Multiple sequence alignment - TraesCS7B01G075300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G075300 chr7B 100.000 3179 0 0 358 3536 84650656 84653834 0.000000e+00 5871
1 TraesCS7B01G075300 chr7B 89.642 2848 217 27 695 3536 84700699 84703474 0.000000e+00 3554
2 TraesCS7B01G075300 chr7B 90.455 1823 160 7 695 2513 84765792 84763980 0.000000e+00 2390
3 TraesCS7B01G075300 chr7B 79.670 969 146 24 2598 3536 610225657 610224710 0.000000e+00 651
4 TraesCS7B01G075300 chr7B 100.000 178 0 0 1 178 84650299 84650476 2.630000e-86 329
5 TraesCS7B01G075300 chr7B 88.235 272 27 1 358 629 405072496 405072762 1.580000e-83 320
6 TraesCS7B01G075300 chr7A 89.977 2664 233 11 868 3525 126195660 126198295 0.000000e+00 3410
7 TraesCS7B01G075300 chr7A 93.538 1826 76 18 695 2513 126191028 126192818 0.000000e+00 2680
8 TraesCS7B01G075300 chr7A 91.388 1823 147 4 695 2513 126367947 126366131 0.000000e+00 2488
9 TraesCS7B01G075300 chr7A 83.333 138 21 2 5 141 636123988 636124124 3.710000e-25 126
10 TraesCS7B01G075300 chr7D 94.678 1804 80 7 795 2596 123454996 123456785 0.000000e+00 2785
11 TraesCS7B01G075300 chr7D 89.350 1878 179 15 656 2513 123491065 123489189 0.000000e+00 2340
12 TraesCS7B01G075300 chr7D 89.177 1737 182 1 1084 2820 123462138 123463868 0.000000e+00 2161
13 TraesCS7B01G075300 chr7D 86.733 1108 140 5 1407 2513 123484830 123483729 0.000000e+00 1225
14 TraesCS7B01G075300 chr7D 81.914 951 127 23 2599 3525 20958950 20959879 0.000000e+00 761
15 TraesCS7B01G075300 chr7D 80.579 968 137 24 2598 3536 497570700 497569755 0.000000e+00 699
16 TraesCS7B01G075300 chr7D 84.828 145 22 0 1 145 123454633 123454777 2.840000e-31 147
17 TraesCS7B01G075300 chr7D 86.719 128 7 7 646 763 123454871 123454998 2.210000e-27 134
18 TraesCS7B01G075300 chr6A 81.684 950 129 20 2599 3525 10982476 10983403 0.000000e+00 749
19 TraesCS7B01G075300 chr6A 88.686 274 24 2 358 631 171454190 171453924 9.460000e-86 327
20 TraesCS7B01G075300 chr6A 87.153 288 31 2 358 645 84705700 84705981 4.400000e-84 322
21 TraesCS7B01G075300 chr2D 81.115 969 134 22 2595 3535 314051468 314052415 0.000000e+00 730
22 TraesCS7B01G075300 chr5A 81.152 955 129 28 2599 3525 43568285 43567354 0.000000e+00 719
23 TraesCS7B01G075300 chr5A 84.337 415 56 5 2599 3012 23936809 23937215 7.110000e-107 398
24 TraesCS7B01G075300 chr5A 79.769 173 30 5 10 178 444888338 444888509 1.720000e-23 121
25 TraesCS7B01G075300 chr3A 80.882 952 135 26 2598 3525 724303068 724302140 0.000000e+00 706
26 TraesCS7B01G075300 chr3A 85.764 288 36 1 358 645 230599426 230599144 2.060000e-77 300
27 TraesCS7B01G075300 chr3A 82.877 146 22 3 5 148 503702336 503702192 1.030000e-25 128
28 TraesCS7B01G075300 chr2A 80.628 955 139 24 2595 3525 733698445 733697513 0.000000e+00 697
29 TraesCS7B01G075300 chr2A 87.500 288 31 1 358 645 262399702 262399984 9.460000e-86 327
30 TraesCS7B01G075300 chr6D 81.839 859 115 20 2668 3504 329886084 329886923 0.000000e+00 684
31 TraesCS7B01G075300 chr4B 81.851 562 79 9 2598 3139 536849086 536848528 5.380000e-123 451
32 TraesCS7B01G075300 chr4B 86.411 287 31 5 358 643 373008305 373008026 1.230000e-79 307
33 TraesCS7B01G075300 chr4B 84.076 157 22 3 3 157 25011808 25011653 7.910000e-32 148
