Multiple sequence alignment - TraesCS7B01G076800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G076800 chr7B 100.000 2306 0 0 1 2306 86638285 86635980 0.000000e+00 4259
1 TraesCS7B01G076800 chr7B 86.885 1403 87 36 556 1932 86648602 86647271 0.000000e+00 1482
2 TraesCS7B01G076800 chr7B 98.560 486 7 0 1 486 729320882 729321367 0.000000e+00 859
3 TraesCS7B01G076800 chr7D 84.348 1495 125 44 508 1932 124833572 124832117 0.000000e+00 1363
4 TraesCS7B01G076800 chr7D 91.481 810 44 10 508 1306 124644644 124643849 0.000000e+00 1090
5 TraesCS7B01G076800 chr7D 85.832 974 69 33 520 1457 124830968 124830028 0.000000e+00 970
6 TraesCS7B01G076800 chr7D 87.752 743 48 23 508 1242 124604559 124603852 0.000000e+00 828
7 TraesCS7B01G076800 chr7D 87.599 629 59 8 1003 1631 124650654 124650045 0.000000e+00 712
8 TraesCS7B01G076800 chr7D 89.173 508 43 4 1801 2306 124595995 124595498 7.000000e-175 623
9 TraesCS7B01G076800 chr7D 95.205 292 14 0 996 1287 124594703 124594412 1.610000e-126 462
10 TraesCS7B01G076800 chr7D 85.319 361 28 16 614 964 124661815 124661470 1.310000e-92 350
11 TraesCS7B01G076800 chr7D 91.701 241 17 1 1382 1619 124596344 124596104 4.750000e-87 331
12 TraesCS7B01G076800 chr5B 99.177 486 4 0 1 486 378837286 378836801 0.000000e+00 876
13 TraesCS7B01G076800 chr5B 98.560 486 6 1 1 486 595026682 595026198 0.000000e+00 857
14 TraesCS7B01G076800 chr4A 98.765 486 5 1 1 486 427499127 427498643 0.000000e+00 863
15 TraesCS7B01G076800 chr3B 98.560 486 7 0 1 486 756126901 756127386 0.000000e+00 859
16 TraesCS7B01G076800 chr2A 98.563 487 5 1 1 487 25023208 25022724 0.000000e+00 859
17 TraesCS7B01G076800 chr7A 98.364 489 6 2 1 489 180090504 180090018 0.000000e+00 857
18 TraesCS7B01G076800 chr7A 87.326 647 67 11 984 1621 127003641 127003001 0.000000e+00 726
19 TraesCS7B01G076800 chr7A 86.895 641 64 7 1669 2306 127002998 127002375 0.000000e+00 701
20 TraesCS7B01G076800 chr7A 89.697 495 31 9 843 1326 127042148 127041663 4.210000e-172 614
21 TraesCS7B01G076800 chr7A 96.587 293 10 0 995 1287 127001559 127001267 9.580000e-134 486
22 TraesCS7B01G076800 chr7A 89.881 336 24 7 513 844 127039511 127039182 7.620000e-115 424
23 TraesCS7B01G076800 chr7A 86.126 382 36 7 508 885 127004038 127003670 1.660000e-106 396
24 TraesCS7B01G076800 chr7A 81.062 433 41 10 1372 1779 127041649 127041233 8.000000e-80 307
25 TraesCS7B01G076800 chr7A 86.640 247 30 2 1382 1626 127041219 127040974 1.050000e-68 270
26 TraesCS7B01G076800 chr7A 93.069 101 7 0 1226 1326 127038717 127038617 5.130000e-32 148
27 TraesCS7B01G076800 chr2B 98.560 486 6 1 1 486 628456673 628457157 0.000000e+00 857
28 TraesCS7B01G076800 chr5A 98.357 487 8 0 1 487 51483477 51482991 0.000000e+00 856


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G076800 chr7B 86635980 86638285 2305 True 4259.00 4259 100.000000 1 2306 1 chr7B.!!$R1 2305
1 TraesCS7B01G076800 chr7B 86647271 86648602 1331 True 1482.00 1482 86.885000 556 1932 1 chr7B.!!$R2 1376
2 TraesCS7B01G076800 chr7D 124830028 124833572 3544 True 1166.50 1363 85.090000 508 1932 2 chr7D.!!$R6 1424
3 TraesCS7B01G076800 chr7D 124643849 124644644 795 True 1090.00 1090 91.481000 508 1306 1 chr7D.!!$R2 798
4 TraesCS7B01G076800 chr7D 124603852 124604559 707 True 828.00 828 87.752000 508 1242 1 chr7D.!!$R1 734
5 TraesCS7B01G076800 chr7D 124650045 124650654 609 True 712.00 712 87.599000 1003 1631 1 chr7D.!!$R3 628
6 TraesCS7B01G076800 chr7D 124594412 124596344 1932 True 472.00 623 92.026333 996 2306 3 chr7D.!!$R5 1310
7 TraesCS7B01G076800 chr7A 127001267 127004038 2771 True 577.25 726 89.233500 508 2306 4 chr7A.!!$R2 1798
8 TraesCS7B01G076800 chr7A 127038617 127042148 3531 True 352.60 614 88.069800 513 1779 5 chr7A.!!$R3 1266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.035439 CACGCACCAGGGGTATCTTT 60.035 55.0 0.0 0.0 41.32 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 7285 0.029567 CGCCTAGGCTAGAGTTCGTG 59.97 60.0 30.55 7.86 39.32 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.769719 TTCGTGACTTTAATAAAATGTTCGC 57.230 32.000 0.00 0.00 0.00 4.70
28 29 6.010675 TCGTGACTTTAATAAAATGTTCGCG 58.989 36.000 0.00 0.00 0.00 5.87
29 30 6.010675 CGTGACTTTAATAAAATGTTCGCGA 58.989 36.000 3.71 3.71 0.00 5.87
30 31 6.517034 CGTGACTTTAATAAAATGTTCGCGAA 59.483 34.615 19.38 19.38 0.00 4.70
31 32 7.457943 CGTGACTTTAATAAAATGTTCGCGAAC 60.458 37.037 38.12 38.12 41.50 3.95
108 109 9.508642 TTTTTAAAGTCAGGAATTTTTGTGGTT 57.491 25.926 0.00 0.00 30.75 3.67
109 110 8.710835 TTTAAAGTCAGGAATTTTTGTGGTTC 57.289 30.769 0.00 0.00 30.75 3.62
111 112 5.262588 AGTCAGGAATTTTTGTGGTTCAC 57.737 39.130 0.00 0.00 34.56 3.18
112 113 4.041723 GTCAGGAATTTTTGTGGTTCACG 58.958 43.478 0.00 0.00 37.14 4.35
113 114 3.948473 TCAGGAATTTTTGTGGTTCACGA 59.052 39.130 0.00 0.00 37.14 4.35
114 115 4.399618 TCAGGAATTTTTGTGGTTCACGAA 59.600 37.500 0.00 0.00 37.14 3.85
115 116 4.502645 CAGGAATTTTTGTGGTTCACGAAC 59.497 41.667 1.12 1.12 37.46 3.95
116 117 4.158764 AGGAATTTTTGTGGTTCACGAACA 59.841 37.500 11.77 0.00 42.85 3.18
117 118 5.047188 GGAATTTTTGTGGTTCACGAACAT 58.953 37.500 11.77 0.00 42.85 2.71
118 119 5.522097 GGAATTTTTGTGGTTCACGAACATT 59.478 36.000 11.77 10.44 39.41 2.71
119 120 6.036626 GGAATTTTTGTGGTTCACGAACATTT 59.963 34.615 11.77 3.10 37.89 2.32
120 121 6.976636 ATTTTTGTGGTTCACGAACATTTT 57.023 29.167 11.77 0.00 42.85 1.82
121 122 6.787085 TTTTTGTGGTTCACGAACATTTTT 57.213 29.167 11.77 0.00 42.85 1.94
143 144 7.469537 TTTTTCCATACCCACGAACAATATT 57.530 32.000 0.00 0.00 0.00 1.28
144 145 7.469537 TTTTCCATACCCACGAACAATATTT 57.530 32.000 0.00 0.00 0.00 1.40
147 148 5.355630 TCCATACCCACGAACAATATTTGTG 59.644 40.000 0.00 0.77 44.59 3.33
149 150 3.492337 ACCCACGAACAATATTTGTGGT 58.508 40.909 19.89 9.22 46.77 4.16
151 152 4.022676 ACCCACGAACAATATTTGTGGTTC 60.023 41.667 19.89 12.67 46.77 3.62
155 156 4.073169 GAACAATATTTGTGGTTCGCGA 57.927 40.909 3.71 3.71 44.59 5.87
156 157 4.468643 GAACAATATTTGTGGTTCGCGAA 58.531 39.130 19.38 19.38 44.59 4.70
157 158 3.817238 ACAATATTTGTGGTTCGCGAAC 58.183 40.909 37.43 37.43 43.48 3.95
158 159 3.251245 ACAATATTTGTGGTTCGCGAACA 59.749 39.130 42.35 29.37 43.48 3.18
160 161 5.122554 ACAATATTTGTGGTTCGCGAACATA 59.877 36.000 42.35 32.10 43.48 2.29
161 162 6.183360 ACAATATTTGTGGTTCGCGAACATAT 60.183 34.615 42.35 32.64 43.48 1.78
163 164 4.491234 TTTGTGGTTCGCGAACATATTT 57.509 36.364 42.35 0.00 42.85 1.40
165 166 4.073169 TGTGGTTCGCGAACATATTTTC 57.927 40.909 42.35 27.77 42.85 2.29
166 167 3.498777 TGTGGTTCGCGAACATATTTTCA 59.501 39.130 42.35 29.66 42.85 2.69
167 168 4.023963 TGTGGTTCGCGAACATATTTTCAA 60.024 37.500 42.35 21.35 42.85 2.69
168 169 4.912766 GTGGTTCGCGAACATATTTTCAAA 59.087 37.500 42.35 18.04 42.85 2.69
169 170 5.571357 GTGGTTCGCGAACATATTTTCAAAT 59.429 36.000 42.35 0.00 42.85 2.32
170 171 6.088883 GTGGTTCGCGAACATATTTTCAAATT 59.911 34.615 42.35 0.00 42.85 1.82
