
2166 11080 6.301486 AGTTGGTACTCCCTTCGTTTTTATT 58.699 36.000 0.00 0.00 0.00 1.40
2167 11081 6.774170 AGTTGGTACTCCCTTCGTTTTTATTT 59.226 34.615 0.00 0.00 0.00 1.40
2168 11082 7.938490 AGTTGGTACTCCCTTCGTTTTTATTTA 59.062 33.333 0.00 0.00 0.00 1.40
2169 11083 7.910441 TGGTACTCCCTTCGTTTTTATTTAG 57.090 36.000 0.00 0.00 0.00 1.85
2170 11084 6.372381 TGGTACTCCCTTCGTTTTTATTTAGC 59.628 38.462 0.00 0.00 0.00 3.09
2171 11085 6.596888 GGTACTCCCTTCGTTTTTATTTAGCT 59.403 38.462 0.00 0.00 0.00 3.32
2172 11086 6.738832 ACTCCCTTCGTTTTTATTTAGCTC 57.261 37.500 0.00 0.00 0.00 4.09
2173 11087 5.350640 ACTCCCTTCGTTTTTATTTAGCTCG 59.649 40.000 0.00 0.00 0.00 5.03
2174 11088 4.093850 TCCCTTCGTTTTTATTTAGCTCGC 59.906 41.667 0.00 0.00 0.00 5.03
2175 11089 4.142773 CCCTTCGTTTTTATTTAGCTCGCA 60.143 41.667 0.00 0.00 0.00 5.10
2176 11090 5.448632 CCCTTCGTTTTTATTTAGCTCGCAT 60.449 40.000 0.00 0.00 0.00 4.73
2177 11091 6.238266 CCCTTCGTTTTTATTTAGCTCGCATA 60.238 38.462 0.00 0.00 0.00 3.14
2178 11092 7.352739 CCTTCGTTTTTATTTAGCTCGCATAT 58.647 34.615 0.00 0.00 0.00 1.78
2179 11093 7.855904 CCTTCGTTTTTATTTAGCTCGCATATT 59.144 33.333 0.00 0.00 0.00 1.28
2180 11094 9.858247 CTTCGTTTTTATTTAGCTCGCATATTA 57.142 29.630 0.00 0.00 0.00 0.98
2181 11095 9.858247 TTCGTTTTTATTTAGCTCGCATATTAG 57.142 29.630 0.00 0.00 0.00 1.73
2182 11096 8.007716 TCGTTTTTATTTAGCTCGCATATTAGC 58.992 33.333 0.00 0.00 39.08 3.09
2184 11098 9.665264 GTTTTTATTTAGCTCGCATATTAGCTT 57.335 29.630 8.79 0.00 46.82 3.74
2186 11100 9.663904 TTTTATTTAGCTCGCATATTAGCTTTG 57.336 29.630 8.79 0.00 46.82 2.77
2187 11101 5.673337 TTTAGCTCGCATATTAGCTTTGG 57.327 39.130 8.79 0.00 46.82 3.28
2188 11102 3.199880 AGCTCGCATATTAGCTTTGGT 57.800 42.857 0.00 0.00 46.82 3.67
2189 11103 3.545703 AGCTCGCATATTAGCTTTGGTT 58.454 40.909 0.00 0.00 46.82 3.67
2190 11104 4.703897 AGCTCGCATATTAGCTTTGGTTA 58.296 39.130 0.00 0.00 46.82 2.85
2191 11105 5.123227 AGCTCGCATATTAGCTTTGGTTAA 58.877 37.500 0.00 0.00 46.82 2.01
2192 11106 5.588648 AGCTCGCATATTAGCTTTGGTTAAA 59.411 36.000 0.00 0.00 46.82 1.52
2193 11107 5.909610 GCTCGCATATTAGCTTTGGTTAAAG 59.090 40.000 0.00 0.00 44.86 1.85
2194 11108 6.458342 GCTCGCATATTAGCTTTGGTTAAAGT 60.458 38.462 0.00 0.00 44.11 2.66
2195 11109 7.011828 TCGCATATTAGCTTTGGTTAAAGTC 57.988 36.000 0.00 0.00 44.11 3.01
2196 11110 6.596106 TCGCATATTAGCTTTGGTTAAAGTCA 59.404 34.615 0.00 0.00 44.11 3.41
2197 11111 7.119992 TCGCATATTAGCTTTGGTTAAAGTCAA 59.880 33.333 0.00 0.00 44.11 3.18
2198 11112 7.429340 CGCATATTAGCTTTGGTTAAAGTCAAG 59.571 37.037 0.00 0.00 44.11 3.02
2199 11113 7.220875 GCATATTAGCTTTGGTTAAAGTCAAGC 59.779 37.037 0.00 0.00 44.11 4.01
2200 11114 6.901081 ATTAGCTTTGGTTAAAGTCAAGCT 57.099 33.333 9.50 9.50 44.11 3.74
2201 11115 6.709018 TTAGCTTTGGTTAAAGTCAAGCTT 57.291 33.333 9.81 0.00 44.11 3.74
2203 11117 5.351458 AGCTTTGGTTAAAGTCAAGCTTTG 58.649 37.500 0.00 0.00 46.07 2.77
2204 11118 4.025730 GCTTTGGTTAAAGTCAAGCTTTGC 60.026 41.667 0.00 0.00 46.07 3.68
2205 11119 4.727507 TTGGTTAAAGTCAAGCTTTGCA 57.272 36.364 0.00 0.00 46.07 4.08
2206 11120 4.727507 TGGTTAAAGTCAAGCTTTGCAA 57.272 36.364 0.00 0.00 46.07 4.08
2207 11121 5.078411 TGGTTAAAGTCAAGCTTTGCAAA 57.922 34.783 12.14 12.14 46.07 3.68
2208 11122 4.867608 TGGTTAAAGTCAAGCTTTGCAAAC 59.132 37.500 8.05 5.75 46.07 2.93