34 TraesCS7B01G075300 chr4B 82.069 145 23 3 10 152 498407069 498407212 1.720000e-23 121
35 TraesCS7B01G075300 chr4D 88.194 288 29 1 358 645 144187989 144187707 4.370000e-89 339
36 TraesCS7B01G075300 chr4D 88.194 288 27 4 358 643 280893559 280893277 1.570000e-88 337
37 TraesCS7B01G075300 chr2B 88.194 288 29 1 358 645 643213767 643214049 4.370000e-89 339
38 TraesCS7B01G075300 chr3D 84.247 146 22 1 3 147 586597116 586597261 1.320000e-29 141
39 TraesCS7B01G075300 chr3B 82.895 152 23 3 3 152 776503322 776503172 2.210000e-27 134
40 TraesCS7B01G075300 chr1D 81.119 143 25 2 3 145 310164679 310164539 2.880000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G075300 chr7B 84650299 84653834 3535 False 3100 5871 100.000000 1 3536 2 chr7B.!!$F3 3535
1 TraesCS7B01G075300 chr7B 84700699 84703474 2775 False 3554 3554 89.642000 695 3536 1 chr7B.!!$F1 2841
2 TraesCS7B01G075300 chr7B 84763980 84765792 1812 True 2390 2390 90.455000 695 2513 1 chr7B.!!$R1 1818
3 TraesCS7B01G075300 chr7B 610224710 610225657 947 True 651 651 79.670000 2598 3536 1 chr7B.!!$R2 938
4 TraesCS7B01G075300 chr7A 126191028 126198295 7267 False 3045 3410 91.757500 695 3525 2 chr7A.!!$F2 2830
5 TraesCS7B01G075300 chr7A 126366131 126367947 1816 True 2488 2488 91.388000 695 2513 1 chr7A.!!$R1 1818
6 TraesCS7B01G075300 chr7D 123489189 123491065 1876 True 2340 2340 89.350000 656 2513 1 chr7D.!!$R2 1857
7 TraesCS7B01G075300 chr7D 123462138 123463868 1730 False 2161 2161 89.177000 1084 2820 1 chr7D.!!$F2 1736
8 TraesCS7B01G075300 chr7D 123483729 123484830 1101 True 1225 1225 86.733000 1407 2513 1 chr7D.!!$R1 1106
9 TraesCS7B01G075300 chr7D 123454633 123456785 2152 False 1022 2785 88.741667 1 2596 3 chr7D.!!$F3 2595
10 TraesCS7B01G075300 chr7D 20958950 20959879 929 False 761 761 81.914000 2599 3525 1 chr7D.!!$F1 926
11 TraesCS7B01G075300 chr7D 497569755 497570700 945 True 699 699 80.579000 2598 3536 1 chr7D.!!$R3 938
12 TraesCS7B01G075300 chr6A 10982476 10983403 927 False 749 749 81.684000 2599 3525 1 chr6A.!!$F1 926
13 TraesCS7B01G075300 chr2D 314051468 314052415 947 False 730 730 81.115000 2595 3535 1 chr2D.!!$F1 940
14 TraesCS7B01G075300 chr5A 43567354 43568285 931 True 719 719 81.152000 2599 3525 1 chr5A.!!$R1 926
15 TraesCS7B01G075300 chr3A 724302140 724303068 928 True 706 706 80.882000 2598 3525 1 chr3A.!!$R3 927
16 TraesCS7B01G075300 chr2A 733697513 733698445 932 True 697 697 80.628000 2595 3525 1 chr2A.!!$R1 930
17 TraesCS7B01G075300 chr6D 329886084 329886923 839 False 684 684 81.839000 2668 3504 1 chr6D.!!$F1 836
18 TraesCS7B01G075300 chr4B 536848528 536849086 558 True 451 451 81.851000 2598 3139 1 chr4B.!!$R3 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 478 0.034756 CCATGAGACGGTGTGACCAA 59.965 55.0 0.00 0.0 38.47 3.67 F
542 564 0.034756 ATATCATTACGCGCTGCCCA 59.965 50.0 5.73 0.0 0.00 5.36 F
986 1023 0.106819 TCTCTCCTACCAGTACGGGC 60.107 60.0 12.40 0.0 40.22 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 6012 0.621571 TGGCATAGGAGGCAGAAGGT 60.622 55.000 0.0 0.0 39.34 3.50 R
1767 6278 1.340017 CCGATGGTCCACACCTTCATT 60.340 52.381 0.0 0.0 44.02 2.57 R
2848 7366 1.475403 CTCAGCCCGAAGTTCCTCTA 58.525 55.000 0.0 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.682128 TTATTTCAGAATTTTCGGCAATACAC 57.318 30.769 0.00 0.00 0.00 2.90