172 173 7.808381 TGGTTCGCGAACATATTTTCAAATTTA 59.192 29.630 42.35 12.39 42.85 1.40
176 177 9.347934 TCGCGAACATATTTTCAAATTTATTGT 57.652 25.926 6.20 0.00 0.00 2.71
177 178 9.950858 CGCGAACATATTTTCAAATTTATTGTT 57.049 25.926 0.00 0.00 0.00 2.83
211 212 7.800015 TTTTAAAGTCGCGAATATTTTTCCC 57.200 32.000 12.06 0.00 0.00 3.97
212 213 6.497785 TTAAAGTCGCGAATATTTTTCCCA 57.502 33.333 12.06 0.00 0.00 4.37
213 214 5.576447 AAAGTCGCGAATATTTTTCCCAT 57.424 34.783 12.06 0.00 0.00 4.00
215 216 6.877611 AAGTCGCGAATATTTTTCCCATAT 57.122 33.333 12.06 0.00 0.00 1.78
216 217 6.877611 AGTCGCGAATATTTTTCCCATATT 57.122 33.333 12.06 0.00 30.81 1.28
217 218 6.899114 AGTCGCGAATATTTTTCCCATATTC 58.101 36.000 12.06 0.00 39.07 1.75
223 224 7.548673 GAATATTTTTCCCATATTCGCGAAC 57.451 36.000 26.00 0.65 35.11 3.95
225 226 4.974368 TTTTTCCCATATTCGCGAACAT 57.026 36.364 26.00 16.64 0.00 2.71
226 227 4.974368 TTTTCCCATATTCGCGAACATT 57.026 36.364 26.00 11.49 0.00 2.71
227 228 4.974368 TTTCCCATATTCGCGAACATTT 57.026 36.364 26.00 11.08 0.00 2.32
228 229 4.974368 TTCCCATATTCGCGAACATTTT 57.026 36.364 26.00 10.66 0.00 1.82
229 230 4.974368 TCCCATATTCGCGAACATTTTT 57.026 36.364 26.00 9.84 0.00 1.94
262 263 8.447787 AATGAACATTTTTACTATTCACGCAC 57.552 30.769 0.00 0.00 32.42 5.34
263 264 6.375377 TGAACATTTTTACTATTCACGCACC 58.625 36.000 0.00 0.00 0.00 5.01
264 265 5.950758 ACATTTTTACTATTCACGCACCA 57.049 34.783 0.00 0.00 0.00 4.17
265 266 5.938322 ACATTTTTACTATTCACGCACCAG 58.062 37.500 0.00 0.00 0.00 4.00
266 267 5.106317 ACATTTTTACTATTCACGCACCAGG 60.106 40.000 0.00 0.00 0.00 4.45
267 268 2.684001 TTACTATTCACGCACCAGGG 57.316 50.000 0.00 0.00 0.00 4.45
268 269 0.828022 TACTATTCACGCACCAGGGG 59.172 55.000 0.00 0.00 0.00 4.79
270 271 0.828022 CTATTCACGCACCAGGGGTA 59.172 55.000 0.00 0.00 41.32 3.69
271 272 1.416401 CTATTCACGCACCAGGGGTAT 59.584 52.381 0.00 0.00 41.32 2.73
272 273 0.180406 ATTCACGCACCAGGGGTATC 59.820 55.000 0.00 0.00 41.32 2.24
273 274 0.907704 TTCACGCACCAGGGGTATCT 60.908 55.000 0.00 0.00 41.32 1.98
275 276 0.035439 CACGCACCAGGGGTATCTTT 60.035 55.000 0.00 0.00 41.32 2.52
276 277 0.035439 ACGCACCAGGGGTATCTTTG 60.035 55.000 0.00 0.00 41.47 2.77
278 279 1.134098 CGCACCAGGGGTATCTTTGAT 60.134 52.381 0.00 0.00 32.11 2.57
280 281 2.301346 CACCAGGGGTATCTTTGATGC 58.699 52.381 0.00 0.00 32.11 3.91
281 282 1.215423 ACCAGGGGTATCTTTGATGCC 59.785 52.381 6.20 6.20 32.11 4.40
282 283 1.215173 CCAGGGGTATCTTTGATGCCA 59.785 52.381 14.70 0.00 0.00 4.92
283 284 2.358090 CCAGGGGTATCTTTGATGCCAA 60.358 50.000 14.70 0.00 0.00 4.52
298 299 8.680039 TTTGATGCCAAAGATTTTCAGATTTT 57.320 26.923 0.00 0.00 37.36 1.82
334 335 6.576551 TTTTTATTTTTCGCACTGTTCACC 57.423 33.333 0.00 0.00 0.00 4.02
337 338 2.772568 TTTTCGCACTGTTCACCATG 57.227 45.000 0.00 0.00 0.00 3.66
339 340 1.514678 TTCGCACTGTTCACCATGCC 61.515 55.000 0.00 0.00 34.49 4.40
341 342 1.794151 CGCACTGTTCACCATGCCAA 61.794 55.000 0.00 0.00 34.49 4.52
342 343 0.318955 GCACTGTTCACCATGCCAAC 60.319 55.000 0.00 0.00 31.71 3.77
343 344 1.321474 CACTGTTCACCATGCCAACT 58.679 50.000 0.00 0.00 0.00 3.16
344 345 1.001048 CACTGTTCACCATGCCAACTG 60.001 52.381 0.00 0.00 0.00 3.16
345 346 0.599558 CTGTTCACCATGCCAACTGG 59.400 55.000 0.00 0.00 39.80 4.00
357 358 1.767759 CCAACTGGCCATTTAGAGGG 58.232 55.000 5.51 0.00 0.00 4.30
358 359 1.686115 CCAACTGGCCATTTAGAGGGG 60.686 57.143 5.51 0.00 0.00 4.79
360 361 0.552615 ACTGGCCATTTAGAGGGGGT 60.553 55.000 5.51 0.00 0.00 4.95
361 362 0.631212 CTGGCCATTTAGAGGGGGTT 59.369 55.000 5.51 0.00 0.00 4.11
362 363 1.850345 CTGGCCATTTAGAGGGGGTTA 59.150 52.381 5.51 0.00 0.00 2.85
364 365 1.850998 GGCCATTTAGAGGGGGTTAGT 59.149 52.381 0.00 0.00 0.00 2.24
365 366 2.422945 GGCCATTTAGAGGGGGTTAGTG 60.423 54.545 0.00 0.00 0.00 2.74
366 367 2.508300 GCCATTTAGAGGGGGTTAGTGA 59.492 50.000 0.00 0.00 0.00 3.41
367 368 3.433740 GCCATTTAGAGGGGGTTAGTGAG 60.434 52.174 0.00 0.00 0.00 3.51
368 369 4.037927 CCATTTAGAGGGGGTTAGTGAGA 58.962 47.826 0.00 0.00 0.00 3.27
370 371 5.132816 CCATTTAGAGGGGGTTAGTGAGATT 59.867 44.000 0.00 0.00 0.00 2.40
371 372 6.353951 CCATTTAGAGGGGGTTAGTGAGATTT 60.354 42.308 0.00 0.00 0.00 2.17
373 374 4.576330 AGAGGGGGTTAGTGAGATTTTG 57.424 45.455 0.00 0.00 0.00 2.44
374 375 3.267031 AGAGGGGGTTAGTGAGATTTTGG 59.733 47.826 0.00 0.00 0.00 3.28
375 376 3.265489 AGGGGGTTAGTGAGATTTTGGA 58.735 45.455 0.00 0.00 0.00 3.53
376 377 3.010250 AGGGGGTTAGTGAGATTTTGGAC 59.990 47.826 0.00 0.00 0.00 4.02
377 378 3.353557 GGGGTTAGTGAGATTTTGGACC 58.646 50.000 0.00 0.00 0.00 4.46
379 380 4.010349 GGGTTAGTGAGATTTTGGACCTG 58.990 47.826 0.00 0.00 0.00 4.00
382 383 5.501156 GTTAGTGAGATTTTGGACCTGGAT 58.499 41.667 0.00 0.00 0.00 3.41
384 385 3.588842 AGTGAGATTTTGGACCTGGATGA 59.411 43.478 0.00 0.00 0.00 2.92
385 386 3.691609 GTGAGATTTTGGACCTGGATGAC 59.308 47.826 0.00 0.00 0.00 3.06
386 387 3.330405 TGAGATTTTGGACCTGGATGACA 59.670 43.478 0.00 0.00 0.00 3.58
387 388 3.690460 AGATTTTGGACCTGGATGACAC 58.310 45.455 0.00 0.00 0.00 3.67
389 390 2.270352 TTTGGACCTGGATGACACAC 57.730 50.000 0.00 0.00 0.00 3.82
390 391 1.434188 TTGGACCTGGATGACACACT 58.566 50.000 0.00 0.00 0.00 3.55
391 392 1.434188 TGGACCTGGATGACACACTT 58.566 50.000 0.00 0.00 0.00 3.16
392 393 2.615391 TGGACCTGGATGACACACTTA 58.385 47.619 0.00 0.00 0.00 2.24
393 394 2.301870 TGGACCTGGATGACACACTTAC 59.698 50.000 0.00 0.00 0.00 2.34
394 395 2.567615 GGACCTGGATGACACACTTACT 59.432 50.000 0.00 0.00 0.00 2.24
395 396 3.589988 GACCTGGATGACACACTTACTG 58.410 50.000 0.00 0.00 0.00 2.74
397 398 4.157246 ACCTGGATGACACACTTACTGTA 58.843 43.478 0.00 0.00 0.00 2.74
398 399 4.021368 ACCTGGATGACACACTTACTGTAC 60.021 45.833 0.00 0.00 0.00 2.90
400 401 5.279506 CCTGGATGACACACTTACTGTACTT 60.280 44.000 0.00 0.00 0.00 2.24
401 402 5.779922 TGGATGACACACTTACTGTACTTC 58.220 41.667 0.00 0.00 0.00 3.01
402 403 4.857588 GGATGACACACTTACTGTACTTCG 59.142 45.833 0.00 0.00 0.00 3.79
404 405 5.104562 TGACACACTTACTGTACTTCGAG 57.895 43.478 0.00 0.00 0.00 4.04
405 406 4.023450 TGACACACTTACTGTACTTCGAGG 60.023 45.833 0.00 0.00 0.00 4.63
406 407 4.139786 ACACACTTACTGTACTTCGAGGA 58.860 43.478 0.00 0.00 0.00 3.71
408 409 3.505293 ACACTTACTGTACTTCGAGGACC 59.495 47.826 0.00 0.00 0.00 4.46
409 410 3.757493 CACTTACTGTACTTCGAGGACCT 59.243 47.826 0.00 0.00 0.00 3.85
410 411 4.940046 CACTTACTGTACTTCGAGGACCTA 59.060 45.833 0.00 0.00 0.00 3.08
411 412 5.413833 CACTTACTGTACTTCGAGGACCTAA 59.586 44.000 0.00 0.00 0.00 2.69
412 413 6.006449 ACTTACTGTACTTCGAGGACCTAAA 58.994 40.000 0.00 0.00 0.00 1.85
413 414 6.662663 ACTTACTGTACTTCGAGGACCTAAAT 59.337 38.462 0.00 0.00 0.00 1.40
414 415 5.326200 ACTGTACTTCGAGGACCTAAATG 57.674 43.478 0.00 0.00 0.00 2.32
415 416 5.014858 ACTGTACTTCGAGGACCTAAATGA 58.985 41.667 0.00 0.00 0.00 2.57
416 417 5.105837 ACTGTACTTCGAGGACCTAAATGAC 60.106 44.000 0.00 0.00 0.00 3.06
