Multiple sequence alignment - TraesCS7B01G076100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G076100 chr7B 100.000 3166 0 0 1 3166 85844372 85841207 0.000000e+00 5847.0
1 TraesCS7B01G076100 chr7B 77.999 1409 247 45 1428 2809 85781860 85780488 0.000000e+00 826.0
2 TraesCS7B01G076100 chr7B 78.410 1283 211 50 1415 2664 85823067 85824316 0.000000e+00 774.0
3 TraesCS7B01G076100 chr7B 100.000 412 0 0 3451 3862 85840922 85840511 0.000000e+00 761.0
4 TraesCS7B01G076100 chr7B 98.295 352 4 1 1 352 78144524 78144873 1.970000e-172 616.0
5 TraesCS7B01G076100 chr7B 93.266 297 17 3 1 297 565654319 565654026 5.930000e-118 435.0
6 TraesCS7B01G076100 chr7B 75.166 302 59 10 2510 2809 85777463 85777176 1.130000e-25 128.0
7 TraesCS7B01G076100 chr7D 92.187 2099 98 32 976 3018 124167090 124165002 0.000000e+00 2907.0
8 TraesCS7B01G076100 chr7D 78.277 1358 247 37 1428 2764 124029201 124030531 0.000000e+00 830.0
9 TraesCS7B01G076100 chr7D 95.577 407 13 4 526 929 124167499 124167095 0.000000e+00 647.0
10 TraesCS7B01G076100 chr7A 91.499 2141 122 30 932 3018 126794644 126792510 0.000000e+00 2891.0
11 TraesCS7B01G076100 chr7A 78.561 1362 239 41 1428 2764 126775741 126774408 0.000000e+00 848.0
12 TraesCS7B01G076100 chr7A 94.840 407 14 1 3456 3862 511454274 511453875 2.530000e-176 628.0
13 TraesCS7B01G076100 chr7A 89.218 371 20 9 1 352 724901387 724901756 2.740000e-121 446.0
14 TraesCS7B01G076100 chr7A 93.162 117 8 0 788 904 126794754 126794638 5.130000e-39 172.0
15 TraesCS7B01G076100 chr6A 78.030 1411 249 43 1423 2804 555359613 555360991 0.000000e+00 832.0
16 TraesCS7B01G076100 chr6A 95.455 66 3 0 291 356 133413281 133413346 5.280000e-19 106.0
17 TraesCS7B01G076100 chr6A 81.731 104 19 0 2125 2228 555415420 555415317 1.910000e-13 87.9
18 TraesCS7B01G076100 chr6D 77.133 1430 278 37 1438 2847 410041068 410039668 0.000000e+00 784.0
19 TraesCS7B01G076100 chr6D 74.348 230 51 6 2003 2228 410116827 410116602 1.480000e-14 91.6
20 TraesCS7B01G076100 chr6B 76.971 1433 275 39 1438 2847 616427949 616426549 0.000000e+00 767.0
21 TraesCS7B01G076100 chr6B 95.874 412 10 2 3451 3862 706087779 706087375 0.000000e+00 660.0
22 TraesCS7B01G076100 chr6B 97.443 352 6 2 1 352 503878771 503878423 7.140000e-167 597.0
23 TraesCS7B01G076100 chr6B 97.297 148 3 1 3020 3166 706088075 706087928 2.300000e-62 250.0
24 TraesCS7B01G076100 chr3B 95.874 412 10 1 3451 3862 772715658 772716062 0.000000e+00 660.0
25 TraesCS7B01G076100 chr3B 95.395 152 6 1 3016 3166 772715355 772715506 1.390000e-59 241.0
26 TraesCS7B01G076100 chr5B 95.844 409 10 1 3454 3862 474475016 474474615 0.000000e+00 654.0
27 TraesCS7B01G076100 chr5B 95.631 412 11 1 3451 3862 645094721 645094317 0.000000e+00 654.0
28 TraesCS7B01G076100 chr5B 95.946 148 5 1 3020 3166 455266675 455266528 4.990000e-59 239.0
29 TraesCS7B01G076100 chr5B 95.946 148 5 1 3020 3166 455268640 455268493 4.990000e-59 239.0
30 TraesCS7B01G076100 chr5B 95.946 148 5 1 3020 3166 455270060 455269913 4.990000e-59 239.0
31 TraesCS7B01G076100 chr5B 92.683 164 10 2 3004 3166 474475611 474475449 6.450000e-58 235.0
32 TraesCS7B01G076100 chr5B 84.043 94 11 3 2699 2790 418012573 418012482 1.910000e-13 87.9
33 TraesCS7B01G076100 chr5A 96.278 403 8 1 3460 3862 382769900 382770295 0.000000e+00 654.0
34 TraesCS7B01G076100 chr1A 95.802 405 9 2 3459 3862 499968028 499967631 0.000000e+00 647.0
35 TraesCS7B01G076100 chr1A 95.395 152 6 1 3016 3166 499968827 499968676 1.390000e-59 241.0
36 TraesCS7B01G076100 chr2A 94.903 412 14 1 3451 3862 444645538 444645942 4.210000e-179 638.0
37 TraesCS7B01G076100 chr2A 91.946 298 22 2 1 297 760333927 760333631 2.150000e-112 416.0
38 TraesCS7B01G076100 chr2A 97.351 151 3 1 3017 3166 444645238 444645388 4.950000e-64 255.0
39 TraesCS7B01G076100 chr3D 95.443 395 11 1 3468 3862 141463510 141463123 1.180000e-174 623.0
40 TraesCS7B01G076100 chr3A 93.289 298 19 1 1 298 501726647 501726351 4.580000e-119 438.0
41 TraesCS7B01G076100 chr4B 93.266 297 14 3 1 297 467985444 467985734 2.130000e-117 433.0
42 TraesCS7B01G076100 chr1B 92.256 297 20 3 1 297 100153870 100153577 5.970000e-113 418.0
43 TraesCS7B01G076100 chr1B 90.572 297 20 6 1 297 100154634 100154346 1.680000e-103 387.0
44 TraesCS7B01G076100 chr4A 97.241 145 3 1 3017 3160 650390541 650390397 1.070000e-60 244.0
45 TraesCS7B01G076100 chr4A 91.304 69 5 1 297 365 648771333 648771266 4.110000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G076100 chr7B 85840511 85844372 3861 True 3304.0 5847 100.0000 1 3862 2 chr7B.!!$R3 3861
1 TraesCS7B01G076100 chr7B 85823067 85824316 1249 False 774.0 774 78.4100 1415 2664 1 chr7B.!!$F2 1249
2 TraesCS7B01G076100 chr7B 85777176 85781860 4684 True 477.0 826 76.5825 1428 2809 2 chr7B.!!$R2 1381
3 TraesCS7B01G076100 chr7D 124165002 124167499 2497 True 1777.0 2907 93.8820 526 3018 2 chr7D.!!$R1 2492
4 TraesCS7B01G076100 chr7D 124029201 124030531 1330 False 830.0 830 78.2770 1428 2764 1 chr7D.!!$F1 1336
5 TraesCS7B01G076100 chr7A 126792510 126794754 2244 True 1531.5 2891 92.3305 788 3018 2 chr7A.!!$R3 2230
6 TraesCS7B01G076100 chr7A 126774408 126775741 1333 True 848.0 848 78.5610 1428 2764 1 chr7A.!!$R1 1336
7 TraesCS7B01G076100 chr6A 555359613 555360991 1378 False 832.0 832 78.0300 1423 2804 1 chr6A.!!$F2 1381
8 TraesCS7B01G076100 chr6D 410039668 410041068 1400 True 784.0 784 77.1330 1438 2847 1 chr6D.!!$R1 1409
9 TraesCS7B01G076100 chr6B 616426549 616427949 1400 True 767.0 767 76.9710 1438 2847 1 chr6B.!!$R2 1409
10 TraesCS7B01G076100 chr6B 706087375 706088075 700 True 455.0 660 96.5855 3020 3862 2 chr6B.!!$R3 842
11 TraesCS7B01G076100 chr3B 772715355 772716062 707 False 450.5 660 95.6345 3016 3862 2 chr3B.!!$F1 846
12 TraesCS7B01G076100 chr5B 474474615 474475611 996 True 444.5 654 94.2635 3004 3862 2 chr5B.!!$R4 858
13 TraesCS7B01G076100 chr5B 455266528 455270060 3532 True 239.0 239 95.9460 3020 3166 3 chr5B.!!$R3 146
14 TraesCS7B01G076100 chr1A 499967631 499968827 1196 True 444.0 647 95.5985 3016 3862 2 chr1A.!!$R1 846
15 TraesCS7B01G076100 chr2A 444645238 444645942 704 False 446.5 638 96.1270 3017 3862 2 chr2A.!!$F1 845
16 TraesCS7B01G076100 chr1B 100153577 100154634 1057 True 402.5 418 91.4140 1 297 2 chr1B.!!$R1 296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.026674 CACACGCGCTCATATGGTTG 59.973 55.0 5.73 0.0 0.00 3.77 F
130 131 0.026674 CACGCGCTCATATGGTTGTG 59.973 55.0 5.73 0.0 0.00 3.33 F
1338 1344 0.107800 CTGTCCTGTGAGAGGCCATG 60.108 60.0 5.01 0.0 42.47 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1440 0.395311 CTGGTGCTGATCCTGCCATT 60.395 55.0 5.52 0.0 0.0 3.16 R
2000 2060 0.739561 GGTCCTCGTCGCAGTAGAAT 59.260 55.0 0.00 0.0 0.0 2.40 R
2900 2996 1.361668 CCACCAGGTTTCGCTCGATG 61.362 60.0 0.00 0.0 0.0 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.453155 AAGACATGCTTAGTTGCGGG 58.547 50.000 0.00 0.00 34.31 6.13
84 85 8.684386 TTATGTGATATTGAATTTTAGGCGGA 57.316 30.769 0.00 0.00 0.00 5.54
85 86 6.618287 TGTGATATTGAATTTTAGGCGGAG 57.382 37.500 0.00 0.00 0.00 4.63
86 87 6.353323 TGTGATATTGAATTTTAGGCGGAGA 58.647 36.000 0.00 0.00 0.00 3.71
87 88 6.260050 TGTGATATTGAATTTTAGGCGGAGAC 59.740 38.462 0.00 0.00 0.00 3.36
88 89 6.260050 GTGATATTGAATTTTAGGCGGAGACA 59.740 38.462 0.00 0.00 39.87 3.41