44 45 4.553429 CAGAATTTTCGGCAATACACGTTC 59.447 41.667 0.00 0.00 0.00 3.95
55 56 4.996976 CACGTTCAGTGGGAGGAG 57.003 61.111 0.00 0.00 46.77 3.69
58 59 0.469331 ACGTTCAGTGGGAGGAGACA 60.469 55.000 0.00 0.00 0.00 3.41
62 63 3.339141 GTTCAGTGGGAGGAGACATTTC 58.661 50.000 0.00 0.00 0.00 2.17
64 65 0.905357 AGTGGGAGGAGACATTTCCG 59.095 55.000 0.00 0.00 42.29 4.30
85 86 1.086067 CGACTACGAGGTGCCTACGA 61.086 60.000 13.88 2.00 42.66 3.43
92 93 1.534175 CGAGGTGCCTACGATGACTTC 60.534 57.143 0.00 0.00 0.00 3.01
93 94 1.476891 GAGGTGCCTACGATGACTTCA 59.523 52.381 0.00 0.00 0.00 3.02
105 106 9.098355 CCTACGATGACTTCATAAAATCTCAAA 57.902 33.333 0.00 0.00 36.57 2.69
114 115 8.031277 ACTTCATAAAATCTCAAAATGACAGGC 58.969 33.333 0.00 0.00 0.00 4.85
119 120 1.937546 CTCAAAATGACAGGCCGGCC 61.938 60.000 39.29 39.29 0.00 6.13
129 130 4.344865 GGCCGGCCCAGTTTCTCA 62.345 66.667 36.64 0.00 0.00 3.27
136 137 2.519013 GGCCCAGTTTCTCAAAGATGT 58.481 47.619 0.00 0.00 0.00 3.06
138 139 3.057245 GGCCCAGTTTCTCAAAGATGTTC 60.057 47.826 0.00 0.00 0.00 3.18
145 146 6.656693 CAGTTTCTCAAAGATGTTCATAGGGT 59.343 38.462 0.00 0.00 0.00 4.34
146 147 7.824289 CAGTTTCTCAAAGATGTTCATAGGGTA 59.176 37.037 0.00 0.00 0.00 3.69
147 148 8.043710 AGTTTCTCAAAGATGTTCATAGGGTAG 58.956 37.037 0.00 0.00 0.00 3.18
154 176 5.772004 AGATGTTCATAGGGTAGAGTGAGT 58.228 41.667 0.00 0.00 0.00 3.41
160 182 5.386060 TCATAGGGTAGAGTGAGTGTATGG 58.614 45.833 0.00 0.00 0.00 2.74
161 183 3.033659 AGGGTAGAGTGAGTGTATGGG 57.966 52.381 0.00 0.00 0.00 4.00
163 185 3.530564 AGGGTAGAGTGAGTGTATGGGTA 59.469 47.826 0.00 0.00 0.00 3.69
175 197 8.076781 GTGAGTGTATGGGTATATATATGAGCG 58.923 40.741 5.44 0.00 0.00 5.03
176 198 6.982852 AGTGTATGGGTATATATATGAGCGC 58.017 40.000 0.00 0.00 0.00 5.92
380 402 6.721571 AGTACAAAATTACATGGACACGAG 57.278 37.500 0.00 0.00 32.58 4.18
381 403 5.642063 AGTACAAAATTACATGGACACGAGG 59.358 40.000 0.00 0.00 32.58 4.63
382 404 3.190535 ACAAAATTACATGGACACGAGGC 59.809 43.478 0.00 0.00 0.00 4.70
383 405 2.779755 AATTACATGGACACGAGGCA 57.220 45.000 0.00 0.00 0.00 4.75
384 406 2.779755 ATTACATGGACACGAGGCAA 57.220 45.000 0.00 0.00 0.00 4.52
385 407 1.803334 TTACATGGACACGAGGCAAC 58.197 50.000 0.00 0.00 0.00 4.17
386 408 0.389296 TACATGGACACGAGGCAACG 60.389 55.000 0.00 2.85 46.39 4.10
398 420 4.988065 GCAACGTGCAGAGAGGTA 57.012 55.556 0.00 0.00 44.26 3.08
399 421 2.743195 GCAACGTGCAGAGAGGTAG 58.257 57.895 0.00 0.00 44.26 3.18
400 422 0.737715 GCAACGTGCAGAGAGGTAGG 60.738 60.000 0.00 0.00 44.26 3.18
401 423 0.888619 CAACGTGCAGAGAGGTAGGA 59.111 55.000 0.00 0.00 0.00 2.94
402 424 1.272490 CAACGTGCAGAGAGGTAGGAA 59.728 52.381 0.00 0.00 0.00 3.36
403 425 0.889306 ACGTGCAGAGAGGTAGGAAC 59.111 55.000 0.00 0.00 0.00 3.62
404 426 0.179161 CGTGCAGAGAGGTAGGAACG 60.179 60.000 0.00 0.00 0.00 3.95
405 427 0.458716 GTGCAGAGAGGTAGGAACGC 60.459 60.000 0.00 0.00 0.00 4.84
406 428 1.142097 GCAGAGAGGTAGGAACGCC 59.858 63.158 0.00 0.00 0.00 5.68
407 429 1.605058 GCAGAGAGGTAGGAACGCCA 61.605 60.000 0.00 0.00 36.29 5.69
408 430 1.115467 CAGAGAGGTAGGAACGCCAT 58.885 55.000 0.00 0.00 36.29 4.40
409 431 1.115467 AGAGAGGTAGGAACGCCATG 58.885 55.000 0.00 0.00 36.29 3.66
410 432 1.112113 GAGAGGTAGGAACGCCATGA 58.888 55.000 0.00 0.00 36.29 3.07