2209 11123 5.109210 GGTTAAAGTCAAGCTTTGCAAACT 58.891 37.500 8.05 8.04 46.07 2.66
2210 11124 5.580691 GGTTAAAGTCAAGCTTTGCAAACTT 59.419 36.000 8.05 13.45 46.07 2.66
2211 11125 6.092122 GGTTAAAGTCAAGCTTTGCAAACTTT 59.908 34.615 21.77 21.77 46.07 2.66
2212 11126 5.535043 AAAGTCAAGCTTTGCAAACTTTG 57.465 34.783 18.97 18.62 45.00 2.77
2213 11127 4.454728 AGTCAAGCTTTGCAAACTTTGA 57.545 36.364 21.12 21.12 0.00 2.69
2214 11128 5.014808 AGTCAAGCTTTGCAAACTTTGAT 57.985 34.783 24.87 16.17 0.00 2.57
2215 11129 5.045872 AGTCAAGCTTTGCAAACTTTGATC 58.954 37.500 24.87 19.92 0.00 2.92
2216 11130 4.805192 GTCAAGCTTTGCAAACTTTGATCA 59.195 37.500 24.87 9.98 0.00 2.92
2217 11131 5.291614 GTCAAGCTTTGCAAACTTTGATCAA 59.708 36.000 24.87 3.38 0.00 2.57
2218 11132 5.521010 TCAAGCTTTGCAAACTTTGATCAAG 59.479 36.000 21.12 5.87 38.64 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.541713 CTACCCTCTCGCCCTGGC 61.542 72.222 0.00 0.00 37.85 4.85
3 4 2.042843 ACTACCCTCTCGCCCTGG 60.043 66.667 0.00 0.00 0.00 4.45
15 16 1.677637 CTCCGAAGAGGGCCACTACC 61.678 65.000 6.18 0.00 41.52 3.18
17 18 4.356979 CTCCGAAGAGGGCCACTA 57.643 61.111 6.18 0.00 41.52 2.74
25 26 1.388065 ATCCGTCTGCCTCCGAAGAG 61.388 60.000 0.00 0.00 40.09 2.85
29 30 3.147595 CCATCCGTCTGCCTCCGA 61.148 66.667 0.00 0.00 0.00 4.55
31 32 3.746949 CTGCCATCCGTCTGCCTCC 62.747 68.421 0.00 0.00 0.00 4.30
32 33 2.202987 CTGCCATCCGTCTGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
33 34 3.790437 CCTGCCATCCGTCTGCCT 61.790 66.667 0.00 0.00 0.00 4.75
34 35 4.864334 CCCTGCCATCCGTCTGCC 62.864 72.222 0.00 0.00 0.00 4.85
46 47 3.723348 GAAACACGACCGCCCTGC 61.723 66.667 0.00 0.00 0.00 4.85
47 48 3.411351 CGAAACACGACCGCCCTG 61.411 66.667 0.00 0.00 45.77 4.45
49 50 4.974989 ACCGAAACACGACCGCCC 62.975 66.667 0.00 0.00 45.77 6.13
50 51 3.408851 GACCGAAACACGACCGCC 61.409 66.667 0.00 0.00 45.77 6.13
51 52 3.408851 GGACCGAAACACGACCGC 61.409 66.667 0.00 0.00 45.77 5.68
52 53 2.019951 CAGGACCGAAACACGACCG 61.020 63.158 0.00 0.00 45.77 4.79
56 57 0.859232 CTTCACAGGACCGAAACACG 59.141 55.000 0.00 0.00 42.18 4.49
58 59 1.474320 CCACTTCACAGGACCGAAACA 60.474 52.381 0.00 0.00 0.00 2.83
59 60 1.226746 CCACTTCACAGGACCGAAAC 58.773 55.000 0.00 0.00 0.00 2.78
60 61 0.107831 CCCACTTCACAGGACCGAAA 59.892 55.000 0.00 0.00 0.00 3.46
62 63 2.879233 GCCCACTTCACAGGACCGA 61.879 63.158 0.00 0.00 0.00 4.69
63 64 2.358737 GCCCACTTCACAGGACCG 60.359 66.667 0.00 0.00 0.00 4.79
65 66 0.954452 CAAAGCCCACTTCACAGGAC 59.046 55.000 0.00 0.00 34.05 3.85
67 68 1.242076 CTCAAAGCCCACTTCACAGG 58.758 55.000 0.00 0.00 34.05 4.00
68 69 1.242076 CCTCAAAGCCCACTTCACAG 58.758 55.000 0.00 0.00 34.05 3.66
70 71 0.538287 AGCCTCAAAGCCCACTTCAC 60.538 55.000 0.00 0.00 34.05 3.18
74 75 2.282745 GCAGCCTCAAAGCCCACT 60.283 61.111 0.00 0.00 0.00 4.00
79 80 2.753446 GGAGGGCAGCCTCAAAGC 60.753 66.667 12.43 0.00 38.48 3.51
84 85 3.036429 AACATCGGAGGGCAGCCTC 62.036 63.158 12.43 6.87 36.20 4.70
85 86 3.011517 AACATCGGAGGGCAGCCT 61.012 61.111 12.43 0.00 0.00 4.58
87 88 2.825836 CCAACATCGGAGGGCAGC 60.826 66.667 0.00 0.00 0.00 5.25
88 89 2.825836 GCCAACATCGGAGGGCAG 60.826 66.667 0.00 0.00 45.70 4.85
89 90 4.776322 CGCCAACATCGGAGGGCA 62.776 66.667 11.58 0.00 46.75 5.36
96 97 2.436646 AAGGAGCCGCCAACATCG 60.437 61.111 0.00 0.00 40.02 3.84
