Multiple sequence alignment - TraesCS7B01G075700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G075700 chr7B 100.000 3915 0 0 1 3915 85152303 85148389 0.000000e+00 7230
1 TraesCS7B01G075700 chr7B 76.084 1338 255 48 1452 2767 85940685 85941979 4.270000e-179 638
2 TraesCS7B01G075700 chr7B 97.849 93 2 0 3823 3915 741000018 741000110 1.130000e-35 161
3 TraesCS7B01G075700 chr7D 90.405 2543 137 46 1318 3805 123739528 123737038 0.000000e+00 3245
4 TraesCS7B01G075700 chr7D 86.555 714 48 12 565 1233 123740286 123739576 0.000000e+00 743
5 TraesCS7B01G075700 chr7D 75.878 1310 247 47 1485 2767 124293410 124294677 4.330000e-169 604
6 TraesCS7B01G075700 chr7D 83.223 453 47 16 3044 3489 123661922 123661492 4.740000e-104 388
7 TraesCS7B01G075700 chr7D 83.223 453 47 16 3044 3489 123668667 123668237 4.740000e-104 388
8 TraesCS7B01G075700 chr7A 94.203 1656 56 13 1287 2941 126593098 126594714 0.000000e+00 2490
9 TraesCS7B01G075700 chr7A 86.907 611 53 10 3148 3733 126669972 126670580 0.000000e+00 660
10 TraesCS7B01G075700 chr7A 76.030 1335 261 43 1452 2767 126860787 126862081 4.270000e-179 638
11 TraesCS7B01G075700 chr7A 85.487 565 34 20 738 1266 126592561 126593113 2.660000e-151 545
12 TraesCS7B01G075700 chr7A 80.993 584 66 20 186 741 126591643 126592209 4.680000e-114 422
13 TraesCS7B01G075700 chr7A 87.831 378 17 14 3333 3682 126589498 126589122 2.180000e-112 416
14 TraesCS7B01G075700 chr7A 90.000 190 11 5 2948 3136 126598384 126598566 5.060000e-59 239
15 TraesCS7B01G075700 chr7A 93.878 98 4 2 3820 3915 624936797 624936700 3.150000e-31 147
16 TraesCS7B01G075700 chr6D 78.930 299 49 11 1574 1868 410040955 410040667 1.440000e-44 191
17 TraesCS7B01G075700 chr3A 95.146 103 3 2 3814 3915 513765453 513765352 1.130000e-35 161
18 TraesCS7B01G075700 chr3A 92.308 104 5 2 3813 3915 717987514 717987615 1.130000e-30 145
19 TraesCS7B01G075700 chr4A 91.964 112 8 1 3805 3915 588548732 588548843 5.240000e-34 156
20 TraesCS7B01G075700 chr4A 92.233 103 5 2 3814 3915 663671994 663671894 4.080000e-30 143
21 TraesCS7B01G075700 chr3B 93.269 104 5 2 3813 3915 15152418 15152520 6.780000e-33 152
22 TraesCS7B01G075700 chr5A 94.845 97 4 1 3818 3914 71383591 71383496 2.440000e-32 150
23 TraesCS7B01G075700 chr6A 94.624 93 5 0 3823 3915 493528145 493528053 1.130000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G075700 chr7B 85148389 85152303 3914 True 7230 7230 100.00000 1 3915 1 chr7B.!!$R1 3914
1 TraesCS7B01G075700 chr7B 85940685 85941979 1294 False 638 638 76.08400 1452 2767 1 chr7B.!!$F1 1315
2 TraesCS7B01G075700 chr7D 123737038 123740286 3248 True 1994 3245 88.48000 565 3805 2 chr7D.!!$R3 3240
3 TraesCS7B01G075700 chr7D 124293410 124294677 1267 False 604 604 75.87800 1485 2767 1 chr7D.!!$F1 1282
4 TraesCS7B01G075700 chr7A 126591643 126598566 6923 False 924 2490 87.67075 186 3136 4 chr7A.!!$F3 2950
5 TraesCS7B01G075700 chr7A 126669972 126670580 608 False 660 660 86.90700 3148 3733 1 chr7A.!!$F1 585
6 TraesCS7B01G075700 chr7A 126860787 126862081 1294 False 638 638 76.03000 1452 2767 1 chr7A.!!$F2 1315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 548 0.807667 CCCAATTGACCTCTCTCGCG 60.808 60.0 7.12 0.00 0.0 5.87 F
1152 1601 0.392863 CGGTGGCCTTGATCATGACA 60.393 55.0 3.32 3.74 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 2851 0.261696 TCCTGATCGTGATCCTCCCA 59.738 55.0 7.36 0.0 37.02 4.37 R
3100 7251 0.253327 GGTAGTTCTGGCTTCTGGGG 59.747 60.0 0.00 0.0 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.121291 TCACACCAAGTCTTGCAACA 57.879 45.000 7.09 0.00 0.00 3.33
20 21 2.441410 TCACACCAAGTCTTGCAACAA 58.559 42.857 7.09 0.00 0.00 2.83
21 22 2.163412 TCACACCAAGTCTTGCAACAAC 59.837 45.455 7.09 0.00 0.00 3.32
22 23 2.164219 CACACCAAGTCTTGCAACAACT 59.836 45.455 7.09 0.00 0.00 3.16
23 24 2.825532 ACACCAAGTCTTGCAACAACTT 59.174 40.909 14.02 14.02 33.63 2.66
24 25 4.013728 ACACCAAGTCTTGCAACAACTTA 58.986 39.130 17.68 0.00 32.20 2.24
25 26 4.142469 ACACCAAGTCTTGCAACAACTTAC 60.142 41.667 17.68 2.02 32.20 2.34
26 27 3.064820 ACCAAGTCTTGCAACAACTTACG 59.935 43.478 17.68 14.09 32.20 3.18
27 28 3.311322 CCAAGTCTTGCAACAACTTACGA 59.689 43.478 17.68 0.26 32.20 3.43
28 29 4.201871 CCAAGTCTTGCAACAACTTACGAA 60.202 41.667 17.68 0.00 32.20 3.85
29 30 4.531659 AGTCTTGCAACAACTTACGAAC 57.468 40.909 0.00 0.00 0.00 3.95
30 31 3.311596 AGTCTTGCAACAACTTACGAACC 59.688 43.478 0.00 0.00 0.00 3.62
31 32 3.311596 GTCTTGCAACAACTTACGAACCT 59.688 43.478 0.00 0.00 0.00 3.50
32 33 3.311322 TCTTGCAACAACTTACGAACCTG 59.689 43.478 0.00 0.00 0.00 4.00
33 34 2.634600 TGCAACAACTTACGAACCTGT 58.365 42.857 0.00 0.00 0.00 4.00
34 35 3.011119 TGCAACAACTTACGAACCTGTT 58.989 40.909 0.00 0.00 0.00 3.16
35 36 4.190001 TGCAACAACTTACGAACCTGTTA 58.810 39.130 0.00 0.00 0.00 2.41
36 37 4.034279 TGCAACAACTTACGAACCTGTTAC 59.966 41.667 0.00 0.00 0.00 2.50
37 38 4.034279 GCAACAACTTACGAACCTGTTACA 59.966 41.667 0.00 0.00 0.00 2.41
38 39 5.277634 GCAACAACTTACGAACCTGTTACAT 60.278 40.000 0.00 0.00 0.00 2.29
39 40 5.917541 ACAACTTACGAACCTGTTACATG 57.082 39.130 0.00 0.00 0.00 3.21
40 41 5.362263 ACAACTTACGAACCTGTTACATGT 58.638 37.500 2.69 2.69 0.00 3.21
41 42 6.514947 ACAACTTACGAACCTGTTACATGTA 58.485 36.000 0.08 0.08 0.00 2.29
42 43 6.643770 ACAACTTACGAACCTGTTACATGTAG 59.356 38.462 5.56 0.00 0.00 2.74
43 44 6.336842 ACTTACGAACCTGTTACATGTAGT 57.663 37.500 5.56 0.00 0.00 2.73
44 45 6.385033 ACTTACGAACCTGTTACATGTAGTC 58.615 40.000 5.56 4.64 0.00 2.59
45 46 4.859304 ACGAACCTGTTACATGTAGTCA 57.141 40.909 5.56 8.78 0.00 3.41
46 47 5.401531 ACGAACCTGTTACATGTAGTCAT 57.598 39.130 5.56 0.00 34.21 3.06
47 48 5.408356 ACGAACCTGTTACATGTAGTCATC 58.592 41.667 5.56 4.51 31.15 2.92
48 49 5.185249 ACGAACCTGTTACATGTAGTCATCT 59.815 40.000 5.56 0.00 31.15 2.90
49 50 6.100004 CGAACCTGTTACATGTAGTCATCTT 58.900 40.000 5.56 4.54 31.15 2.40
50 51 7.094075 ACGAACCTGTTACATGTAGTCATCTTA 60.094 37.037 5.56 0.00 31.15 2.10
51 52 7.758076 CGAACCTGTTACATGTAGTCATCTTAA 59.242 37.037 5.56 0.00 31.15 1.85
52 53 8.773404 AACCTGTTACATGTAGTCATCTTAAC 57.227 34.615 5.56 0.74 33.99 2.01
53 54 7.903145 ACCTGTTACATGTAGTCATCTTAACA 58.097 34.615 5.56 5.39 37.30 2.41
54 55 8.372459 ACCTGTTACATGTAGTCATCTTAACAA 58.628 33.333 5.56 0.00 38.14 2.83
55 56 8.873830 CCTGTTACATGTAGTCATCTTAACAAG 58.126 37.037 5.56 0.00 38.14 3.16
56 57 9.424319 CTGTTACATGTAGTCATCTTAACAAGT 57.576 33.333 5.56 0.00 38.14 3.16
57 58 9.203421 TGTTACATGTAGTCATCTTAACAAGTG 57.797 33.333 5.56 0.00 37.03 3.16