411 433 1.067821 GAGAGGTAGGAACGCCATGAG 59.932 57.143 0.00 0.00 36.29 2.90
412 434 1.112113 GAGGTAGGAACGCCATGAGA 58.888 55.000 0.00 0.00 36.29 3.27
413 435 1.480954 GAGGTAGGAACGCCATGAGAA 59.519 52.381 0.00 0.00 36.29 2.87
414 436 1.482593 AGGTAGGAACGCCATGAGAAG 59.517 52.381 0.00 0.00 36.29 2.85
415 437 1.480954 GGTAGGAACGCCATGAGAAGA 59.519 52.381 0.00 0.00 36.29 2.87
416 438 2.541556 GTAGGAACGCCATGAGAAGAC 58.458 52.381 0.00 0.00 36.29 3.01
417 439 0.108615 AGGAACGCCATGAGAAGACG 60.109 55.000 0.00 0.00 36.29 4.18
418 440 0.389948 GGAACGCCATGAGAAGACGT 60.390 55.000 0.00 0.00 38.88 4.34
419 441 3.606886 AACGCCATGAGAAGACGTT 57.393 47.368 0.00 0.00 41.67 3.99
420 442 1.429463 AACGCCATGAGAAGACGTTC 58.571 50.000 0.00 0.00 42.77 3.95
421 443 0.603569 ACGCCATGAGAAGACGTTCT 59.396 50.000 0.00 0.00 46.32 3.01
422 444 1.000955 ACGCCATGAGAAGACGTTCTT 59.999 47.619 0.00 0.00 43.50 2.52
433 455 5.071955 GAAGACGTTCTTCTTGTCACTTG 57.928 43.478 15.92 0.00 46.98 3.16
434 456 4.124851 AGACGTTCTTCTTGTCACTTGT 57.875 40.909 0.00 0.00 35.09 3.16
435 457 4.113354 AGACGTTCTTCTTGTCACTTGTC 58.887 43.478 0.00 0.00 35.09 3.18
436 458 4.113354 GACGTTCTTCTTGTCACTTGTCT 58.887 43.478 0.00 0.00 32.91 3.41
437 459 4.113354 ACGTTCTTCTTGTCACTTGTCTC 58.887 43.478 0.00 0.00 0.00 3.36
438 460 3.491267 CGTTCTTCTTGTCACTTGTCTCC 59.509 47.826 0.00 0.00 0.00 3.71
439 461 4.442706 GTTCTTCTTGTCACTTGTCTCCA 58.557 43.478 0.00 0.00 0.00 3.86
440 462 4.963318 TCTTCTTGTCACTTGTCTCCAT 57.037 40.909 0.00 0.00 0.00 3.41
441 463 4.635223 TCTTCTTGTCACTTGTCTCCATG 58.365 43.478 0.00 0.00 0.00 3.66
442 464 4.344968 TCTTCTTGTCACTTGTCTCCATGA 59.655 41.667 0.00 0.00 0.00 3.07
443 465 4.263018 TCTTGTCACTTGTCTCCATGAG 57.737 45.455 0.00 0.00 0.00 2.90
444 466 3.897505 TCTTGTCACTTGTCTCCATGAGA 59.102 43.478 0.00 0.00 36.22 3.27
452 474 3.356814 TCTCCATGAGACGGTGTGA 57.643 52.632 0.00 0.00 33.35 3.58
453 475 0.888619 TCTCCATGAGACGGTGTGAC 59.111 55.000 0.00 0.00 33.35 3.67
454 476 0.108615 CTCCATGAGACGGTGTGACC 60.109 60.000 0.00 0.00 34.05 4.02
455 477 0.830023 TCCATGAGACGGTGTGACCA 60.830 55.000 0.00 0.00 38.47 4.02
456 478 0.034756 CCATGAGACGGTGTGACCAA 59.965 55.000 0.00 0.00 38.47 3.67
457 479 1.542328 CCATGAGACGGTGTGACCAAA 60.542 52.381 0.00 0.00 38.47 3.28
458 480 1.800586 CATGAGACGGTGTGACCAAAG 59.199 52.381 0.00 0.00 38.47 2.77
459 481 1.116308 TGAGACGGTGTGACCAAAGA 58.884 50.000 0.00 0.00 38.47 2.52
460 482 1.691976 TGAGACGGTGTGACCAAAGAT 59.308 47.619 0.00 0.00 38.47 2.40
461 483 2.288825 TGAGACGGTGTGACCAAAGATC 60.289 50.000 0.00 0.00 38.47 2.75
462 484 1.002087 AGACGGTGTGACCAAAGATCC 59.998 52.381 0.00 0.00 38.47 3.36
463 485 0.762418 ACGGTGTGACCAAAGATCCA 59.238 50.000 0.00 0.00 38.47 3.41
464 486 1.142060 ACGGTGTGACCAAAGATCCAA 59.858 47.619 0.00 0.00 38.47 3.53
465 487 2.226330 CGGTGTGACCAAAGATCCAAA 58.774 47.619 0.00 0.00 38.47 3.28
466 488 2.819608 CGGTGTGACCAAAGATCCAAAT 59.180 45.455 0.00 0.00 38.47 2.32
467 489 3.119849 CGGTGTGACCAAAGATCCAAATC 60.120 47.826 0.00 0.00 38.47 2.17
468 490 3.826157 GGTGTGACCAAAGATCCAAATCA 59.174 43.478 0.00 0.00 38.42 2.57
469 491 4.082571 GGTGTGACCAAAGATCCAAATCAG 60.083 45.833 0.00 0.00 38.42 2.90
470 492 3.507233 TGTGACCAAAGATCCAAATCAGC 59.493 43.478 0.00 0.00 34.07 4.26