99 100 1.302511 GAAGAAGGAGCCGCCAACA 60.303 57.895 0.00 0.00 40.02 3.33
100 101 0.889186 TTGAAGAAGGAGCCGCCAAC 60.889 55.000 0.00 0.00 40.02 3.77
103 104 0.606673 AAGTTGAAGAAGGAGCCGCC 60.607 55.000 0.00 0.00 0.00 6.13
104 105 1.197949 GAAAGTTGAAGAAGGAGCCGC 59.802 52.381 0.00 0.00 0.00 6.53
106 107 3.885901 ACAAGAAAGTTGAAGAAGGAGCC 59.114 43.478 0.00 0.00 0.00 4.70
107 108 4.336713 ACACAAGAAAGTTGAAGAAGGAGC 59.663 41.667 0.00 0.00 0.00 4.70
108 109 6.261118 CAACACAAGAAAGTTGAAGAAGGAG 58.739 40.000 0.00 0.00 46.01 3.69
110 111 4.800471 GCAACACAAGAAAGTTGAAGAAGG 59.200 41.667 9.25 0.00 46.01 3.46
111 112 5.644644 AGCAACACAAGAAAGTTGAAGAAG 58.355 37.500 9.25 0.00 46.01 2.85
112 113 5.643379 AGCAACACAAGAAAGTTGAAGAA 57.357 34.783 9.25 0.00 46.01 2.52
113 114 5.401550 CAAGCAACACAAGAAAGTTGAAGA 58.598 37.500 9.25 0.00 46.01 2.87
114 115 4.032104 GCAAGCAACACAAGAAAGTTGAAG 59.968 41.667 9.25 0.05 46.01 3.02
116 117 3.193267 AGCAAGCAACACAAGAAAGTTGA 59.807 39.130 9.25 0.00 46.01 3.18
119 120 3.874392 AAGCAAGCAACACAAGAAAGT 57.126 38.095 0.00 0.00 0.00 2.66
120 121 3.928375 ACAAAGCAAGCAACACAAGAAAG 59.072 39.130 0.00 0.00 0.00 2.62
124 125 2.995258 ACAACAAAGCAAGCAACACAAG 59.005 40.909 0.00 0.00 0.00 3.16
127 128 2.599973 CAGACAACAAAGCAAGCAACAC 59.400 45.455 0.00 0.00 0.00 3.32
129 130 2.195922 CCAGACAACAAAGCAAGCAAC 58.804 47.619 0.00 0.00 0.00 4.17
131 132 1.473258 ACCAGACAACAAAGCAAGCA 58.527 45.000 0.00 0.00 0.00 3.91
133 134 3.508744 ACAACCAGACAACAAAGCAAG 57.491 42.857 0.00 0.00 0.00 4.01
134 135 4.676723 GCTTACAACCAGACAACAAAGCAA 60.677 41.667 0.00 0.00 38.33 3.91
136 137 3.066760 AGCTTACAACCAGACAACAAAGC 59.933 43.478 0.00 0.00 38.64 3.51
137 138 4.601019 CAGCTTACAACCAGACAACAAAG 58.399 43.478 0.00 0.00 0.00 2.77
142 143 2.494059 GAGCAGCTTACAACCAGACAA 58.506 47.619 0.00 0.00 0.00 3.18
144 145 1.270839 TGGAGCAGCTTACAACCAGAC 60.271 52.381 0.00 0.00 0.00 3.51
145 146 1.002430 CTGGAGCAGCTTACAACCAGA 59.998 52.381 18.44 0.00 45.02 3.86
146 147 1.446907 CTGGAGCAGCTTACAACCAG 58.553 55.000 11.66 11.66 38.77 4.00
147 148 3.631453 CTGGAGCAGCTTACAACCA 57.369 52.632 0.00 0.00 0.00 3.67
162 163 0.729116 CGCAAGATACAAGGTGCTGG 59.271 55.000 0.00 0.00 43.02 4.85
164 165 1.026718 GGCGCAAGATACAAGGTGCT 61.027 55.000 10.83 0.00 43.02 4.40
165 166 1.429423 GGCGCAAGATACAAGGTGC 59.571 57.895 10.83 0.00 43.02 5.01
166 167 1.019278 ACGGCGCAAGATACAAGGTG 61.019 55.000 10.83 0.00 43.02 4.00
168 169 0.802494 AAACGGCGCAAGATACAAGG 59.198 50.000 10.83 0.00 43.02 3.61
169 170 1.732259 AGAAACGGCGCAAGATACAAG 59.268 47.619 10.83 0.00 43.02 3.16
179 180 0.030235 ACAGGAAAAAGAAACGGCGC 59.970 50.000 6.90 0.00 0.00 6.53
180 181 2.116366 CAACAGGAAAAAGAAACGGCG 58.884 47.619 4.80 4.80 0.00 6.46
181 182 3.159353 ACAACAGGAAAAAGAAACGGC 57.841 42.857 0.00 0.00 0.00 5.68
182 183 5.219633 CCATACAACAGGAAAAAGAAACGG 58.780 41.667 0.00 0.00 0.00 4.44
183 184 5.827666 ACCATACAACAGGAAAAAGAAACG 58.172 37.500 0.00 0.00 0.00 3.60
184 185 8.410912 AGTTACCATACAACAGGAAAAAGAAAC 58.589 33.333 0.00 0.00 0.00 2.78
188 189 6.149633 GCAGTTACCATACAACAGGAAAAAG 58.850 40.000 0.00 0.00 0.00 2.27
189 190 5.010213 GGCAGTTACCATACAACAGGAAAAA 59.990 40.000 0.00 0.00 0.00 1.94
190 191 4.521256 GGCAGTTACCATACAACAGGAAAA 59.479 41.667 0.00 0.00 0.00 2.29