417 418 3.505464 ACTTCGAGGACCTAAATGACG 57.495 47.619 0.00 0.00 0.00 4.35
419 420 3.700038 ACTTCGAGGACCTAAATGACGAT 59.300 43.478 0.00 0.00 0.00 3.73
420 421 4.159879 ACTTCGAGGACCTAAATGACGATT 59.840 41.667 0.00 0.00 0.00 3.34
423 424 5.107133 TCGAGGACCTAAATGACGATTTTC 58.893 41.667 0.00 0.00 33.63 2.29
425 426 5.523916 CGAGGACCTAAATGACGATTTTCAT 59.476 40.000 0.00 0.00 37.87 2.57
426 427 6.700081 CGAGGACCTAAATGACGATTTTCATA 59.300 38.462 0.00 0.00 35.02 2.15
427 428 7.096023 CGAGGACCTAAATGACGATTTTCATAG 60.096 40.741 0.00 0.00 35.02 2.23
428 429 7.565680 AGGACCTAAATGACGATTTTCATAGT 58.434 34.615 0.00 0.00 35.02 2.12
429 430 8.047310 AGGACCTAAATGACGATTTTCATAGTT 58.953 33.333 0.00 0.00 35.02 2.24
430 431 8.336080 GGACCTAAATGACGATTTTCATAGTTC 58.664 37.037 0.00 0.00 35.02 3.01
432 433 7.762615 ACCTAAATGACGATTTTCATAGTTCGA 59.237 33.333 0.00 0.00 35.02 3.71
433 434 8.269424 CCTAAATGACGATTTTCATAGTTCGAG 58.731 37.037 0.00 0.00 35.02 4.04
436 437 5.100259 TGACGATTTTCATAGTTCGAGGAC 58.900 41.667 0.00 0.00 35.64 3.85
437 438 4.430908 ACGATTTTCATAGTTCGAGGACC 58.569 43.478 0.00 0.00 35.64 4.46
438 439 4.159879 ACGATTTTCATAGTTCGAGGACCT 59.840 41.667 0.00 0.00 35.64 3.85
439 440 5.359009 ACGATTTTCATAGTTCGAGGACCTA 59.641 40.000 0.00 0.00 35.64 3.08
440 441 6.040616 ACGATTTTCATAGTTCGAGGACCTAT 59.959 38.462 0.00 0.00 35.64 2.57
442 443 8.244802 CGATTTTCATAGTTCGAGGACCTATAT 58.755 37.037 0.00 0.00 33.59 0.86
443 444 9.360093 GATTTTCATAGTTCGAGGACCTATATG 57.640 37.037 0.00 0.00 0.00 1.78
444 445 8.473358 TTTTCATAGTTCGAGGACCTATATGA 57.527 34.615 0.00 1.78 0.00 2.15
445 446 7.450124 TTCATAGTTCGAGGACCTATATGAC 57.550 40.000 0.00 0.00 30.24 3.06
447 448 6.430308 TCATAGTTCGAGGACCTATATGACAC 59.570 42.308 0.00 0.00 0.00 3.67
448 449 3.890147 AGTTCGAGGACCTATATGACACC 59.110 47.826 0.00 0.00 0.00 4.16
449 450 2.872732 TCGAGGACCTATATGACACCC 58.127 52.381 0.00 0.00 0.00 4.61
450 451 1.893801 CGAGGACCTATATGACACCCC 59.106 57.143 0.00 0.00 0.00 4.95
451 452 2.491086 CGAGGACCTATATGACACCCCT 60.491 54.545 0.00 0.00 0.00 4.79
452 453 2.900546 GAGGACCTATATGACACCCCTG 59.099 54.545 0.00 0.00 0.00 4.45
453 454 2.522705 AGGACCTATATGACACCCCTGA 59.477 50.000 0.00 0.00 0.00 3.86
454 455 3.051341 AGGACCTATATGACACCCCTGAA 60.051 47.826 0.00 0.00 0.00 3.02
455 456 3.714798 GGACCTATATGACACCCCTGAAA 59.285 47.826 0.00 0.00 0.00 2.69
456 457 4.351111 GGACCTATATGACACCCCTGAAAT 59.649 45.833 0.00 0.00 0.00 2.17
459 460 6.151049 ACCTATATGACACCCCTGAAATAGT 58.849 40.000 0.00 0.00 0.00 2.12
460 461 6.619852 ACCTATATGACACCCCTGAAATAGTT 59.380 38.462 0.00 0.00 0.00 2.24
464 465 8.980481 ATATGACACCCCTGAAATAGTTTAAG 57.020 34.615 0.00 0.00 0.00 1.85
465 466 5.566469 TGACACCCCTGAAATAGTTTAAGG 58.434 41.667 0.00 0.00 0.00 2.69
466 467 5.311121 TGACACCCCTGAAATAGTTTAAGGA 59.689 40.000 7.30 0.00 0.00 3.36
467 468 5.567430 ACACCCCTGAAATAGTTTAAGGAC 58.433 41.667 7.30 0.00 0.00 3.85
468 469 4.948004 CACCCCTGAAATAGTTTAAGGACC 59.052 45.833 7.30 0.00 0.00 4.46
469 470 4.856182 ACCCCTGAAATAGTTTAAGGACCT 59.144 41.667 7.30 0.00 0.00 3.85
470 471 6.034003 ACCCCTGAAATAGTTTAAGGACCTA 58.966 40.000 7.30 0.00 0.00 3.08
471 472 6.069789 ACCCCTGAAATAGTTTAAGGACCTAC 60.070 42.308 7.30 0.00 0.00 3.18
472 473 6.069847 CCCCTGAAATAGTTTAAGGACCTACA 60.070 42.308 7.30 0.00 0.00 2.74
473 474 7.048512 CCCTGAAATAGTTTAAGGACCTACAG 58.951 42.308 7.30 0.00 0.00 2.74
474 475 7.311109 CCCTGAAATAGTTTAAGGACCTACAGT 60.311 40.741 7.30 0.00 0.00 3.55
476 477 6.877322 TGAAATAGTTTAAGGACCTACAGTGC 59.123 38.462 0.00 0.00 37.00 4.40
477 478 6.368779 AATAGTTTAAGGACCTACAGTGCA 57.631 37.500 0.00 0.00 39.79 4.57
478 479 4.004196 AGTTTAAGGACCTACAGTGCAC 57.996 45.455 9.40 9.40 39.79 4.57
479 480 3.646637 AGTTTAAGGACCTACAGTGCACT 59.353 43.478 15.25 15.25 39.79 4.40
480 481 4.102681 AGTTTAAGGACCTACAGTGCACTT 59.897 41.667 18.94 11.49 39.79 3.16
481 482 2.841442 AAGGACCTACAGTGCACTTC 57.159 50.000 18.94 11.95 39.79 3.01
496 497 5.665459 GTGCACTTCACTCATCCTATAGTT 58.335 41.667 10.32 0.00 42.38 2.24
497 498 5.751028 GTGCACTTCACTCATCCTATAGTTC 59.249 44.000 10.32 0.00 42.38 3.01
498 499 4.979197 GCACTTCACTCATCCTATAGTTCG 59.021 45.833 0.00 0.00 0.00 3.95
500 501 6.434596 CACTTCACTCATCCTATAGTTCGAG 58.565 44.000 0.00 3.85 0.00 4.04
501 502 5.533154 ACTTCACTCATCCTATAGTTCGAGG 59.467 44.000 11.88 0.37 0.00 4.63
502 503 4.399219 TCACTCATCCTATAGTTCGAGGG 58.601 47.826 11.88 8.98 33.27 4.30
503 504 3.508012 CACTCATCCTATAGTTCGAGGGG 59.492 52.174 11.88 2.27 33.27 4.79
504 505 3.398292 ACTCATCCTATAGTTCGAGGGGA 59.602 47.826 11.88 0.00 33.27 4.81
505 506 4.013728 CTCATCCTATAGTTCGAGGGGAG 58.986 52.174 0.00 0.00 33.27 4.30
506 507 3.398292 TCATCCTATAGTTCGAGGGGAGT 59.602 47.826 0.00 0.00 33.27 3.85
518 519 3.698040 TCGAGGGGAGTAGATGTTTGTAC 59.302 47.826 0.00 0.00 0.00 2.90
530 531 1.002659 TGTTTGTACCCCCATCGACTG 59.997 52.381 0.00 0.00 0.00 3.51
567 571 1.406341 GGCCAACGTCCAAGTATGCTA 60.406 52.381 0.00 0.00 0.00 3.49
586 591 6.773976 TGCTAGCTATATTTTTGGCAAGTT 57.226 33.333 17.23 0.00 0.00 2.66
609 614 8.567948 AGTTTTATGTCGATTCTCAACATTTGT 58.432 29.630 0.00 0.00 35.38 2.83
631 636 4.164843 TGAGATATACAACCCCTTTGCC 57.835 45.455 0.00 0.00 39.01 4.52
643 650 1.102978 CCTTTGCCCCCTACATTTCG 58.897 55.000 0.00 0.00 0.00 3.46
723 730 1.322442 GCTGATTATTCCCCAGCCAC 58.678 55.000 0.00 0.00 45.38 5.01
802 816 2.025418 AACTAACAAGGCGCGTCCG 61.025 57.895 7.31 0.31 40.77 4.79
856 3458 3.954904 AGGCTCCACCGTATATATAGCAG 59.045 47.826 4.30 0.00 46.52 4.24
918 3540 1.592669 ACACTCGCACTCACACAGC 60.593 57.895 0.00 0.00 0.00 4.40
1281 5989 1.599047 CAAGATCACCCAGCTCGGT 59.401 57.895 0.00 0.00 36.18 4.69
1287 5995 0.325296 TCACCCAGCTCGGTTCCTAT 60.325 55.000 0.00 0.00 32.17 2.57
1288 5996 0.179073 CACCCAGCTCGGTTCCTATG 60.179 60.000 0.00 0.00 32.17 2.23
1295 6003 2.771943 AGCTCGGTTCCTATGGATCAAA 59.228 45.455 0.00 0.00 0.00 2.69
1326 6034 3.594134 AGTTGATCTGCTGCTGTAACTC 58.406 45.455 0.00 0.00 0.00 3.01
1327 6035 3.007290 AGTTGATCTGCTGCTGTAACTCA 59.993 43.478 0.00 1.22 0.00 3.41
1330 6038 2.732412 TCTGCTGCTGTAACTCAGAC 57.268 50.000 0.00 0.00 46.27 3.51
1331 6039 1.273606 TCTGCTGCTGTAACTCAGACC 59.726 52.381 0.00 0.00 46.27 3.85
1332 6040 1.001293 CTGCTGCTGTAACTCAGACCA 59.999 52.381 0.00 0.00 46.27 4.02
1333 6041 1.001293 TGCTGCTGTAACTCAGACCAG 59.999 52.381 0.00 0.00 46.27 4.00
1334 6042 2.270911 GCTGCTGTAACTCAGACCAGC 61.271 57.143 3.65 3.65 45.43 4.85
1335 6043 4.559364 GCTGCTGTAACTCAGACCAGCT 62.559 54.545 11.27 0.00 46.65 4.24
1336 6044 2.464157 GCTGTAACTCAGACCAGCTT 57.536 50.000 0.00 0.00 46.27 3.74
1337 6045 2.342179 GCTGTAACTCAGACCAGCTTC 58.658 52.381 0.00 0.00 46.27 3.86
1338 6046 2.028567 GCTGTAACTCAGACCAGCTTCT 60.029 50.000 0.00 0.00 46.27 2.85
1339 6047 3.583806 CTGTAACTCAGACCAGCTTCTG 58.416 50.000 8.85 8.85 46.27 3.02
1341 6049 2.829741 AACTCAGACCAGCTTCTGAC 57.170 50.000 13.08 0.00 45.79 3.51