89 90 6.998074 TGATATTGAATTTTAGGCGGAGACAT 59.002 34.615 0.00 0.00 39.87 3.06
90 91 4.963276 TTGAATTTTAGGCGGAGACATG 57.037 40.909 0.00 0.00 39.87 3.21
91 92 3.950397 TGAATTTTAGGCGGAGACATGT 58.050 40.909 0.00 0.00 39.87 3.21
92 93 4.331968 TGAATTTTAGGCGGAGACATGTT 58.668 39.130 0.00 0.00 39.87 2.71
93 94 4.764823 TGAATTTTAGGCGGAGACATGTTT 59.235 37.500 0.00 0.00 39.87 2.83
94 95 4.965119 ATTTTAGGCGGAGACATGTTTC 57.035 40.909 7.85 7.85 39.87 2.78
95 96 2.396590 TTAGGCGGAGACATGTTTCC 57.603 50.000 22.60 22.60 39.87 3.13
101 102 2.691409 GGAGACATGTTTCCGGATCA 57.309 50.000 18.80 8.80 0.00 2.92
102 103 3.199880 GGAGACATGTTTCCGGATCAT 57.800 47.619 18.80 10.95 0.00 2.45
103 104 2.874701 GGAGACATGTTTCCGGATCATG 59.125 50.000 31.04 31.04 42.86 3.07
106 107 3.071874 ACATGTTTCCGGATCATGTGT 57.928 42.857 34.39 22.76 46.49 3.72
107 108 3.420893 ACATGTTTCCGGATCATGTGTT 58.579 40.909 34.39 21.11 46.49 3.32
108 109 4.584874 ACATGTTTCCGGATCATGTGTTA 58.415 39.130 34.39 8.47 46.49 2.41
109 110 4.394920 ACATGTTTCCGGATCATGTGTTAC 59.605 41.667 34.39 14.15 46.49 2.50
110 111 4.009370 TGTTTCCGGATCATGTGTTACA 57.991 40.909 4.15 0.00 0.00 2.41
111 112 3.749088 TGTTTCCGGATCATGTGTTACAC 59.251 43.478 4.15 8.76 34.56 2.90
120 121 3.620286 GTGTTACACACGCGCTCA 58.380 55.556 10.96 0.00 39.53 4.26
121 122 2.150424 GTGTTACACACGCGCTCAT 58.850 52.632 10.96 0.00 39.53 2.90
122 123 1.342555 GTGTTACACACGCGCTCATA 58.657 50.000 10.96 0.00 39.53 2.15
123 124 1.924524 GTGTTACACACGCGCTCATAT 59.075 47.619 10.96 0.00 39.53 1.78
124 125 1.923864 TGTTACACACGCGCTCATATG 59.076 47.619 5.73 0.00 0.00 1.78
125 126 1.257936 GTTACACACGCGCTCATATGG 59.742 52.381 5.73 0.00 0.00 2.74
126 127 0.458260 TACACACGCGCTCATATGGT 59.542 50.000 5.73 0.00 0.00 3.55
127 128 0.391130 ACACACGCGCTCATATGGTT 60.391 50.000 5.73 0.00 0.00 3.67
128 129 0.026674 CACACGCGCTCATATGGTTG 59.973 55.000 5.73 0.00 0.00 3.77
129 130 0.391130 ACACGCGCTCATATGGTTGT 60.391 50.000 5.73 0.00 0.00 3.32
130 131 0.026674 CACGCGCTCATATGGTTGTG 59.973 55.000 5.73 0.00 0.00 3.33
131 132 1.010797 CGCGCTCATATGGTTGTGC 60.011 57.895 5.56 10.53 33.81 4.57
132 133 1.704387 CGCGCTCATATGGTTGTGCA 61.704 55.000 20.68 0.00 36.22 4.57
133 134 0.664761 GCGCTCATATGGTTGTGCAT 59.335 50.000 18.02 0.00 36.22 3.96
134 135 1.872952 GCGCTCATATGGTTGTGCATA 59.127 47.619 18.02 0.00 36.22 3.14
135 136 2.290367 GCGCTCATATGGTTGTGCATAA 59.710 45.455 18.02 0.00 36.22 1.90
136 137 3.607775 GCGCTCATATGGTTGTGCATAAG 60.608 47.826 18.02 2.06 36.22 1.73
137 138 3.809279 CGCTCATATGGTTGTGCATAAGA 59.191 43.478 2.13 0.00 36.22 2.10
138 139 4.273235 CGCTCATATGGTTGTGCATAAGAA 59.727 41.667 2.13 0.00 36.22 2.52
139 140 5.220835 CGCTCATATGGTTGTGCATAAGAAA 60.221 40.000 2.13 0.00 36.22 2.52
140 141 5.973565 GCTCATATGGTTGTGCATAAGAAAC 59.026 40.000 2.13 0.00 36.41 2.78
141 142 6.404623 GCTCATATGGTTGTGCATAAGAAACA 60.405 38.462 2.13 0.00 36.41 2.83
142 143 6.851609 TCATATGGTTGTGCATAAGAAACAC 58.148 36.000 2.13 0.00 30.33 3.32
143 144 6.658816 TCATATGGTTGTGCATAAGAAACACT 59.341 34.615 2.13 0.00 30.33 3.55
144 145 5.789643 ATGGTTGTGCATAAGAAACACTT 57.210 34.783 0.00 0.00 42.04 3.16
145 146 6.892658 ATGGTTGTGCATAAGAAACACTTA 57.107 33.333 0.00 0.00 43.89 2.24
146 147 6.701145 TGGTTGTGCATAAGAAACACTTAA 57.299 33.333 0.00 0.00 43.15 1.85
147 148 7.101652 TGGTTGTGCATAAGAAACACTTAAA 57.898 32.000 0.00 0.00 43.15 1.52
148 149 7.721402 TGGTTGTGCATAAGAAACACTTAAAT 58.279 30.769 0.00 0.00 43.15 1.40
149 150 7.651304 TGGTTGTGCATAAGAAACACTTAAATG 59.349 33.333 0.00 0.00 43.15 2.32
150 151 7.116233 GGTTGTGCATAAGAAACACTTAAATGG 59.884 37.037 0.00 0.00 43.15 3.16
151 152 6.155827 TGTGCATAAGAAACACTTAAATGGC 58.844 36.000 0.00 0.00 43.15 4.40
152 153 6.015519 TGTGCATAAGAAACACTTAAATGGCT 60.016 34.615 0.00 0.00 43.15 4.75
153 154 6.528072 GTGCATAAGAAACACTTAAATGGCTC 59.472 38.462 0.00 0.00 43.15 4.70
154 155 5.739161 GCATAAGAAACACTTAAATGGCTCG 59.261 40.000 0.00 0.00 43.15 5.03
155 156 4.766404 AAGAAACACTTAAATGGCTCGG 57.234 40.909 0.00 0.00 37.03 4.63
156 157 3.751518 AGAAACACTTAAATGGCTCGGT 58.248 40.909 0.00 0.00 0.00 4.69
157 158 4.901868 AGAAACACTTAAATGGCTCGGTA 58.098 39.130 0.00 0.00 0.00 4.02
158 159 5.310451 AGAAACACTTAAATGGCTCGGTAA 58.690 37.500 0.00 0.00 0.00 2.85
159 160 5.766174 AGAAACACTTAAATGGCTCGGTAAA 59.234 36.000 0.00 0.00 0.00 2.01
160 161 6.263617 AGAAACACTTAAATGGCTCGGTAAAA 59.736 34.615 0.00 0.00 0.00 1.52
161 162 5.622770 ACACTTAAATGGCTCGGTAAAAG 57.377 39.130 0.00 0.00 0.00 2.27
162 163 5.310451 ACACTTAAATGGCTCGGTAAAAGA 58.690 37.500 0.00 0.00 0.00 2.52
163 164 5.766174 ACACTTAAATGGCTCGGTAAAAGAA 59.234 36.000 0.00 0.00 0.00 2.52
164 165 6.084277 CACTTAAATGGCTCGGTAAAAGAAC 58.916 40.000 0.00 0.00 0.00 3.01
165 166 6.002082 ACTTAAATGGCTCGGTAAAAGAACT 58.998 36.000 0.00 0.00 0.00 3.01
166 167 6.148976 ACTTAAATGGCTCGGTAAAAGAACTC 59.851 38.462 0.00 0.00 0.00 3.01
167 168 3.695830 ATGGCTCGGTAAAAGAACTCA 57.304 42.857 0.00 0.00 0.00 3.41
168 169 2.762745 TGGCTCGGTAAAAGAACTCAC 58.237 47.619 0.00 0.00 0.00 3.51
169 170 2.367567 TGGCTCGGTAAAAGAACTCACT 59.632 45.455 0.00 0.00 0.00 3.41
170 171 3.575256 TGGCTCGGTAAAAGAACTCACTA 59.425 43.478 0.00 0.00 0.00 2.74
171 172 4.039488 TGGCTCGGTAAAAGAACTCACTAA 59.961 41.667 0.00 0.00 0.00 2.24
172 173 4.992951 GGCTCGGTAAAAGAACTCACTAAA 59.007 41.667 0.00 0.00 0.00 1.85
173 174 5.642491 GGCTCGGTAAAAGAACTCACTAAAT 59.358 40.000 0.00 0.00 0.00 1.40
174 175 6.815142 GGCTCGGTAAAAGAACTCACTAAATA 59.185 38.462 0.00 0.00 0.00 1.40
175 176 7.332678 GGCTCGGTAAAAGAACTCACTAAATAA 59.667 37.037 0.00 0.00 0.00 1.40
176 177 8.715088 GCTCGGTAAAAGAACTCACTAAATAAA 58.285 33.333 0.00 0.00 0.00 1.40
229 230 9.588096 ACTATAGACTATGATACATGTGTTGGA 57.412 33.333 9.11 0.00 0.00 3.53
241 242 8.985315 ATACATGTGTTGGATCAGAAATATGT 57.015 30.769 9.11 0.66 0.00 2.29
242 243 7.325660 ACATGTGTTGGATCAGAAATATGTC 57.674 36.000 0.00 0.00 0.00 3.06
243 244 6.885918 ACATGTGTTGGATCAGAAATATGTCA 59.114 34.615 0.00 0.00 0.00 3.58
244 245 6.741992 TGTGTTGGATCAGAAATATGTCAC 57.258 37.500 0.00 0.00 0.00 3.67
245 246 6.237154 TGTGTTGGATCAGAAATATGTCACA 58.763 36.000 0.00 0.00 0.00 3.58
246 247 6.149308 TGTGTTGGATCAGAAATATGTCACAC 59.851 38.462 0.00 0.17 0.00 3.82
247 248 6.372659 GTGTTGGATCAGAAATATGTCACACT 59.627 38.462 0.00 0.00 0.00 3.55
248 249 6.942005 TGTTGGATCAGAAATATGTCACACTT 59.058 34.615 0.00 0.00 0.00 3.16
249 250 7.448161 TGTTGGATCAGAAATATGTCACACTTT 59.552 33.333 0.00 0.00 0.00 2.66
250 251 8.299570 GTTGGATCAGAAATATGTCACACTTTT 58.700 33.333 0.00 0.00 0.00 2.27
251 252 8.408043 TGGATCAGAAATATGTCACACTTTTT 57.592 30.769 0.00 0.00 0.00 1.94
252 253 8.298854 TGGATCAGAAATATGTCACACTTTTTG 58.701 33.333 0.00 0.00 0.00 2.44
253 254 8.514594 GGATCAGAAATATGTCACACTTTTTGA 58.485 33.333 9.20 9.20 0.00 2.69
254 255 9.897744 GATCAGAAATATGTCACACTTTTTGAA 57.102 29.630 10.30 0.00 29.22 2.69
284 285 9.985730 ACAATTTGAGTGACATGATAACATTTT 57.014 25.926 0.00 0.00 34.15 1.82
286 287 9.985730 AATTTGAGTGACATGATAACATTTTGT 57.014 25.926 0.00 0.00 34.15 2.83
289 290 7.751732 TGAGTGACATGATAACATTTTGTAGC 58.248 34.615 0.00 0.00 34.15 3.58
290 291 7.390162 TGAGTGACATGATAACATTTTGTAGCA 59.610 33.333 0.00 0.00 34.15 3.49