191 192 4.076394 GGCAGTTACCATACAACAGGAAA 58.924 43.478 0.00 0.00 0.00 3.13
193 194 2.026636 GGGCAGTTACCATACAACAGGA 60.027 50.000 0.00 0.00 0.00 3.86
195 196 3.350219 AGGGCAGTTACCATACAACAG 57.650 47.619 0.00 0.00 0.00 3.16
196 197 3.181438 ACAAGGGCAGTTACCATACAACA 60.181 43.478 0.00 0.00 0.00 3.33
199 200 4.912317 TTACAAGGGCAGTTACCATACA 57.088 40.909 0.00 0.00 0.00 2.29
200 201 4.820173 GGATTACAAGGGCAGTTACCATAC 59.180 45.833 0.00 0.00 0.00 2.39
202 203 3.527665 AGGATTACAAGGGCAGTTACCAT 59.472 43.478 0.00 0.00 0.00 3.55
204 205 3.054655 TCAGGATTACAAGGGCAGTTACC 60.055 47.826 0.00 0.00 0.00 2.85
207 208 2.644798 AGTCAGGATTACAAGGGCAGTT 59.355 45.455 0.00 0.00 0.00 3.16
209 210 2.636830 CAGTCAGGATTACAAGGGCAG 58.363 52.381 0.00 0.00 0.00 4.85
211 212 1.282157 ACCAGTCAGGATTACAAGGGC 59.718 52.381 0.00 0.00 41.22 5.19
212 213 3.009033 TCAACCAGTCAGGATTACAAGGG 59.991 47.826 0.00 0.00 41.22 3.95
213 214 4.286297 TCAACCAGTCAGGATTACAAGG 57.714 45.455 0.00 0.00 41.22 3.61
215 216 4.042809 ACCATCAACCAGTCAGGATTACAA 59.957 41.667 0.00 0.00 41.22 2.41
217 218 4.222124 ACCATCAACCAGTCAGGATTAC 57.778 45.455 0.00 0.00 41.22 1.89
222 223 2.958355 ACAAAACCATCAACCAGTCAGG 59.042 45.455 0.00 0.00 45.67 3.86
228 229 8.043710 ACTTTGAATTAACAAAACCATCAACCA 58.956 29.630 0.00 0.00 38.90 3.67
229 230 8.432110 ACTTTGAATTAACAAAACCATCAACC 57.568 30.769 0.00 0.00 38.90 3.77
232 233 8.260818 TCCAACTTTGAATTAACAAAACCATCA 58.739 29.630 0.00 0.00 38.90 3.07
233 234 8.547894 GTCCAACTTTGAATTAACAAAACCATC 58.452 33.333 0.00 0.00 38.90 3.51
234 235 8.264347 AGTCCAACTTTGAATTAACAAAACCAT 58.736 29.630 0.00 0.00 38.90 3.55
235 236 7.616313 AGTCCAACTTTGAATTAACAAAACCA 58.384 30.769 0.00 0.00 38.90 3.67
237 238 9.244799 CCTAGTCCAACTTTGAATTAACAAAAC 57.755 33.333 0.00 0.00 38.90 2.43
238 239 8.973182 ACCTAGTCCAACTTTGAATTAACAAAA 58.027 29.630 0.00 0.00 38.90 2.44
242 243 7.295930 CGAACCTAGTCCAACTTTGAATTAAC 58.704 38.462 0.00 0.00 0.00 2.01
243 244 6.428771 CCGAACCTAGTCCAACTTTGAATTAA 59.571 38.462 0.00 0.00 0.00 1.40
245 246 4.760204 CCGAACCTAGTCCAACTTTGAATT 59.240 41.667 0.00 0.00 0.00 2.17
246 247 4.324267 CCGAACCTAGTCCAACTTTGAAT 58.676 43.478 0.00 0.00 0.00 2.57
247 248 3.495453 CCCGAACCTAGTCCAACTTTGAA 60.495 47.826 0.00 0.00 0.00 2.69
248 249 2.038033 CCCGAACCTAGTCCAACTTTGA 59.962 50.000 0.00 0.00 0.00 2.69
249 250 2.423577 CCCGAACCTAGTCCAACTTTG 58.576 52.381 0.00 0.00 0.00 2.77
252 253 1.551019 GGCCCGAACCTAGTCCAACT 61.551 60.000 0.00 0.00 0.00 3.16
254 255 0.838987 AAGGCCCGAACCTAGTCCAA 60.839 55.000 0.00 0.00 39.93 3.53
256 257 1.521141 GAAGGCCCGAACCTAGTCC 59.479 63.158 0.00 0.00 39.93 3.85
259 260 1.823976 GAGGAAGGCCCGAACCTAG 59.176 63.158 0.00 0.00 39.93 3.02
262 263 4.468689 CCGAGGAAGGCCCGAACC 62.469 72.222 0.00 0.00 40.87 3.62
263 264 4.468689 CCCGAGGAAGGCCCGAAC 62.469 72.222 0.00 0.00 40.87 3.95
278 279 1.978712 GAAAAGACTAAGCCGCGCCC 61.979 60.000 0.00 0.00 0.00 6.13
279 280 1.019805 AGAAAAGACTAAGCCGCGCC 61.020 55.000 0.00 0.00 0.00 6.53
280 281 0.370615 GAGAAAAGACTAAGCCGCGC 59.629 55.000 0.00 0.00 0.00 6.86
281 282 1.997669 AGAGAAAAGACTAAGCCGCG 58.002 50.000 0.00 0.00 0.00 6.46
282 283 5.857822 TTTTAGAGAAAAGACTAAGCCGC 57.142 39.130 0.00 0.00 30.89 6.53