471 493 3.507233 GTGACCAAAGATCCAAATCAGCA 59.493 43.478 0.00 0.00 34.07 4.41
472 494 4.022068 GTGACCAAAGATCCAAATCAGCAA 60.022 41.667 0.00 0.00 34.07 3.91
473 495 4.773674 TGACCAAAGATCCAAATCAGCAAT 59.226 37.500 0.00 0.00 34.07 3.56
474 496 5.105635 TGACCAAAGATCCAAATCAGCAATC 60.106 40.000 0.00 0.00 34.07 2.67
475 497 4.773674 ACCAAAGATCCAAATCAGCAATCA 59.226 37.500 0.00 0.00 34.07 2.57
476 498 5.105473 ACCAAAGATCCAAATCAGCAATCAG 60.105 40.000 0.00 0.00 34.07 2.90
477 499 5.348986 CAAAGATCCAAATCAGCAATCAGG 58.651 41.667 0.00 0.00 34.07 3.86
478 500 3.563223 AGATCCAAATCAGCAATCAGGG 58.437 45.455 0.00 0.00 34.07 4.45
479 501 1.477553 TCCAAATCAGCAATCAGGGC 58.522 50.000 0.00 0.00 0.00 5.19
480 502 0.462789 CCAAATCAGCAATCAGGGCC 59.537 55.000 0.00 0.00 0.00 5.80
481 503 0.462789 CAAATCAGCAATCAGGGCCC 59.537 55.000 16.46 16.46 0.00 5.80
482 504 0.337428 AAATCAGCAATCAGGGCCCT 59.663 50.000 22.28 22.28 0.00 5.19
483 505 0.396695 AATCAGCAATCAGGGCCCTG 60.397 55.000 41.73 41.73 44.86 4.45
492 514 2.270434 TCAGGGCCCTGAGAGTTATT 57.730 50.000 44.71 8.96 46.80 1.40
493 515 3.414759 TCAGGGCCCTGAGAGTTATTA 57.585 47.619 44.71 23.76 46.80 0.98
494 516 3.039011 TCAGGGCCCTGAGAGTTATTAC 58.961 50.000 44.71 3.83 46.80 1.89
495 517 2.771943 CAGGGCCCTGAGAGTTATTACA 59.228 50.000 44.19 0.00 46.30 2.41
496 518 3.041946 AGGGCCCTGAGAGTTATTACAG 58.958 50.000 28.05 0.00 0.00 2.74
497 519 3.039011 GGGCCCTGAGAGTTATTACAGA 58.961 50.000 17.04 0.00 32.90 3.41
498 520 3.454812 GGGCCCTGAGAGTTATTACAGAA 59.545 47.826 17.04 0.00 32.90 3.02
499 521 4.443621 GGCCCTGAGAGTTATTACAGAAC 58.556 47.826 0.00 0.00 32.90 3.01
500 522 4.081087 GGCCCTGAGAGTTATTACAGAACA 60.081 45.833 0.00 0.00 32.90 3.18
501 523 5.396884 GGCCCTGAGAGTTATTACAGAACAT 60.397 44.000 0.00 0.00 32.90 2.71
502 524 6.116126 GCCCTGAGAGTTATTACAGAACATT 58.884 40.000 0.00 0.00 32.90 2.71
503 525 6.037610 GCCCTGAGAGTTATTACAGAACATTG 59.962 42.308 0.00 0.00 32.90 2.82
504 526 7.331026 CCCTGAGAGTTATTACAGAACATTGA 58.669 38.462 0.00 0.00 32.90 2.57
505 527 7.989741 CCCTGAGAGTTATTACAGAACATTGAT 59.010 37.037 0.00 0.00 32.90 2.57
506 528 9.039870 CCTGAGAGTTATTACAGAACATTGATC 57.960 37.037 0.00 0.00 32.90 2.92
507 529 9.591792 CTGAGAGTTATTACAGAACATTGATCA 57.408 33.333 0.00 0.00 32.90 2.92
519 541 9.167311 ACAGAACATTGATCATAACTCCTAAAC 57.833 33.333 0.00 0.00 0.00 2.01
520 542 9.166173 CAGAACATTGATCATAACTCCTAAACA 57.834 33.333 0.00 0.00 0.00 2.83
521 543 9.739276 AGAACATTGATCATAACTCCTAAACAA 57.261 29.630 0.00 0.00 0.00 2.83
522 544 9.774742 GAACATTGATCATAACTCCTAAACAAC 57.225 33.333 0.00 0.00 0.00 3.32
523 545 8.862325 ACATTGATCATAACTCCTAAACAACA 57.138 30.769 0.00 0.00 0.00 3.33
524 546 9.466497 ACATTGATCATAACTCCTAAACAACAT 57.534 29.630 0.00 0.00 0.00 2.71
534 556 7.478520 ACTCCTAAACAACATATCATTACGC 57.521 36.000 0.00 0.00 0.00 4.42
535 557 6.200286 ACTCCTAAACAACATATCATTACGCG 59.800 38.462 3.53 3.53 0.00 6.01
536 558 5.050634 TCCTAAACAACATATCATTACGCGC 60.051 40.000 5.73 0.00 0.00 6.86
537 559 4.875544 AAACAACATATCATTACGCGCT 57.124 36.364 5.73 0.00 0.00 5.92
538 560 3.859745 ACAACATATCATTACGCGCTG 57.140 42.857 5.73 0.99 0.00 5.18
539 561 2.032894 ACAACATATCATTACGCGCTGC 60.033 45.455 5.73 0.00 0.00 5.25
540 562 1.148310 ACATATCATTACGCGCTGCC 58.852 50.000 5.73 0.00 0.00 4.85