58 59 9.419297 GTTACATGTAGTCATCTTAACAAGTGA 57.581 33.333 5.56 0.00 33.80 3.41
60 61 8.709386 ACATGTAGTCATCTTAACAAGTGATC 57.291 34.615 0.00 0.00 31.15 2.92
61 62 8.314021 ACATGTAGTCATCTTAACAAGTGATCA 58.686 33.333 0.00 0.00 31.15 2.92
62 63 8.598924 CATGTAGTCATCTTAACAAGTGATCAC 58.401 37.037 18.47 18.47 31.15 3.06
63 64 6.806739 TGTAGTCATCTTAACAAGTGATCACG 59.193 38.462 19.85 9.54 36.20 4.35
64 65 5.784177 AGTCATCTTAACAAGTGATCACGT 58.216 37.500 19.85 14.50 36.20 4.49
65 66 6.223852 AGTCATCTTAACAAGTGATCACGTT 58.776 36.000 19.85 19.32 36.20 3.99
66 67 6.706270 AGTCATCTTAACAAGTGATCACGTTT 59.294 34.615 19.85 15.51 36.20 3.60
67 68 7.870954 AGTCATCTTAACAAGTGATCACGTTTA 59.129 33.333 19.85 14.60 36.20 2.01
68 69 8.656849 GTCATCTTAACAAGTGATCACGTTTAT 58.343 33.333 19.85 9.36 36.20 1.40
69 70 9.214957 TCATCTTAACAAGTGATCACGTTTATT 57.785 29.630 19.85 12.61 36.20 1.40
70 71 9.265938 CATCTTAACAAGTGATCACGTTTATTG 57.734 33.333 19.85 18.92 36.20 1.90
71 72 8.373048 TCTTAACAAGTGATCACGTTTATTGT 57.627 30.769 19.85 19.52 36.20 2.71
72 73 8.492748 TCTTAACAAGTGATCACGTTTATTGTC 58.507 33.333 23.02 0.00 36.20 3.18
73 74 6.861065 AACAAGTGATCACGTTTATTGTCT 57.139 33.333 23.02 14.24 36.20 3.41
74 75 6.861065 ACAAGTGATCACGTTTATTGTCTT 57.139 33.333 19.85 2.19 36.20 3.01
75 76 6.658831 ACAAGTGATCACGTTTATTGTCTTG 58.341 36.000 19.85 15.71 36.20 3.02
76 77 5.862924 AGTGATCACGTTTATTGTCTTGG 57.137 39.130 19.85 0.00 36.20 3.61
77 78 5.305585 AGTGATCACGTTTATTGTCTTGGT 58.694 37.500 19.85 0.00 36.20 3.67
78 79 5.763204 AGTGATCACGTTTATTGTCTTGGTT 59.237 36.000 19.85 0.00 36.20 3.67
79 80 5.851177 GTGATCACGTTTATTGTCTTGGTTG 59.149 40.000 10.69 0.00 0.00 3.77
80 81 5.529430 TGATCACGTTTATTGTCTTGGTTGT 59.471 36.000 0.00 0.00 0.00 3.32
81 82 5.821516 TCACGTTTATTGTCTTGGTTGTT 57.178 34.783 0.00 0.00 0.00 2.83
82 83 6.197364 TCACGTTTATTGTCTTGGTTGTTT 57.803 33.333 0.00 0.00 0.00 2.83
83 84 6.622549 TCACGTTTATTGTCTTGGTTGTTTT 58.377 32.000 0.00 0.00 0.00 2.43
84 85 7.759465 TCACGTTTATTGTCTTGGTTGTTTTA 58.241 30.769 0.00 0.00 0.00 1.52
85 86 8.407064 TCACGTTTATTGTCTTGGTTGTTTTAT 58.593 29.630 0.00 0.00 0.00 1.40
86 87 9.026074 CACGTTTATTGTCTTGGTTGTTTTATT 57.974 29.630 0.00 0.00 0.00 1.40
87 88 9.589111 ACGTTTATTGTCTTGGTTGTTTTATTT 57.411 25.926 0.00 0.00 0.00 1.40
93 94 9.927668 ATTGTCTTGGTTGTTTTATTTCTATGG 57.072 29.630 0.00 0.00 0.00 2.74
94 95 8.472007 TGTCTTGGTTGTTTTATTTCTATGGT 57.528 30.769 0.00 0.00 0.00 3.55
95 96 8.919145 TGTCTTGGTTGTTTTATTTCTATGGTT 58.081 29.630 0.00 0.00 0.00 3.67
96 97 9.406828 GTCTTGGTTGTTTTATTTCTATGGTTC 57.593 33.333 0.00 0.00 0.00 3.62
97 98 9.137459 TCTTGGTTGTTTTATTTCTATGGTTCA 57.863 29.630 0.00 0.00 0.00 3.18
98 99 9.757227 CTTGGTTGTTTTATTTCTATGGTTCAA 57.243 29.630 0.00 0.00 0.00 2.69
99 100 9.757227 TTGGTTGTTTTATTTCTATGGTTCAAG 57.243 29.630 0.00 0.00 0.00 3.02
100 101 8.364142 TGGTTGTTTTATTTCTATGGTTCAAGG 58.636 33.333 0.00 0.00 0.00 3.61
101 102 7.817478 GGTTGTTTTATTTCTATGGTTCAAGGG 59.183 37.037 0.00 0.00 0.00 3.95
102 103 7.475137 TGTTTTATTTCTATGGTTCAAGGGG 57.525 36.000 0.00 0.00 0.00 4.79
103 104 6.439058 TGTTTTATTTCTATGGTTCAAGGGGG 59.561 38.462 0.00 0.00 0.00 5.40
104 105 5.806955 TTATTTCTATGGTTCAAGGGGGT 57.193 39.130 0.00 0.00 0.00 4.95
105 106 4.692523 ATTTCTATGGTTCAAGGGGGTT 57.307 40.909 0.00 0.00 0.00 4.11
106 107 4.479156 TTTCTATGGTTCAAGGGGGTTT 57.521 40.909 0.00 0.00 0.00 3.27
107 108 4.479156 TTCTATGGTTCAAGGGGGTTTT 57.521 40.909 0.00 0.00 0.00 2.43
108 109 3.773560 TCTATGGTTCAAGGGGGTTTTG 58.226 45.455 0.00 0.00 0.00 2.44
109 110 2.785357 ATGGTTCAAGGGGGTTTTGA 57.215 45.000 0.00 0.00 33.00 2.69
110 111 2.552093 TGGTTCAAGGGGGTTTTGAA 57.448 45.000 0.00 0.00 41.00 2.69
111 112 3.053359 TGGTTCAAGGGGGTTTTGAAT 57.947 42.857 4.02 0.00 43.90 2.57
112 113 3.388913 TGGTTCAAGGGGGTTTTGAATT 58.611 40.909 4.02 0.00 43.90 2.17
113 114 3.783082 TGGTTCAAGGGGGTTTTGAATTT 59.217 39.130 4.02 0.00 43.90 1.82
114 115 4.228438 TGGTTCAAGGGGGTTTTGAATTTT 59.772 37.500 4.02 0.00 43.90 1.82
115 116 4.578516 GGTTCAAGGGGGTTTTGAATTTTG 59.421 41.667 4.02 0.00 43.90 2.44
116 117 5.432645 GTTCAAGGGGGTTTTGAATTTTGA 58.567 37.500 4.02 0.00 43.90 2.69
117 118 5.029807 TCAAGGGGGTTTTGAATTTTGAC 57.970 39.130 0.00 0.00 31.98 3.18
118 119 4.471386 TCAAGGGGGTTTTGAATTTTGACA 59.529 37.500 0.00 0.00 31.98 3.58
119 120 5.045578 TCAAGGGGGTTTTGAATTTTGACAA 60.046 36.000 0.00 0.00 31.98 3.18
120 121 5.443230 AGGGGGTTTTGAATTTTGACAAA 57.557 34.783 0.00 0.00 34.80 2.83
121 122 5.436175 AGGGGGTTTTGAATTTTGACAAAG 58.564 37.500 0.10 0.00 37.32 2.77
122 123 5.045213 AGGGGGTTTTGAATTTTGACAAAGT 60.045 36.000 0.10 0.00 37.32 2.66
123 124 5.650266 GGGGGTTTTGAATTTTGACAAAGTT 59.350 36.000 8.27 8.27 37.32 2.66
124 125 6.183360 GGGGGTTTTGAATTTTGACAAAGTTC 60.183 38.462 22.51 22.51 37.32 3.01
125 126 6.183360 GGGGTTTTGAATTTTGACAAAGTTCC 60.183 38.462 24.87 14.47 36.59 3.62
126 127 6.372937 GGGTTTTGAATTTTGACAAAGTTCCA 59.627 34.615 24.87 16.12 36.59 3.53
127 128 7.240674 GGTTTTGAATTTTGACAAAGTTCCAC 58.759 34.615 24.87 19.49 36.59 4.02
128 129 7.119116 GGTTTTGAATTTTGACAAAGTTCCACT 59.881 33.333 24.87 0.08 36.59 4.00
129 130 8.503196 GTTTTGAATTTTGACAAAGTTCCACTT 58.497 29.630 24.87 0.00 40.80 3.16
131 132 8.614469 TTGAATTTTGACAAAGTTCCACTTTT 57.386 26.923 24.87 0.00 45.38 2.27
132 133 8.027440 TGAATTTTGACAAAGTTCCACTTTTG 57.973 30.769 24.87 0.00 45.38 2.44
133 134 7.659390 TGAATTTTGACAAAGTTCCACTTTTGT 59.341 29.630 24.87 2.57 45.38 2.83
134 135 9.145865 GAATTTTGACAAAGTTCCACTTTTGTA 57.854 29.630 19.99 0.00 45.38 2.41
135 136 9.665719 AATTTTGACAAAGTTCCACTTTTGTAT 57.334 25.926 3.03 0.00 45.38 2.29
136 137 8.696410 TTTTGACAAAGTTCCACTTTTGTATC 57.304 30.769 0.10 0.00 45.38 2.24
137 138 6.385649 TGACAAAGTTCCACTTTTGTATCC 57.614 37.500 0.00 0.00 45.38 2.59
138 139 6.126409 TGACAAAGTTCCACTTTTGTATCCT 58.874 36.000 0.00 0.00 45.38 3.24
139 140 6.605594 TGACAAAGTTCCACTTTTGTATCCTT 59.394 34.615 0.00 0.00 45.38 3.36
140 141 6.805713 ACAAAGTTCCACTTTTGTATCCTTG 58.194 36.000 0.00 0.00 45.38 3.61
141 142 6.605594 ACAAAGTTCCACTTTTGTATCCTTGA 59.394 34.615 0.00 0.00 45.38 3.02
142 143 6.635030 AAGTTCCACTTTTGTATCCTTGAC 57.365 37.500 0.00 0.00 34.11 3.18
143 144 5.070685 AGTTCCACTTTTGTATCCTTGACC 58.929 41.667 0.00 0.00 0.00 4.02
144 145 3.670625 TCCACTTTTGTATCCTTGACCG 58.329 45.455 0.00 0.00 0.00 4.79
145 146 2.161609 CCACTTTTGTATCCTTGACCGC 59.838 50.000 0.00 0.00 0.00 5.68
146 147 3.074412 CACTTTTGTATCCTTGACCGCT 58.926 45.455 0.00 0.00 0.00 5.52
147 148 3.502211 CACTTTTGTATCCTTGACCGCTT 59.498 43.478 0.00 0.00 0.00 4.68