321 322 4.220821 TGGAGAAGGACACTGACATAGTTC 59.779 45.833 0.00 0.00 37.60 3.01
425 1130 6.015991 TGTTTTAAGAAAGTACCCCCTCAA 57.984 37.500 0.00 0.00 0.00 3.02
467 1433 9.077885 TCCTCAAGCAGTAATGTAAAAGAAATT 57.922 29.630 0.00 0.00 0.00 1.82
468 1434 8.635765 TCCTCAAGCAGTAATGTAAAAGAAAT 57.364 30.769 0.00 0.00 0.00 2.17
484 1450 6.350445 GCTAAATCCTTTTCAATCCTCAAGCA 60.350 38.462 0.00 0.00 0.00 3.91
514 1483 9.925268 GAAAAATAACTTCAACACTTCGACTTA 57.075 29.630 0.00 0.00 0.00 2.24
531 1500 6.811665 GGGGCTACAAACATCTGAAAAATAAC 59.188 38.462 0.00 0.00 0.00 1.89
575 3030 6.135290 TGCCAAAAGTATAGCAAAGCATAG 57.865 37.500 0.00 0.00 30.97 2.23
757 3257 8.495260 ACTTTGGTGATTTGGGGTTTAAAAATA 58.505 29.630 0.00 0.00 0.00 1.40
937 6736 0.389391 GTCGATTAGCTAGCCTGGCA 59.611 55.000 22.65 6.04 0.00 4.92
1309 10172 3.868757 TCGTAGTTACAGCAGCAGATT 57.131 42.857 0.00 0.00 0.00 2.40
1326 10189 0.242825 CGTACTCCACACACCATCGT 59.757 55.000 0.00 0.00 0.00 3.73
1327 10190 0.524414 TCGTACTCCACACACCATCG 59.476 55.000 0.00 0.00 0.00 3.84
1359 10239 5.393787 CCATCTCAAACTCCACATCATTTGG 60.394 44.000 0.00 0.00 33.72 3.28
1360 10240 5.416639 TCCATCTCAAACTCCACATCATTTG 59.583 40.000 0.00 0.00 34.11 2.32
1361 10241 5.573219 TCCATCTCAAACTCCACATCATTT 58.427 37.500 0.00 0.00 0.00 2.32
1370 10250 4.520492 ACACAAACATCCATCTCAAACTCC 59.480 41.667 0.00 0.00 0.00 3.85
1375 10255 4.619973 GCAAACACAAACATCCATCTCAA 58.380 39.130 0.00 0.00 0.00 3.02
1396 10276 1.235281 GGTTGTCCCAAGAACTCCGC 61.235 60.000 0.00 0.00 0.00 5.54
1410 10290 1.480545 GGAAACCACTGCAAAGGTTGT 59.519 47.619 19.76 11.75 46.92 3.32
1438 10318 8.607459 CAGTGCTGAAAATACAAAGTATAGGAG 58.393 37.037 0.00 0.00 0.00 3.69
1444 10324 4.752604 TCGCAGTGCTGAAAATACAAAGTA 59.247 37.500 14.33 0.00 0.00 2.24
1445 10325 3.563808 TCGCAGTGCTGAAAATACAAAGT 59.436 39.130 14.33 0.00 0.00 2.66
1486 10366 4.894784 ACGTCCATCATGTCTAACAACTT 58.105 39.130 0.00 0.00 0.00 2.66
1536 10416 3.668447 ACACTCAACAGGCAGAACATAG 58.332 45.455 0.00 0.00 0.00 2.23
1548 10428 4.026393 CGACGTATTTGTCAACACTCAACA 60.026 41.667 0.00 0.00 38.84 3.33
1656 10536 7.468631 CGTGGTTTCTTAATATTCAATCTGGGG 60.469 40.741 0.00 0.00 0.00 4.96
1662 10542 9.620660 GTTTGTCGTGGTTTCTTAATATTCAAT 57.379 29.630 0.00 0.00 0.00 2.57
1663 10543 8.842280 AGTTTGTCGTGGTTTCTTAATATTCAA 58.158 29.630 0.00 0.00 0.00 2.69
1664 10544 8.286800 CAGTTTGTCGTGGTTTCTTAATATTCA 58.713 33.333 0.00 0.00 0.00 2.57
1685 10565 7.484140 GTTTTCTGAAACCTTCATCTCAGTTT 58.516 34.615 1.58 0.00 39.36 2.66
1727 10614 3.499338 TGGAGAGTGTCCCGTTAACTAA 58.501 45.455 3.43 0.00 46.31 2.24
1728 10615 3.159213 TGGAGAGTGTCCCGTTAACTA 57.841 47.619 3.43 0.00 46.31 2.24
1736 10623 1.691434 GATCTGGATGGAGAGTGTCCC 59.309 57.143 3.43 0.00 46.31 4.46
1738 10625 2.392662 TGGATCTGGATGGAGAGTGTC 58.607 52.381 0.00 0.00 0.00 3.67
1739 10626 2.503356 GTTGGATCTGGATGGAGAGTGT 59.497 50.000 0.00 0.00 0.00 3.55
1743 10630 3.411454 AGAGTTGGATCTGGATGGAGA 57.589 47.619 0.00 0.00 0.00 3.71
1750 10637 7.353414 TCTGATACTAAAGAGTTGGATCTGG 57.647 40.000 0.00 0.00 37.10 3.86
1756 10643 8.417106 TCAATAGCTCTGATACTAAAGAGTTGG 58.583 37.037 0.00 0.00 41.69 3.77
1773 10660 6.707599 AGTTAGAAACGTTGTCAATAGCTC 57.292 37.500 0.00 0.00 36.23 4.09
1786 10673 9.632969 CCGTTGAATATTATCAAGTTAGAAACG 57.367 33.333 0.00 0.00 39.84 3.60