1342 6050 1.709578 ACTCAGACCAGCTTCTGACA 58.290 50.000 13.08 0.00 45.79 3.58
1343 6051 1.342819 ACTCAGACCAGCTTCTGACAC 59.657 52.381 13.08 0.00 45.79 3.67
1344 6052 0.315251 TCAGACCAGCTTCTGACACG 59.685 55.000 13.08 0.00 45.79 4.49
1345 6053 0.032678 CAGACCAGCTTCTGACACGT 59.967 55.000 9.45 0.00 45.19 4.49
1346 6054 0.032678 AGACCAGCTTCTGACACGTG 59.967 55.000 15.48 15.48 32.44 4.49
1347 6055 0.946221 GACCAGCTTCTGACACGTGG 60.946 60.000 21.57 1.74 32.44 4.94
1361 6069 0.834687 ACGTGGGGTGTGTGGAGTAT 60.835 55.000 0.00 0.00 0.00 2.12
1407 6126 5.467035 AATGGATGTTTGTGTTTTCGGAT 57.533 34.783 0.00 0.00 0.00 4.18
1411 6130 5.068460 TGGATGTTTGTGTTTTCGGATTTCT 59.932 36.000 0.00 0.00 0.00 2.52
1451 6184 2.109480 GGTTTCCCAAGGGTTTCCTACT 59.891 50.000 4.80 0.00 44.07 2.57
1452 6185 3.437491 GGTTTCCCAAGGGTTTCCTACTT 60.437 47.826 4.80 0.00 44.07 2.24
1453 6186 4.220724 GTTTCCCAAGGGTTTCCTACTTT 58.779 43.478 4.80 0.00 44.07 2.66
1454 6187 3.518992 TCCCAAGGGTTTCCTACTTTG 57.481 47.619 4.80 0.00 44.07 2.77
1455 6188 2.787035 TCCCAAGGGTTTCCTACTTTGT 59.213 45.455 4.80 0.00 44.07 2.83
1456 6189 3.982052 TCCCAAGGGTTTCCTACTTTGTA 59.018 43.478 4.80 0.00 44.07 2.41
1457 6190 4.604490 TCCCAAGGGTTTCCTACTTTGTAT 59.396 41.667 4.80 0.00 44.07 2.29
1458 6191 5.075344 TCCCAAGGGTTTCCTACTTTGTATT 59.925 40.000 4.80 0.00 44.07 1.89
1459 6192 5.778241 CCCAAGGGTTTCCTACTTTGTATTT 59.222 40.000 0.00 0.00 44.07 1.40
1460 6193 6.269077 CCCAAGGGTTTCCTACTTTGTATTTT 59.731 38.462 0.00 0.00 44.07 1.82
1461 6194 7.375834 CCAAGGGTTTCCTACTTTGTATTTTC 58.624 38.462 0.00 0.00 44.07 2.29
1470 6203 4.916983 ACTTTGTATTTTCAGCACTGCA 57.083 36.364 3.30 0.00 0.00 4.41
1520 6253 2.932614 GACATGATGGACGTTTCTCCAG 59.067 50.000 0.00 0.00 43.82 3.86
1528 6261 1.544691 GACGTTTCTCCAGGCTCTGTA 59.455 52.381 0.00 0.00 0.00 2.74
1552 6285 6.809869 AGATTATTTTGCTTATGTTCTGCCC 58.190 36.000 0.00 0.00 0.00 5.36
1564 6297 1.444119 TTCTGCCCGTTGAGTGTTGC 61.444 55.000 0.00 0.00 0.00 4.17
1589 6322 1.227999 ACGTCGGTGCATTTCCTGTG 61.228 55.000 0.00 0.00 0.00 3.66
1665 6421 3.559069 ACTTGCATAATGTGATCCCAGG 58.441 45.455 0.00 0.00 0.00 4.45
1667 6423 1.214923 TGCATAATGTGATCCCAGGCA 59.785 47.619 0.00 0.00 0.00 4.75
1688 6446 5.220796 GGCAGAATATTAAGAAACCACGACC 60.221 44.000 0.00 0.00 0.00 4.79
1694 6453 2.413310 AAGAAACCACGACCAACTGT 57.587 45.000 0.00 0.00 0.00 3.55
1707 6466 1.333619 CCAACTGTGGTGAAGGTTTCG 59.666 52.381 0.00 0.00 40.42 3.46
1725 6484 2.294074 TCGGAAAACCACAACTCTTGG 58.706 47.619 0.00 0.00 40.32 3.61
1726 6485 1.336755 CGGAAAACCACAACTCTTGGG 59.663 52.381 0.00 0.00 38.59 4.12
1753 6512 2.623878 TTTCCAGTTAACCGAGCACA 57.376 45.000 0.88 0.00 0.00 4.57
1760 6519 2.038557 AGTTAACCGAGCACACTCCATT 59.961 45.455 0.88 0.00 40.03 3.16
1766 6525 2.625737 CGAGCACACTCCATTCAGATT 58.374 47.619 0.00 0.00 40.03 2.40
1806 7000 9.066892 TCAAAGCTATTGACAATGTTTCTAACT 57.933 29.630 11.05 0.00 0.00 2.24
1834 7028 7.505258 TGAAGGACCATTGATAATATTCGACA 58.495 34.615 0.00 0.00 0.00 4.35
1849 7043 2.589720 TCGACAGGGTAAACTGACTCA 58.410 47.619 0.00 0.00 40.97 3.41
1866 7060 5.861727 TGACTCATGCTAATGCTATGTCAT 58.138 37.500 0.00 0.00 40.48 3.06
1936 7130 6.809630 AGTTTTGCTGGAAGAGAAATACTC 57.190 37.500 0.00 0.00 45.22 2.59
1987 7181 5.659440 GGATTGTCCTAAGGCAAATTCAA 57.341 39.130 0.00 0.00 32.53 2.69
1989 7183 6.643388 GGATTGTCCTAAGGCAAATTCAAAT 58.357 36.000 0.00 0.00 32.53 2.32
1991 7185 6.662865 TTGTCCTAAGGCAAATTCAAATCA 57.337 33.333 0.00 0.00 0.00 2.57
1993 7187 6.690530 TGTCCTAAGGCAAATTCAAATCAAG 58.309 36.000 0.00 0.00 0.00 3.02
1997 7191 5.549742 AAGGCAAATTCAAATCAAGGACA 57.450 34.783 0.00 0.00 0.00 4.02
1998 7192 4.886579 AGGCAAATTCAAATCAAGGACAC 58.113 39.130 0.00 0.00 0.00 3.67
2007 7201 1.444933 ATCAAGGACACCCAACAGGA 58.555 50.000 0.00 0.00 39.89 3.86
2010 7204 0.324943 AAGGACACCCAACAGGATCG 59.675 55.000 0.00 0.00 39.89 3.69
2012 7206 1.003839 GACACCCAACAGGATCGCA 60.004 57.895 0.00 0.00 39.89 5.10
2017 7211 3.120385 CAACAGGATCGCAGCGCA 61.120 61.111 10.87 0.00 0.00 6.09
2018 7212 2.124983 AACAGGATCGCAGCGCAT 60.125 55.556 10.87 4.56 0.00 4.73
2020 7214 3.699484 CAGGATCGCAGCGCATCG 61.699 66.667 10.87 12.96 0.00 3.84
2021 7215 4.957684 AGGATCGCAGCGCATCGG 62.958 66.667 10.87 0.00 0.00 4.18
2046 7240 0.549950 ACAATGGCTGATGGAGGAGG 59.450 55.000 0.00 0.00 0.00 4.30
2054 7248 1.152525 GATGGAGGAGGGTAGGCGA 60.153 63.158 0.00 0.00 0.00 5.54
2056 7250 1.049289 ATGGAGGAGGGTAGGCGAAC 61.049 60.000 0.00 0.00 0.00 3.95
2068 7262 2.740826 GCGAACGGCTTAGCACCA 60.741 61.111 6.53 0.00 39.11 4.17
2073 7267 1.764571 AACGGCTTAGCACCACTCCA 61.765 55.000 6.53 0.00 0.00 3.86
2075 7269 1.741770 GGCTTAGCACCACTCCACG 60.742 63.158 6.53 0.00 0.00 4.94
2077 7271 0.602905 GCTTAGCACCACTCCACGTT 60.603 55.000 0.00 0.00 0.00 3.99
2078 7272 1.148310 CTTAGCACCACTCCACGTTG 58.852 55.000 0.00 0.00 0.00 4.10
2100 7294 1.594293 CACAACGGCCACGAACTCT 60.594 57.895 2.24 0.00 44.60 3.24
2102 7296 0.038526 ACAACGGCCACGAACTCTAG 60.039 55.000 2.24 0.00 44.60 2.43
2107 7301 0.386113 GGCCACGAACTCTAGCCTAG 59.614 60.000 0.00 0.00 40.57 3.02
2125 7319 4.830765 GCGGAGGCACATACGGCA 62.831 66.667 0.00 0.00 39.62 5.69
2146 7340 3.058351 CGTCGAACGCTACAACGG 58.942 61.111 0.00 0.00 33.65 4.44
2155 7349 1.708027 GCTACAACGGCGACATCAC 59.292 57.895 16.62 0.00 0.00 3.06
2159 7353 2.019408 CAACGGCGACATCACGTCA 61.019 57.895 16.62 0.00 45.70 4.35
2160 7354 1.080093 AACGGCGACATCACGTCAT 60.080 52.632 16.62 0.00 45.70 3.06
2162 7356 1.516169 CGGCGACATCACGTCATCA 60.516 57.895 0.00 0.00 45.70 3.07
2172 7366 2.494918 CGTCATCACGTCCTCCCC 59.505 66.667 0.00 0.00 41.42 4.81
2173 7367 2.052690 CGTCATCACGTCCTCCCCT 61.053 63.158 0.00 0.00 41.42 4.79
2174 7368 1.605058 CGTCATCACGTCCTCCCCTT 61.605 60.000 0.00 0.00 41.42 3.95
2175 7369 0.613777 GTCATCACGTCCTCCCCTTT 59.386 55.000 0.00 0.00 0.00 3.11
2177 7371 2.108168 TCATCACGTCCTCCCCTTTAG 58.892 52.381 0.00 0.00 0.00 1.85
2178 7372 0.831307 ATCACGTCCTCCCCTTTAGC 59.169 55.000 0.00 0.00 0.00 3.09
2179 7373 0.543410 TCACGTCCTCCCCTTTAGCA 60.543 55.000 0.00 0.00 0.00 3.49
2188 7382 4.751431 CCTTTAGCAGGGCAGCTT 57.249 55.556 8.98 0.00 43.70 3.74
2189 7383 2.486796 CCTTTAGCAGGGCAGCTTC 58.513 57.895 8.98 0.00 43.70 3.86
2190 7384 0.034670 CCTTTAGCAGGGCAGCTTCT 60.035 55.000 8.98 0.00 43.70 2.85
2191 7385 1.377536 CTTTAGCAGGGCAGCTTCTC 58.622 55.000 8.98 0.00 43.70 2.87
2192 7386 0.035056 TTTAGCAGGGCAGCTTCTCC 60.035 55.000 8.98 0.00 43.70 3.71
2193 7387 2.244117 TTAGCAGGGCAGCTTCTCCG 62.244 60.000 8.98 0.00 43.70 4.63
2194 7388 4.087892 GCAGGGCAGCTTCTCCGA 62.088 66.667 0.00 0.00 0.00 4.55
2195 7389 2.665000 CAGGGCAGCTTCTCCGAA 59.335 61.111 0.00 0.00 0.00 4.30
2196 7390 1.449246 CAGGGCAGCTTCTCCGAAG 60.449 63.158 0.00 0.00 0.00 3.79
2197 7391 1.915769 AGGGCAGCTTCTCCGAAGT 60.916 57.895 5.60 0.00 0.00 3.01
2200 7394 2.394563 GCAGCTTCTCCGAAGTGGC 61.395 63.158 5.60 5.88 37.80 5.01