148 149 4.693566 CACTTTTGTATCCTTGACCGCTTA 59.306 41.667 0.00 0.00 0.00 3.09
149 150 5.180492 CACTTTTGTATCCTTGACCGCTTAA 59.820 40.000 0.00 0.00 0.00 1.85
150 151 5.944007 ACTTTTGTATCCTTGACCGCTTAAT 59.056 36.000 0.00 0.00 0.00 1.40
151 152 6.433093 ACTTTTGTATCCTTGACCGCTTAATT 59.567 34.615 0.00 0.00 0.00 1.40
152 153 6.827586 TTTGTATCCTTGACCGCTTAATTT 57.172 33.333 0.00 0.00 0.00 1.82
153 154 6.827586 TTGTATCCTTGACCGCTTAATTTT 57.172 33.333 0.00 0.00 0.00 1.82
154 155 6.827586 TGTATCCTTGACCGCTTAATTTTT 57.172 33.333 0.00 0.00 0.00 1.94
155 156 6.616947 TGTATCCTTGACCGCTTAATTTTTG 58.383 36.000 0.00 0.00 0.00 2.44
156 157 5.722021 ATCCTTGACCGCTTAATTTTTGT 57.278 34.783 0.00 0.00 0.00 2.83
157 158 5.523438 TCCTTGACCGCTTAATTTTTGTT 57.477 34.783 0.00 0.00 0.00 2.83
158 159 6.636562 TCCTTGACCGCTTAATTTTTGTTA 57.363 33.333 0.00 0.00 0.00 2.41
159 160 7.222000 TCCTTGACCGCTTAATTTTTGTTAT 57.778 32.000 0.00 0.00 0.00 1.89
160 161 7.087639 TCCTTGACCGCTTAATTTTTGTTATG 58.912 34.615 0.00 0.00 0.00 1.90
161 162 6.866248 CCTTGACCGCTTAATTTTTGTTATGT 59.134 34.615 0.00 0.00 0.00 2.29
162 163 7.148820 CCTTGACCGCTTAATTTTTGTTATGTG 60.149 37.037 0.00 0.00 0.00 3.21
163 164 6.740110 TGACCGCTTAATTTTTGTTATGTGT 58.260 32.000 0.00 0.00 0.00 3.72
164 165 7.203910 TGACCGCTTAATTTTTGTTATGTGTT 58.796 30.769 0.00 0.00 0.00 3.32
165 166 7.380065 TGACCGCTTAATTTTTGTTATGTGTTC 59.620 33.333 0.00 0.00 0.00 3.18
166 167 7.203910 ACCGCTTAATTTTTGTTATGTGTTCA 58.796 30.769 0.00 0.00 0.00 3.18
167 168 7.870445 ACCGCTTAATTTTTGTTATGTGTTCAT 59.130 29.630 0.00 0.00 38.00 2.57
168 169 8.707839 CCGCTTAATTTTTGTTATGTGTTCATT 58.292 29.630 0.00 0.00 35.70 2.57
174 175 7.475771 TTTTTGTTATGTGTTCATTTCCAGC 57.524 32.000 0.00 0.00 35.70 4.85
175 176 6.403866 TTTGTTATGTGTTCATTTCCAGCT 57.596 33.333 0.00 0.00 35.70 4.24
176 177 7.517614 TTTGTTATGTGTTCATTTCCAGCTA 57.482 32.000 0.00 0.00 35.70 3.32
177 178 7.701539 TTGTTATGTGTTCATTTCCAGCTAT 57.298 32.000 0.00 0.00 35.70 2.97
178 179 8.800370 TTGTTATGTGTTCATTTCCAGCTATA 57.200 30.769 0.00 0.00 35.70 1.31
179 180 8.208718 TGTTATGTGTTCATTTCCAGCTATAC 57.791 34.615 0.00 0.00 35.70 1.47
180 181 8.046708 TGTTATGTGTTCATTTCCAGCTATACT 58.953 33.333 0.00 0.00 35.70 2.12
181 182 8.893727 GTTATGTGTTCATTTCCAGCTATACTT 58.106 33.333 0.00 0.00 35.70 2.24
182 183 7.944729 ATGTGTTCATTTCCAGCTATACTTT 57.055 32.000 0.00 0.00 0.00 2.66
183 184 7.759489 TGTGTTCATTTCCAGCTATACTTTT 57.241 32.000 0.00 0.00 0.00 2.27
184 185 8.177119 TGTGTTCATTTCCAGCTATACTTTTT 57.823 30.769 0.00 0.00 0.00 1.94
206 207 6.706055 TTTGTACAGTCTTGCTAAATCTCG 57.294 37.500 0.00 0.00 0.00 4.04
208 209 4.461431 TGTACAGTCTTGCTAAATCTCGGA 59.539 41.667 0.00 0.00 0.00 4.55
210 211 2.854777 CAGTCTTGCTAAATCTCGGACG 59.145 50.000 0.00 0.00 0.00 4.79
219 220 4.498345 GCTAAATCTCGGACGATTGAGACT 60.498 45.833 14.03 0.00 43.52 3.24
221 222 4.457834 AATCTCGGACGATTGAGACTTT 57.542 40.909 7.25 0.00 43.52 2.66
225 226 3.724374 TCGGACGATTGAGACTTTGTTT 58.276 40.909 0.00 0.00 0.00 2.83
233 234 7.981142 ACGATTGAGACTTTGTTTTGTCTAAA 58.019 30.769 0.00 0.00 42.79 1.85
236 237 9.107367 GATTGAGACTTTGTTTTGTCTAAATCG 57.893 33.333 13.96 0.00 44.50 3.34
247 248 8.609176 TGTTTTGTCTAAATCGGTGCTATATTC 58.391 33.333 0.00 0.00 0.00 1.75
261 262 5.686397 GTGCTATATTCGTGAGGTCTTACAC 59.314 44.000 0.00 0.00 0.00 2.90
269 274 3.181495 CGTGAGGTCTTACACTGAGATCC 60.181 52.174 0.00 0.00 35.23 3.36
284 289 3.571828 TGAGATCCGTGCAAATTTTTCCA 59.428 39.130 0.00 0.00 0.00 3.53
287 292 5.170748 AGATCCGTGCAAATTTTTCCATTC 58.829 37.500 0.00 0.00 0.00 2.67
288 293 3.312828 TCCGTGCAAATTTTTCCATTCG 58.687 40.909 0.00 0.00 0.00 3.34
289 294 3.004839 TCCGTGCAAATTTTTCCATTCGA 59.995 39.130 0.00 0.00 0.00 3.71
294 299 6.850317 CGTGCAAATTTTTCCATTCGATTTTT 59.150 30.769 0.00 0.00 0.00 1.94
295 300 7.058241 CGTGCAAATTTTTCCATTCGATTTTTC 59.942 33.333 0.00 0.00 0.00 2.29
330 339 7.386025 TCTCTCACATGTTATTTCACTTGACTG 59.614 37.037 0.00 0.00 0.00 3.51
335 344 6.146184 ACATGTTATTTCACTTGACTGAGACG 59.854 38.462 0.00 0.00 0.00 4.18
336 345 5.838529 TGTTATTTCACTTGACTGAGACGA 58.161 37.500 0.00 0.00 0.00 4.20
337 346 5.690409 TGTTATTTCACTTGACTGAGACGAC 59.310 40.000 0.00 0.00 0.00 4.34
338 347 4.592485 ATTTCACTTGACTGAGACGACT 57.408 40.909 0.00 0.00 0.00 4.18
341 353 3.706698 TCACTTGACTGAGACGACTTTG 58.293 45.455 0.00 0.00 0.00 2.77
342 354 3.130516 TCACTTGACTGAGACGACTTTGT 59.869 43.478 0.00 0.00 0.00 2.83
344 356 5.041287 CACTTGACTGAGACGACTTTGTTA 58.959 41.667 0.00 0.00 0.00 2.41
362 374 5.060662 TGTTAAGTCTCAATCGACTGAGG 57.939 43.478 22.53 5.62 43.14 3.86
363 375 2.663826 AAGTCTCAATCGACTGAGGC 57.336 50.000 20.19 20.19 46.44 4.70
475 487 4.834496 AGCAGTCAATTTCTTTCATTCCCA 59.166 37.500 0.00 0.00 0.00 4.37
480 492 6.727697 AGTCAATTTCTTTCATTCCCATTCCT 59.272 34.615 0.00 0.00 0.00 3.36
487 499 8.899887 TTCTTTCATTCCCATTCCTATTTTCT 57.100 30.769 0.00 0.00 0.00 2.52
490 502 7.660030 TTCATTCCCATTCCTATTTTCTTCC 57.340 36.000 0.00 0.00 0.00 3.46
491 503 6.136155 TCATTCCCATTCCTATTTTCTTCCC 58.864 40.000 0.00 0.00 0.00 3.97
494 506 4.168088 TCCCATTCCTATTTTCTTCCCTCC 59.832 45.833 0.00 0.00 0.00 4.30
495 507 4.079212 CCCATTCCTATTTTCTTCCCTCCA 60.079 45.833 0.00 0.00 0.00 3.86
498 510 5.860648 TTCCTATTTTCTTCCCTCCACTT 57.139 39.130 0.00 0.00 0.00 3.16
499 511 5.437191 TCCTATTTTCTTCCCTCCACTTC 57.563 43.478 0.00 0.00 0.00 3.01
536 548 0.807667 CCCAATTGACCTCTCTCGCG 60.808 60.000 7.12 0.00 0.00 5.87
543 556 1.984321 GACCTCTCTCGCGGTCTCAC 61.984 65.000 6.13 0.00 44.90 3.51
620 637 1.217882 GCCGATGCGCTAGTTAATGT 58.782 50.000 9.73 0.00 0.00 2.71
641 658 4.976116 TGTATCGTAGATTGCATCGAACTG 59.024 41.667 0.00 0.00 45.12 3.16
650 673 1.002366 GCATCGAACTGCCAGTACTG 58.998 55.000 16.34 16.34 36.10 2.74
717 743 6.817765 TCTGTCCATTTAACAACTGATTCC 57.182 37.500 0.00 0.00 0.00 3.01
720 746 5.476599 TGTCCATTTAACAACTGATTCCCTG 59.523 40.000 0.00 0.00 0.00 4.45
721 747 5.710099 GTCCATTTAACAACTGATTCCCTGA 59.290 40.000 0.00 0.00 0.00 3.86
724 750 7.288852 TCCATTTAACAACTGATTCCCTGAAAA 59.711 33.333 0.00 0.00 0.00 2.29
725 751 7.384932 CCATTTAACAACTGATTCCCTGAAAAC 59.615 37.037 0.00 0.00 0.00 2.43
742 1123 5.034152 TGAAAACAAGTGAGCAAACGATTC 58.966 37.500 0.00 0.00 0.00 2.52
756 1137 1.271871 ACGATTCAACCAGCCCAATGA 60.272 47.619 0.00 0.00 0.00 2.57
761 1142 1.155859 AACCAGCCCAATGAGCCAA 59.844 52.632 0.00 0.00 0.00 4.52
812 1207 2.752903 CAACTAGGCCAACATGGTTACC 59.247 50.000 5.01 0.00 40.46 2.85
859 1254 1.076632 TGTTTTGGGGCGGTCAACT 60.077 52.632 0.00 0.00 0.00 3.16