541 563 0.443869 CATATCATTACGCGCTGCCC 59.556 55.000 5.73 0.00 0.00 5.36
542 564 0.034756 ATATCATTACGCGCTGCCCA 59.965 50.000 5.73 0.00 0.00 5.36
543 565 0.599991 TATCATTACGCGCTGCCCAG 60.600 55.000 5.73 0.00 0.00 4.45
544 566 2.310327 ATCATTACGCGCTGCCCAGA 62.310 55.000 5.73 0.00 0.00 3.86
545 567 1.889105 CATTACGCGCTGCCCAGAT 60.889 57.895 5.73 0.00 0.00 2.90
546 568 1.595382 ATTACGCGCTGCCCAGATC 60.595 57.895 5.73 0.00 0.00 2.75
547 569 2.032860 ATTACGCGCTGCCCAGATCT 62.033 55.000 5.73 0.00 0.00 2.75
548 570 1.388837 TTACGCGCTGCCCAGATCTA 61.389 55.000 5.73 0.00 0.00 1.98
549 571 1.179174 TACGCGCTGCCCAGATCTAT 61.179 55.000 5.73 0.00 0.00 1.98
550 572 2.025969 CGCGCTGCCCAGATCTATG 61.026 63.158 5.56 0.00 0.00 2.23
551 573 1.670406 GCGCTGCCCAGATCTATGG 60.670 63.158 0.00 0.00 40.29 2.74
552 574 1.750930 CGCTGCCCAGATCTATGGT 59.249 57.895 11.12 0.00 38.81 3.55
553 575 0.107456 CGCTGCCCAGATCTATGGTT 59.893 55.000 11.12 0.00 38.81 3.67
554 576 1.875576 CGCTGCCCAGATCTATGGTTC 60.876 57.143 11.12 0.00 38.81 3.62
555 577 1.544314 GCTGCCCAGATCTATGGTTCC 60.544 57.143 11.12 0.00 38.81 3.62
556 578 1.770658 CTGCCCAGATCTATGGTTCCA 59.229 52.381 11.12 0.00 38.81 3.53
557 579 2.374504 CTGCCCAGATCTATGGTTCCAT 59.625 50.000 9.37 9.37 38.81 3.41
558 580 3.584406 CTGCCCAGATCTATGGTTCCATA 59.416 47.826 10.59 10.59 38.81 2.74
559 581 3.584406 TGCCCAGATCTATGGTTCCATAG 59.416 47.826 24.84 24.84 44.21 2.23
560 582 3.584848 GCCCAGATCTATGGTTCCATAGT 59.415 47.826 27.58 19.16 43.63 2.12
561 583 4.777896 GCCCAGATCTATGGTTCCATAGTA 59.222 45.833 27.58 18.91 43.63 1.82
562 584 5.248477 GCCCAGATCTATGGTTCCATAGTAA 59.752 44.000 27.58 16.37 43.63 2.24
563 585 6.069963 GCCCAGATCTATGGTTCCATAGTAAT 60.070 42.308 27.58 19.28 43.63 1.89
564 586 7.334090 CCCAGATCTATGGTTCCATAGTAATG 58.666 42.308 27.58 23.22 43.63 1.90
565 587 7.180946 CCCAGATCTATGGTTCCATAGTAATGA 59.819 40.741 27.58 15.44 43.63 2.57
566 588 8.037758 CCAGATCTATGGTTCCATAGTAATGAC 58.962 40.741 27.58 17.26 43.63 3.06
567 589 8.588472 CAGATCTATGGTTCCATAGTAATGACA 58.412 37.037 27.58 14.21 43.63 3.58
568 590 9.331466 AGATCTATGGTTCCATAGTAATGACAT 57.669 33.333 27.58 17.19 43.63 3.06
569 591 9.376075 GATCTATGGTTCCATAGTAATGACATG 57.624 37.037 27.58 8.94 43.63 3.21
570 592 8.491045 TCTATGGTTCCATAGTAATGACATGA 57.509 34.615 27.58 10.62 43.63 3.07
571 593 8.588472 TCTATGGTTCCATAGTAATGACATGAG 58.412 37.037 27.58 9.70 43.63 2.90
572 594 6.806668 TGGTTCCATAGTAATGACATGAGA 57.193 37.500 0.00 0.00 34.84 3.27
573 595 7.194112 TGGTTCCATAGTAATGACATGAGAA 57.806 36.000 0.00 0.00 34.84 2.87
574 596 7.047891 TGGTTCCATAGTAATGACATGAGAAC 58.952 38.462 0.00 12.40 34.84 3.01
575 597 6.483640 GGTTCCATAGTAATGACATGAGAACC 59.516 42.308 17.75 17.75 39.71 3.62
576 598 6.806668 TCCATAGTAATGACATGAGAACCA 57.193 37.500 0.00 0.00 34.84 3.67
577 599 6.820335 TCCATAGTAATGACATGAGAACCAG 58.180 40.000 0.00 0.00 34.84 4.00
578 600 6.611236 TCCATAGTAATGACATGAGAACCAGA 59.389 38.462 0.00 0.00 34.84 3.86
579 601 6.927936 CCATAGTAATGACATGAGAACCAGAG 59.072 42.308 0.00 0.00 34.84 3.35
580 602 7.201947 CCATAGTAATGACATGAGAACCAGAGA 60.202 40.741 0.00 0.00 34.84 3.10
581 603 5.971763 AGTAATGACATGAGAACCAGAGAC 58.028 41.667 0.00 0.00 0.00 3.36
582 604 3.902881 ATGACATGAGAACCAGAGACC 57.097 47.619 0.00 0.00 0.00 3.85