2202 7396 2.048127 GCTTCTCCGAAGTGGCGT 60.048 61.111 5.60 0.00 37.80 5.68
2204 7398 1.289066 CTTCTCCGAAGTGGCGTGA 59.711 57.895 0.00 0.00 37.80 4.35
2218 7412 3.090598 CGTGATGCAACGCAACAAT 57.909 47.368 8.32 0.00 42.49 2.71
2221 7415 1.980844 GTGATGCAACGCAACAATGAG 59.019 47.619 2.23 0.00 42.49 2.90
2224 7418 0.594540 TGCAACGCAACAATGAGCAC 60.595 50.000 0.00 0.00 34.76 4.40
2242 7436 2.281345 CGCTCTCCATGGGGATGC 60.281 66.667 16.66 18.92 43.91 3.91
2244 7438 1.475169 CGCTCTCCATGGGGATGCTA 61.475 60.000 24.59 2.66 43.91 3.49
2251 7445 1.149174 ATGGGGATGCTACAAGCCG 59.851 57.895 0.00 0.00 41.51 5.52
2271 7465 3.450115 GGTGGAGCTACGGCGAGT 61.450 66.667 16.62 0.00 44.37 4.18
2296 7490 3.758023 CCTGCTTGGTGTTGTCATTATCA 59.242 43.478 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.215568 CGCGAACATTTTATTAAAGTCACGAAT 59.784 33.333 0.00 0.00 0.00 3.34
4 5 6.010675 CGCGAACATTTTATTAAAGTCACGA 58.989 36.000 0.00 0.00 0.00 4.35
5 6 6.010675 TCGCGAACATTTTATTAAAGTCACG 58.989 36.000 6.20 0.00 0.00 4.35
6 7 7.457943 CGTTCGCGAACATTTTATTAAAGTCAC 60.458 37.037 40.99 16.87 44.71 3.67
7 8 6.517034 CGTTCGCGAACATTTTATTAAAGTCA 59.483 34.615 40.99 6.57 44.71 3.41
82 83 9.508642 AACCACAAAAATTCCTGACTTTAAAAA 57.491 25.926 0.00 0.00 0.00 1.94
83 84 9.157104 GAACCACAAAAATTCCTGACTTTAAAA 57.843 29.630 0.00 0.00 0.00 1.52
84 85 8.314751 TGAACCACAAAAATTCCTGACTTTAAA 58.685 29.630 0.00 0.00 0.00 1.52
85 86 7.762159 GTGAACCACAAAAATTCCTGACTTTAA 59.238 33.333 0.00 0.00 34.08 1.52
87 88 6.106003 GTGAACCACAAAAATTCCTGACTTT 58.894 36.000 0.00 0.00 34.08 2.66
88 89 5.660460 GTGAACCACAAAAATTCCTGACTT 58.340 37.500 0.00 0.00 34.08 3.01
89 90 4.202010 CGTGAACCACAAAAATTCCTGACT 60.202 41.667 0.00 0.00 33.40 3.41
90 91 4.041723 CGTGAACCACAAAAATTCCTGAC 58.958 43.478 0.00 0.00 33.40 3.51
91 92 3.948473 TCGTGAACCACAAAAATTCCTGA 59.052 39.130 0.00 0.00 33.40 3.86
93 94 4.158764 TGTTCGTGAACCACAAAAATTCCT 59.841 37.500 10.05 0.00 40.46 3.36
94 95 4.425520 TGTTCGTGAACCACAAAAATTCC 58.574 39.130 10.05 0.00 40.46 3.01
95 96 6.582437 AATGTTCGTGAACCACAAAAATTC 57.418 33.333 10.05 0.00 40.46 2.17
96 97 6.976636 AAATGTTCGTGAACCACAAAAATT 57.023 29.167 10.05 0.00 40.46 1.82
97 98 6.976636 AAAATGTTCGTGAACCACAAAAAT 57.023 29.167 10.05 0.00 40.46 1.82
98 99 6.787085 AAAAATGTTCGTGAACCACAAAAA 57.213 29.167 10.05 0.00 40.46 1.94
119 120 7.469537 AATATTGTTCGTGGGTATGGAAAAA 57.530 32.000 0.00 0.00 0.00 1.94
120 121 7.039644 ACAAATATTGTTCGTGGGTATGGAAAA 60.040 33.333 0.00 0.00 42.22 2.29
121 122 6.434652 ACAAATATTGTTCGTGGGTATGGAAA 59.565 34.615 0.00 0.00 42.22 3.13
123 124 5.355630 CACAAATATTGTTCGTGGGTATGGA 59.644 40.000 0.00 0.00 43.23 3.41
124 125 5.449862 CCACAAATATTGTTCGTGGGTATGG 60.450 44.000 14.45 0.31 43.23 2.74
125 126 5.577835 CCACAAATATTGTTCGTGGGTATG 58.422 41.667 14.45 0.00 43.23 2.39
126 127 5.712917 AACCACAAATATTGTTCGTGGGTAT 59.287 36.000 21.38 10.87 45.72 2.73
127 128 5.071370 AACCACAAATATTGTTCGTGGGTA 58.929 37.500 21.38 0.00 45.72 3.69
134 135 4.073169 TCGCGAACCACAAATATTGTTC 57.927 40.909 6.20 6.40 43.23 3.18
135 136 4.223659 GTTCGCGAACCACAAATATTGTT 58.776 39.130 35.88 0.00 43.23 2.83
136 137 3.251245 TGTTCGCGAACCACAAATATTGT 59.749 39.130 40.08 0.00 40.79 2.71
140 141 5.804692 AATATGTTCGCGAACCACAAATA 57.195 34.783 40.08 30.86 40.46 1.40
141 142 4.695217 AATATGTTCGCGAACCACAAAT 57.305 36.364 40.08 29.95 40.46 2.32
143 144 4.023963 TGAAAATATGTTCGCGAACCACAA 60.024 37.500 40.08 26.61 40.46 3.33
144 145 3.498777 TGAAAATATGTTCGCGAACCACA 59.501 39.130 40.08 28.09 40.46 4.17
147 148 6.626199 AATTTGAAAATATGTTCGCGAACC 57.374 33.333 40.08 26.36 40.46 3.62
151 152 9.950858 AACAATAAATTTGAAAATATGTTCGCG 57.049 25.926 0.00 0.00 0.00 5.87
186 187 7.866393 TGGGAAAAATATTCGCGACTTTAAAAA 59.134 29.630 9.15 0.00 34.55 1.94
187 188 7.368833 TGGGAAAAATATTCGCGACTTTAAAA 58.631 30.769 9.15 0.00 34.55 1.52
188 189 6.910995 TGGGAAAAATATTCGCGACTTTAAA 58.089 32.000 9.15 0.00 34.55 1.52
189 190 6.497785 TGGGAAAAATATTCGCGACTTTAA 57.502 33.333 9.15 0.00 34.55 1.52
190 191 6.687081 ATGGGAAAAATATTCGCGACTTTA 57.313 33.333 9.15 1.03 34.55 1.85
191 192 5.576447 ATGGGAAAAATATTCGCGACTTT 57.424 34.783 9.15 6.48 34.55 2.66
193 194 6.877611 AATATGGGAAAAATATTCGCGACT 57.122 33.333 9.15 6.15 34.55 4.18
199 200 7.136119 TGTTCGCGAATATGGGAAAAATATTC 58.864 34.615 26.23 6.02 41.65 1.75
200 201 7.033530 TGTTCGCGAATATGGGAAAAATATT 57.966 32.000 26.23 0.00 41.65 1.28
201 202 6.627395 TGTTCGCGAATATGGGAAAAATAT 57.373 33.333 26.23 0.00 41.65 1.28
202 203 6.627395 ATGTTCGCGAATATGGGAAAAATA 57.373 33.333 27.24 0.00 41.65 1.40
203 204 4.974368 TGTTCGCGAATATGGGAAAAAT 57.026 36.364 26.23 0.00 41.65 1.82
206 207 4.974368 AAATGTTCGCGAATATGGGAAA 57.026 36.364 28.25 0.00 41.65 3.13
207 208 4.974368 AAAATGTTCGCGAATATGGGAA 57.026 36.364 28.25 8.53 38.32 3.97
237 238 7.540745 GGTGCGTGAATAGTAAAAATGTTCATT 59.459 33.333 0.00 0.00 31.66 2.57
238 239 7.027161 GGTGCGTGAATAGTAAAAATGTTCAT 58.973 34.615 0.00 0.00 31.66 2.57
239 240 6.017026 TGGTGCGTGAATAGTAAAAATGTTCA 60.017 34.615 0.00 0.00 0.00 3.18
240 241 6.375377 TGGTGCGTGAATAGTAAAAATGTTC 58.625 36.000 0.00 0.00 0.00 3.18
241 242 6.320494 TGGTGCGTGAATAGTAAAAATGTT 57.680 33.333 0.00 0.00 0.00 2.71
242 243 5.106317 CCTGGTGCGTGAATAGTAAAAATGT 60.106 40.000 0.00 0.00 0.00 2.71
244 245 4.398044 CCCTGGTGCGTGAATAGTAAAAAT 59.602 41.667 0.00 0.00 0.00 1.82
245 246 3.754323 CCCTGGTGCGTGAATAGTAAAAA 59.246 43.478 0.00 0.00 0.00 1.94
246 247 3.340034 CCCTGGTGCGTGAATAGTAAAA 58.660 45.455 0.00 0.00 0.00 1.52
247 248 2.355310 CCCCTGGTGCGTGAATAGTAAA 60.355 50.000 0.00 0.00 0.00 2.01
249 250 0.828022 CCCCTGGTGCGTGAATAGTA 59.172 55.000 0.00 0.00 0.00 1.82
250 251 1.198759 ACCCCTGGTGCGTGAATAGT 61.199 55.000 0.00 0.00 32.98 2.12
251 252 0.828022 TACCCCTGGTGCGTGAATAG 59.172 55.000 0.00 0.00 36.19 1.73
252 253 1.414919 GATACCCCTGGTGCGTGAATA 59.585 52.381 0.00 0.00 36.19 1.75
254 255 0.907704 AGATACCCCTGGTGCGTGAA 60.908 55.000 0.00 0.00 36.19 3.18
255 256 0.907704 AAGATACCCCTGGTGCGTGA 60.908 55.000 0.00 0.00 36.19 4.35
256 257 0.035439 AAAGATACCCCTGGTGCGTG 60.035 55.000 0.00 0.00 36.19 5.34
257 258 0.035439 CAAAGATACCCCTGGTGCGT 60.035 55.000 0.00 0.00 36.19 5.24
258 259 0.251916 TCAAAGATACCCCTGGTGCG 59.748 55.000 0.00 0.00 36.19 5.34
259 260 2.301346 CATCAAAGATACCCCTGGTGC 58.699 52.381 0.00 0.00 36.19 5.01
260 261 2.301346 GCATCAAAGATACCCCTGGTG 58.699 52.381 0.00 0.00 36.19 4.17
261 262 1.215423 GGCATCAAAGATACCCCTGGT 59.785 52.381 0.00 0.00 40.16 4.00
262 263 1.215173 TGGCATCAAAGATACCCCTGG 59.785 52.381 0.00 0.00 0.00 4.45
263 264 2.734755 TGGCATCAAAGATACCCCTG 57.265 50.000 0.00 0.00 0.00 4.45
264 265 3.756082 TTTGGCATCAAAGATACCCCT 57.244 42.857 0.00 0.00 37.89 4.79
273 274 8.680039 AAAATCTGAAAATCTTTGGCATCAAA 57.320 26.923 0.00 0.00 40.23 2.69
311 312 6.100004 TGGTGAACAGTGCGAAAAATAAAAA 58.900 32.000 0.00 0.00 0.00 1.94