860 1255 1.104577 TGTTTTGGGGCGGTCAACTC 61.105 55.000 0.00 0.00 0.00 3.01
861 1256 1.104577 GTTTTGGGGCGGTCAACTCA 61.105 55.000 0.00 0.00 0.00 3.41
888 1292 8.412456 TCATCATCTTTCTCAAGTACAGATCTC 58.588 37.037 0.00 0.00 0.00 2.75
891 1295 8.249638 TCATCTTTCTCAAGTACAGATCTCAAG 58.750 37.037 0.00 0.00 0.00 3.02
911 1320 4.705337 AGAGGAAACTACACACGATCTC 57.295 45.455 0.00 0.00 44.43 2.75
912 1321 4.337145 AGAGGAAACTACACACGATCTCT 58.663 43.478 0.00 0.00 44.43 3.10
1072 1521 2.032528 CGCCTTGCACAGGGAAGA 59.967 61.111 14.32 0.00 44.46 2.87
1073 1522 1.600636 CGCCTTGCACAGGGAAGAA 60.601 57.895 14.32 0.00 44.46 2.52
1074 1523 1.580845 CGCCTTGCACAGGGAAGAAG 61.581 60.000 14.32 0.00 44.46 2.85
1075 1524 1.246737 GCCTTGCACAGGGAAGAAGG 61.247 60.000 14.32 4.35 44.46 3.46
1076 1525 1.246737 CCTTGCACAGGGAAGAAGGC 61.247 60.000 6.96 0.00 44.46 4.35
1077 1526 1.580845 CTTGCACAGGGAAGAAGGCG 61.581 60.000 0.00 0.00 44.46 5.52
1078 1527 2.747855 GCACAGGGAAGAAGGCGG 60.748 66.667 0.00 0.00 0.00 6.13
1079 1528 3.068881 CACAGGGAAGAAGGCGGA 58.931 61.111 0.00 0.00 0.00 5.54
1080 1529 1.376037 CACAGGGAAGAAGGCGGAC 60.376 63.158 0.00 0.00 0.00 4.79
1118 1567 2.108566 CAGGCGATGGAGCTCTGG 59.891 66.667 14.64 0.00 37.29 3.86
1152 1601 0.392863 CGGTGGCCTTGATCATGACA 60.393 55.000 3.32 3.74 0.00 3.58
1184 1633 2.108075 TCCTTTTCATCTTCAGTGGCCA 59.892 45.455 0.00 0.00 0.00 5.36
1215 1664 0.744414 CGGCGGTGTGGATCAAATCT 60.744 55.000 0.00 0.00 0.00 2.40
1258 1707 2.093973 CGAGGAGGTAATTGCAGTCTGT 60.094 50.000 0.93 0.00 0.00 3.41
1259 1708 3.265791 GAGGAGGTAATTGCAGTCTGTG 58.734 50.000 0.93 0.00 0.00 3.66
1261 1710 3.073062 AGGAGGTAATTGCAGTCTGTGTT 59.927 43.478 0.93 0.00 0.00 3.32
1262 1711 3.821033 GGAGGTAATTGCAGTCTGTGTTT 59.179 43.478 0.93 0.00 0.00 2.83
1263 1712 5.001232 GGAGGTAATTGCAGTCTGTGTTTA 58.999 41.667 0.93 0.00 0.00 2.01
1264 1713 5.106673 GGAGGTAATTGCAGTCTGTGTTTAC 60.107 44.000 0.93 6.97 0.00 2.01
1265 1714 5.621193 AGGTAATTGCAGTCTGTGTTTACT 58.379 37.500 0.93 0.00 0.00 2.24
1266 1715 6.062095 AGGTAATTGCAGTCTGTGTTTACTT 58.938 36.000 0.93 1.70 0.00 2.24
1267 1716 6.546034 AGGTAATTGCAGTCTGTGTTTACTTT 59.454 34.615 0.93 0.00 0.00 2.66
1268 1717 7.068226 AGGTAATTGCAGTCTGTGTTTACTTTT 59.932 33.333 0.93 0.00 0.00 2.27
1269 1718 7.704899 GGTAATTGCAGTCTGTGTTTACTTTTT 59.295 33.333 0.93 0.00 0.00 1.94
1369 1819 1.444553 GCTCGTCGTTGCACTAGCT 60.445 57.895 0.00 0.00 42.74 3.32
1370 1820 1.678269 GCTCGTCGTTGCACTAGCTG 61.678 60.000 0.00 0.00 42.74 4.24
1490 1949 3.526534 CTTCTCCTTTCAGGATTCGACC 58.473 50.000 0.00 0.00 44.81 4.79
1498 1957 3.694043 TCAGGATTCGACCAACAATCA 57.306 42.857 0.00 0.00 31.58 2.57
1522 1981 3.760035 AGCCGCTACCAGTCCGTG 61.760 66.667 0.00 0.00 0.00 4.94
1664 2123 0.887933 GCTGAAATCCGGGCAGAAAA 59.112 50.000 15.45 0.00 0.00 2.29
1768 2242 1.040646 CCTTCCTCTACGCCATGCTA 58.959 55.000 0.00 0.00 0.00 3.49
2089 2569 2.817834 GACGGCTACATTGCGCCA 60.818 61.111 4.18 0.00 46.62 5.69
2114 2594 2.162338 CTTCCTCAACCCGGCGTACA 62.162 60.000 6.01 0.00 0.00 2.90
2171 2651 1.931841 CCGTCTTCTACATCGTCTCGA 59.068 52.381 0.00 0.00 41.13 4.04
2382 2863 2.105128 GAGCGTGGGAGGATCACG 59.895 66.667 11.57 11.57 46.19 4.35
2387 2868 3.976339 GTGGGAGGATCACGATCAG 57.024 57.895 9.17 0.00 46.19 2.90
2388 2869 0.390860 GTGGGAGGATCACGATCAGG 59.609 60.000 9.17 0.00 46.19 3.86
2389 2870 0.261696 TGGGAGGATCACGATCAGGA 59.738 55.000 9.17 0.00 46.19 3.86
2390 2871 0.965439 GGGAGGATCACGATCAGGAG 59.035 60.000 9.17 0.00 39.54 3.69
2391 2872 1.479573 GGGAGGATCACGATCAGGAGA 60.480 57.143 9.17 0.00 39.54 3.71
2392 2873 2.311463 GGAGGATCACGATCAGGAGAA 58.689 52.381 9.17 0.00 39.54 2.87
2393 2874 2.295909 GGAGGATCACGATCAGGAGAAG 59.704 54.545 9.17 0.00 39.54 2.85
2394 2875 1.686052 AGGATCACGATCAGGAGAAGC 59.314 52.381 9.17 0.00 39.54 3.86
2395 2876 1.410517 GGATCACGATCAGGAGAAGCA 59.589 52.381 9.17 0.00 39.54 3.91
2396 2877 2.468831 GATCACGATCAGGAGAAGCAC 58.531 52.381 2.09 0.00 37.74 4.40
2397 2878 1.550327 TCACGATCAGGAGAAGCACT 58.450 50.000 0.00 0.00 0.00 4.40
2398 2879 2.723273 TCACGATCAGGAGAAGCACTA 58.277 47.619 0.00 0.00 0.00 2.74
2399 2880 2.423892 TCACGATCAGGAGAAGCACTAC 59.576 50.000 0.00 0.00 0.00 2.73
2400 2881 1.402259 ACGATCAGGAGAAGCACTACG 59.598 52.381 0.00 0.00 33.99 3.51
2401 2882 1.846541 GATCAGGAGAAGCACTACGC 58.153 55.000 0.00 0.00 42.91 4.42
2402 2883 0.461961 ATCAGGAGAAGCACTACGCC 59.538 55.000 0.00 0.00 44.04 5.68
2403 2884 1.153549 CAGGAGAAGCACTACGCCC 60.154 63.158 0.00 0.00 44.04 6.13
2404 2885 2.202756 GGAGAAGCACTACGCCCG 60.203 66.667 0.00 0.00 44.04 6.13
2599 3080 3.869272 GACATGAAGGCGCTGGCG 61.869 66.667 7.64 10.80 41.24 5.69
2926 3413 6.477033 AGAAGGATGTGTAGAATTTTCGATCG 59.523 38.462 9.36 9.36 0.00 3.69
2941 3428 1.580704 CGATCGCAGTTTACACCGTAC 59.419 52.381 0.26 0.00 0.00 3.67
2942 3429 1.580704 GATCGCAGTTTACACCGTACG 59.419 52.381 8.69 8.69 0.00 3.67
2944 3431 1.533299 TCGCAGTTTACACCGTACGTA 59.467 47.619 15.21 0.00 0.00 3.57
2946 3433 3.372514 TCGCAGTTTACACCGTACGTATA 59.627 43.478 15.21 0.31 0.00 1.47
2998 7149 0.907230 GTGTGGAGAGGGAAGAGCCT 60.907 60.000 0.00 0.00 36.66 4.58
3022 7173 8.385111 CCTCAAATAAACAATGCAAATCATGAC 58.615 33.333 0.00 0.00 35.13 3.06
3086 7237 9.555727 ACACTTTATGTAAGTTTCACATACAGT 57.444 29.630 10.05 10.05 44.73 3.55
3136 7287 6.261381 AGAACTACCTGAGTGATTCGTCTATC 59.739 42.308 0.00 0.00 38.87 2.08
3239 7390 0.698818 ATGGTCAGTCCCAAGGGTTC 59.301 55.000 4.80 0.28 38.20 3.62
3243 7394 2.424379 GGTCAGTCCCAAGGGTTCTTTT 60.424 50.000 4.80 0.00 36.47 2.27
3248 7400 3.117131 AGTCCCAAGGGTTCTTTTGTCAT 60.117 43.478 4.80 0.00 36.47 3.06
3278 7430 4.600032 GTTAACCGTTCGGTTGTCAAAAT 58.400 39.130 31.26 11.81 46.68 1.82
3282 7434 3.128938 ACCGTTCGGTTGTCAAAATTTCA 59.871 39.130 11.27 0.00 34.35 2.69
3288 7440 3.061271 CGGTTGTCAAAATTTCAGTTGCG 60.061 43.478 0.00 0.00 0.00 4.85
3293 7445 0.319469 AAAATTTCAGTTGCGCCCCG 60.319 50.000 4.18 0.00 0.00 5.73
3302 7455 0.244178 GTTGCGCCCCGGAAATTTTA 59.756 50.000 0.73 0.00 39.10 1.52
3317 7470 7.546316 CCGGAAATTTTATTACCGTTCCAAAAT 59.454 33.333 12.60 0.00 41.67 1.82
3363 7516 3.835378 CATTGCAATGTAGCACAGTCA 57.165 42.857 27.81 0.00 45.61 3.41
3391 7544 1.524008 GCTGAAAAAGGTGTCGGGGG 61.524 60.000 0.00 0.00 0.00 5.40
3392 7545 1.524008 CTGAAAAAGGTGTCGGGGGC 61.524 60.000 0.00 0.00 0.00 5.80
3430 7583 0.119155 ACCAGGGACCTTGAGATGGA 59.881 55.000 4.91 0.00 0.00 3.41
3489 7642 8.588290 ATGGCAACTTTGTGTATATTAAAGGA 57.412 30.769 0.00 0.00 36.11 3.36
3490 7643 8.050778 TGGCAACTTTGTGTATATTAAAGGAG 57.949 34.615 0.00 0.00 36.11 3.69