1808 10708 2.874457 GCATGAGTCAGTTTACCCCGTT 60.874 50.000 0.00 0.00 0.00 4.44
1811 10711 2.789409 AGCATGAGTCAGTTTACCCC 57.211 50.000 0.00 0.00 0.00 4.95
1894 10801 5.163713 CCATCTTCGGTTTCCATTTTCTCTC 60.164 44.000 0.00 0.00 0.00 3.20
1902 10809 5.832539 ATATCTCCATCTTCGGTTTCCAT 57.167 39.130 0.00 0.00 0.00 3.41
1903 10810 5.630415 AATATCTCCATCTTCGGTTTCCA 57.370 39.130 0.00 0.00 0.00 3.53
1904 10811 9.892130 ATATTAATATCTCCATCTTCGGTTTCC 57.108 33.333 1.91 0.00 0.00 3.13
1946 10853 4.461198 ACACGGGAGACAATTCTCTTTTT 58.539 39.130 0.00 0.00 46.80 1.94
1947 10854 4.065789 GACACGGGAGACAATTCTCTTTT 58.934 43.478 0.00 0.00 46.80 2.27
1948 10855 3.325135 AGACACGGGAGACAATTCTCTTT 59.675 43.478 0.00 0.00 46.80 2.52
1949 10856 2.900546 AGACACGGGAGACAATTCTCTT 59.099 45.455 0.00 0.00 46.80 2.85
1950 10857 2.530701 AGACACGGGAGACAATTCTCT 58.469 47.619 0.00 0.00 46.80 3.10
1951 10858 3.735514 GCTAGACACGGGAGACAATTCTC 60.736 52.174 0.00 0.00 46.90 2.87
1952 10859 2.166664 GCTAGACACGGGAGACAATTCT 59.833 50.000 0.00 0.00 33.37 2.40
1953 10860 2.166664 AGCTAGACACGGGAGACAATTC 59.833 50.000 0.00 0.00 0.00 2.17
1954 10861 2.180276 AGCTAGACACGGGAGACAATT 58.820 47.619 0.00 0.00 0.00 2.32
1955 10862 1.853963 AGCTAGACACGGGAGACAAT 58.146 50.000 0.00 0.00 0.00 2.71
1956 10863 1.544691 GAAGCTAGACACGGGAGACAA 59.455 52.381 0.00 0.00 0.00 3.18
1957 10864 1.174783 GAAGCTAGACACGGGAGACA 58.825 55.000 0.00 0.00 0.00 3.41
1958 10865 1.402613 GAGAAGCTAGACACGGGAGAC 59.597 57.143 0.00 0.00 0.00 3.36
1959 10866 1.282447 AGAGAAGCTAGACACGGGAGA 59.718 52.381 0.00 0.00 0.00 3.71
1960 10867 1.757682 AGAGAAGCTAGACACGGGAG 58.242 55.000 0.00 0.00 0.00 4.30
1961 10868 1.819288 CAAGAGAAGCTAGACACGGGA 59.181 52.381 0.00 0.00 0.00 5.14
1962 10869 1.737363 GCAAGAGAAGCTAGACACGGG 60.737 57.143 0.00 0.00 0.00 5.28
1963 10870 1.634702 GCAAGAGAAGCTAGACACGG 58.365 55.000 0.00 0.00 0.00 4.94
1964 10871 1.135660 TCGCAAGAGAAGCTAGACACG 60.136 52.381 0.00 0.00 45.01 4.49
1965 10872 2.638556 TCGCAAGAGAAGCTAGACAC 57.361 50.000 0.00 0.00 45.01 3.67
1982 10896 7.955864 CACATGATCATTATTACTCTTGCATCG 59.044 37.037 5.16 0.00 0.00 3.84
1983 10897 8.996271 TCACATGATCATTATTACTCTTGCATC 58.004 33.333 5.16 0.00 0.00 3.91
1984 10898 8.913487 TCACATGATCATTATTACTCTTGCAT 57.087 30.769 5.16 0.00 0.00 3.96
2011 10925 9.997482 GTAACCAAATATTTACGACAACATGAT 57.003 29.630 0.00 0.00 0.00 2.45
2012 10926 9.221933 AGTAACCAAATATTTACGACAACATGA 57.778 29.630 0.00 0.00 34.05 3.07
2013 10927 9.485591 GAGTAACCAAATATTTACGACAACATG 57.514 33.333 0.00 0.00 34.05 3.21
2016 10930 7.335171 AGGGAGTAACCAAATATTTACGACAAC 59.665 37.037 0.00 0.00 41.20 3.32
2017 10931 7.396418 AGGGAGTAACCAAATATTTACGACAA 58.604 34.615 0.00 0.00 41.20 3.18
2018 10932 6.949715 AGGGAGTAACCAAATATTTACGACA 58.050 36.000 0.00 0.00 41.20 4.35
2020 10934 6.585416 GGAGGGAGTAACCAAATATTTACGA 58.415 40.000 0.00 0.00 41.20 3.43
2021 10935 5.464389 CGGAGGGAGTAACCAAATATTTACG 59.536 44.000 0.00 0.00 41.20 3.18
2024 10938 5.446260 ACGGAGGGAGTAACCAAATATTT 57.554 39.130 0.00 0.00 41.20 1.40
2025 10939 5.045432 TGAACGGAGGGAGTAACCAAATATT 60.045 40.000 0.00 0.00 41.20 1.28
2026 10940 4.472108 TGAACGGAGGGAGTAACCAAATAT 59.528 41.667 0.00 0.00 41.20 1.28
2028 10942 2.640826 TGAACGGAGGGAGTAACCAAAT 59.359 45.455 0.00 0.00 41.20 2.32