314 315 4.902443 TGGTGAACAGTGCGAAAAATAA 57.098 36.364 0.00 0.00 0.00 1.40
315 316 4.793071 CATGGTGAACAGTGCGAAAAATA 58.207 39.130 0.00 0.00 0.00 1.40
316 317 3.641648 CATGGTGAACAGTGCGAAAAAT 58.358 40.909 0.00 0.00 0.00 1.82
317 318 2.797792 GCATGGTGAACAGTGCGAAAAA 60.798 45.455 0.00 0.00 0.00 1.94
318 319 1.268999 GCATGGTGAACAGTGCGAAAA 60.269 47.619 0.00 0.00 0.00 2.29
319 320 0.310543 GCATGGTGAACAGTGCGAAA 59.689 50.000 0.00 0.00 0.00 3.46
320 321 1.514678 GGCATGGTGAACAGTGCGAA 61.515 55.000 0.00 0.00 35.68 4.70
321 322 1.965930 GGCATGGTGAACAGTGCGA 60.966 57.895 0.00 0.00 35.68 5.10
322 323 1.794151 TTGGCATGGTGAACAGTGCG 61.794 55.000 0.00 0.00 35.68 5.34
323 324 0.318955 GTTGGCATGGTGAACAGTGC 60.319 55.000 0.00 0.00 34.76 4.40
324 325 1.001048 CAGTTGGCATGGTGAACAGTG 60.001 52.381 0.00 0.00 0.00 3.66
325 326 1.321474 CAGTTGGCATGGTGAACAGT 58.679 50.000 0.00 0.00 0.00 3.55
326 327 0.599558 CCAGTTGGCATGGTGAACAG 59.400 55.000 0.00 0.00 32.85 3.16
339 340 1.686115 CCCCCTCTAAATGGCCAGTTG 60.686 57.143 27.93 17.13 0.00 3.16
341 342 0.552615 ACCCCCTCTAAATGGCCAGT 60.553 55.000 13.05 5.37 0.00 4.00
342 343 0.631212 AACCCCCTCTAAATGGCCAG 59.369 55.000 13.05 0.00 0.00 4.85
343 344 1.850345 CTAACCCCCTCTAAATGGCCA 59.150 52.381 8.56 8.56 0.00 5.36
344 345 1.850998 ACTAACCCCCTCTAAATGGCC 59.149 52.381 0.00 0.00 0.00 5.36
345 346 2.508300 TCACTAACCCCCTCTAAATGGC 59.492 50.000 0.00 0.00 0.00 4.40
346 347 4.037927 TCTCACTAACCCCCTCTAAATGG 58.962 47.826 0.00 0.00 0.00 3.16
347 348 5.896073 ATCTCACTAACCCCCTCTAAATG 57.104 43.478 0.00 0.00 0.00 2.32
348 349 6.910259 AAATCTCACTAACCCCCTCTAAAT 57.090 37.500 0.00 0.00 0.00 1.40
350 351 5.045140 CCAAAATCTCACTAACCCCCTCTAA 60.045 44.000 0.00 0.00 0.00 2.10
353 354 3.265995 TCCAAAATCTCACTAACCCCCTC 59.734 47.826 0.00 0.00 0.00 4.30
354 355 3.010250 GTCCAAAATCTCACTAACCCCCT 59.990 47.826 0.00 0.00 0.00 4.79
355 356 3.353557 GTCCAAAATCTCACTAACCCCC 58.646 50.000 0.00 0.00 0.00 5.40
356 357 3.010250 AGGTCCAAAATCTCACTAACCCC 59.990 47.826 0.00 0.00 0.00 4.95
357 358 4.010349 CAGGTCCAAAATCTCACTAACCC 58.990 47.826 0.00 0.00 0.00 4.11
358 359 4.010349 CCAGGTCCAAAATCTCACTAACC 58.990 47.826 0.00 0.00 0.00 2.85
360 361 5.250543 TCATCCAGGTCCAAAATCTCACTAA 59.749 40.000 0.00 0.00 0.00 2.24
361 362 4.782691 TCATCCAGGTCCAAAATCTCACTA 59.217 41.667 0.00 0.00 0.00 2.74
362 363 3.588842 TCATCCAGGTCCAAAATCTCACT 59.411 43.478 0.00 0.00 0.00 3.41
364 365 3.330405 TGTCATCCAGGTCCAAAATCTCA 59.670 43.478 0.00 0.00 0.00 3.27
365 366 3.691609 GTGTCATCCAGGTCCAAAATCTC 59.308 47.826 0.00 0.00 0.00 2.75
366 367 3.074390 TGTGTCATCCAGGTCCAAAATCT 59.926 43.478 0.00 0.00 0.00 2.40
367 368 3.191371 GTGTGTCATCCAGGTCCAAAATC 59.809 47.826 0.00 0.00 0.00 2.17
368 369 3.157087 GTGTGTCATCCAGGTCCAAAAT 58.843 45.455 0.00 0.00 0.00 1.82
370 371 1.774254 AGTGTGTCATCCAGGTCCAAA 59.226 47.619 0.00 0.00 0.00 3.28
371 372 1.434188 AGTGTGTCATCCAGGTCCAA 58.566 50.000 0.00 0.00 0.00 3.53
373 374 2.567615 AGTAAGTGTGTCATCCAGGTCC 59.432 50.000 0.00 0.00 0.00 4.46
374 375 3.006967 ACAGTAAGTGTGTCATCCAGGTC 59.993 47.826 0.00 0.00 38.28 3.85
375 376 2.972713 ACAGTAAGTGTGTCATCCAGGT 59.027 45.455 0.00 0.00 38.28 4.00
376 377 3.685139 ACAGTAAGTGTGTCATCCAGG 57.315 47.619 0.00 0.00 38.28 4.45
377 378 5.392767 AGTACAGTAAGTGTGTCATCCAG 57.607 43.478 0.00 0.00 40.69 3.86
379 380 4.857588 CGAAGTACAGTAAGTGTGTCATCC 59.142 45.833 0.00 0.00 40.69 3.51
382 383 4.023450 CCTCGAAGTACAGTAAGTGTGTCA 60.023 45.833 0.00 0.00 40.69 3.58
384 385 4.023365 GTCCTCGAAGTACAGTAAGTGTGT 60.023 45.833 0.00 0.00 40.69 3.72
385 386 4.474113 GTCCTCGAAGTACAGTAAGTGTG 58.526 47.826 0.00 0.00 40.69 3.82
386 387 3.505293 GGTCCTCGAAGTACAGTAAGTGT 59.495 47.826 0.00 0.00 43.86 3.55
387 388 3.757493 AGGTCCTCGAAGTACAGTAAGTG 59.243 47.826 0.00 0.00 0.00 3.16
389 390 6.506500 TTTAGGTCCTCGAAGTACAGTAAG 57.493 41.667 0.00 0.00 0.00 2.34
390 391 6.660521 TCATTTAGGTCCTCGAAGTACAGTAA 59.339 38.462 0.00 0.00 0.00 2.24
391 392 6.094603 GTCATTTAGGTCCTCGAAGTACAGTA 59.905 42.308 0.00 0.00 0.00 2.74
392 393 5.014858 TCATTTAGGTCCTCGAAGTACAGT 58.985 41.667 0.00 0.00 0.00 3.55
393 394 5.341617 GTCATTTAGGTCCTCGAAGTACAG 58.658 45.833 0.00 0.00 0.00 2.74
394 395 4.142534 CGTCATTTAGGTCCTCGAAGTACA 60.143 45.833 0.00 0.00 0.00 2.90
395 396 4.095483 TCGTCATTTAGGTCCTCGAAGTAC 59.905 45.833 0.00 0.00 0.00 2.73
397 398 3.087031 TCGTCATTTAGGTCCTCGAAGT 58.913 45.455 0.00 0.00 0.00 3.01
398 399 3.777465 TCGTCATTTAGGTCCTCGAAG 57.223 47.619 0.00 0.00 0.00 3.79
400 401 4.730949 AAATCGTCATTTAGGTCCTCGA 57.269 40.909 0.00 0.00 29.81 4.04
401 402 4.868171 TGAAAATCGTCATTTAGGTCCTCG 59.132 41.667 0.00 0.00 31.51 4.63
402 403 6.927294 ATGAAAATCGTCATTTAGGTCCTC 57.073 37.500 0.00 0.00 34.49 3.71
404 405 7.787725 ACTATGAAAATCGTCATTTAGGTCC 57.212 36.000 0.00 0.00 39.07 4.46
405 406 8.056571 CGAACTATGAAAATCGTCATTTAGGTC 58.943 37.037 0.00 0.00 39.07 3.85
406 407 7.762615 TCGAACTATGAAAATCGTCATTTAGGT 59.237 33.333 0.00 0.00 39.07 3.08
408 409 8.269424 CCTCGAACTATGAAAATCGTCATTTAG 58.731 37.037 0.00 0.00 39.07 1.85
409 410 7.977293 TCCTCGAACTATGAAAATCGTCATTTA 59.023 33.333 0.00 0.00 39.07 1.40
410 411 6.816640 TCCTCGAACTATGAAAATCGTCATTT 59.183 34.615 0.00 0.00 39.07 2.32
411 412 6.255887 GTCCTCGAACTATGAAAATCGTCATT 59.744 38.462 0.00 0.00 39.07 2.57
412 413 5.749109 GTCCTCGAACTATGAAAATCGTCAT 59.251 40.000 0.00 0.00 41.21 3.06
413 414 5.100259 GTCCTCGAACTATGAAAATCGTCA 58.900 41.667 0.00 0.00 36.70 4.35
414 415 4.503370 GGTCCTCGAACTATGAAAATCGTC 59.497 45.833 0.00 0.00 36.70 4.20
415 416 4.159879 AGGTCCTCGAACTATGAAAATCGT 59.840 41.667 0.00 0.00 36.70 3.73
416 417 4.683832 AGGTCCTCGAACTATGAAAATCG 58.316 43.478 0.00 0.00 36.67 3.34
417 418 9.360093 CATATAGGTCCTCGAACTATGAAAATC 57.640 37.037 9.07 0.00 41.89 2.17
419 420 8.358148 GTCATATAGGTCCTCGAACTATGAAAA 58.642 37.037 9.07 0.00 41.89 2.29
420 421 7.504574 TGTCATATAGGTCCTCGAACTATGAAA 59.495 37.037 9.07 0.00 41.89 2.69
423 424 6.349445 GGTGTCATATAGGTCCTCGAACTATG 60.349 46.154 9.07 0.00 41.89 2.23
425 426 5.068636 GGTGTCATATAGGTCCTCGAACTA 58.931 45.833 0.00 0.00 36.22 2.24
426 427 3.890147 GGTGTCATATAGGTCCTCGAACT 59.110 47.826 0.00 0.00 32.68 3.01
427 428 3.005578 GGGTGTCATATAGGTCCTCGAAC 59.994 52.174 0.00 0.00 0.00 3.95
428 429 3.228453 GGGTGTCATATAGGTCCTCGAA 58.772 50.000 0.00 0.00 0.00 3.71
429 430 2.490351 GGGGTGTCATATAGGTCCTCGA 60.490 54.545 0.00 0.00 0.00 4.04
430 431 1.893801 GGGGTGTCATATAGGTCCTCG 59.106 57.143 0.00 0.00 0.00 4.63
432 433 2.522705 TCAGGGGTGTCATATAGGTCCT 59.477 50.000 0.00 0.00 0.00 3.85
433 434 2.972348 TCAGGGGTGTCATATAGGTCC 58.028 52.381 0.00 0.00 0.00 4.46
436 437 6.688073 ACTATTTCAGGGGTGTCATATAGG 57.312 41.667 0.00 0.00 0.00 2.57
439 440 7.998964 CCTTAAACTATTTCAGGGGTGTCATAT 59.001 37.037 0.00 0.00 31.76 1.78
440 441 7.183112 TCCTTAAACTATTTCAGGGGTGTCATA 59.817 37.037 2.50 0.00 35.27 2.15