3565 7745 2.459060 TTCAAGATTCGCGGTTACCA 57.541 45.000 6.13 0.00 0.00 3.25
3570 7750 3.598019 AGATTCGCGGTTACCAGTTTA 57.402 42.857 6.13 0.00 0.00 2.01
3583 7763 1.883926 CCAGTTTAACCGACCCCAAAG 59.116 52.381 0.00 0.00 0.00 2.77
3684 7865 7.576403 TGTTAATTCCTTGTTAGGGGTATACC 58.424 38.462 13.99 13.99 42.26 2.73
3689 7870 5.352264 TCCTTGTTAGGGGTATACCAGAAA 58.648 41.667 23.33 10.56 42.26 2.52
3694 7875 9.503399 CTTGTTAGGGGTATACCAGAAAATATC 57.497 37.037 23.33 2.53 42.91 1.63
3721 7902 3.561120 TTGCCACACCCGTCCATCC 62.561 63.158 0.00 0.00 0.00 3.51
3805 7992 6.810911 AGATCGTATTATTGTGAGACAGCTT 58.189 36.000 0.00 0.00 0.00 3.74
3806 7993 7.268586 AGATCGTATTATTGTGAGACAGCTTT 58.731 34.615 0.00 0.00 0.00 3.51
3807 7994 7.766278 AGATCGTATTATTGTGAGACAGCTTTT 59.234 33.333 0.00 0.00 0.00 2.27
3808 7995 7.667043 TCGTATTATTGTGAGACAGCTTTTT 57.333 32.000 0.00 0.00 0.00 1.94
3858 8045 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
3860 8047 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
3861 8048 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
3862 8049 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
3863 8050 1.147824 CCGGCCTCTGCATCAGAAT 59.852 57.895 0.00 0.00 40.18 2.40
3864 8051 1.164662 CCGGCCTCTGCATCAGAATG 61.165 60.000 0.00 0.00 40.18 2.67
3880 8067 5.687780 TCAGAATGATGCATACAACCATCT 58.312 37.500 0.00 1.28 42.56 2.90
3881 8068 6.124340 TCAGAATGATGCATACAACCATCTT 58.876 36.000 0.00 0.00 42.56 2.40
3882 8069 7.281841 TCAGAATGATGCATACAACCATCTTA 58.718 34.615 0.00 0.00 42.56 2.10
3883 8070 7.940688 TCAGAATGATGCATACAACCATCTTAT 59.059 33.333 0.00 0.00 42.56 1.73
3884 8071 8.573885 CAGAATGATGCATACAACCATCTTATT 58.426 33.333 0.00 0.00 39.69 1.40
3885 8072 9.797642 AGAATGATGCATACAACCATCTTATTA 57.202 29.630 0.00 0.00 38.84 0.98
3888 8075 8.165239 TGATGCATACAACCATCTTATTAACC 57.835 34.615 0.00 0.00 38.84 2.85
3889 8076 7.777440 TGATGCATACAACCATCTTATTAACCA 59.223 33.333 0.00 0.00 38.84 3.67
3890 8077 7.946381 TGCATACAACCATCTTATTAACCAA 57.054 32.000 0.00 0.00 0.00 3.67
3891 8078 8.354711 TGCATACAACCATCTTATTAACCAAA 57.645 30.769 0.00 0.00 0.00 3.28
3892 8079 8.976353 TGCATACAACCATCTTATTAACCAAAT 58.024 29.630 0.00 0.00 0.00 2.32
3906 8093 9.832445 TTATTAACCAAATAACAAAAAGTGCCA 57.168 25.926 0.00 0.00 35.55 4.92
3907 8094 8.738645 ATTAACCAAATAACAAAAAGTGCCAA 57.261 26.923 0.00 0.00 0.00 4.52
3908 8095 6.429791 AACCAAATAACAAAAAGTGCCAAC 57.570 33.333 0.00 0.00 0.00 3.77
3909 8096 5.491982 ACCAAATAACAAAAAGTGCCAACA 58.508 33.333 0.00 0.00 0.00 3.33
3910 8097 5.940470 ACCAAATAACAAAAAGTGCCAACAA 59.060 32.000 0.00 0.00 0.00 2.83
3911 8098 6.093357 ACCAAATAACAAAAAGTGCCAACAAG 59.907 34.615 0.00 0.00 0.00 3.16
3912 8099 6.458070 CCAAATAACAAAAAGTGCCAACAAGG 60.458 38.462 0.00 0.00 41.84 3.61
3913 8100 3.694043 AACAAAAAGTGCCAACAAGGT 57.306 38.095 0.00 0.00 40.61 3.50
3914 8101 3.694043 ACAAAAAGTGCCAACAAGGTT 57.306 38.095 0.00 0.00 40.61 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.121291 TGTTGCAAGACTTGGTGTGA 57.879 45.000 16.80 0.00 0.00 3.58
1 2 2.164219 AGTTGTTGCAAGACTTGGTGTG 59.836 45.455 16.80 0.00 0.00 3.82
2 3 2.446435 AGTTGTTGCAAGACTTGGTGT 58.554 42.857 16.80 0.00 0.00 4.16
3 4 3.508744 AAGTTGTTGCAAGACTTGGTG 57.491 42.857 21.19 0.00 32.73 4.17
5 6 3.311322 TCGTAAGTTGTTGCAAGACTTGG 59.689 43.478 26.58 20.52 35.43 3.61
6 7 4.530094 TCGTAAGTTGTTGCAAGACTTG 57.470 40.909 26.58 11.02 35.43 3.16
7 8 4.201881 GGTTCGTAAGTTGTTGCAAGACTT 60.202 41.667 23.75 23.75 37.40 3.01
8 9 3.311596 GGTTCGTAAGTTGTTGCAAGACT 59.688 43.478 0.00 4.29 39.48 3.24
9 10 3.311596 AGGTTCGTAAGTTGTTGCAAGAC 59.688 43.478 0.00 1.56 39.48 3.01
10 11 3.311322 CAGGTTCGTAAGTTGTTGCAAGA 59.689 43.478 0.00 0.00 39.48 3.02
11 12 3.064820 ACAGGTTCGTAAGTTGTTGCAAG 59.935 43.478 0.00 0.00 39.48 4.01
12 13 3.011119 ACAGGTTCGTAAGTTGTTGCAA 58.989 40.909 0.00 0.00 39.48 4.08
13 14 2.634600 ACAGGTTCGTAAGTTGTTGCA 58.365 42.857 0.00 0.00 39.48 4.08
14 15 3.685836 AACAGGTTCGTAAGTTGTTGC 57.314 42.857 0.00 0.00 39.48 4.17
15 16 5.721876 TGTAACAGGTTCGTAAGTTGTTG 57.278 39.130 0.00 0.00 34.22 3.33
16 17 5.818857 ACATGTAACAGGTTCGTAAGTTGTT 59.181 36.000 0.00 0.00 36.15 2.83
17 18 5.362263 ACATGTAACAGGTTCGTAAGTTGT 58.638 37.500 0.00 0.00 39.48 3.32
18 19 5.917541 ACATGTAACAGGTTCGTAAGTTG 57.082 39.130 0.00 0.00 39.48 3.16
19 20 6.752168 ACTACATGTAACAGGTTCGTAAGTT 58.248 36.000 7.06 0.00 31.53 2.66
20 21 6.016024 TGACTACATGTAACAGGTTCGTAAGT 60.016 38.462 7.06 0.00 31.53 2.24
21 22 6.384224 TGACTACATGTAACAGGTTCGTAAG 58.616 40.000 7.06 0.00 29.18 2.34
22 23 6.330004 TGACTACATGTAACAGGTTCGTAA 57.670 37.500 7.06 0.00 29.18 3.18
23 24 5.963176 TGACTACATGTAACAGGTTCGTA 57.037 39.130 7.06 0.00 29.18 3.43
24 25 4.859304 TGACTACATGTAACAGGTTCGT 57.141 40.909 7.06 0.00 29.18 3.85
25 26 5.651530 AGATGACTACATGTAACAGGTTCG 58.348 41.667 7.06 0.00 36.82 3.95
26 27 8.870879 GTTAAGATGACTACATGTAACAGGTTC 58.129 37.037 7.06 5.62 35.68 3.62
27 28 8.372459 TGTTAAGATGACTACATGTAACAGGTT 58.628 33.333 7.06 9.65 37.94 3.50
28 29 7.903145 TGTTAAGATGACTACATGTAACAGGT 58.097 34.615 7.06 0.93 37.94 4.00
29 30 8.771920 TTGTTAAGATGACTACATGTAACAGG 57.228 34.615 7.06 0.00 40.54 4.00
30 31 9.424319 ACTTGTTAAGATGACTACATGTAACAG 57.576 33.333 7.06 0.00 40.54 3.16
31 32 9.203421 CACTTGTTAAGATGACTACATGTAACA 57.797 33.333 7.06 10.41 39.33 2.41
32 33 9.419297 TCACTTGTTAAGATGACTACATGTAAC 57.581 33.333 7.06 5.05 36.82 2.50
34 35 9.803315 GATCACTTGTTAAGATGACTACATGTA 57.197 33.333 5.25 5.25 36.82 2.29
35 36 8.314021 TGATCACTTGTTAAGATGACTACATGT 58.686 33.333 2.69 2.69 36.82 3.21
36 37 8.598924 GTGATCACTTGTTAAGATGACTACATG 58.401 37.037 18.83 0.00 36.82 3.21
37 38 7.489435 CGTGATCACTTGTTAAGATGACTACAT 59.511 37.037 22.95 0.00 39.67 2.29
38 39 6.806739 CGTGATCACTTGTTAAGATGACTACA 59.193 38.462 22.95 0.00 0.00 2.74
39 40 6.807230 ACGTGATCACTTGTTAAGATGACTAC 59.193 38.462 22.95 0.00 0.00 2.73
40 41 6.920817 ACGTGATCACTTGTTAAGATGACTA 58.079 36.000 22.95 0.00 0.00 2.59
41 42 5.784177 ACGTGATCACTTGTTAAGATGACT 58.216 37.500 22.95 0.00 0.00 3.41
42 43 6.467723 AACGTGATCACTTGTTAAGATGAC 57.532 37.500 22.95 0.00 0.00 3.06
43 44 8.771920 ATAAACGTGATCACTTGTTAAGATGA 57.228 30.769 22.95 4.66 0.00 2.92
44 45 9.265938 CAATAAACGTGATCACTTGTTAAGATG 57.734 33.333 22.95 12.99 0.00 2.90
45 46 8.999431 ACAATAAACGTGATCACTTGTTAAGAT 58.001 29.630 22.95 11.65 0.00 2.40
46 47 8.373048 ACAATAAACGTGATCACTTGTTAAGA 57.627 30.769 22.95 10.15 0.00 2.10
47 48 8.495949 AGACAATAAACGTGATCACTTGTTAAG 58.504 33.333 23.42 16.33 28.92 1.85