291 292 8.109705 AGTGACATGATAACATTTTGTAGCAA 57.890 30.769 0.00 0.00 34.15 3.91
292 293 8.742777 AGTGACATGATAACATTTTGTAGCAAT 58.257 29.630 0.00 0.00 34.15 3.56
293 294 9.013490 GTGACATGATAACATTTTGTAGCAATC 57.987 33.333 0.00 0.00 34.15 2.67
294 295 8.959548 TGACATGATAACATTTTGTAGCAATCT 58.040 29.630 0.00 0.00 34.15 2.40
295 296 9.229784 GACATGATAACATTTTGTAGCAATCTG 57.770 33.333 0.00 0.00 34.15 2.90
296 297 8.959548 ACATGATAACATTTTGTAGCAATCTGA 58.040 29.630 0.00 0.00 34.15 3.27
297 298 9.961265 CATGATAACATTTTGTAGCAATCTGAT 57.039 29.630 0.00 0.00 34.15 2.90
300 301 9.884465 GATAACATTTTGTAGCAATCTGATACC 57.116 33.333 0.05 0.00 38.38 2.73
301 302 7.701539 AACATTTTGTAGCAATCTGATACCA 57.298 32.000 0.05 0.00 38.38 3.25
302 303 7.886629 ACATTTTGTAGCAATCTGATACCAT 57.113 32.000 0.05 0.00 38.38 3.55
303 304 7.709947 ACATTTTGTAGCAATCTGATACCATG 58.290 34.615 0.05 3.18 38.38 3.66
304 305 7.340232 ACATTTTGTAGCAATCTGATACCATGT 59.660 33.333 0.05 3.68 38.38 3.21
305 306 7.701539 TTTTGTAGCAATCTGATACCATGTT 57.298 32.000 0.05 0.00 38.38 2.71
306 307 8.800370 TTTTGTAGCAATCTGATACCATGTTA 57.200 30.769 0.05 0.00 38.38 2.41
307 308 8.800370 TTTGTAGCAATCTGATACCATGTTAA 57.200 30.769 0.05 0.00 38.38 2.01
308 309 7.786178 TGTAGCAATCTGATACCATGTTAAC 57.214 36.000 0.00 0.00 38.38 2.01
309 310 7.564793 TGTAGCAATCTGATACCATGTTAACT 58.435 34.615 7.22 0.00 38.38 2.24
310 311 8.046708 TGTAGCAATCTGATACCATGTTAACTT 58.953 33.333 7.22 0.00 38.38 2.66
311 312 7.325660 AGCAATCTGATACCATGTTAACTTG 57.674 36.000 13.22 13.22 0.00 3.16
312 313 6.886459 AGCAATCTGATACCATGTTAACTTGT 59.114 34.615 17.43 9.68 0.00 3.16
313 314 7.394359 AGCAATCTGATACCATGTTAACTTGTT 59.606 33.333 17.43 8.40 0.00 2.83
314 315 8.028938 GCAATCTGATACCATGTTAACTTGTTT 58.971 33.333 17.43 8.69 0.00 2.83
315 316 9.912634 CAATCTGATACCATGTTAACTTGTTTT 57.087 29.630 17.43 2.02 0.00 2.43
316 317 9.912634 AATCTGATACCATGTTAACTTGTTTTG 57.087 29.630 17.43 7.16 0.00 2.44
317 318 8.458573 TCTGATACCATGTTAACTTGTTTTGT 57.541 30.769 17.43 11.57 0.00 2.83
318 319 8.908903 TCTGATACCATGTTAACTTGTTTTGTT 58.091 29.630 17.43 0.00 0.00 2.83
319 320 9.528018 CTGATACCATGTTAACTTGTTTTGTTT 57.472 29.630 17.43 6.17 0.00 2.83
320 321 9.307121 TGATACCATGTTAACTTGTTTTGTTTG 57.693 29.630 17.43 5.13 0.00 2.93
321 322 9.522804 GATACCATGTTAACTTGTTTTGTTTGA 57.477 29.630 17.43 0.00 0.00 2.69
322 323 7.826260 ACCATGTTAACTTGTTTTGTTTGAG 57.174 32.000 17.43 3.99 0.00 3.02
323 324 7.607250 ACCATGTTAACTTGTTTTGTTTGAGA 58.393 30.769 17.43 0.00 0.00 3.27
324 325 7.544217 ACCATGTTAACTTGTTTTGTTTGAGAC 59.456 33.333 17.43 0.00 0.00 3.36
325 326 7.253618 CCATGTTAACTTGTTTTGTTTGAGACG 60.254 37.037 17.43 0.00 0.00 4.18
326 327 6.670233 TGTTAACTTGTTTTGTTTGAGACGT 58.330 32.000 7.22 0.00 0.00 4.34
327 328 6.579292 TGTTAACTTGTTTTGTTTGAGACGTG 59.421 34.615 7.22 0.00 0.00 4.49
328 329 3.498082 ACTTGTTTTGTTTGAGACGTGC 58.502 40.909 0.00 0.00 0.00 5.34
329 330 2.166741 TGTTTTGTTTGAGACGTGCG 57.833 45.000 0.00 0.00 0.00 5.34
330 331 1.465387 TGTTTTGTTTGAGACGTGCGT 59.535 42.857 0.00 0.00 0.00 5.24
331 332 2.095668 TGTTTTGTTTGAGACGTGCGTT 60.096 40.909 0.00 0.00 0.00 4.84
332 333 2.166741 TTTGTTTGAGACGTGCGTTG 57.833 45.000 0.00 0.00 0.00 4.10
333 334 0.247894 TTGTTTGAGACGTGCGTTGC 60.248 50.000 0.00 0.00 0.00 4.17
334 335 1.350319 GTTTGAGACGTGCGTTGCA 59.650 52.632 0.00 0.00 35.60 4.08
351 352 1.359848 GCACGTGCATGCTTACTAGT 58.640 50.000 34.52 0.00 42.62 2.57
352 353 1.061131 GCACGTGCATGCTTACTAGTG 59.939 52.381 34.52 18.13 42.62 2.74
353 354 2.337583 CACGTGCATGCTTACTAGTGT 58.662 47.619 20.33 0.09 0.00 3.55
354 355 2.092681 CACGTGCATGCTTACTAGTGTG 59.907 50.000 20.33 9.02 0.00 3.82
355 356 2.029380 ACGTGCATGCTTACTAGTGTGA 60.029 45.455 20.33 0.00 0.00 3.58
356 357 2.993220 CGTGCATGCTTACTAGTGTGAA 59.007 45.455 20.33 0.00 0.00 3.18
357 358 3.181530 CGTGCATGCTTACTAGTGTGAAC 60.182 47.826 20.33 2.49 0.00 3.18
358 359 3.745975 GTGCATGCTTACTAGTGTGAACA 59.254 43.478 20.33 0.00 0.00 3.18
359 360 4.213270 GTGCATGCTTACTAGTGTGAACAA 59.787 41.667 20.33 0.00 0.00 2.83
360 361 4.819088 TGCATGCTTACTAGTGTGAACAAA 59.181 37.500 20.33 0.00 0.00 2.83
361 362 5.049474 TGCATGCTTACTAGTGTGAACAAAG 60.049 40.000 20.33 0.05 0.00 2.77
362 363 5.617751 GCATGCTTACTAGTGTGAACAAAGG 60.618 44.000 11.37 0.00 0.00 3.11
363 364 5.284861 TGCTTACTAGTGTGAACAAAGGA 57.715 39.130 5.39 0.00 0.00 3.36
364 365 5.054477 TGCTTACTAGTGTGAACAAAGGAC 58.946 41.667 5.39 0.00 0.00 3.85
365 366 4.451435 GCTTACTAGTGTGAACAAAGGACC 59.549 45.833 5.39 0.00 0.00 4.46
366 367 3.107642 ACTAGTGTGAACAAAGGACCG 57.892 47.619 0.00 0.00 0.00 4.79
367 368 2.433239 ACTAGTGTGAACAAAGGACCGT 59.567 45.455 0.00 0.00 0.00 4.83
368 369 2.413310 AGTGTGAACAAAGGACCGTT 57.587 45.000 0.00 0.00 0.00 4.44
369 370 3.547054 AGTGTGAACAAAGGACCGTTA 57.453 42.857 0.00 0.00 0.00 3.18
370 371 3.200483 AGTGTGAACAAAGGACCGTTAC 58.800 45.455 0.00 0.00 0.00 2.50
371 372 3.118519 AGTGTGAACAAAGGACCGTTACT 60.119 43.478 0.00 0.00 0.00 2.24
372 373 3.001939 GTGTGAACAAAGGACCGTTACTG 59.998 47.826 0.00 0.00 0.00 2.74
373 374 3.200483 GTGAACAAAGGACCGTTACTGT 58.800 45.455 0.00 0.00 0.00 3.55
374 375 3.624410 GTGAACAAAGGACCGTTACTGTT 59.376 43.478 0.00 0.00 0.00 3.16
375 376 3.872771 TGAACAAAGGACCGTTACTGTTC 59.127 43.478 13.46 13.46 41.80 3.18
376 377 3.832615 ACAAAGGACCGTTACTGTTCT 57.167 42.857 0.00 0.00 0.00 3.01
377 378 4.146745 ACAAAGGACCGTTACTGTTCTT 57.853 40.909 0.00 0.00 32.85 2.52
378 379 4.520179 ACAAAGGACCGTTACTGTTCTTT 58.480 39.130 7.27 7.27 41.22 2.52
379 380 5.673514 ACAAAGGACCGTTACTGTTCTTTA 58.326 37.500 11.81 0.00 39.07 1.85
380 381 5.525012 ACAAAGGACCGTTACTGTTCTTTAC 59.475 40.000 11.81 0.00 39.07 2.01
381 382 4.942761 AGGACCGTTACTGTTCTTTACA 57.057 40.909 0.00 0.00 34.95 2.41
394 395 5.686753 TGTTCTTTACAGTATTGTGTGGGT 58.313 37.500 0.34 0.00 38.23 4.51
395 396 5.529430 TGTTCTTTACAGTATTGTGTGGGTG 59.471 40.000 0.34 0.00 38.23 4.61
396 397 5.298989 TCTTTACAGTATTGTGTGGGTGT 57.701 39.130 0.34 0.00 38.23 4.16
397 398 6.422344 TCTTTACAGTATTGTGTGGGTGTA 57.578 37.500 0.34 0.00 38.23 2.90
398 399 6.225318 TCTTTACAGTATTGTGTGGGTGTAC 58.775 40.000 0.34 0.00 38.23 2.90
399 400 5.548181 TTACAGTATTGTGTGGGTGTACA 57.452 39.130 0.34 0.00 38.23 2.90
400 401 4.002906 ACAGTATTGTGTGGGTGTACAG 57.997 45.455 0.00 0.00 35.83 2.74
401 402 3.644265 ACAGTATTGTGTGGGTGTACAGA 59.356 43.478 0.00 0.00 35.83 3.41
402 403 4.101898 ACAGTATTGTGTGGGTGTACAGAA 59.898 41.667 0.00 0.00 38.07 3.02
403 404 4.451096 CAGTATTGTGTGGGTGTACAGAAC 59.549 45.833 0.00 0.00 36.77 3.01
404 405 2.335316 TTGTGTGGGTGTACAGAACC 57.665 50.000 0.00 0.00 36.94 3.62
405 406 1.205055 TGTGTGGGTGTACAGAACCA 58.795 50.000 9.22 9.22 39.65 3.67
406 407 1.560146 TGTGTGGGTGTACAGAACCAA 59.440 47.619 13.67 0.00 39.65 3.67
407 408 2.218603 GTGTGGGTGTACAGAACCAAG 58.781 52.381 13.67 0.00 39.65 3.61
408 409 1.841277 TGTGGGTGTACAGAACCAAGT 59.159 47.619 13.67 0.00 39.65 3.16
409 410 2.240160 TGTGGGTGTACAGAACCAAGTT 59.760 45.455 13.67 0.00 39.65 2.66
410 411 3.284617 GTGGGTGTACAGAACCAAGTTT 58.715 45.455 13.67 0.00 39.65 2.66
411 412 3.314357 GTGGGTGTACAGAACCAAGTTTC 59.686 47.826 13.67 0.82 39.65 2.78
412 413 2.546789 GGGTGTACAGAACCAAGTTTCG 59.453 50.000 0.00 0.00 39.65 3.46
413 414 2.546789 GGTGTACAGAACCAAGTTTCGG 59.453 50.000 0.00 0.00 37.65 4.30