442 443 5.311121 TCCTTAAACTATTTCAGGGGTGTCA 59.689 40.000 2.50 0.00 35.27 3.58
443 444 5.646793 GTCCTTAAACTATTTCAGGGGTGTC 59.353 44.000 2.50 0.00 35.27 3.67
444 445 5.516062 GGTCCTTAAACTATTTCAGGGGTGT 60.516 44.000 2.50 0.00 35.27 4.16
445 446 4.948004 GGTCCTTAAACTATTTCAGGGGTG 59.052 45.833 2.50 0.00 35.27 4.61
447 448 5.452341 AGGTCCTTAAACTATTTCAGGGG 57.548 43.478 2.50 0.00 35.27 4.79
448 449 6.954232 TGTAGGTCCTTAAACTATTTCAGGG 58.046 40.000 0.00 0.00 35.27 4.45
449 450 7.549488 CACTGTAGGTCCTTAAACTATTTCAGG 59.451 40.741 0.00 0.00 35.75 3.86
450 451 7.064728 GCACTGTAGGTCCTTAAACTATTTCAG 59.935 40.741 0.00 0.00 0.00 3.02
451 452 6.877322 GCACTGTAGGTCCTTAAACTATTTCA 59.123 38.462 0.00 0.00 0.00 2.69
452 453 6.877322 TGCACTGTAGGTCCTTAAACTATTTC 59.123 38.462 0.00 0.00 0.00 2.17
453 454 6.653740 GTGCACTGTAGGTCCTTAAACTATTT 59.346 38.462 10.32 0.00 0.00 1.40
454 455 6.013639 AGTGCACTGTAGGTCCTTAAACTATT 60.014 38.462 20.97 0.00 0.00 1.73
455 456 5.484290 AGTGCACTGTAGGTCCTTAAACTAT 59.516 40.000 20.97 0.00 0.00 2.12
456 457 4.836736 AGTGCACTGTAGGTCCTTAAACTA 59.163 41.667 20.97 0.00 0.00 2.24
459 460 4.101898 TGAAGTGCACTGTAGGTCCTTAAA 59.898 41.667 22.49 0.00 0.00 1.52
460 461 3.644265 TGAAGTGCACTGTAGGTCCTTAA 59.356 43.478 22.49 0.00 0.00 1.85
463 464 1.344763 GTGAAGTGCACTGTAGGTCCT 59.655 52.381 22.49 0.61 44.27 3.85
464 465 1.797025 GTGAAGTGCACTGTAGGTCC 58.203 55.000 22.49 4.36 44.27 4.46
474 475 5.450550 CGAACTATAGGATGAGTGAAGTGCA 60.451 44.000 4.43 0.00 0.00 4.57
476 477 6.378710 TCGAACTATAGGATGAGTGAAGTG 57.621 41.667 4.43 0.00 0.00 3.16
477 478 5.533154 CCTCGAACTATAGGATGAGTGAAGT 59.467 44.000 4.43 0.00 34.58 3.01
478 479 5.048364 CCCTCGAACTATAGGATGAGTGAAG 60.048 48.000 4.43 0.00 34.58 3.02
479 480 4.827835 CCCTCGAACTATAGGATGAGTGAA 59.172 45.833 4.43 0.00 34.58 3.18
480 481 4.399219 CCCTCGAACTATAGGATGAGTGA 58.601 47.826 4.43 0.00 34.58 3.41
481 482 3.508012 CCCCTCGAACTATAGGATGAGTG 59.492 52.174 4.43 0.00 34.58 3.51
486 487 4.850963 TCTACTCCCCTCGAACTATAGGAT 59.149 45.833 4.43 0.00 34.58 3.24
487 488 4.237843 TCTACTCCCCTCGAACTATAGGA 58.762 47.826 4.43 0.00 34.58 2.94
488 489 4.637387 TCTACTCCCCTCGAACTATAGG 57.363 50.000 4.43 0.00 0.00 2.57
490 491 5.579753 ACATCTACTCCCCTCGAACTATA 57.420 43.478 0.00 0.00 0.00 1.31
491 492 4.456662 ACATCTACTCCCCTCGAACTAT 57.543 45.455 0.00 0.00 0.00 2.12
492 493 3.947612 ACATCTACTCCCCTCGAACTA 57.052 47.619 0.00 0.00 0.00 2.24
493 494 2.830651 ACATCTACTCCCCTCGAACT 57.169 50.000 0.00 0.00 0.00 3.01
494 495 3.056035 ACAAACATCTACTCCCCTCGAAC 60.056 47.826 0.00 0.00 0.00 3.95
496 497 2.816411 ACAAACATCTACTCCCCTCGA 58.184 47.619 0.00 0.00 0.00 4.04
497 498 3.181478 GGTACAAACATCTACTCCCCTCG 60.181 52.174 0.00 0.00 0.00 4.63
498 499 3.134262 GGGTACAAACATCTACTCCCCTC 59.866 52.174 0.00 0.00 0.00 4.30
500 501 2.172082 GGGGTACAAACATCTACTCCCC 59.828 54.545 0.00 0.00 45.08 4.81
501 502 2.172082 GGGGGTACAAACATCTACTCCC 59.828 54.545 0.00 0.00 44.82 4.30
502 503 2.841881 TGGGGGTACAAACATCTACTCC 59.158 50.000 0.00 0.00 33.21 3.85
503 504 4.704965 GATGGGGGTACAAACATCTACTC 58.295 47.826 12.78 0.00 37.37 2.59
504 505 3.134081 CGATGGGGGTACAAACATCTACT 59.866 47.826 16.00 0.00 38.01 2.57
505 506 3.133362 TCGATGGGGGTACAAACATCTAC 59.867 47.826 16.00 0.00 38.01 2.59
506 507 3.133362 GTCGATGGGGGTACAAACATCTA 59.867 47.826 16.00 7.01 38.01 1.98
530 531 0.608130 GCCACACTTTTGGGATTCCC 59.392 55.000 15.40 15.40 45.71 3.97
533 534 1.416030 GTTGGCCACACTTTTGGGATT 59.584 47.619 3.88 0.00 37.10 3.01
534 535 1.047801 GTTGGCCACACTTTTGGGAT 58.952 50.000 3.88 0.00 37.10 3.85
535 536 1.388065 CGTTGGCCACACTTTTGGGA 61.388 55.000 3.88 0.00 37.10 4.37
536 537 1.067250 CGTTGGCCACACTTTTGGG 59.933 57.895 3.88 0.00 37.10 4.12
547 551 0.676782 AGCATACTTGGACGTTGGCC 60.677 55.000 0.00 0.00 0.00 5.36
567 571 9.586435 GACATAAAACTTGCCAAAAATATAGCT 57.414 29.630 0.00 0.00 0.00 3.32
609 614 4.532834 GGCAAAGGGGTTGTATATCTCAA 58.467 43.478 0.00 0.00 39.63 3.02
611 616 3.487372 GGGCAAAGGGGTTGTATATCTC 58.513 50.000 0.00 0.00 39.63 2.75
612 617 2.177016 GGGGCAAAGGGGTTGTATATCT 59.823 50.000 0.00 0.00 39.63 1.98
613 618 2.594131 GGGGCAAAGGGGTTGTATATC 58.406 52.381 0.00 0.00 39.63 1.63
614 619 1.219469 GGGGGCAAAGGGGTTGTATAT 59.781 52.381 0.00 0.00 39.63 0.86
631 636 6.542370 ACATTGTTAATCTCGAAATGTAGGGG 59.458 38.462 7.43 0.00 39.13 4.79
643 650 3.485877 GCGAGTGGCACATTGTTAATCTC 60.486 47.826 21.41 3.26 44.52 2.75
692 699 4.686554 GGAATAATCAGCGGTGTAGCTTAG 59.313 45.833 15.22 0.00 46.80 2.18
723 730 0.541863 GTGGGTCAGTAGTGGGGATG 59.458 60.000 0.00 0.00 0.00 3.51
780 794 2.175811 GCGCCTTGTTAGTTGCCG 59.824 61.111 0.00 0.00 0.00 5.69
781 795 2.175811 CGCGCCTTGTTAGTTGCC 59.824 61.111 0.00 0.00 0.00 4.52
783 797 1.495951 GGACGCGCCTTGTTAGTTG 59.504 57.895 5.73 0.00 0.00 3.16
784 798 2.025418 CGGACGCGCCTTGTTAGTT 61.025 57.895 5.73 0.00 0.00 2.24
786 800 2.431942 ACGGACGCGCCTTGTTAG 60.432 61.111 5.73 0.00 0.00 2.34
787 801 2.735478 CACGGACGCGCCTTGTTA 60.735 61.111 5.73 0.00 31.52 2.41
802 816 2.182014 GCACGTTTTTCACAACTCCAC 58.818 47.619 0.00 0.00 0.00 4.02
918 3540 2.818714 CCTGGCTGCTGCTTCTCG 60.819 66.667 15.64 0.20 39.59 4.04
1044 5745 4.821589 GCCCAGAACTCCTCCGCG 62.822 72.222 0.00 0.00 0.00 6.46
1139 5847 4.681978 AGGACGCGAACCACAGGC 62.682 66.667 15.93 0.00 0.00 4.85
1281 5989 2.580322 TGCCCAGTTTGATCCATAGGAA 59.420 45.455 0.00 0.00 34.34 3.36
1287 5995 1.355381 ACTCATGCCCAGTTTGATCCA 59.645 47.619 0.00 0.00 0.00 3.41
1288 5996 2.134789 ACTCATGCCCAGTTTGATCC 57.865 50.000 0.00 0.00 0.00 3.36
1295 6003 1.681166 GCAGATCAACTCATGCCCAGT 60.681 52.381 0.00 0.00 32.49 4.00
1326 6034 0.032678 ACGTGTCAGAAGCTGGTCTG 59.967 55.000 8.85 8.85 45.44 3.51
1327 6035 0.032678 CACGTGTCAGAAGCTGGTCT 59.967 55.000 7.58 0.00 31.51 3.85
1330 6038 1.669115 CCCACGTGTCAGAAGCTGG 60.669 63.158 15.65 0.72 31.51 4.85
1331 6039 1.669115 CCCCACGTGTCAGAAGCTG 60.669 63.158 15.65 0.00 0.00 4.24
1332 6040 2.140792 ACCCCACGTGTCAGAAGCT 61.141 57.895 15.65 0.00 0.00 3.74
1333 6041 1.961277 CACCCCACGTGTCAGAAGC 60.961 63.158 15.65 0.00 37.73 3.86
1334 6042 4.361253 CACCCCACGTGTCAGAAG 57.639 61.111 15.65 0.00 37.73 2.85
1342 6050 0.834687 ATACTCCACACACCCCACGT 60.835 55.000 0.00 0.00 0.00 4.49
1343 6051 0.391130 CATACTCCACACACCCCACG 60.391 60.000 0.00 0.00 0.00 4.94
1344 6052 0.981183 TCATACTCCACACACCCCAC 59.019 55.000 0.00 0.00 0.00 4.61
1345 6053 1.203250 TCTCATACTCCACACACCCCA 60.203 52.381 0.00 0.00 0.00 4.96
1346 6054 1.568504 TCTCATACTCCACACACCCC 58.431 55.000 0.00 0.00 0.00 4.95
1347 6055 3.914426 AATCTCATACTCCACACACCC 57.086 47.619 0.00 0.00 0.00 4.61
1377 6085 4.236935 ACACAAACATCCATTTCATTCGC 58.763 39.130 0.00 0.00 0.00 4.70
1385 6104 4.927978 TCCGAAAACACAAACATCCATT 57.072 36.364 0.00 0.00 0.00 3.16
1451 6184 5.659463 AGTTTGCAGTGCTGAAAATACAAA 58.341 33.333 17.60 1.96 40.01 2.83