2032 10946 3.345508 AAATGAACGGAGGGAGTAACC 57.654 47.619 0.00 0.00 38.08 2.85
2033 10947 4.517832 ACAAAAATGAACGGAGGGAGTAAC 59.482 41.667 0.00 0.00 0.00 2.50
2035 10949 4.360951 ACAAAAATGAACGGAGGGAGTA 57.639 40.909 0.00 0.00 0.00 2.59
2036 10950 3.223674 ACAAAAATGAACGGAGGGAGT 57.776 42.857 0.00 0.00 0.00 3.85
2037 10951 5.001232 TCTTACAAAAATGAACGGAGGGAG 58.999 41.667 0.00 0.00 0.00 4.30
2038 10952 4.758165 GTCTTACAAAAATGAACGGAGGGA 59.242 41.667 0.00 0.00 0.00 4.20
2039 10953 4.517453 TGTCTTACAAAAATGAACGGAGGG 59.483 41.667 0.00 0.00 0.00 4.30
2040 10954 5.682943 TGTCTTACAAAAATGAACGGAGG 57.317 39.130 0.00 0.00 0.00 4.30
2041 10955 8.574196 AAAATGTCTTACAAAAATGAACGGAG 57.426 30.769 0.00 0.00 0.00 4.63
2042 10956 9.672086 CTAAAATGTCTTACAAAAATGAACGGA 57.328 29.630 0.00 0.00 0.00 4.69
2043 10957 9.672086 TCTAAAATGTCTTACAAAAATGAACGG 57.328 29.630 0.00 0.00 0.00 4.44
2073 10987 8.836268 TCGAACTGTTATAGGTGTTGTTTTAT 57.164 30.769 0.00 0.00 0.00 1.40
2074 10988 8.836268 ATCGAACTGTTATAGGTGTTGTTTTA 57.164 30.769 0.00 0.00 0.00 1.52
2075 10989 7.739498 ATCGAACTGTTATAGGTGTTGTTTT 57.261 32.000 0.00 0.00 0.00 2.43
2077 10991 7.442969 TGAAATCGAACTGTTATAGGTGTTGTT 59.557 33.333 0.00 0.00 0.00 2.83
2078 10992 6.932400 TGAAATCGAACTGTTATAGGTGTTGT 59.068 34.615 0.00 0.00 0.00 3.32
2079 10993 7.117812 ACTGAAATCGAACTGTTATAGGTGTTG 59.882 37.037 0.00 0.00 0.00 3.33
2081 10995 6.698380 ACTGAAATCGAACTGTTATAGGTGT 58.302 36.000 0.00 0.00 0.00 4.16
2082 10996 7.117812 ACAACTGAAATCGAACTGTTATAGGTG 59.882 37.037 0.00 0.00 0.00 4.00
2083 10997 7.159372 ACAACTGAAATCGAACTGTTATAGGT 58.841 34.615 0.00 0.00 0.00 3.08
2084 10998 7.545965 AGACAACTGAAATCGAACTGTTATAGG 59.454 37.037 0.00 0.00 0.00 2.57
2085 10999 8.467402 AGACAACTGAAATCGAACTGTTATAG 57.533 34.615 0.00 0.00 0.00 1.31
2086 11000 8.827177 AAGACAACTGAAATCGAACTGTTATA 57.173 30.769 0.00 0.00 0.00 0.98
2087 11001 7.730364 AAGACAACTGAAATCGAACTGTTAT 57.270 32.000 0.00 0.00 0.00 1.89
2088 11002 8.651391 TTAAGACAACTGAAATCGAACTGTTA 57.349 30.769 0.00 0.00 0.00 2.41
2090 11004 7.548196 TTTAAGACAACTGAAATCGAACTGT 57.452 32.000 0.00 0.00 0.00 3.55
2092 11006 8.283291 GTCATTTAAGACAACTGAAATCGAACT 58.717 33.333 0.00 0.00 35.62 3.01
2093 11007 8.283291 AGTCATTTAAGACAACTGAAATCGAAC 58.717 33.333 0.00 0.00 40.98 3.95
2095 11009 7.655732 TGAGTCATTTAAGACAACTGAAATCGA 59.344 33.333 0.00 0.00 40.98 3.59
2097 11011 8.559536 TGTGAGTCATTTAAGACAACTGAAATC 58.440 33.333 0.00 0.00 40.98 2.17
2098 11012 8.450578 TGTGAGTCATTTAAGACAACTGAAAT 57.549 30.769 0.00 0.00 40.98 2.17
2100 11014 7.857734 TTGTGAGTCATTTAAGACAACTGAA 57.142 32.000 0.00 0.00 40.98 3.02
2101 11015 7.857734 TTTGTGAGTCATTTAAGACAACTGA 57.142 32.000 0.00 0.00 40.98 3.41
2102 11016 8.184192 ACTTTTGTGAGTCATTTAAGACAACTG 58.816 33.333 14.32 3.97 40.98 3.16
2103 11017 8.281212 ACTTTTGTGAGTCATTTAAGACAACT 57.719 30.769 14.32 0.00 40.98 3.16
2121 11035 6.481434 ACTACTCCTACTGTTCACTTTTGT 57.519 37.500 0.00 0.00 0.00 2.83
2122 11036 6.202954 CCAACTACTCCTACTGTTCACTTTTG 59.797 42.308 0.00 0.00 0.00 2.44
2123 11037 6.126854 ACCAACTACTCCTACTGTTCACTTTT 60.127 38.462 0.00 0.00 0.00 2.27
2124 11038 5.365895 ACCAACTACTCCTACTGTTCACTTT 59.634 40.000 0.00 0.00 0.00 2.66
2125 11039 4.900054 ACCAACTACTCCTACTGTTCACTT 59.100 41.667 0.00 0.00 0.00 3.16