583 605 2.608623 TGACATGAGAACCAGAGACCA 58.391 47.619 0.00 0.00 0.00 4.02
584 606 3.176411 TGACATGAGAACCAGAGACCAT 58.824 45.455 0.00 0.00 0.00 3.55
585 607 3.055602 TGACATGAGAACCAGAGACCATG 60.056 47.826 0.00 0.00 37.84 3.66
586 608 2.286872 CATGAGAACCAGAGACCATGC 58.713 52.381 0.00 0.00 0.00 4.06
587 609 1.649321 TGAGAACCAGAGACCATGCT 58.351 50.000 0.00 0.00 0.00 3.79
588 610 1.980765 TGAGAACCAGAGACCATGCTT 59.019 47.619 0.00 0.00 0.00 3.91
589 611 2.373169 TGAGAACCAGAGACCATGCTTT 59.627 45.455 0.00 0.00 0.00 3.51
590 612 3.181440 TGAGAACCAGAGACCATGCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
591 613 3.823304 GAGAACCAGAGACCATGCTTTTT 59.177 43.478 0.00 0.00 0.00 1.94
592 614 3.571401 AGAACCAGAGACCATGCTTTTTG 59.429 43.478 0.00 0.00 0.00 2.44
593 615 2.242043 ACCAGAGACCATGCTTTTTGG 58.758 47.619 0.00 0.00 40.26 3.28
594 616 1.547372 CCAGAGACCATGCTTTTTGGG 59.453 52.381 0.00 0.00 38.64 4.12
595 617 1.547372 CAGAGACCATGCTTTTTGGGG 59.453 52.381 0.00 0.00 38.64 4.96
596 618 1.428912 AGAGACCATGCTTTTTGGGGA 59.571 47.619 0.00 0.00 38.64 4.81
597 619 2.158325 AGAGACCATGCTTTTTGGGGAA 60.158 45.455 0.00 0.00 38.64 3.97
598 620 2.232208 GAGACCATGCTTTTTGGGGAAG 59.768 50.000 0.00 0.00 38.64 3.46
599 621 1.276138 GACCATGCTTTTTGGGGAAGG 59.724 52.381 0.00 0.00 38.64 3.46
600 622 1.351076 CCATGCTTTTTGGGGAAGGT 58.649 50.000 0.00 0.00 0.00 3.50
601 623 1.002315 CCATGCTTTTTGGGGAAGGTG 59.998 52.381 0.00 0.00 0.00 4.00
602 624 1.969923 CATGCTTTTTGGGGAAGGTGA 59.030 47.619 0.00 0.00 0.00 4.02
603 625 1.408969 TGCTTTTTGGGGAAGGTGAC 58.591 50.000 0.00 0.00 0.00 3.67
604 626 0.313987 GCTTTTTGGGGAAGGTGACG 59.686 55.000 0.00 0.00 0.00 4.35
605 627 0.958822 CTTTTTGGGGAAGGTGACGG 59.041 55.000 0.00 0.00 0.00 4.79
606 628 0.468400 TTTTTGGGGAAGGTGACGGG 60.468 55.000 0.00 0.00 0.00 5.28
607 629 2.360439 TTTTGGGGAAGGTGACGGGG 62.360 60.000 0.00 0.00 0.00 5.73
610 632 4.410400 GGGAAGGTGACGGGGCAG 62.410 72.222 0.00 0.00 0.00 4.85
611 633 3.319198 GGAAGGTGACGGGGCAGA 61.319 66.667 0.00 0.00 0.00 4.26
612 634 2.266055 GAAGGTGACGGGGCAGAG 59.734 66.667 0.00 0.00 0.00 3.35
613 635 3.316573 GAAGGTGACGGGGCAGAGG 62.317 68.421 0.00 0.00 0.00 3.69
614 636 3.846405 AAGGTGACGGGGCAGAGGA 62.846 63.158 0.00 0.00 0.00 3.71
615 637 3.775654 GGTGACGGGGCAGAGGAG 61.776 72.222 0.00 0.00 0.00 3.69
616 638 2.997897 GTGACGGGGCAGAGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
617 639 1.681327 GTGACGGGGCAGAGGAGTA 60.681 63.158 0.00 0.00 0.00 2.59
618 640 1.043673 GTGACGGGGCAGAGGAGTAT 61.044 60.000 0.00 0.00 0.00 2.12
619 641 0.554305 TGACGGGGCAGAGGAGTATA 59.446 55.000 0.00 0.00 0.00 1.47
620 642 0.960286 GACGGGGCAGAGGAGTATAC 59.040 60.000 0.00 0.00 0.00 1.47
621 643 0.469518 ACGGGGCAGAGGAGTATACC 60.470 60.000 0.00 0.00 0.00 2.73
622 644 0.469331 CGGGGCAGAGGAGTATACCA 60.469 60.000 0.00 0.00 0.00 3.25
623 645 1.802553 GGGGCAGAGGAGTATACCAA 58.197 55.000 0.00 0.00 0.00 3.67
624 646 2.124411 GGGGCAGAGGAGTATACCAAA 58.876 52.381 0.00 0.00 0.00 3.28
625 647 2.104963 GGGGCAGAGGAGTATACCAAAG 59.895 54.545 0.00 0.00 0.00 2.77
626 648 2.485657 GGGCAGAGGAGTATACCAAAGC 60.486 54.545 0.00 0.00 0.00 3.51
627 649 2.436173 GGCAGAGGAGTATACCAAAGCT 59.564 50.000 0.00 0.00 0.00 3.74