414 415 3.200483 GTGTACAGAACCAAGTTTCGGT 58.800 45.455 0.00 0.00 37.60 4.69
415 416 3.001939 GTGTACAGAACCAAGTTTCGGTG 59.998 47.826 0.00 0.00 36.67 4.94
416 417 1.675552 ACAGAACCAAGTTTCGGTGG 58.324 50.000 0.00 0.00 41.00 4.61
417 418 1.210967 ACAGAACCAAGTTTCGGTGGA 59.789 47.619 0.00 0.00 38.36 4.02
418 419 2.294074 CAGAACCAAGTTTCGGTGGAA 58.706 47.619 0.00 0.00 38.36 3.53
419 420 2.032924 CAGAACCAAGTTTCGGTGGAAC 59.967 50.000 0.00 0.00 38.36 3.62
420 421 2.018515 GAACCAAGTTTCGGTGGAACA 58.981 47.619 0.00 0.00 39.98 3.18
460 461 7.596749 ACATGAGGTAAAACTTTATCAGACG 57.403 36.000 0.00 0.00 0.00 4.18
461 462 7.383687 ACATGAGGTAAAACTTTATCAGACGA 58.616 34.615 0.00 0.00 0.00 4.20
462 463 7.331193 ACATGAGGTAAAACTTTATCAGACGAC 59.669 37.037 0.00 0.00 0.00 4.34
463 464 6.989659 TGAGGTAAAACTTTATCAGACGACT 58.010 36.000 0.00 0.00 0.00 4.18
464 465 6.866770 TGAGGTAAAACTTTATCAGACGACTG 59.133 38.462 8.68 8.68 44.66 3.51
465 466 5.638234 AGGTAAAACTTTATCAGACGACTGC 59.362 40.000 10.15 0.00 43.17 4.40
466 467 5.407387 GGTAAAACTTTATCAGACGACTGCA 59.593 40.000 10.15 0.15 43.17 4.41
467 468 4.992381 AAACTTTATCAGACGACTGCAC 57.008 40.909 10.15 0.00 43.17 4.57
468 469 3.660501 ACTTTATCAGACGACTGCACA 57.339 42.857 10.15 0.00 43.17 4.57
469 470 4.193826 ACTTTATCAGACGACTGCACAT 57.806 40.909 10.15 1.73 43.17 3.21
470 471 3.928992 ACTTTATCAGACGACTGCACATG 59.071 43.478 10.15 0.00 43.17 3.21
471 472 3.866883 TTATCAGACGACTGCACATGA 57.133 42.857 10.15 0.00 43.17 3.07
472 473 2.975732 ATCAGACGACTGCACATGAT 57.024 45.000 10.15 0.00 43.17 2.45
473 474 5.514274 TTATCAGACGACTGCACATGATA 57.486 39.130 10.15 0.00 43.17 2.15
474 475 4.597404 ATCAGACGACTGCACATGATAT 57.403 40.909 10.15 0.00 43.17 1.63
475 476 4.391405 TCAGACGACTGCACATGATATT 57.609 40.909 10.15 0.00 43.17 1.28
476 477 4.758688 TCAGACGACTGCACATGATATTT 58.241 39.130 10.15 0.00 43.17 1.40
477 478 4.567959 TCAGACGACTGCACATGATATTTG 59.432 41.667 10.15 0.00 43.17 2.32
478 479 3.310774 AGACGACTGCACATGATATTTGC 59.689 43.478 0.00 0.00 36.76 3.68
479 480 2.355756 ACGACTGCACATGATATTTGCC 59.644 45.455 0.00 0.00 35.26 4.52
480 481 2.355444 CGACTGCACATGATATTTGCCA 59.645 45.455 0.00 0.00 35.26 4.92
481 482 3.181498 CGACTGCACATGATATTTGCCAA 60.181 43.478 0.00 0.00 35.26 4.52
482 483 4.498513 CGACTGCACATGATATTTGCCAAT 60.499 41.667 0.00 0.00 35.26 3.16
483 484 4.689071 ACTGCACATGATATTTGCCAATG 58.311 39.130 0.00 0.00 35.26 2.82
484 485 3.459145 TGCACATGATATTTGCCAATGC 58.541 40.909 0.00 0.00 35.26 3.56
506 507 8.915057 ATGCATTGGACCTCATATAATATAGC 57.085 34.615 0.00 0.00 0.00 2.97
507 508 7.860584 TGCATTGGACCTCATATAATATAGCA 58.139 34.615 0.00 0.00 0.00 3.49
508 509 8.496916 TGCATTGGACCTCATATAATATAGCAT 58.503 33.333 0.00 0.00 0.00 3.79
509 510 8.781196 GCATTGGACCTCATATAATATAGCATG 58.219 37.037 0.00 0.00 0.00 4.06
510 511 9.842775 CATTGGACCTCATATAATATAGCATGT 57.157 33.333 0.00 0.00 0.00 3.21
578 580 7.558444 TGGTAGTTTGAGGTTGTAAATGAACTT 59.442 33.333 0.00 0.00 0.00 2.66
586 588 6.712276 AGGTTGTAAATGAACTTCCCTCTAG 58.288 40.000 0.00 0.00 0.00 2.43
720 723 6.013984 AGTCCCAAACTCGAGATAGGTTTTTA 60.014 38.462 21.68 0.00 30.02 1.52
722 725 7.983484 GTCCCAAACTCGAGATAGGTTTTTATA 59.017 37.037 21.68 0.00 31.87 0.98
742 745 0.250295 CTCCGGTGTGCTCCTTTTCA 60.250 55.000 0.00 0.00 0.00 2.69
744 747 0.535102 CCGGTGTGCTCCTTTTCAGT 60.535 55.000 0.00 0.00 0.00 3.41
745 748 0.588252 CGGTGTGCTCCTTTTCAGTG 59.412 55.000 0.00 0.00 0.00 3.66
746 749 1.680338 GGTGTGCTCCTTTTCAGTGT 58.320 50.000 0.00 0.00 0.00 3.55
747 750 2.805295 CGGTGTGCTCCTTTTCAGTGTA 60.805 50.000 0.00 0.00 0.00 2.90
929 933 3.307059 CCGAAGATTCCACCACTCTTTCT 60.307 47.826 0.00 0.00 29.64 2.52
930 934 4.081642 CCGAAGATTCCACCACTCTTTCTA 60.082 45.833 0.00 0.00 29.64 2.10
931 935 4.865365 CGAAGATTCCACCACTCTTTCTAC 59.135 45.833 0.00 0.00 29.64 2.59
932 936 5.566826 CGAAGATTCCACCACTCTTTCTACA 60.567 44.000 0.00 0.00 29.64 2.74
933 937 6.380079 AAGATTCCACCACTCTTTCTACAT 57.620 37.500 0.00 0.00 0.00 2.29
934 938 7.496346 AAGATTCCACCACTCTTTCTACATA 57.504 36.000 0.00 0.00 0.00 2.29
935 939 7.118496 AGATTCCACCACTCTTTCTACATAG 57.882 40.000 0.00 0.00 0.00 2.23
936 940 6.670027 AGATTCCACCACTCTTTCTACATAGT 59.330 38.462 0.00 0.00 0.00 2.12
937 941 7.839705 AGATTCCACCACTCTTTCTACATAGTA 59.160 37.037 0.00 0.00 0.00 1.82
938 942 7.973048 TTCCACCACTCTTTCTACATAGTAT 57.027 36.000 0.00 0.00 0.00 2.12
939 943 9.656323 ATTCCACCACTCTTTCTACATAGTATA 57.344 33.333 0.00 0.00 0.00 1.47
940 944 9.656323 TTCCACCACTCTTTCTACATAGTATAT 57.344 33.333 0.00 0.00 0.00 0.86
987 991 3.112075 CGCACCACGGCAGTAGTG 61.112 66.667 10.89 10.89 41.79 2.74
1032 1037 2.343758 GTCGAGGCAGGCAGTGAA 59.656 61.111 0.00 0.00 0.00 3.18
1224 1229 1.447663 CATCATCACCGTGCCGTCA 60.448 57.895 0.00 0.00 0.00 4.35
1225 1230 1.018752 CATCATCACCGTGCCGTCAA 61.019 55.000 0.00 0.00 0.00 3.18
1302 1307 1.658673 CGCCTTACGCCTAGGTAGG 59.341 63.158 11.31 12.85 46.42 3.18
1325 1331 0.187361 CTAGCTAGCTCCCCTGTCCT 59.813 60.000 23.26 0.00 0.00 3.85
1327 1333 1.687493 GCTAGCTCCCCTGTCCTGT 60.687 63.158 7.70 0.00 0.00 4.00
1329 1335 0.324738 CTAGCTCCCCTGTCCTGTGA 60.325 60.000 0.00 0.00 0.00 3.58
1330 1336 0.324738 TAGCTCCCCTGTCCTGTGAG 60.325 60.000 0.00 0.00 0.00 3.51
1331 1337 1.610673 GCTCCCCTGTCCTGTGAGA 60.611 63.158 0.00 0.00 0.00 3.27
1332 1338 1.612395 GCTCCCCTGTCCTGTGAGAG 61.612 65.000 0.00 0.00 0.00 3.20
1335 1341 2.985456 CCTGTCCTGTGAGAGGCC 59.015 66.667 0.00 0.00 44.28 5.19
1336 1342 1.915266 CCTGTCCTGTGAGAGGCCA 60.915 63.158 5.01 0.00 44.28 5.36
1337 1343 1.270414 CCTGTCCTGTGAGAGGCCAT 61.270 60.000 5.01 0.00 44.28 4.40
1338 1344 0.107800 CTGTCCTGTGAGAGGCCATG 60.108 60.000 5.01 0.00 42.47 3.66
1339 1345 0.837691 TGTCCTGTGAGAGGCCATGT 60.838 55.000 5.01 0.00 42.47 3.21
1340 1346 0.107945 GTCCTGTGAGAGGCCATGTC 60.108 60.000 5.01 0.00 42.47 3.06
1341 1347 1.222936 CCTGTGAGAGGCCATGTCC 59.777 63.158 5.01 0.00 34.01 4.02
1342 1348 1.556373 CCTGTGAGAGGCCATGTCCA 61.556 60.000 5.01 0.00 34.01 4.02
1343 1349 0.325933 CTGTGAGAGGCCATGTCCAA 59.674 55.000 5.01 0.00 0.00 3.53
1344 1350 0.994247 TGTGAGAGGCCATGTCCAAT 59.006 50.000 5.01 0.00 0.00 3.16
1345 1351 1.065199 TGTGAGAGGCCATGTCCAATC 60.065 52.381 5.01 0.00 0.00 2.67
1346 1352 1.065199 GTGAGAGGCCATGTCCAATCA 60.065 52.381 5.01 0.00 0.00 2.57
1348 1354 0.549950 AGAGGCCATGTCCAATCAGG 59.450 55.000 5.01 0.00 39.47 3.86
1349 1355 0.548031 GAGGCCATGTCCAATCAGGA 59.452 55.000 5.01 0.00 46.75 3.86
1362 1368 4.406972 TCCAATCAGGAGGACATTAGTCAG 59.593 45.833 0.00 0.00 43.65 3.51
1363 1369 4.406972 CCAATCAGGAGGACATTAGTCAGA 59.593 45.833 0.00 0.00 43.02 3.27
1371 1402 7.014711 CAGGAGGACATTAGTCAGAGCTAAATA 59.985 40.741 0.00 0.00 46.80 1.40
1403 1440 4.619973 GATTTCATTTGTTGTGTCTGGCA 58.380 39.130 0.00 0.00 0.00 4.92
1404 1441 4.462508 TTTCATTTGTTGTGTCTGGCAA 57.537 36.364 0.00 0.00 0.00 4.52
1418 1455 1.755395 GGCAATGGCAGGATCAGCA 60.755 57.895 0.58 0.00 43.71 4.41
1496 1533 2.693762 CCACAGCAGGCACCAATCG 61.694 63.158 0.00 0.00 0.00 3.34
1639 1676 1.684049 AGCTCAGGTCGGGGAAGAG 60.684 63.158 0.00 0.00 0.00 2.85
1719 1759 4.424711 GCAACCGGATCCTGGCCA 62.425 66.667 9.46 4.71 0.00 5.36
1739 1779 2.412112 GCGTCGGCGTTCCTCTAT 59.588 61.111 12.58 0.00 40.81 1.98