48 49 8.373048 AGACAATAAACGTGATCACTTGTTAA 57.627 30.769 23.42 7.96 28.92 2.01
49 50 7.956420 AGACAATAAACGTGATCACTTGTTA 57.044 32.000 23.42 17.92 28.92 2.41
50 51 6.861065 AGACAATAAACGTGATCACTTGTT 57.139 33.333 23.42 18.13 28.92 2.83
51 52 6.293407 CCAAGACAATAAACGTGATCACTTGT 60.293 38.462 23.01 23.01 30.62 3.16
52 53 6.079763 CCAAGACAATAAACGTGATCACTTG 58.920 40.000 22.95 20.27 0.00 3.16
53 54 5.763204 ACCAAGACAATAAACGTGATCACTT 59.237 36.000 22.95 11.83 0.00 3.16
54 55 5.305585 ACCAAGACAATAAACGTGATCACT 58.694 37.500 22.95 7.76 0.00 3.41
55 56 5.607119 ACCAAGACAATAAACGTGATCAC 57.393 39.130 16.21 16.21 0.00 3.06
56 57 5.529430 ACAACCAAGACAATAAACGTGATCA 59.471 36.000 0.00 0.00 0.00 2.92
57 58 5.997385 ACAACCAAGACAATAAACGTGATC 58.003 37.500 0.00 0.00 0.00 2.92
58 59 6.385649 AACAACCAAGACAATAAACGTGAT 57.614 33.333 0.00 0.00 0.00 3.06
59 60 5.821516 AACAACCAAGACAATAAACGTGA 57.178 34.783 0.00 0.00 0.00 4.35
60 61 6.879188 AAAACAACCAAGACAATAAACGTG 57.121 33.333 0.00 0.00 0.00 4.49
61 62 9.589111 AAATAAAACAACCAAGACAATAAACGT 57.411 25.926 0.00 0.00 0.00 3.99
67 68 9.927668 CCATAGAAATAAAACAACCAAGACAAT 57.072 29.630 0.00 0.00 0.00 2.71
68 69 8.919145 ACCATAGAAATAAAACAACCAAGACAA 58.081 29.630 0.00 0.00 0.00 3.18
69 70 8.472007 ACCATAGAAATAAAACAACCAAGACA 57.528 30.769 0.00 0.00 0.00 3.41
70 71 9.406828 GAACCATAGAAATAAAACAACCAAGAC 57.593 33.333 0.00 0.00 0.00 3.01
71 72 9.137459 TGAACCATAGAAATAAAACAACCAAGA 57.863 29.630 0.00 0.00 0.00 3.02
72 73 9.757227 TTGAACCATAGAAATAAAACAACCAAG 57.243 29.630 0.00 0.00 0.00 3.61
73 74 9.757227 CTTGAACCATAGAAATAAAACAACCAA 57.243 29.630 0.00 0.00 0.00 3.67
74 75 8.364142 CCTTGAACCATAGAAATAAAACAACCA 58.636 33.333 0.00 0.00 0.00 3.67
75 76 7.817478 CCCTTGAACCATAGAAATAAAACAACC 59.183 37.037 0.00 0.00 0.00 3.77
76 77 7.817478 CCCCTTGAACCATAGAAATAAAACAAC 59.183 37.037 0.00 0.00 0.00 3.32
77 78 7.038658 CCCCCTTGAACCATAGAAATAAAACAA 60.039 37.037 0.00 0.00 0.00 2.83
78 79 6.439058 CCCCCTTGAACCATAGAAATAAAACA 59.561 38.462 0.00 0.00 0.00 2.83
79 80 6.439375 ACCCCCTTGAACCATAGAAATAAAAC 59.561 38.462 0.00 0.00 0.00 2.43
80 81 6.566914 ACCCCCTTGAACCATAGAAATAAAA 58.433 36.000 0.00 0.00 0.00 1.52
81 82 6.160483 ACCCCCTTGAACCATAGAAATAAA 57.840 37.500 0.00 0.00 0.00 1.40
82 83 5.806955 ACCCCCTTGAACCATAGAAATAA 57.193 39.130 0.00 0.00 0.00 1.40
83 84 5.806955 AACCCCCTTGAACCATAGAAATA 57.193 39.130 0.00 0.00 0.00 1.40
84 85 4.692523 AACCCCCTTGAACCATAGAAAT 57.307 40.909 0.00 0.00 0.00 2.17
85 86 4.479156 AAACCCCCTTGAACCATAGAAA 57.521 40.909 0.00 0.00 0.00 2.52
86 87 4.140900 TCAAAACCCCCTTGAACCATAGAA 60.141 41.667 0.00 0.00 29.93 2.10
87 88 3.399644 TCAAAACCCCCTTGAACCATAGA 59.600 43.478 0.00 0.00 29.93 1.98
88 89 3.773560 TCAAAACCCCCTTGAACCATAG 58.226 45.455 0.00 0.00 29.93 2.23
89 90 3.905493 TCAAAACCCCCTTGAACCATA 57.095 42.857 0.00 0.00 29.93 2.74
90 91 2.785357 TCAAAACCCCCTTGAACCAT 57.215 45.000 0.00 0.00 29.93 3.55
91 92 2.552093 TTCAAAACCCCCTTGAACCA 57.448 45.000 0.00 0.00 37.76 3.67
92 93 4.431416 AAATTCAAAACCCCCTTGAACC 57.569 40.909 0.40 0.00 43.57 3.62
93 94 5.295787 GTCAAAATTCAAAACCCCCTTGAAC 59.704 40.000 0.40 0.00 43.57 3.18
94 95 5.045578 TGTCAAAATTCAAAACCCCCTTGAA 60.046 36.000 0.87 0.87 44.55 2.69
95 96 4.471386 TGTCAAAATTCAAAACCCCCTTGA 59.529 37.500 0.00 0.00 0.00 3.02
96 97 4.775236 TGTCAAAATTCAAAACCCCCTTG 58.225 39.130 0.00 0.00 0.00 3.61
97 98 5.443230 TTGTCAAAATTCAAAACCCCCTT 57.557 34.783 0.00 0.00 0.00 3.95
98 99 5.045213 ACTTTGTCAAAATTCAAAACCCCCT 60.045 36.000 0.00 0.00 33.99 4.79
99 100 5.189928 ACTTTGTCAAAATTCAAAACCCCC 58.810 37.500 0.00 0.00 33.99 5.40
100 101 6.183360 GGAACTTTGTCAAAATTCAAAACCCC 60.183 38.462 18.33 0.00 33.99 4.95
101 102 6.372937 TGGAACTTTGTCAAAATTCAAAACCC 59.627 34.615 18.33 4.34 33.99 4.11
102 103 7.240674 GTGGAACTTTGTCAAAATTCAAAACC 58.759 34.615 18.33 4.95 33.99 3.27
121 122 4.083484 CGGTCAAGGATACAAAAGTGGAAC 60.083 45.833 0.00 0.00 41.41 3.62
122 123 4.069304 CGGTCAAGGATACAAAAGTGGAA 58.931 43.478 0.00 0.00 41.41 3.53
123 124 3.670625 CGGTCAAGGATACAAAAGTGGA 58.329 45.455 0.00 0.00 41.41 4.02
124 125 2.161609 GCGGTCAAGGATACAAAAGTGG 59.838 50.000 0.00 0.00 41.41 4.00
125 126 3.074412 AGCGGTCAAGGATACAAAAGTG 58.926 45.455 0.00 0.00 41.41 3.16
126 127 3.418684 AGCGGTCAAGGATACAAAAGT 57.581 42.857 0.00 0.00 41.41 2.66
127 128 5.873179 TTAAGCGGTCAAGGATACAAAAG 57.127 39.130 0.00 0.00 41.41 2.27
128 129 6.827586 AATTAAGCGGTCAAGGATACAAAA 57.172 33.333 0.00 0.00 41.41 2.44
129 130 6.827586 AAATTAAGCGGTCAAGGATACAAA 57.172 33.333 0.00 0.00 41.41 2.83
130 131 6.827586 AAAATTAAGCGGTCAAGGATACAA 57.172 33.333 0.00 0.00 41.41 2.41
131 132 6.207810 ACAAAAATTAAGCGGTCAAGGATACA 59.792 34.615 0.00 0.00 41.41 2.29
132 133 6.617879 ACAAAAATTAAGCGGTCAAGGATAC 58.382 36.000 0.00 0.00 0.00 2.24
133 134 6.827586 ACAAAAATTAAGCGGTCAAGGATA 57.172 33.333 0.00 0.00 0.00 2.59
134 135 5.722021 ACAAAAATTAAGCGGTCAAGGAT 57.278 34.783 0.00 0.00 0.00 3.24
135 136 5.523438 AACAAAAATTAAGCGGTCAAGGA 57.477 34.783 0.00 0.00 0.00 3.36
136 137 6.866248 ACATAACAAAAATTAAGCGGTCAAGG 59.134 34.615 0.00 0.00 0.00 3.61
137 138 7.381139 ACACATAACAAAAATTAAGCGGTCAAG 59.619 33.333 0.00 0.00 0.00 3.02
138 139 7.203910 ACACATAACAAAAATTAAGCGGTCAA 58.796 30.769 0.00 0.00 0.00 3.18
139 140 6.740110 ACACATAACAAAAATTAAGCGGTCA 58.260 32.000 0.00 0.00 0.00 4.02
140 141 7.380065 TGAACACATAACAAAAATTAAGCGGTC 59.620 33.333 0.00 0.00 0.00 4.79
141 142 7.203910 TGAACACATAACAAAAATTAAGCGGT 58.796 30.769 0.00 0.00 0.00 5.68
142 143 7.630470 TGAACACATAACAAAAATTAAGCGG 57.370 32.000 0.00 0.00 0.00 5.52
148 149 8.558700 GCTGGAAATGAACACATAACAAAAATT 58.441 29.630 0.00 0.00 0.00 1.82
149 150 7.933033 AGCTGGAAATGAACACATAACAAAAAT 59.067 29.630 0.00 0.00 0.00 1.82
150 151 7.271511 AGCTGGAAATGAACACATAACAAAAA 58.728 30.769 0.00 0.00 0.00 1.94
151 152 6.815089 AGCTGGAAATGAACACATAACAAAA 58.185 32.000 0.00 0.00 0.00 2.44
152 153 6.403866 AGCTGGAAATGAACACATAACAAA 57.596 33.333 0.00 0.00 0.00 2.83
153 154 7.701539 ATAGCTGGAAATGAACACATAACAA 57.298 32.000 0.00 0.00 0.00 2.83
154 155 8.046708 AGTATAGCTGGAAATGAACACATAACA 58.953 33.333 0.00 0.00 0.00 2.41
155 156 8.438676 AGTATAGCTGGAAATGAACACATAAC 57.561 34.615 0.00 0.00 0.00 1.89
156 157 9.461312 AAAGTATAGCTGGAAATGAACACATAA 57.539 29.630 0.00 0.00 0.00 1.90
157 158 9.461312 AAAAGTATAGCTGGAAATGAACACATA 57.539 29.630 0.00 0.00 0.00 2.29
158 159 7.944729 AAAGTATAGCTGGAAATGAACACAT 57.055 32.000 0.00 0.00 0.00 3.21
159 160 7.759489 AAAAGTATAGCTGGAAATGAACACA 57.241 32.000 0.00 0.00 0.00 3.72