1452 6185 5.067674 AGAGTTTGCAGTGCTGAAAATACAA 59.932 36.000 17.60 0.00 40.01 2.41
1453 6186 4.580167 AGAGTTTGCAGTGCTGAAAATACA 59.420 37.500 17.60 0.00 40.01 2.29
1454 6187 4.913924 CAGAGTTTGCAGTGCTGAAAATAC 59.086 41.667 17.60 7.07 40.01 1.89
1455 6188 5.112220 CAGAGTTTGCAGTGCTGAAAATA 57.888 39.130 17.60 0.00 40.01 1.40
1456 6189 3.973657 CAGAGTTTGCAGTGCTGAAAAT 58.026 40.909 17.60 8.63 40.01 1.82
1457 6190 3.425577 CAGAGTTTGCAGTGCTGAAAA 57.574 42.857 17.60 5.82 35.83 2.29
1470 6203 1.896220 TGCAAATCTCCGCAGAGTTT 58.104 45.000 0.00 0.00 41.26 2.66
1478 6211 4.092091 GTCTAACAACTCTGCAAATCTCCG 59.908 45.833 0.00 0.00 0.00 4.63
1520 6253 8.159344 ACATAAGCAAAATAATCTACAGAGCC 57.841 34.615 0.00 0.00 0.00 4.70
1528 6261 6.460123 CGGGCAGAACATAAGCAAAATAATCT 60.460 38.462 0.00 0.00 0.00 2.40
1564 6297 2.477189 GGAAATGCACCGACGTATTTGG 60.477 50.000 0.00 0.00 32.27 3.28
1665 6421 5.353123 TGGTCGTGGTTTCTTAATATTCTGC 59.647 40.000 0.00 0.00 0.00 4.26
1667 6423 7.119262 CAGTTGGTCGTGGTTTCTTAATATTCT 59.881 37.037 0.00 0.00 0.00 2.40
1688 6446 1.333619 CCGAAACCTTCACCACAGTTG 59.666 52.381 0.00 0.00 0.00 3.16
1707 6466 2.384828 ACCCAAGAGTTGTGGTTTTCC 58.615 47.619 0.00 0.00 41.14 3.13
1736 6495 1.000506 GAGTGTGCTCGGTTAACTGGA 59.999 52.381 14.44 7.10 31.39 3.86
1737 6496 1.429463 GAGTGTGCTCGGTTAACTGG 58.571 55.000 14.44 6.57 31.39 4.00
1738 6497 1.270094 TGGAGTGTGCTCGGTTAACTG 60.270 52.381 8.22 8.22 42.53 3.16
1753 6512 7.684529 ACTAAAGAGTTGAATCTGAATGGAGT 58.315 34.615 0.00 0.00 28.61 3.85
1760 6519 9.155975 GCTTTGATACTAAAGAGTTGAATCTGA 57.844 33.333 0.00 0.00 39.46 3.27
1796 6990 8.160765 TCAATGGTCCTTCATAAGTTAGAAACA 58.839 33.333 0.00 0.00 0.00 2.83
1808 7002 8.156820 TGTCGAATATTATCAATGGTCCTTCAT 58.843 33.333 0.00 0.00 0.00 2.57
1811 7005 6.936900 CCTGTCGAATATTATCAATGGTCCTT 59.063 38.462 0.00 0.00 0.00 3.36
1831 7025 3.003480 GCATGAGTCAGTTTACCCTGTC 58.997 50.000 0.00 0.00 34.02 3.51
1834 7028 5.431765 CATTAGCATGAGTCAGTTTACCCT 58.568 41.667 0.00 0.00 31.07 4.34
1849 7043 7.355017 CAACGTTTATGACATAGCATTAGCAT 58.645 34.615 0.00 0.00 45.49 3.79
1866 7060 1.141254 TCACCTCCAAGCCAACGTTTA 59.859 47.619 0.00 0.00 0.00 2.01
1967 7161 7.243604 TGATTTGAATTTGCCTTAGGACAAT 57.756 32.000 0.69 0.00 0.00 2.71
1970 7164 6.071391 TCCTTGATTTGAATTTGCCTTAGGAC 60.071 38.462 0.69 0.00 0.00 3.85
1987 7181 1.780309 TCCTGTTGGGTGTCCTTGATT 59.220 47.619 0.00 0.00 36.25 2.57
1989 7183 1.351017 GATCCTGTTGGGTGTCCTTGA 59.649 52.381 0.00 0.00 36.25 3.02
1991 7185 0.324943 CGATCCTGTTGGGTGTCCTT 59.675 55.000 0.00 0.00 36.25 3.36
1993 7187 1.745489 GCGATCCTGTTGGGTGTCC 60.745 63.158 0.00 0.00 36.25 4.02
1997 7191 2.045926 GCTGCGATCCTGTTGGGT 60.046 61.111 0.00 0.00 36.25 4.51
1998 7192 3.197790 CGCTGCGATCCTGTTGGG 61.198 66.667 18.66 0.00 0.00 4.12
2018 7212 1.741401 CAGCCATTGTCGAAGCCGA 60.741 57.895 0.00 0.00 43.35 5.54
2020 7214 0.379669 CATCAGCCATTGTCGAAGCC 59.620 55.000 0.00 0.00 0.00 4.35
2021 7215 0.379669 CCATCAGCCATTGTCGAAGC 59.620 55.000 0.00 0.00 0.00 3.86
2022 7216 1.938577 CTCCATCAGCCATTGTCGAAG 59.061 52.381 0.00 0.00 0.00 3.79
2046 7240 1.881709 GCTAAGCCGTTCGCCTACC 60.882 63.158 0.00 0.00 38.78 3.18
2054 7248 1.003718 GGAGTGGTGCTAAGCCGTT 60.004 57.895 0.00 0.00 0.00 4.44
2056 7250 1.741770 GTGGAGTGGTGCTAAGCCG 60.742 63.158 0.00 0.00 0.00 5.52
2066 7260 2.203139 TGTGCCAACGTGGAGTGG 60.203 61.111 8.04 4.03 40.96 4.00
2068 7262 1.078072 TTGTGTGCCAACGTGGAGT 60.078 52.632 8.04 0.00 40.96 3.85
2088 7282 0.386113 CTAGGCTAGAGTTCGTGGCC 59.614 60.000 16.70 0.00 42.74 5.36
2089 7283 0.386113 CCTAGGCTAGAGTTCGTGGC 59.614 60.000 22.99 0.00 0.00 5.01
2091 7285 0.029567 CGCCTAGGCTAGAGTTCGTG 59.970 60.000 30.55 7.86 39.32 4.35
2093 7287 0.818445 TCCGCCTAGGCTAGAGTTCG 60.818 60.000 30.55 17.57 40.77 3.95
2110 7304 2.890474 CGTGCCGTATGTGCCTCC 60.890 66.667 0.00 0.00 0.00 4.30
2138 7332 0.731514 ACGTGATGTCGCCGTTGTAG 60.732 55.000 0.00 0.00 0.00 2.74
2140 7334 2.019951 GACGTGATGTCGCCGTTGT 61.020 57.895 0.00 0.00 37.96 3.32
2159 7353 0.831307 GCTAAAGGGGAGGACGTGAT 59.169 55.000 0.00 0.00 0.00 3.06
2160 7354 0.543410 TGCTAAAGGGGAGGACGTGA 60.543 55.000 0.00 0.00 0.00 4.35
2162 7356 1.265454 CCTGCTAAAGGGGAGGACGT 61.265 60.000 0.00 0.00 45.88 4.34
2171 7365 0.034670 AGAAGCTGCCCTGCTAAAGG 60.035 55.000 0.00 0.00 46.94 3.11
2172 7366 1.377536 GAGAAGCTGCCCTGCTAAAG 58.622 55.000 0.00 0.00 43.24 1.85
2173 7367 0.035056 GGAGAAGCTGCCCTGCTAAA 60.035 55.000 0.00 0.00 43.24 1.85
2174 7368 1.604378 GGAGAAGCTGCCCTGCTAA 59.396 57.895 0.00 0.00 43.24 3.09
2175 7369 2.725312 CGGAGAAGCTGCCCTGCTA 61.725 63.158 0.00 0.00 43.24 3.49
2177 7371 3.612247 TTCGGAGAAGCTGCCCTGC 62.612 63.158 0.00 0.00 45.90 4.85
2178 7372 1.449246 CTTCGGAGAAGCTGCCCTG 60.449 63.158 0.00 0.00 45.90 4.45
2179 7373 1.915769 ACTTCGGAGAAGCTGCCCT 60.916 57.895 0.00 0.00 45.90 5.19
2182 7376 2.394563 GCCACTTCGGAGAAGCTGC 61.395 63.158 0.00 8.57 45.90 5.25
2183 7377 2.097038 CGCCACTTCGGAGAAGCTG 61.097 63.158 0.00 7.32 45.90 4.24
2184 7378 2.262915 CGCCACTTCGGAGAAGCT 59.737 61.111 0.00 0.00 45.90 3.74
2185 7379 2.048127 ACGCCACTTCGGAGAAGC 60.048 61.111 0.00 0.00 45.90 3.86
2186 7380 0.108615 ATCACGCCACTTCGGAGAAG 60.109 55.000 0.00 8.11 45.90 2.85
2188 7382 1.215382 CATCACGCCACTTCGGAGA 59.785 57.895 0.00 0.00 38.12 3.71
2189 7383 2.456119 GCATCACGCCACTTCGGAG 61.456 63.158 0.00 0.00 41.15 4.63
2190 7384 2.434185 GCATCACGCCACTTCGGA 60.434 61.111 0.00 0.00 36.56 4.55
2191 7385 2.324330 TTGCATCACGCCACTTCGG 61.324 57.895 0.00 0.00 41.33 4.30
2192 7386 1.154413 GTTGCATCACGCCACTTCG 60.154 57.895 0.00 0.00 41.33 3.79
2193 7387 1.154413 CGTTGCATCACGCCACTTC 60.154 57.895 0.00 0.00 41.33 3.01
2194 7388 2.945984 CGTTGCATCACGCCACTT 59.054 55.556 0.00 0.00 41.33 3.16
2200 7394 0.704008 CATTGTTGCGTTGCATCACG 59.296 50.000 6.57 6.57 37.87 4.35
2202 7396 1.666599 GCTCATTGTTGCGTTGCATCA 60.667 47.619 0.00 0.00 38.76 3.07
2204 7398 0.314618 TGCTCATTGTTGCGTTGCAT 59.685 45.000 0.00 0.00 38.76 3.96
2221 7415 4.864334 CCCCATGGAGAGCGGTGC 62.864 72.222 15.22 0.00 0.00 5.01
2224 7418 2.429058 CATCCCCATGGAGAGCGG 59.571 66.667 15.22 5.34 46.08 5.52
2230 7424 3.215328 GGCTTGTAGCATCCCCATGGA 62.215 57.143 15.22 0.00 44.75 3.41
2233 7427 1.149174 CGGCTTGTAGCATCCCCAT 59.851 57.895 0.67 0.00 44.75 4.00
2234 7428 2.589540 CGGCTTGTAGCATCCCCA 59.410 61.111 0.67 0.00 44.75 4.96
2235 7429 2.203209 CCGGCTTGTAGCATCCCC 60.203 66.667 0.00 0.00 44.75 4.81
2242 7436 1.517832 CTCCACCTCCGGCTTGTAG 59.482 63.158 0.00 0.00 0.00 2.74
2244 7438 4.021925 GCTCCACCTCCGGCTTGT 62.022 66.667 0.00 0.00 0.00 3.16
2251 7445 4.208686 CGCCGTAGCTCCACCTCC 62.209 72.222 0.00 0.00 36.60 4.30
2271 7465 0.682532 TGACAACACCAAGCAGGCAA 60.683 50.000 0.00 0.00 43.14 4.52
2280 7474 5.772169 TCCAACAATGATAATGACAACACCA 59.228 36.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.