1808 1848 2.047844 GAGCTGTTCTGCGAGCCA 60.048 61.111 0.00 0.00 35.69 4.75
1875 1915 1.740025 GCTACACCAACTTCAGCATCC 59.260 52.381 0.00 0.00 32.46 3.51
2000 2060 0.178992 CCACTGGGGAAGACAAGCAA 60.179 55.000 0.00 0.00 40.01 3.91
2177 2237 2.267961 CGCTACCTGTTCCACCCC 59.732 66.667 0.00 0.00 0.00 4.95
2468 2556 1.504912 AGAGCATGTACTGGGAGCAT 58.495 50.000 0.00 0.00 0.00 3.79
2474 2562 1.521681 GTACTGGGAGCATGCGACC 60.522 63.158 22.11 22.11 0.00 4.79
2869 2965 7.126573 TGTTCCTCCTAATACATAACATGGTCA 59.873 37.037 0.00 0.00 33.60 4.02
2900 2996 0.670239 CTTTTGCCGGCAACCATTCC 60.670 55.000 40.36 1.49 35.46 3.01
3003 3101 2.312140 ACCTCCTTGCTAGGTCTACTGA 59.688 50.000 14.12 0.00 44.20 3.41
3011 3109 5.738619 TGCTAGGTCTACTGACAAATTGA 57.261 39.130 0.00 0.00 44.61 2.57
3069 3297 7.925483 GGGCTACAATGCATACAAATAAATCAA 59.075 33.333 0.00 0.00 34.04 2.57
3106 4625 5.428253 TCCAAGGTCAAATCTTATTCCTCG 58.572 41.667 0.00 0.00 0.00 4.63
3579 6147 5.408356 GTCTTAACAGGACATTTCTCGCTA 58.592 41.667 0.00 0.00 34.23 4.26
3613 7371 7.422399 GTTATTAACTCTTGAAGCAACCAACA 58.578 34.615 0.00 0.00 0.00 3.33
3614 7372 5.906113 TTAACTCTTGAAGCAACCAACAA 57.094 34.783 0.00 0.00 0.00 2.83
3615 7373 3.782889 ACTCTTGAAGCAACCAACAAC 57.217 42.857 0.00 0.00 0.00 3.32
3616 7374 2.097466 ACTCTTGAAGCAACCAACAACG 59.903 45.455 0.00 0.00 0.00 4.10
3617 7375 1.403679 TCTTGAAGCAACCAACAACGG 59.596 47.619 0.00 0.00 0.00 4.44
3618 7376 1.134175 CTTGAAGCAACCAACAACGGT 59.866 47.619 0.00 0.00 42.71 4.83
3708 7469 5.214417 TGATGTTTGTTGCAAAGAATCTCG 58.786 37.500 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.295825 TCCGCCTAAAATTCAATATCACATAAT 57.704 29.630 0.00 0.00 0.00 1.28
59 60 8.684386 TCCGCCTAAAATTCAATATCACATAA 57.316 30.769 0.00 0.00 0.00 1.90
60 61 8.154203 TCTCCGCCTAAAATTCAATATCACATA 58.846 33.333 0.00 0.00 0.00 2.29
61 62 6.998074 TCTCCGCCTAAAATTCAATATCACAT 59.002 34.615 0.00 0.00 0.00 3.21
62 63 6.260050 GTCTCCGCCTAAAATTCAATATCACA 59.740 38.462 0.00 0.00 0.00 3.58
63 64 6.260050 TGTCTCCGCCTAAAATTCAATATCAC 59.740 38.462 0.00 0.00 0.00 3.06
64 65 6.353323 TGTCTCCGCCTAAAATTCAATATCA 58.647 36.000 0.00 0.00 0.00 2.15
65 66 6.861065 TGTCTCCGCCTAAAATTCAATATC 57.139 37.500 0.00 0.00 0.00 1.63
66 67 6.772716 ACATGTCTCCGCCTAAAATTCAATAT 59.227 34.615 0.00 0.00 0.00 1.28
67 68 6.119536 ACATGTCTCCGCCTAAAATTCAATA 58.880 36.000 0.00 0.00 0.00 1.90
68 69 4.949856 ACATGTCTCCGCCTAAAATTCAAT 59.050 37.500 0.00 0.00 0.00 2.57
69 70 4.331968 ACATGTCTCCGCCTAAAATTCAA 58.668 39.130 0.00 0.00 0.00 2.69
70 71 3.950397 ACATGTCTCCGCCTAAAATTCA 58.050 40.909 0.00 0.00 0.00 2.57
71 72 4.965119 AACATGTCTCCGCCTAAAATTC 57.035 40.909 0.00 0.00 0.00 2.17
72 73 4.157840 GGAAACATGTCTCCGCCTAAAATT 59.842 41.667 1.56 0.00 0.00 1.82
73 74 3.694566 GGAAACATGTCTCCGCCTAAAAT 59.305 43.478 1.56 0.00 0.00 1.82
74 75 3.078837 GGAAACATGTCTCCGCCTAAAA 58.921 45.455 1.56 0.00 0.00 1.52
75 76 2.706890 GGAAACATGTCTCCGCCTAAA 58.293 47.619 1.56 0.00 0.00 1.85
76 77 2.396590 GGAAACATGTCTCCGCCTAA 57.603 50.000 1.56 0.00 0.00 2.69
82 83 2.691409 TGATCCGGAAACATGTCTCC 57.309 50.000 9.01 8.26 0.00 3.71
87 88 4.394610 TGTAACACATGATCCGGAAACATG 59.605 41.667 33.52 33.52 44.42 3.21
88 89 4.394920 GTGTAACACATGATCCGGAAACAT 59.605 41.667 9.01 14.89 36.32 2.71
89 90 3.749088 GTGTAACACATGATCCGGAAACA 59.251 43.478 9.01 13.01 36.32 2.83
90 91 3.749088 TGTGTAACACATGATCCGGAAAC 59.251 43.478 9.01 6.66 45.67 2.78
91 92 4.009370 TGTGTAACACATGATCCGGAAA 57.991 40.909 9.01 0.00 45.67 3.13
92 93 3.686916 TGTGTAACACATGATCCGGAA 57.313 42.857 9.01 0.00 45.67 4.30
105 106 1.257936 CCATATGAGCGCGTGTGTAAC 59.742 52.381 8.43 0.00 37.35 2.50
106 107 1.134936 ACCATATGAGCGCGTGTGTAA 60.135 47.619 8.43 0.00 0.00 2.41
107 108 0.458260 ACCATATGAGCGCGTGTGTA 59.542 50.000 8.43 0.00 0.00 2.90
108 109 0.391130 AACCATATGAGCGCGTGTGT 60.391 50.000 8.43 0.00 0.00 3.72
109 110 0.026674 CAACCATATGAGCGCGTGTG 59.973 55.000 8.43 0.00 0.00 3.82
110 111 0.391130 ACAACCATATGAGCGCGTGT 60.391 50.000 8.43 0.00 0.00 4.49
111 112 0.026674 CACAACCATATGAGCGCGTG 59.973 55.000 8.43 0.00 0.00 5.34
112 113 1.705337 GCACAACCATATGAGCGCGT 61.705 55.000 8.43 0.00 0.00 6.01
113 114 1.010797 GCACAACCATATGAGCGCG 60.011 57.895 0.00 0.00 0.00 6.86
114 115 0.664761 ATGCACAACCATATGAGCGC 59.335 50.000 3.65 0.00 39.39 5.92
115 116 3.809279 TCTTATGCACAACCATATGAGCG 59.191 43.478 3.65 0.00 39.39 5.03
116 117 5.756195 TTCTTATGCACAACCATATGAGC 57.244 39.130 3.65 1.06 34.99 4.26
117 118 6.968904 GTGTTTCTTATGCACAACCATATGAG 59.031 38.462 3.65 0.00 34.99 2.90
118 119 6.658816 AGTGTTTCTTATGCACAACCATATGA 59.341 34.615 3.65 0.00 35.75 2.15
119 120 6.855836 AGTGTTTCTTATGCACAACCATATG 58.144 36.000 0.00 0.00 35.75 1.78
120 121 7.466746 AAGTGTTTCTTATGCACAACCATAT 57.533 32.000 0.00 0.00 35.75 1.78
121 122 6.892658 AAGTGTTTCTTATGCACAACCATA 57.107 33.333 0.00 0.00 35.75 2.74
122 123 5.789643 AAGTGTTTCTTATGCACAACCAT 57.210 34.783 0.00 0.00 35.75 3.55
123 124 6.701145 TTAAGTGTTTCTTATGCACAACCA 57.299 33.333 0.00 0.00 38.27 3.67
124 125 7.116233 CCATTTAAGTGTTTCTTATGCACAACC 59.884 37.037 0.00 0.00 38.27 3.77
125 126 7.359181 GCCATTTAAGTGTTTCTTATGCACAAC 60.359 37.037 0.00 0.00 38.27 3.32
126 127 6.644592 GCCATTTAAGTGTTTCTTATGCACAA 59.355 34.615 0.00 0.00 38.27 3.33
127 128 6.015519 AGCCATTTAAGTGTTTCTTATGCACA 60.016 34.615 0.00 0.00 38.27 4.57
128 129 6.389906 AGCCATTTAAGTGTTTCTTATGCAC 58.610 36.000 0.00 0.00 38.27 4.57
129 130 6.588719 AGCCATTTAAGTGTTTCTTATGCA 57.411 33.333 0.00 0.00 38.27 3.96
130 131 5.739161 CGAGCCATTTAAGTGTTTCTTATGC 59.261 40.000 0.00 0.00 38.27 3.14
131 132 6.128007 ACCGAGCCATTTAAGTGTTTCTTATG 60.128 38.462 0.00 0.00 38.27 1.90
132 133 5.944007 ACCGAGCCATTTAAGTGTTTCTTAT 59.056 36.000 0.00 0.00 38.27 1.73
133 134 5.310451 ACCGAGCCATTTAAGTGTTTCTTA 58.690 37.500 0.00 0.00 37.56 2.10
134 135 4.142038 ACCGAGCCATTTAAGTGTTTCTT 58.858 39.130 0.00 0.00 39.89 2.52
135 136 3.751518 ACCGAGCCATTTAAGTGTTTCT 58.248 40.909 0.00 0.00 0.00 2.52
136 137 5.616488 TTACCGAGCCATTTAAGTGTTTC 57.384 39.130 0.00 0.00 0.00 2.78
137 138 6.263617 TCTTTTACCGAGCCATTTAAGTGTTT 59.736 34.615 0.00 0.00 0.00 2.83
138 139 5.766174 TCTTTTACCGAGCCATTTAAGTGTT 59.234 36.000 0.00 0.00 0.00 3.32
139 140 5.310451 TCTTTTACCGAGCCATTTAAGTGT 58.690 37.500 0.00 0.00 0.00 3.55
140 141 5.873179 TCTTTTACCGAGCCATTTAAGTG 57.127 39.130 0.00 0.00 0.00 3.16
141 142 6.002082 AGTTCTTTTACCGAGCCATTTAAGT 58.998 36.000 0.00 0.00 0.00 2.24
142 143 6.148811 TGAGTTCTTTTACCGAGCCATTTAAG 59.851 38.462 0.00 0.00 0.00 1.85
143 144 5.998981 TGAGTTCTTTTACCGAGCCATTTAA 59.001 36.000 0.00 0.00 0.00 1.52
144 145 5.410439 GTGAGTTCTTTTACCGAGCCATTTA 59.590 40.000 0.00 0.00 0.00 1.40
145 146 4.215613 GTGAGTTCTTTTACCGAGCCATTT 59.784 41.667 0.00 0.00 0.00 2.32
146 147 3.751698 GTGAGTTCTTTTACCGAGCCATT 59.248 43.478 0.00 0.00 0.00 3.16
147 148 3.008049 AGTGAGTTCTTTTACCGAGCCAT 59.992 43.478 0.00 0.00 0.00 4.40
148 149 2.367567 AGTGAGTTCTTTTACCGAGCCA 59.632 45.455 0.00 0.00 0.00 4.75
149 150 3.041508 AGTGAGTTCTTTTACCGAGCC 57.958 47.619 0.00 0.00 0.00 4.70
150 151 6.723131 ATTTAGTGAGTTCTTTTACCGAGC 57.277 37.500 0.00 0.00 0.00 5.03
203 204 9.588096 TCCAACACATGTATCATAGTCTATAGT 57.412 33.333 0.00 0.00 0.00 2.12
206 207 9.093458 TGATCCAACACATGTATCATAGTCTAT 57.907 33.333 0.00 0.00 0.00 1.98