181 182 7.307751 CCGAGATTTAGCAAGACTGTACAAAAA 60.308 37.037 0.00 0.00 0.00 1.94
182 183 6.147164 CCGAGATTTAGCAAGACTGTACAAAA 59.853 38.462 0.00 0.00 0.00 2.44
183 184 5.637810 CCGAGATTTAGCAAGACTGTACAAA 59.362 40.000 0.00 0.00 0.00 2.83
184 185 5.047590 TCCGAGATTTAGCAAGACTGTACAA 60.048 40.000 0.00 0.00 0.00 2.41
187 188 4.438336 CGTCCGAGATTTAGCAAGACTGTA 60.438 45.833 0.00 0.00 0.00 2.74
200 201 4.177026 CAAAGTCTCAATCGTCCGAGATT 58.823 43.478 0.00 0.00 40.27 2.40
203 204 2.947852 ACAAAGTCTCAATCGTCCGAG 58.052 47.619 0.00 0.00 0.00 4.63
206 207 5.007724 AGACAAAACAAAGTCTCAATCGTCC 59.992 40.000 0.00 0.00 40.96 4.79
208 209 7.548196 TTAGACAAAACAAAGTCTCAATCGT 57.452 32.000 0.00 0.00 43.59 3.73
210 211 9.107367 CGATTTAGACAAAACAAAGTCTCAATC 57.893 33.333 14.71 14.71 44.34 2.67
219 220 5.508200 AGCACCGATTTAGACAAAACAAA 57.492 34.783 0.00 0.00 0.00 2.83
221 222 8.500753 AATATAGCACCGATTTAGACAAAACA 57.499 30.769 0.00 0.00 0.00 2.83
225 226 6.419710 CACGAATATAGCACCGATTTAGACAA 59.580 38.462 0.00 0.00 0.00 3.18
233 234 2.891580 ACCTCACGAATATAGCACCGAT 59.108 45.455 0.00 0.00 0.00 4.18
236 237 4.323553 AAGACCTCACGAATATAGCACC 57.676 45.455 0.00 0.00 0.00 5.01
247 248 3.181495 GGATCTCAGTGTAAGACCTCACG 60.181 52.174 0.00 0.00 39.25 4.35
261 262 4.168760 GGAAAAATTTGCACGGATCTCAG 58.831 43.478 0.00 0.00 0.00 3.35
269 274 5.514059 AATCGAATGGAAAAATTTGCACG 57.486 34.783 2.07 3.61 41.30 5.34
305 314 7.386025 TCAGTCAAGTGAAATAACATGTGAGAG 59.614 37.037 0.00 0.00 0.00 3.20
307 316 7.386025 TCTCAGTCAAGTGAAATAACATGTGAG 59.614 37.037 0.00 0.00 29.79 3.51
319 328 4.112634 CAAAGTCGTCTCAGTCAAGTGAA 58.887 43.478 0.00 0.00 0.00 3.18
349 361 0.747255 GCTAGGCCTCAGTCGATTGA 59.253 55.000 9.68 10.44 0.00 2.57
350 362 0.249657 GGCTAGGCCTCAGTCGATTG 60.250 60.000 9.68 0.68 46.69 2.67
352 364 3.863606 GGCTAGGCCTCAGTCGAT 58.136 61.111 9.68 0.00 46.69 3.59
448 460 7.067981 GGGAATGAAAGAAATTGACTGCTATCT 59.932 37.037 0.00 0.00 0.00 1.98
451 463 6.009589 TGGGAATGAAAGAAATTGACTGCTA 58.990 36.000 0.00 0.00 0.00 3.49
453 465 5.138125 TGGGAATGAAAGAAATTGACTGC 57.862 39.130 0.00 0.00 0.00 4.40
455 467 6.727697 AGGAATGGGAATGAAAGAAATTGACT 59.272 34.615 0.00 0.00 0.00 3.41
456 468 6.939622 AGGAATGGGAATGAAAGAAATTGAC 58.060 36.000 0.00 0.00 0.00 3.18
475 487 6.408770 AAGTGGAGGGAAGAAAATAGGAAT 57.591 37.500 0.00 0.00 0.00 3.01
480 492 5.516591 CCAAGGAAGTGGAGGGAAGAAAATA 60.517 44.000 0.00 0.00 41.65 1.40
487 499 0.772124 AGCCAAGGAAGTGGAGGGAA 60.772 55.000 0.00 0.00 41.65 3.97
490 502 3.372440 AATAAGCCAAGGAAGTGGAGG 57.628 47.619 0.00 0.00 41.65 4.30
491 503 3.445096 CCAAATAAGCCAAGGAAGTGGAG 59.555 47.826 0.00 0.00 41.65 3.86
494 506 3.119849 CGACCAAATAAGCCAAGGAAGTG 60.120 47.826 0.00 0.00 0.00 3.16
495 507 3.081804 CGACCAAATAAGCCAAGGAAGT 58.918 45.455 0.00 0.00 0.00 3.01
498 510 1.459450 GCGACCAAATAAGCCAAGGA 58.541 50.000 0.00 0.00 0.00 3.36
536 548 1.541588 GTTGATGGCTTTGGTGAGACC 59.458 52.381 0.00 0.00 39.22 3.85
613 630 7.562640 TCGATGCAATCTACGATACATTAAC 57.437 36.000 0.00 0.00 42.58 2.01
620 637 3.981416 GCAGTTCGATGCAATCTACGATA 59.019 43.478 6.13 0.00 45.77 2.92
641 658 0.736325 ACGTTCGATGCAGTACTGGC 60.736 55.000 23.95 16.04 0.00 4.85
650 673 2.126228 TCCACCGACGTTCGATGC 60.126 61.111 8.63 0.00 43.74 3.91
680 706 1.493950 GACAGATCCATGGAAGCGCG 61.494 60.000 20.67 12.61 0.00 6.86
691 717 7.396540 AATCAGTTGTTAAATGGACAGATCC 57.603 36.000 0.00 0.00 46.48 3.36
717 743 3.108144 CGTTTGCTCACTTGTTTTCAGG 58.892 45.455 0.00 0.00 0.00 3.86
720 746 5.034152 TGAATCGTTTGCTCACTTGTTTTC 58.966 37.500 0.00 0.00 0.00 2.29
721 747 4.992688 TGAATCGTTTGCTCACTTGTTTT 58.007 34.783 0.00 0.00 0.00 2.43
724 750 3.243068 GGTTGAATCGTTTGCTCACTTGT 60.243 43.478 0.00 0.00 0.00 3.16
725 751 3.243035 TGGTTGAATCGTTTGCTCACTTG 60.243 43.478 0.00 0.00 0.00 3.16
742 1123 1.186917 TTGGCTCATTGGGCTGGTTG 61.187 55.000 8.71 0.00 0.00 3.77
756 1137 1.471676 GCTAGATGCGTGTAGTTGGCT 60.472 52.381 11.42 0.00 0.00 4.75
761 1142 1.469940 GCAGTGCTAGATGCGTGTAGT 60.470 52.381 8.18 0.00 46.63 2.73
812 1207 2.512515 GCTAGACTTGGCGCCAGG 60.513 66.667 34.48 34.48 0.00 4.45
842 1237 1.104577 TGAGTTGACCGCCCCAAAAC 61.105 55.000 0.00 0.00 0.00 2.43
850 1245 2.831333 AGATGATGATGAGTTGACCGC 58.169 47.619 0.00 0.00 0.00 5.68
859 1254 8.071177 TCTGTACTTGAGAAAGATGATGATGA 57.929 34.615 0.00 0.00 0.00 2.92
860 1255 8.890124 ATCTGTACTTGAGAAAGATGATGATG 57.110 34.615 0.00 0.00 0.00 3.07
861 1256 8.926374 AGATCTGTACTTGAGAAAGATGATGAT 58.074 33.333 0.00 0.00 0.00 2.45
888 1292 4.810790 AGATCGTGTGTAGTTTCCTCTTG 58.189 43.478 0.00 0.00 0.00 3.02
891 1295 4.705337 AGAGATCGTGTGTAGTTTCCTC 57.295 45.455 0.00 0.00 0.00 3.71
938 1365 3.887110 TGACCTTCAGTGAAACGTCTCTA 59.113 43.478 23.32 9.32 45.86 2.43
946 1373 4.623932 AGCTATGTGACCTTCAGTGAAA 57.376 40.909 7.06 0.00 0.00 2.69
953 1382 3.493524 GGCTTCCTAGCTATGTGACCTTC 60.494 52.174 0.00 0.00 46.90 3.46
1065 1505 1.679898 CTTGTCCGCCTTCTTCCCT 59.320 57.895 0.00 0.00 0.00 4.20
1094 1543 3.704231 CTCCATCGCCTGGGGTTGG 62.704 68.421 26.68 26.68 45.98 3.77
1152 1601 0.334676 TGAAAAGGATGGGCGGGATT 59.665 50.000 0.00 0.00 0.00 3.01
1280 1729 0.250124 TAAACACAGACTGCCACCCG 60.250 55.000 1.25 0.00 0.00 5.28
1281 1730 1.202770 AGTAAACACAGACTGCCACCC 60.203 52.381 1.25 0.00 0.00 4.61
1282 1731 1.873591 CAGTAAACACAGACTGCCACC 59.126 52.381 1.25 0.00 36.91 4.61
1287 1736 3.546815 GCACAAGCAGTAAACACAGACTG 60.547 47.826 0.00 0.00 44.88 3.51
1288 1737 2.614057 GCACAAGCAGTAAACACAGACT 59.386 45.455 0.00 0.00 41.58 3.24
1289 1738 2.987046 GCACAAGCAGTAAACACAGAC 58.013 47.619 0.00 0.00 41.58 3.51
1357 1807 1.272781 GCTAGTCAGCTAGTGCAACG 58.727 55.000 0.00 0.00 44.93 4.10
1410 1860 2.494870 GCTGCAGGTGGATCAGAATTTT 59.505 45.455 17.12 0.00 0.00 1.82
1478 1937 3.694043 TGATTGTTGGTCGAATCCTGA 57.306 42.857 0.00 0.00 0.00 3.86
1490 1949 1.517694 GGCTGGCGCATGATTGTTG 60.518 57.895 10.83 0.00 38.10 3.33
1510 1969 1.667724 CGGTAGTACACGGACTGGTAG 59.332 57.143 2.06 0.00 0.00 3.18
1522 1981 3.367025 GTGTCATGTTCTTGCGGTAGTAC 59.633 47.826 0.00 0.00 0.00 2.73
1798 2272 1.201429 AGAGGTCGCCCATGGTCTTT 61.201 55.000 11.73 0.00 0.00 2.52
2089 2569 0.905337 CCGGGTTGAGGAAGAGGACT 60.905 60.000 0.00 0.00 0.00 3.85
2171 2651 1.688627 GGTCGGGTGGAGAAGATACCT 60.689 57.143 0.00 0.00 34.87 3.08
2370 2851 0.261696 TCCTGATCGTGATCCTCCCA 59.738 55.000 7.36 0.00 37.02 4.37
2371 2852 0.965439 CTCCTGATCGTGATCCTCCC 59.035 60.000 7.36 0.00 37.02 4.30
2378 2859 1.550327 AGTGCTTCTCCTGATCGTGA 58.450 50.000 0.00 0.00 0.00 4.35