2126 11040 4.481072 ACCAACTACTCCTACTGTTCACT 58.519 43.478 0.00 0.00 0.00 3.41
2127 11041 4.868314 ACCAACTACTCCTACTGTTCAC 57.132 45.455 0.00 0.00 0.00 3.18
2128 11042 5.638133 AGTACCAACTACTCCTACTGTTCA 58.362 41.667 0.00 0.00 32.84 3.18
2129 11043 6.193514 GAGTACCAACTACTCCTACTGTTC 57.806 45.833 0.00 0.00 44.14 3.18
2139 11053 3.166560 ACGAAGGGAGTACCAACTACT 57.833 47.619 0.00 0.00 43.89 2.57
2140 11054 3.949842 AACGAAGGGAGTACCAACTAC 57.050 47.619 0.00 0.00 43.89 2.73
2141 11055 4.961438 AAAACGAAGGGAGTACCAACTA 57.039 40.909 0.00 0.00 43.89 2.24
2142 11056 3.851458 AAAACGAAGGGAGTACCAACT 57.149 42.857 0.00 0.00 43.89 3.16
2143 11057 6.564709 AATAAAAACGAAGGGAGTACCAAC 57.435 37.500 0.00 0.00 43.89 3.77
2144 11058 7.094677 GCTAAATAAAAACGAAGGGAGTACCAA 60.095 37.037 0.00 0.00 43.89 3.67
2145 11059 6.372381 GCTAAATAAAAACGAAGGGAGTACCA 59.628 38.462 0.00 0.00 43.89 3.25
2146 11060 6.596888 AGCTAAATAAAAACGAAGGGAGTACC 59.403 38.462 0.00 0.00 40.67 3.34
2147 11061 7.463780 CGAGCTAAATAAAAACGAAGGGAGTAC 60.464 40.741 0.00 0.00 0.00 2.73
2148 11062 6.532657 CGAGCTAAATAAAAACGAAGGGAGTA 59.467 38.462 0.00 0.00 0.00 2.59
2149 11063 5.350640 CGAGCTAAATAAAAACGAAGGGAGT 59.649 40.000 0.00 0.00 0.00 3.85
2150 11064 5.726963 GCGAGCTAAATAAAAACGAAGGGAG 60.727 44.000 0.00 0.00 0.00 4.30
2151 11065 4.093850 GCGAGCTAAATAAAAACGAAGGGA 59.906 41.667 0.00 0.00 0.00 4.20
2152 11066 4.142773 TGCGAGCTAAATAAAAACGAAGGG 60.143 41.667 0.00 0.00 0.00 3.95
2153 11067 4.965062 TGCGAGCTAAATAAAAACGAAGG 58.035 39.130 0.00 0.00 0.00 3.46
2154 11068 8.767944 AATATGCGAGCTAAATAAAAACGAAG 57.232 30.769 0.00 0.00 0.00 3.79
2155 11069 9.858247 CTAATATGCGAGCTAAATAAAAACGAA 57.142 29.630 0.00 0.00 0.00 3.85
2156 11070 8.007716 GCTAATATGCGAGCTAAATAAAAACGA 58.992 33.333 0.00 0.00 35.73 3.85
2157 11071 8.135575 GCTAATATGCGAGCTAAATAAAAACG 57.864 34.615 0.00 0.00 35.73 3.60
2169 11083 3.971032 AACCAAAGCTAATATGCGAGC 57.029 42.857 0.00 0.00 39.08 5.03
2170 11084 7.016361 ACTTTAACCAAAGCTAATATGCGAG 57.984 36.000 0.00 0.00 44.27 5.03
2171 11085 6.596106 TGACTTTAACCAAAGCTAATATGCGA 59.404 34.615 0.00 0.00 44.27 5.10
2172 11086 6.781138 TGACTTTAACCAAAGCTAATATGCG 58.219 36.000 0.00 0.00 44.27 4.73
2173 11087 7.220875 GCTTGACTTTAACCAAAGCTAATATGC 59.779 37.037 0.00 0.00 44.27 3.14
2174 11088 8.462016 AGCTTGACTTTAACCAAAGCTAATATG 58.538 33.333 6.43 0.00 44.27 1.78
2175 11089 8.581253 AGCTTGACTTTAACCAAAGCTAATAT 57.419 30.769 6.43 0.00 44.27 1.28
2176 11090 7.996098 AGCTTGACTTTAACCAAAGCTAATA 57.004 32.000 6.43 0.00 44.27 0.98
2177 11091 6.901081 AGCTTGACTTTAACCAAAGCTAAT 57.099 33.333 6.43 0.00 44.27 1.73
2178 11092 6.709018 AAGCTTGACTTTAACCAAAGCTAA 57.291 33.333 8.49 0.00 44.27 3.09
2179 11093 6.709018 AAAGCTTGACTTTAACCAAAGCTA 57.291 33.333 0.00 0.00 46.95 3.32
2180 11094 5.598416 AAAGCTTGACTTTAACCAAAGCT 57.402 34.783 0.00 2.50 46.95 3.74
2184 11098 8.220876 AAGTTTGCAAAGCTTGACTTTAACCAA 61.221 33.333 13.26 0.00 45.94 3.67
2185 11099 6.795901 AAGTTTGCAAAGCTTGACTTTAACCA 60.796 34.615 13.26 0.00 45.94 3.67
2186 11100 5.580691 AAGTTTGCAAAGCTTGACTTTAACC 59.419 36.000 13.26 0.00 45.94 2.85
2187 11101 6.647212 AAGTTTGCAAAGCTTGACTTTAAC 57.353 33.333 13.26 0.00 45.94 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.