207 208 8.477419 TGATCCAACACATGTATCATAGTCTA 57.523 34.615 0.00 0.00 0.00 2.59
208 209 7.288621 TCTGATCCAACACATGTATCATAGTCT 59.711 37.037 8.35 0.00 0.00 3.24
209 210 7.436933 TCTGATCCAACACATGTATCATAGTC 58.563 38.462 8.35 0.00 0.00 2.59
210 211 7.365497 TCTGATCCAACACATGTATCATAGT 57.635 36.000 8.35 0.00 0.00 2.12
211 212 8.667076 TTTCTGATCCAACACATGTATCATAG 57.333 34.615 8.35 0.27 0.00 2.23
213 214 9.803507 ATATTTCTGATCCAACACATGTATCAT 57.196 29.630 8.35 0.00 0.00 2.45
214 215 9.059260 CATATTTCTGATCCAACACATGTATCA 57.941 33.333 0.00 2.89 0.00 2.15
215 216 9.060347 ACATATTTCTGATCCAACACATGTATC 57.940 33.333 0.00 0.00 0.00 2.24
216 217 8.985315 ACATATTTCTGATCCAACACATGTAT 57.015 30.769 0.00 0.00 0.00 2.29
217 218 8.046107 TGACATATTTCTGATCCAACACATGTA 58.954 33.333 0.00 0.00 0.00 2.29
218 219 6.885918 TGACATATTTCTGATCCAACACATGT 59.114 34.615 0.00 0.00 0.00 3.21
219 220 7.148205 TGTGACATATTTCTGATCCAACACATG 60.148 37.037 0.00 0.00 0.00 3.21
220 221 6.885918 TGTGACATATTTCTGATCCAACACAT 59.114 34.615 0.00 0.00 0.00 3.21
221 222 6.149308 GTGTGACATATTTCTGATCCAACACA 59.851 38.462 0.00 0.00 0.00 3.72
222 223 6.372659 AGTGTGACATATTTCTGATCCAACAC 59.627 38.462 0.00 0.00 0.00 3.32
223 224 6.475504 AGTGTGACATATTTCTGATCCAACA 58.524 36.000 0.00 0.00 0.00 3.33
224 225 6.992063 AGTGTGACATATTTCTGATCCAAC 57.008 37.500 0.00 0.00 0.00 3.77
225 226 8.408043 AAAAGTGTGACATATTTCTGATCCAA 57.592 30.769 0.00 0.00 0.00 3.53
226 227 8.298854 CAAAAAGTGTGACATATTTCTGATCCA 58.701 33.333 0.00 0.00 0.00 3.41
227 228 8.514594 TCAAAAAGTGTGACATATTTCTGATCC 58.485 33.333 0.00 0.00 0.00 3.36
228 229 9.897744 TTCAAAAAGTGTGACATATTTCTGATC 57.102 29.630 3.99 0.00 0.00 2.92
258 259 9.985730 AAAATGTTATCATGTCACTCAAATTGT 57.014 25.926 0.00 0.00 34.19 2.71
260 261 9.985730 ACAAAATGTTATCATGTCACTCAAATT 57.014 25.926 0.00 0.00 34.19 1.82
263 264 8.236586 GCTACAAAATGTTATCATGTCACTCAA 58.763 33.333 0.00 0.00 34.19 3.02
264 265 7.390162 TGCTACAAAATGTTATCATGTCACTCA 59.610 33.333 0.00 0.00 34.19 3.41
265 266 7.751732 TGCTACAAAATGTTATCATGTCACTC 58.248 34.615 0.00 0.00 34.19 3.51
266 267 7.686438 TGCTACAAAATGTTATCATGTCACT 57.314 32.000 0.00 0.00 34.19 3.41
267 268 8.915871 ATTGCTACAAAATGTTATCATGTCAC 57.084 30.769 0.00 0.00 34.19 3.67
268 269 8.959548 AGATTGCTACAAAATGTTATCATGTCA 58.040 29.630 0.00 0.00 34.19 3.58
269 270 9.229784 CAGATTGCTACAAAATGTTATCATGTC 57.770 33.333 0.00 0.00 34.19 3.06
270 271 8.959548 TCAGATTGCTACAAAATGTTATCATGT 58.040 29.630 0.00 0.00 34.19 3.21
271 272 9.961265 ATCAGATTGCTACAAAATGTTATCATG 57.039 29.630 0.00 0.00 34.19 3.07
274 275 9.884465 GGTATCAGATTGCTACAAAATGTTATC 57.116 33.333 0.00 0.00 0.00 1.75
275 276 9.407380 TGGTATCAGATTGCTACAAAATGTTAT 57.593 29.630 0.00 0.00 0.00 1.89
276 277 8.800370 TGGTATCAGATTGCTACAAAATGTTA 57.200 30.769 0.00 0.00 0.00 2.41
277 278 7.701539 TGGTATCAGATTGCTACAAAATGTT 57.298 32.000 0.00 0.00 0.00 2.71
278 279 7.340232 ACATGGTATCAGATTGCTACAAAATGT 59.660 33.333 0.00 0.00 0.00 2.71
279 280 7.709947 ACATGGTATCAGATTGCTACAAAATG 58.290 34.615 0.00 0.00 0.00 2.32
280 281 7.886629 ACATGGTATCAGATTGCTACAAAAT 57.113 32.000 0.00 0.00 0.00 1.82
281 282 7.701539 AACATGGTATCAGATTGCTACAAAA 57.298 32.000 0.00 0.00 0.00 2.44
282 283 8.673711 GTTAACATGGTATCAGATTGCTACAAA 58.326 33.333 0.00 0.00 0.00 2.83
283 284 8.046708 AGTTAACATGGTATCAGATTGCTACAA 58.953 33.333 8.61 0.00 0.00 2.41
284 285 7.564793 AGTTAACATGGTATCAGATTGCTACA 58.435 34.615 8.61 0.00 0.00 2.74
285 286 8.338259 CAAGTTAACATGGTATCAGATTGCTAC 58.662 37.037 8.61 0.00 0.00 3.58
286 287 8.046708 ACAAGTTAACATGGTATCAGATTGCTA 58.953 33.333 14.77 0.00 0.00 3.49
287 288 6.886459 ACAAGTTAACATGGTATCAGATTGCT 59.114 34.615 14.77 0.00 0.00 3.91
288 289 7.088589 ACAAGTTAACATGGTATCAGATTGC 57.911 36.000 14.77 0.00 0.00 3.56
289 290 9.912634 AAAACAAGTTAACATGGTATCAGATTG 57.087 29.630 14.77 5.28 0.00 2.67
290 291 9.912634 CAAAACAAGTTAACATGGTATCAGATT 57.087 29.630 14.77 0.00 0.00 2.40
291 292 9.077885 ACAAAACAAGTTAACATGGTATCAGAT 57.922 29.630 14.77 0.00 0.00 2.90
292 293 8.458573 ACAAAACAAGTTAACATGGTATCAGA 57.541 30.769 14.77 0.00 0.00 3.27
293 294 9.528018 AAACAAAACAAGTTAACATGGTATCAG 57.472 29.630 14.77 2.83 0.00 2.90
294 295 9.307121 CAAACAAAACAAGTTAACATGGTATCA 57.693 29.630 14.77 0.00 0.00 2.15
295 296 9.522804 TCAAACAAAACAAGTTAACATGGTATC 57.477 29.630 14.77 0.00 0.00 2.24
296 297 9.528018 CTCAAACAAAACAAGTTAACATGGTAT 57.472 29.630 14.77 0.00 0.00 2.73
297 298 8.740906 TCTCAAACAAAACAAGTTAACATGGTA 58.259 29.630 14.77 0.00 0.00 3.25
298 299 7.544217 GTCTCAAACAAAACAAGTTAACATGGT 59.456 33.333 14.77 5.64 0.00 3.55
299 300 7.253618 CGTCTCAAACAAAACAAGTTAACATGG 60.254 37.037 14.77 3.10 0.00 3.66
300 301 7.272515 ACGTCTCAAACAAAACAAGTTAACATG 59.727 33.333 8.61 8.93 0.00 3.21
301 302 7.272515 CACGTCTCAAACAAAACAAGTTAACAT 59.727 33.333 8.61 0.00 0.00 2.71
302 303 6.579292 CACGTCTCAAACAAAACAAGTTAACA 59.421 34.615 8.61 0.00 0.00 2.41
303 304 6.451960 GCACGTCTCAAACAAAACAAGTTAAC 60.452 38.462 0.00 0.00 0.00 2.01
304 305 5.569823 GCACGTCTCAAACAAAACAAGTTAA 59.430 36.000 0.00 0.00 0.00 2.01
305 306 5.090083 GCACGTCTCAAACAAAACAAGTTA 58.910 37.500 0.00 0.00 0.00 2.24
306 307 3.917985 GCACGTCTCAAACAAAACAAGTT 59.082 39.130 0.00 0.00 0.00 2.66
307 308 3.498082 GCACGTCTCAAACAAAACAAGT 58.502 40.909 0.00 0.00 0.00 3.16
308 309 2.525891 CGCACGTCTCAAACAAAACAAG 59.474 45.455 0.00 0.00 0.00 3.16
309 310 2.095668 ACGCACGTCTCAAACAAAACAA 60.096 40.909 0.00 0.00 0.00 2.83
310 311 1.465387 ACGCACGTCTCAAACAAAACA 59.535 42.857 0.00 0.00 0.00 2.83
311 312 2.168201 ACGCACGTCTCAAACAAAAC 57.832 45.000 0.00 0.00 0.00 2.43
312 313 2.510874 CAACGCACGTCTCAAACAAAA 58.489 42.857 0.00 0.00 0.00 2.44
313 314 1.792273 GCAACGCACGTCTCAAACAAA 60.792 47.619 0.00 0.00 0.00 2.83
314 315 0.247894 GCAACGCACGTCTCAAACAA 60.248 50.000 0.00 0.00 0.00 2.83
315 316 1.350319 GCAACGCACGTCTCAAACA 59.650 52.632 0.00 0.00 0.00 2.83
316 317 1.350319 TGCAACGCACGTCTCAAAC 59.650 52.632 0.00 0.00 31.71 2.93
317 318 3.801129 TGCAACGCACGTCTCAAA 58.199 50.000 0.00 0.00 31.71 2.69
332 333 1.061131 CACTAGTAAGCATGCACGTGC 59.939 52.381 33.11 33.11 45.38 5.34
333 334 2.092681 CACACTAGTAAGCATGCACGTG 59.907 50.000 21.98 12.28 0.00 4.49
334 335 2.029380 TCACACTAGTAAGCATGCACGT 60.029 45.455 21.98 7.14 0.00 4.49
335 336 2.606108 TCACACTAGTAAGCATGCACG 58.394 47.619 21.98 3.52 0.00 5.34
336 337 3.745975 TGTTCACACTAGTAAGCATGCAC 59.254 43.478 21.98 10.48 0.00 4.57
337 338 4.001618 TGTTCACACTAGTAAGCATGCA 57.998 40.909 21.98 0.00 0.00 3.96
338 339 5.356882 TTTGTTCACACTAGTAAGCATGC 57.643 39.130 10.51 10.51 0.00 4.06
339 340 5.700832 TCCTTTGTTCACACTAGTAAGCATG 59.299 40.000 0.00 0.00 0.00 4.06
340 341 5.701290 GTCCTTTGTTCACACTAGTAAGCAT 59.299 40.000 0.00 0.00 0.00 3.79
341 342 5.054477 GTCCTTTGTTCACACTAGTAAGCA 58.946 41.667 0.00 0.00 0.00 3.91
342 343 4.451435 GGTCCTTTGTTCACACTAGTAAGC 59.549 45.833 0.00 0.00 0.00 3.09
343 344 4.684703 CGGTCCTTTGTTCACACTAGTAAG 59.315 45.833 0.00 0.00 0.00 2.34
344 345 4.099881 ACGGTCCTTTGTTCACACTAGTAA 59.900 41.667 0.00 0.00 0.00 2.24
345 346 3.638160 ACGGTCCTTTGTTCACACTAGTA 59.362 43.478 0.00 0.00 0.00 1.82
346 347 2.433239 ACGGTCCTTTGTTCACACTAGT 59.567 45.455 0.00 0.00 0.00 2.57