2382 2863 1.537135 GGCGTAGTGCTTCTCCTGATC 60.537 57.143 0.00 0.00 45.43 2.92
2383 2864 0.461961 GGCGTAGTGCTTCTCCTGAT 59.538 55.000 0.00 0.00 45.43 2.90
2384 2865 1.605058 GGGCGTAGTGCTTCTCCTGA 61.605 60.000 0.00 0.00 45.43 3.86
2386 2867 2.711922 CGGGCGTAGTGCTTCTCCT 61.712 63.158 0.00 0.00 45.43 3.69
2387 2868 2.202756 CGGGCGTAGTGCTTCTCC 60.203 66.667 0.00 0.00 45.43 3.71
2388 2869 2.886124 GCGGGCGTAGTGCTTCTC 60.886 66.667 0.00 0.00 45.43 2.87
2389 2870 4.452733 GGCGGGCGTAGTGCTTCT 62.453 66.667 0.00 0.00 45.43 2.85
2599 3080 0.826715 TGCTCAGCAGGTACATCTCC 59.173 55.000 0.00 0.00 33.32 3.71
2926 3413 4.676924 GGATATACGTACGGTGTAAACTGC 59.323 45.833 21.06 0.00 0.00 4.40
2941 3428 8.082852 ACATTAGACAACTAGCAAGGATATACG 58.917 37.037 0.00 0.00 0.00 3.06
2942 3429 9.765795 AACATTAGACAACTAGCAAGGATATAC 57.234 33.333 0.00 0.00 0.00 1.47
2944 3431 9.686683 AAAACATTAGACAACTAGCAAGGATAT 57.313 29.630 0.00 0.00 0.00 1.63
2946 3433 8.409358 AAAAACATTAGACAACTAGCAAGGAT 57.591 30.769 0.00 0.00 0.00 3.24
2998 7149 8.710551 GTGTCATGATTTGCATTGTTTATTTGA 58.289 29.630 0.00 0.00 34.15 2.69
3022 7173 7.065923 TCCATATAATACGGATCGAAGAGAGTG 59.934 40.741 0.00 0.00 43.63 3.51
3051 7202 6.205101 ACTTACATAAAGTGTACTCCCTCG 57.795 41.667 0.00 0.00 46.90 4.63
3083 7234 5.989477 TCTGGGGTCACTTAATTCATACTG 58.011 41.667 0.00 0.00 0.00 2.74
3084 7235 6.636454 TTCTGGGGTCACTTAATTCATACT 57.364 37.500 0.00 0.00 0.00 2.12
3085 7236 5.297029 GCTTCTGGGGTCACTTAATTCATAC 59.703 44.000 0.00 0.00 0.00 2.39
3086 7237 5.437060 GCTTCTGGGGTCACTTAATTCATA 58.563 41.667 0.00 0.00 0.00 2.15
3087 7238 4.273318 GCTTCTGGGGTCACTTAATTCAT 58.727 43.478 0.00 0.00 0.00 2.57
3089 7240 3.017442 GGCTTCTGGGGTCACTTAATTC 58.983 50.000 0.00 0.00 0.00 2.17
3090 7241 2.378547 TGGCTTCTGGGGTCACTTAATT 59.621 45.455 0.00 0.00 0.00 1.40
3091 7242 1.992557 TGGCTTCTGGGGTCACTTAAT 59.007 47.619 0.00 0.00 0.00 1.40
3093 7244 0.984230 CTGGCTTCTGGGGTCACTTA 59.016 55.000 0.00 0.00 0.00 2.24
3095 7246 0.768221 TTCTGGCTTCTGGGGTCACT 60.768 55.000 0.00 0.00 0.00 3.41
3096 7247 0.606673 GTTCTGGCTTCTGGGGTCAC 60.607 60.000 0.00 0.00 0.00 3.67
3097 7248 0.768221 AGTTCTGGCTTCTGGGGTCA 60.768 55.000 0.00 0.00 0.00 4.02
3098 7249 1.066071 GTAGTTCTGGCTTCTGGGGTC 60.066 57.143 0.00 0.00 0.00 4.46
3099 7250 0.984995 GTAGTTCTGGCTTCTGGGGT 59.015 55.000 0.00 0.00 0.00 4.95
3100 7251 0.253327 GGTAGTTCTGGCTTCTGGGG 59.747 60.000 0.00 0.00 0.00 4.96
3136 7287 2.871182 TTCTATGTCTAGCCACGCAG 57.129 50.000 0.00 0.00 0.00 5.18
3199 7350 8.297470 ACCATTGAATCAACTTAATGCTACAT 57.703 30.769 0.00 0.00 31.03 2.29
3239 7390 4.979815 GGTTAACGGGAAACATGACAAAAG 59.020 41.667 0.00 0.00 0.00 2.27
3243 7394 2.144730 CGGTTAACGGGAAACATGACA 58.855 47.619 0.00 0.00 39.42 3.58
3278 7430 3.776347 TTCCGGGGCGCAACTGAAA 62.776 57.895 10.83 0.00 0.00 2.69
3282 7434 1.468506 AAAATTTCCGGGGCGCAACT 61.469 50.000 10.83 0.00 0.00 3.16
3288 7440 2.689471 ACGGTAATAAAATTTCCGGGGC 59.311 45.455 18.02 0.00 44.54 5.80
3328 7481 6.996106 CATTGCAATGTACCATTTTCACATC 58.004 36.000 27.81 0.00 31.82 3.06
3358 7511 1.017701 TTCAGCTGCGAGCATGACTG 61.018 55.000 9.47 13.34 45.56 3.51
3363 7516 0.524862 CCTTTTTCAGCTGCGAGCAT 59.475 50.000 9.47 0.00 45.56 3.79
3391 7544 1.365699 TCAAAACCTCCTTATCGCGC 58.634 50.000 0.00 0.00 0.00 6.86
3392 7545 3.385079 GTTCAAAACCTCCTTATCGCG 57.615 47.619 0.00 0.00 0.00 5.87
3413 7566 2.307098 ACTTTCCATCTCAAGGTCCCTG 59.693 50.000 0.00 0.00 0.00 4.45
3489 7642 8.614469 TCAAACAAACTTTCAATTCAAAACCT 57.386 26.923 0.00 0.00 0.00 3.50
3490 7643 9.838975 AATCAAACAAACTTTCAATTCAAAACC 57.161 25.926 0.00 0.00 0.00 3.27
3547 7727 1.274167 ACTGGTAACCGCGAATCTTGA 59.726 47.619 8.23 0.00 0.00 3.02
3565 7745 2.281539 CCTTTGGGGTCGGTTAAACT 57.718 50.000 0.00 0.00 0.00 2.66
3684 7865 3.720818 GCAACACGCATCGATATTTTCTG 59.279 43.478 0.00 0.00 41.79 3.02
3689 7870 1.662517 TGGCAACACGCATCGATATT 58.337 45.000 0.00 0.00 46.17 1.28
3781 7968 6.398234 AGCTGTCTCACAATAATACGATCT 57.602 37.500 0.00 0.00 0.00 2.75
3783 7970 7.849804 AAAAGCTGTCTCACAATAATACGAT 57.150 32.000 0.00 0.00 0.00 3.73
3841 8028 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
3843 8030 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3844 8031 2.335092 ATTCTGATGCAGAGGCCGGG 62.335 60.000 2.18 0.00 41.75 5.73
3845 8032 1.147824 ATTCTGATGCAGAGGCCGG 59.852 57.895 0.00 0.00 41.75 6.13
3846 8033 0.179065 TCATTCTGATGCAGAGGCCG 60.179 55.000 0.00 0.00 41.75 6.13
3847 8034 1.880675 CATCATTCTGATGCAGAGGCC 59.119 52.381 0.00 0.00 46.37 5.19
3856 8043 6.304624 AGATGGTTGTATGCATCATTCTGAT 58.695 36.000 0.19 0.00 37.65 2.90
3857 8044 5.687780 AGATGGTTGTATGCATCATTCTGA 58.312 37.500 0.19 0.00 0.00 3.27
3858 8045 6.387041 AAGATGGTTGTATGCATCATTCTG 57.613 37.500 0.19 0.00 0.00 3.02
3859 8046 8.701908 AATAAGATGGTTGTATGCATCATTCT 57.298 30.769 0.19 0.00 0.00 2.40
3862 8049 8.796475 GGTTAATAAGATGGTTGTATGCATCAT 58.204 33.333 0.19 0.00 0.00 2.45
3863 8050 7.777440 TGGTTAATAAGATGGTTGTATGCATCA 59.223 33.333 0.19 0.00 0.00 3.07
3864 8051 8.165239 TGGTTAATAAGATGGTTGTATGCATC 57.835 34.615 0.19 0.00 0.00 3.91
3865 8052 8.532186 TTGGTTAATAAGATGGTTGTATGCAT 57.468 30.769 3.79 3.79 0.00 3.96
3866 8053 7.946381 TTGGTTAATAAGATGGTTGTATGCA 57.054 32.000 0.00 0.00 0.00 3.96
3880 8067 9.832445 TGGCACTTTTTGTTATTTGGTTAATAA 57.168 25.926 0.00 0.00 36.57 1.40
3881 8068 9.832445 TTGGCACTTTTTGTTATTTGGTTAATA 57.168 25.926 0.00 0.00 0.00 0.98
3882 8069 8.616942 GTTGGCACTTTTTGTTATTTGGTTAAT 58.383 29.630 0.00 0.00 0.00 1.40
3883 8070 7.606456 TGTTGGCACTTTTTGTTATTTGGTTAA 59.394 29.630 0.00 0.00 0.00 2.01
3884 8071 7.103641 TGTTGGCACTTTTTGTTATTTGGTTA 58.896 30.769 0.00 0.00 0.00 2.85
3885 8072 5.940470 TGTTGGCACTTTTTGTTATTTGGTT 59.060 32.000 0.00 0.00 0.00 3.67
3886 8073 5.491982 TGTTGGCACTTTTTGTTATTTGGT 58.508 33.333 0.00 0.00 0.00 3.67
3887 8074 6.428385 TTGTTGGCACTTTTTGTTATTTGG 57.572 33.333 0.00 0.00 0.00 3.28
3888 8075 6.093357 ACCTTGTTGGCACTTTTTGTTATTTG 59.907 34.615 0.00 0.00 40.22 2.32
3889 8076 6.176896 ACCTTGTTGGCACTTTTTGTTATTT 58.823 32.000 0.00 0.00 40.22 1.40
3890 8077 5.739959 ACCTTGTTGGCACTTTTTGTTATT 58.260 33.333 0.00 0.00 40.22 1.40
3891 8078 5.351948 ACCTTGTTGGCACTTTTTGTTAT 57.648 34.783 0.00 0.00 40.22 1.89
3892 8079 4.810191 ACCTTGTTGGCACTTTTTGTTA 57.190 36.364 0.00 0.00 40.22 2.41
3893 8080 3.694043 ACCTTGTTGGCACTTTTTGTT 57.306 38.095 0.00 0.00 40.22 2.83
3894 8081 3.694043 AACCTTGTTGGCACTTTTTGT 57.306 38.095 0.00 0.00 40.22 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.