347 348 3.107642 ACGGTCCTTTGTTCACACTAG 57.892 47.619 0.00 0.00 0.00 2.57
348 349 3.547054 AACGGTCCTTTGTTCACACTA 57.453 42.857 0.00 0.00 0.00 2.74
349 350 2.413310 AACGGTCCTTTGTTCACACT 57.587 45.000 0.00 0.00 0.00 3.55
350 351 3.001939 CAGTAACGGTCCTTTGTTCACAC 59.998 47.826 0.00 0.00 0.00 3.82
351 352 3.199677 CAGTAACGGTCCTTTGTTCACA 58.800 45.455 0.00 0.00 0.00 3.58
352 353 3.200483 ACAGTAACGGTCCTTTGTTCAC 58.800 45.455 0.00 0.00 0.00 3.18
353 354 3.547054 ACAGTAACGGTCCTTTGTTCA 57.453 42.857 0.00 0.00 0.00 3.18
354 355 4.124970 AGAACAGTAACGGTCCTTTGTTC 58.875 43.478 14.55 14.55 42.72 3.18
355 356 4.146745 AGAACAGTAACGGTCCTTTGTT 57.853 40.909 0.00 0.00 0.00 2.83
356 357 3.832615 AGAACAGTAACGGTCCTTTGT 57.167 42.857 0.00 0.00 0.00 2.83
357 358 5.524646 TGTAAAGAACAGTAACGGTCCTTTG 59.475 40.000 0.00 0.00 33.01 2.77
358 359 5.673514 TGTAAAGAACAGTAACGGTCCTTT 58.326 37.500 0.00 0.00 33.01 3.11
359 360 5.280654 TGTAAAGAACAGTAACGGTCCTT 57.719 39.130 0.00 0.00 33.01 3.36
360 361 4.942761 TGTAAAGAACAGTAACGGTCCT 57.057 40.909 0.00 0.00 33.01 3.85
371 372 5.529430 CACCCACACAATACTGTAAAGAACA 59.471 40.000 0.00 0.00 33.22 3.18
372 373 5.529800 ACACCCACACAATACTGTAAAGAAC 59.470 40.000 0.00 0.00 33.22 3.01
373 374 5.686753 ACACCCACACAATACTGTAAAGAA 58.313 37.500 0.00 0.00 33.22 2.52
374 375 5.298989 ACACCCACACAATACTGTAAAGA 57.701 39.130 0.00 0.00 33.22 2.52
375 376 5.992829 TGTACACCCACACAATACTGTAAAG 59.007 40.000 0.00 0.00 33.22 1.85
376 377 5.926663 TGTACACCCACACAATACTGTAAA 58.073 37.500 0.00 0.00 33.22 2.01
377 378 5.304871 TCTGTACACCCACACAATACTGTAA 59.695 40.000 0.00 0.00 33.22 2.41
378 379 4.833938 TCTGTACACCCACACAATACTGTA 59.166 41.667 0.00 0.00 33.22 2.74
379 380 3.644265 TCTGTACACCCACACAATACTGT 59.356 43.478 0.00 0.00 35.63 3.55
380 381 4.265904 TCTGTACACCCACACAATACTG 57.734 45.455 0.00 0.00 0.00 2.74
381 382 4.504340 GGTTCTGTACACCCACACAATACT 60.504 45.833 0.00 0.00 0.00 2.12
382 383 3.749609 GGTTCTGTACACCCACACAATAC 59.250 47.826 0.00 0.00 0.00 1.89
383 384 3.391626 TGGTTCTGTACACCCACACAATA 59.608 43.478 0.00 0.00 32.71 1.90
384 385 2.173782 TGGTTCTGTACACCCACACAAT 59.826 45.455 0.00 0.00 32.71 2.71
385 386 1.560146 TGGTTCTGTACACCCACACAA 59.440 47.619 0.00 0.00 32.71 3.33
386 387 1.205055 TGGTTCTGTACACCCACACA 58.795 50.000 0.00 0.00 32.71 3.72
387 388 2.218603 CTTGGTTCTGTACACCCACAC 58.781 52.381 0.00 0.00 32.71 3.82
388 389 1.841277 ACTTGGTTCTGTACACCCACA 59.159 47.619 0.00 0.00 32.71 4.17
389 390 2.632987 ACTTGGTTCTGTACACCCAC 57.367 50.000 0.00 0.00 32.71 4.61
390 391 3.547746 GAAACTTGGTTCTGTACACCCA 58.452 45.455 0.00 0.00 32.71 4.51
391 392 2.546789 CGAAACTTGGTTCTGTACACCC 59.453 50.000 0.00 0.00 32.71 4.61
392 393 2.546789 CCGAAACTTGGTTCTGTACACC 59.453 50.000 0.00 0.00 34.52 4.16
393 394 3.001939 CACCGAAACTTGGTTCTGTACAC 59.998 47.826 0.00 0.00 37.72 2.90
394 395 3.199677 CACCGAAACTTGGTTCTGTACA 58.800 45.455 0.00 0.00 37.72 2.90
395 396 2.546789 CCACCGAAACTTGGTTCTGTAC 59.453 50.000 0.00 0.00 37.72 2.90
396 397 2.435069 TCCACCGAAACTTGGTTCTGTA 59.565 45.455 0.00 0.00 37.72 2.74
397 398 1.210967 TCCACCGAAACTTGGTTCTGT 59.789 47.619 0.00 0.00 37.72 3.41
398 399 1.961793 TCCACCGAAACTTGGTTCTG 58.038 50.000 0.00 0.00 37.72 3.02
399 400 2.294979 GTTCCACCGAAACTTGGTTCT 58.705 47.619 0.00 0.00 37.72 3.01
400 401 2.018515 TGTTCCACCGAAACTTGGTTC 58.981 47.619 0.00 0.00 37.72 3.62
401 402 1.746787 GTGTTCCACCGAAACTTGGTT 59.253 47.619 0.00 0.00 37.72 3.67
402 403 1.340211 TGTGTTCCACCGAAACTTGGT 60.340 47.619 0.00 0.00 41.47 3.67
403 404 1.384525 TGTGTTCCACCGAAACTTGG 58.615 50.000 0.00 0.00 32.73 3.61
404 405 3.495670 TTTGTGTTCCACCGAAACTTG 57.504 42.857 0.00 0.00 32.73 3.16
405 406 6.399639 AATATTTGTGTTCCACCGAAACTT 57.600 33.333 0.00 0.00 32.73 2.66
406 407 6.399639 AAATATTTGTGTTCCACCGAAACT 57.600 33.333 0.00 0.00 32.73 2.66
407 408 7.364970 AGTAAATATTTGTGTTCCACCGAAAC 58.635 34.615 11.05 0.00 32.73 2.78
408 409 7.513371 AGTAAATATTTGTGTTCCACCGAAA 57.487 32.000 11.05 0.00 32.73 3.46
409 410 7.513371 AAGTAAATATTTGTGTTCCACCGAA 57.487 32.000 11.05 0.00 32.73 4.30
410 411 8.618702 TTAAGTAAATATTTGTGTTCCACCGA 57.381 30.769 11.05 0.00 32.73 4.69
411 412 9.120422 GTTTAAGTAAATATTTGTGTTCCACCG 57.880 33.333 11.05 0.00 32.73 4.94
412 413 9.968870 TGTTTAAGTAAATATTTGTGTTCCACC 57.031 29.630 11.05 0.00 32.73 4.61
434 435 8.504005 CGTCTGATAAAGTTTTACCTCATGTTT 58.496 33.333 0.00 0.00 0.00 2.83
435 436 7.876068 TCGTCTGATAAAGTTTTACCTCATGTT 59.124 33.333 0.00 0.00 0.00 2.71
436 437 7.331193 GTCGTCTGATAAAGTTTTACCTCATGT 59.669 37.037 0.00 0.00 0.00 3.21
437 438 7.545965 AGTCGTCTGATAAAGTTTTACCTCATG 59.454 37.037 0.00 0.00 0.00 3.07
438 439 7.545965 CAGTCGTCTGATAAAGTTTTACCTCAT 59.454 37.037 3.36 0.00 43.76 2.90
439 440 6.866770 CAGTCGTCTGATAAAGTTTTACCTCA 59.133 38.462 3.36 0.00 43.76 3.86
440 441 6.183360 GCAGTCGTCTGATAAAGTTTTACCTC 60.183 42.308 14.02 0.00 43.76 3.85
441 442 5.638234 GCAGTCGTCTGATAAAGTTTTACCT 59.362 40.000 14.02 0.00 43.76 3.08
442 443 5.407387 TGCAGTCGTCTGATAAAGTTTTACC 59.593 40.000 14.02 0.00 43.76 2.85
443 444 6.073980 TGTGCAGTCGTCTGATAAAGTTTTAC 60.074 38.462 14.02 0.00 43.76 2.01
444 445 5.986741 TGTGCAGTCGTCTGATAAAGTTTTA 59.013 36.000 14.02 0.00 43.76 1.52
445 446 4.814234 TGTGCAGTCGTCTGATAAAGTTTT 59.186 37.500 14.02 0.00 43.76 2.43
446 447 4.377021 TGTGCAGTCGTCTGATAAAGTTT 58.623 39.130 14.02 0.00 43.76 2.66
447 448 3.990092 TGTGCAGTCGTCTGATAAAGTT 58.010 40.909 14.02 0.00 43.76 2.66
448 449 3.660501 TGTGCAGTCGTCTGATAAAGT 57.339 42.857 14.02 0.00 43.76 2.66
449 450 4.176271 TCATGTGCAGTCGTCTGATAAAG 58.824 43.478 14.02 0.36 43.76 1.85
450 451 4.186856 TCATGTGCAGTCGTCTGATAAA 57.813 40.909 14.02 0.00 43.76 1.40
451 452 3.866883 TCATGTGCAGTCGTCTGATAA 57.133 42.857 14.02 0.00 43.76 1.75
452 453 5.712152 ATATCATGTGCAGTCGTCTGATA 57.288 39.130 14.02 2.18 43.76 2.15
453 454 2.975732 ATCATGTGCAGTCGTCTGAT 57.024 45.000 14.02 0.00 43.76 2.90
454 455 4.391405 AATATCATGTGCAGTCGTCTGA 57.609 40.909 14.02 0.00 43.76 3.27
455 456 4.784394 GCAAATATCATGTGCAGTCGTCTG 60.784 45.833 5.22 5.22 43.87 3.51
456 457 3.310774 GCAAATATCATGTGCAGTCGTCT 59.689 43.478 0.68 0.00 38.19 4.18
457 458 3.546815 GGCAAATATCATGTGCAGTCGTC 60.547 47.826 7.45 0.00 40.12 4.20
458 459 2.355756 GGCAAATATCATGTGCAGTCGT 59.644 45.455 7.45 0.00 40.12 4.34
459 460 2.355444 TGGCAAATATCATGTGCAGTCG 59.645 45.455 7.45 0.00 40.12 4.18
460 461 4.374843 TTGGCAAATATCATGTGCAGTC 57.625 40.909 0.00 0.00 40.12 3.51
461 462 4.689071 CATTGGCAAATATCATGTGCAGT 58.311 39.130 3.01 0.00 40.12 4.40
462 463 3.493129 GCATTGGCAAATATCATGTGCAG 59.507 43.478 3.01 0.00 40.12 4.41
463 464 3.459145 GCATTGGCAAATATCATGTGCA 58.541 40.909 3.01 0.00 40.12 4.57
480 481 9.347240 GCTATATTATATGAGGTCCAATGCATT 57.653 33.333 5.99 5.99 0.00 3.56
481 482 8.496916 TGCTATATTATATGAGGTCCAATGCAT 58.503 33.333 0.00 0.00 0.00 3.96
482 483 7.860584 TGCTATATTATATGAGGTCCAATGCA 58.139 34.615 0.00 0.00 0.00 3.96
483 484 8.781196 CATGCTATATTATATGAGGTCCAATGC 58.219 37.037 0.00 0.00 0.00 3.56
484 485 9.842775 ACATGCTATATTATATGAGGTCCAATG 57.157 33.333 0.00 0.00 0.00 2.82
504 505 9.461312 TGAAATACCAATCTACTTAAACATGCT 57.539 29.630 0.00 0.00 0.00 3.79
505 506 9.722056 CTGAAATACCAATCTACTTAAACATGC 57.278 33.333 0.00 0.00 0.00 4.06
507 508 9.408648 CCCTGAAATACCAATCTACTTAAACAT 57.591 33.333 0.00 0.00 0.00 2.71
508 509 8.387813 ACCCTGAAATACCAATCTACTTAAACA 58.612 33.333 0.00 0.00 0.00 2.83
509 510 8.803397 ACCCTGAAATACCAATCTACTTAAAC 57.197 34.615 0.00 0.00 0.00 2.01
510 511 9.238368 CAACCCTGAAATACCAATCTACTTAAA 57.762 33.333 0.00 0.00 0.00 1.52
511 512 8.387813 ACAACCCTGAAATACCAATCTACTTAA 58.612 33.333 0.00 0.00 0.00 1.85
512 513 7.827236 CACAACCCTGAAATACCAATCTACTTA 59.173 37.037 0.00 0.00 0.00 2.24
513 514 6.659242 CACAACCCTGAAATACCAATCTACTT 59.341 38.462 0.00 0.00 0.00 2.24
514 515 6.180472 CACAACCCTGAAATACCAATCTACT 58.820 40.000 0.00 0.00 0.00 2.57
515 516 5.944007 ACACAACCCTGAAATACCAATCTAC 59.056 40.000 0.00 0.00 0.00 2.59
516 517 6.134535 ACACAACCCTGAAATACCAATCTA 57.865 37.500 0.00 0.00 0.00 1.98
517 518 4.998051 ACACAACCCTGAAATACCAATCT 58.002 39.130 0.00 0.00 0.00 2.40
518 519 5.722021 AACACAACCCTGAAATACCAATC 57.278 39.130 0.00 0.00 0.00 2.67
519 520 6.493189 AAAACACAACCCTGAAATACCAAT 57.507 33.333 0.00 0.00 0.00 3.16
520 521 5.941555 AAAACACAACCCTGAAATACCAA 57.058 34.783 0.00 0.00 0.00 3.67
521 522 6.366340 TCTAAAACACAACCCTGAAATACCA 58.634 36.000 0.00 0.00 0.00 3.25
522 523 6.887626 TCTAAAACACAACCCTGAAATACC 57.112 37.500 0.00 0.00 0.00 2.73
523 524 9.758651 AATTTCTAAAACACAACCCTGAAATAC 57.241 29.630 0.00 0.00 33.52 1.89
524 525 9.757227 CAATTTCTAAAACACAACCCTGAAATA 57.243 29.630 0.00 0.00 33.52 1.40
578 580 5.725551 TTTGCCCAAAATATCTAGAGGGA 57.274 39.130 15.06 0.00 38.60 4.20
586 588 5.994668 TGAGGTTGTTTTTGCCCAAAATATC 59.005 36.000 6.98 3.11 39.69 1.63
684 687 3.405689 TTGGGACTAGCGCAAACAA 57.594 47.368 11.47 2.88 45.15 2.83
720 723 1.276622 AAAGGAGCACACCGGAGTAT 58.723 50.000 9.46 0.00 34.73 2.12
722 725 0.250338 GAAAAGGAGCACACCGGAGT 60.250 55.000 9.46 2.22 34.73 3.85
744 747 1.612676 ACGGACTAGTGCAGTGTACA 58.387 50.000 15.20 0.00 37.72 2.90
745 748 2.719426 AACGGACTAGTGCAGTGTAC 57.281 50.000 15.20 2.72 37.72 2.90
746 749 3.148412 TGTAACGGACTAGTGCAGTGTA 58.852 45.455 15.20 6.30 37.72 2.90
747 750 1.958579 TGTAACGGACTAGTGCAGTGT 59.041 47.619 15.20 1.35 37.72 3.55
848 852 1.732259 CGTCGGATGAGTTTTTGGGAG 59.268 52.381 0.00 0.00 0.00 4.30
929 933 7.654923 CGGCGTACAGGATCTATATACTATGTA 59.345 40.741 0.00 0.00 0.00 2.29
930 934 6.482641 CGGCGTACAGGATCTATATACTATGT 59.517 42.308 0.00 0.00 0.00 2.29
931 935 6.566187 GCGGCGTACAGGATCTATATACTATG 60.566 46.154 9.37 0.00 0.00 2.23
932 936 5.469421 GCGGCGTACAGGATCTATATACTAT 59.531 44.000 9.37 0.00 0.00 2.12
933 937 4.813161 GCGGCGTACAGGATCTATATACTA 59.187 45.833 9.37 0.00 0.00 1.82
934 938 3.626670 GCGGCGTACAGGATCTATATACT 59.373 47.826 9.37 0.00 0.00 2.12
935 939 3.243002 GGCGGCGTACAGGATCTATATAC 60.243 52.174 9.37 0.00 0.00 1.47
936 940 2.947652 GGCGGCGTACAGGATCTATATA 59.052 50.000 9.37 0.00 0.00 0.86
937 941 1.749634 GGCGGCGTACAGGATCTATAT 59.250 52.381 9.37 0.00 0.00 0.86
938 942 1.171308 GGCGGCGTACAGGATCTATA 58.829 55.000 9.37 0.00 0.00 1.31
939 943 1.863662 CGGCGGCGTACAGGATCTAT 61.864 60.000 24.74 0.00 0.00 1.98
940 944 2.549198 CGGCGGCGTACAGGATCTA 61.549 63.158 24.74 0.00 0.00 1.98
941 945 3.900892 CGGCGGCGTACAGGATCT 61.901 66.667 24.74 0.00 0.00 2.75
942 946 4.203076 ACGGCGGCGTACAGGATC 62.203 66.667 36.78 0.00 0.00 3.36
943 947 4.203076 GACGGCGGCGTACAGGAT 62.203 66.667 37.57 13.25 0.00 3.24
959 963 1.080772 GTGGTGCGTGATCTGACGA 60.081 57.895 9.56 0.00 42.10 4.20
982 986 2.536997 ATTGGTCGCTGGGCCACTAC 62.537 60.000 0.00 0.17 34.02 2.73
1200 1205 1.718757 GCACGGTGATGATGAAGGCC 61.719 60.000 13.29 0.00 0.00 5.19
1224 1229 0.736325 CGCCGAAGAAGACGACCATT 60.736 55.000 0.00 0.00 0.00 3.16
1225 1230 1.153823 CGCCGAAGAAGACGACCAT 60.154 57.895 0.00 0.00 0.00 3.55
1325 1331 0.994247 ATTGGACATGGCCTCTCACA 59.006 50.000 21.02 0.00 0.00 3.58
1327 1333 1.211212 CTGATTGGACATGGCCTCTCA 59.789 52.381 21.02 19.30 0.00 3.27
1329 1335 0.549950 CCTGATTGGACATGGCCTCT 59.450 55.000 21.02 5.53 38.35 3.69
1330 1336 0.548031 TCCTGATTGGACATGGCCTC 59.452 55.000 21.02 9.79 40.56 4.70
1331 1337 0.549950 CTCCTGATTGGACATGGCCT 59.450 55.000 21.02 0.00 40.56 5.19
1332 1338 0.466922 CCTCCTGATTGGACATGGCC 60.467 60.000 12.04 12.04 40.56 5.36
1333 1339 0.548031 TCCTCCTGATTGGACATGGC 59.452 55.000 0.00 0.00 40.56 4.40
1339 1345 4.361783 TGACTAATGTCCTCCTGATTGGA 58.638 43.478 0.00 0.00 42.28 3.53
1340 1346 4.406972 TCTGACTAATGTCCTCCTGATTGG 59.593 45.833 0.00 0.00 42.28 3.16
1341 1347 5.599732 CTCTGACTAATGTCCTCCTGATTG 58.400 45.833 0.00 0.00 42.28 2.67
1342 1348 4.100808 GCTCTGACTAATGTCCTCCTGATT 59.899 45.833 0.00 0.00 42.28 2.57
1343 1349 3.640967 GCTCTGACTAATGTCCTCCTGAT 59.359 47.826 0.00 0.00 42.28 2.90
1344 1350 3.027412 GCTCTGACTAATGTCCTCCTGA 58.973 50.000 0.00 0.00 42.28 3.86
1345 1351 3.030291 AGCTCTGACTAATGTCCTCCTG 58.970 50.000 0.00 0.00 42.28 3.86
1346 1352 3.396685 AGCTCTGACTAATGTCCTCCT 57.603 47.619 0.00 0.00 42.28 3.69
1348 1354 9.771534 AATTATTTAGCTCTGACTAATGTCCTC 57.228 33.333 0.00 0.00 42.28 3.71
1355 1361 9.731819 CGTCAGTAATTATTTAGCTCTGACTAA 57.268 33.333 19.58 2.36 44.24 2.24
1356 1362 9.117183 TCGTCAGTAATTATTTAGCTCTGACTA 57.883 33.333 19.58 11.56 44.24 2.59
1358 1364 8.804688 ATCGTCAGTAATTATTTAGCTCTGAC 57.195 34.615 15.20 15.20 43.51 3.51
1359 1365 9.817809 AAATCGTCAGTAATTATTTAGCTCTGA 57.182 29.630 0.00 0.00 0.00 3.27
1371 1402 8.134895 ACACAACAAATGAAATCGTCAGTAATT 58.865 29.630 0.00 0.00 40.43 1.40
1403 1440 0.395311 CTGGTGCTGATCCTGCCATT 60.395 55.000 5.52 0.00 0.00 3.16
1404 1441 1.226542 CTGGTGCTGATCCTGCCAT 59.773 57.895 5.52 0.00 0.00 4.40
1426 1463 2.811317 CGCCGAGAAGCCTGTCAC 60.811 66.667 0.00 0.00 0.00 3.67
1496 1533 4.910585 CTCCGGCGGTACATGGCC 62.911 72.222 27.32 10.78 45.95 5.36
1808 1848 4.752879 CACGTCGTGCCGGGGAAT 62.753 66.667 13.22 0.00 0.00 3.01
2000 2060 0.739561 GGTCCTCGTCGCAGTAGAAT 59.260 55.000 0.00 0.00 0.00 2.40
2177 2237 2.669569 CCCCAGACGTGGTTGCTG 60.670 66.667 0.00 0.00 43.23 4.41
2385 2461 1.612442 CCTTGGACCTCCTCCGGAA 60.612 63.158 5.23 0.00 43.03 4.30
2386 2462 2.038975 CCTTGGACCTCCTCCGGA 59.961 66.667 2.93 2.93 43.03 5.14
2507 2595 1.889530 GCTGGTACTCCTCGTGGCTT 61.890 60.000 0.00 0.00 34.23 4.35
2841 2929 7.773690 ACCATGTTATGTATTAGGAGGAACAAC 59.226 37.037 0.00 0.00 0.00 3.32
2869 2965 3.057806 GCCGGCAAAAGTATACAAAGTGT 60.058 43.478 24.80 0.00 0.00 3.55
2900 2996 1.361668 CCACCAGGTTTCGCTCGATG 61.362 60.000 0.00 0.00 0.00 3.84
3011 3109 6.260936 ACGCACGGTGTACTACTAATATTACT 59.739 38.462 10.24 0.00 0.00 2.24
3018 3116 2.921912 GCAACGCACGGTGTACTACTAA 60.922 50.000 10.12 0.00 34.82 2.24
3069 3297 8.429237 TTTGACCTTGGATATAACCATTTGTT 57.571 30.769 2.09 0.00 39.82 2.83
3106 4625 3.181479 TGTCCTAACATGCTCGGATGTAC 60.181 47.826 4.47 0.70 35.43 2.90
3579 6147 2.760581 AGAGTTAATAACGAGGGCCCT 58.239 47.619 29.18 29.18 36.23 5.19
3613 7371 5.104776 GGTTAGGATAGAAGGGTTAACCGTT 60.105 44.000 28.03 28.03 46.96 4.44
3614 7372 4.406972 GGTTAGGATAGAAGGGTTAACCGT 59.593 45.833 18.39 16.26 46.96 4.83
3615 7373 4.406649 TGGTTAGGATAGAAGGGTTAACCG 59.593 45.833 18.39 0.00 46.96 4.44
3616 7374 5.963214 TGGTTAGGATAGAAGGGTTAACC 57.037 43.478 16.85 16.85 40.10 2.85
3617 7375 8.640063 TTTTTGGTTAGGATAGAAGGGTTAAC 57.360 34.615 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.