628 650 3.493524 GGCAGAGGAGTATACCAAAGCTC 60.494 52.174 0.00 0.00 0.00 4.09
629 651 3.133003 GCAGAGGAGTATACCAAAGCTCA 59.867 47.826 0.00 0.00 0.00 4.26
630 652 4.739137 GCAGAGGAGTATACCAAAGCTCAG 60.739 50.000 0.00 0.00 0.00 3.35
631 653 4.646945 CAGAGGAGTATACCAAAGCTCAGA 59.353 45.833 0.00 0.00 0.00 3.27
632 654 4.892934 AGAGGAGTATACCAAAGCTCAGAG 59.107 45.833 0.00 0.00 0.00 3.35
633 655 4.873010 AGGAGTATACCAAAGCTCAGAGA 58.127 43.478 0.00 0.00 0.00 3.10
634 656 5.463154 AGGAGTATACCAAAGCTCAGAGAT 58.537 41.667 0.00 0.00 0.00 2.75
635 657 5.304101 AGGAGTATACCAAAGCTCAGAGATG 59.696 44.000 0.00 0.00 0.00 2.90
636 658 5.303078 GGAGTATACCAAAGCTCAGAGATGA 59.697 44.000 0.00 0.00 0.00 2.92
637 659 6.155475 AGTATACCAAAGCTCAGAGATGAC 57.845 41.667 0.00 0.00 0.00 3.06
638 660 2.376808 ACCAAAGCTCAGAGATGACG 57.623 50.000 0.00 0.00 0.00 4.35
639 661 1.620819 ACCAAAGCTCAGAGATGACGT 59.379 47.619 0.00 0.00 0.00 4.34
640 662 2.266554 CCAAAGCTCAGAGATGACGTC 58.733 52.381 9.11 9.11 0.00 4.34
641 663 1.916651 CAAAGCTCAGAGATGACGTCG 59.083 52.381 11.62 0.00 0.00 5.12
642 664 0.453793 AAGCTCAGAGATGACGTCGG 59.546 55.000 11.62 0.00 0.00 4.79
643 665 0.678366 AGCTCAGAGATGACGTCGGT 60.678 55.000 11.62 1.47 0.00 4.69
644 666 0.248296 GCTCAGAGATGACGTCGGTC 60.248 60.000 11.62 11.59 43.71 4.79
681 703 2.338500 GTCACTGGTTTGTCCTCGATC 58.662 52.381 0.00 0.00 37.07 3.69
686 708 2.100916 CTGGTTTGTCCTCGATCGGTAT 59.899 50.000 16.41 0.00 37.07 2.73
742 772 0.529773 GTCGCCCTCATATTCACGCA 60.530 55.000 0.00 0.00 0.00 5.24
745 775 1.873486 CGCCCTCATATTCACGCATCA 60.873 52.381 0.00 0.00 0.00 3.07
764 797 7.117379 ACGCATCAGTCATCATCAACATAATAG 59.883 37.037 0.00 0.00 0.00 1.73
786 819 3.861689 GCGGACAAACACTATAGTGGTAC 59.138 47.826 31.20 20.72 46.84 3.34
813 850 6.015688 ACTGAAAATCTTGTAGTGACCTCGTA 60.016 38.462 0.00 0.00 0.00 3.43
938 975 2.579684 GAACTAGCGACAGCCCCAGG 62.580 65.000 0.00 0.00 46.67 4.45
986 1023 0.106819 TCTCTCCTACCAGTACGGGC 60.107 60.000 12.40 0.00 40.22 6.13
1324 1373 1.505353 GACGTCGACAAGATCCCGT 59.495 57.895 17.16 4.61 34.93 5.28
1420 1469 2.179767 CGTACCCGACGTGCATCA 59.820 61.111 0.00 0.00 46.86 3.07
1515 6026 0.835971 TGTGCACCTTCTGCCTCCTA 60.836 55.000 15.69 0.00 46.51 2.94
1682 6193 0.737715 GCTGACGAAATCGAGCTGGT 60.738 55.000 10.16 0.00 43.02 4.00
2039 6551 2.183300 GTACGGCGAGGATGTGCA 59.817 61.111 16.62 0.00 0.00 4.57
2130 6642 0.323302 TGCTTATCCTGAACCACGCA 59.677 50.000 0.00 0.00 0.00 5.24
2175 6687 3.281240 GGGTGGAACTCGACGCTA 58.719 61.111 2.33 0.00 36.74 4.26
2181 6693 1.654954 GGAACTCGACGCTAGAGGCA 61.655 60.000 0.00 0.00 41.91 4.75
2190 6702 3.032609 CTAGAGGCAATCGCGGCG 61.033 66.667 17.70 17.70 39.92 6.46
2322 6834 2.758979 GTGGGTGTCGAAGAAGGAGATA 59.241 50.000 0.00 0.00 39.69 1.98
2331 6843 1.501582 AGAAGGAGATAGTGGTGGGC 58.498 55.000 0.00 0.00 0.00 5.36
2407 6919 2.844369 AGGAGAGAAGGAGGAAAGCAT 58.156 47.619 0.00 0.00 0.00 3.79
2513 7025 4.778143 GGACGCGGGAGGTTGCAT 62.778 66.667 12.47 0.00 0.00 3.96
2529 7041 1.452651 CATGGCCGTGCAGAAGGAT 60.453 57.895 13.11 0.00 0.00 3.24
2565 7077 1.468908 CGCCAGAGTCTTACAGAGCAG 60.469 57.143 0.00 0.00 0.00 4.24
2627 7142 9.462606 TTTTAAGAAGGAAGACTCAAGAAAAGT 57.537 29.630 0.00 0.00 0.00 2.66
2832 7350 4.439016 CGGAGTCTTCCTAGTGAGCTTAAC 60.439 50.000 0.00 0.00 41.67 2.01
2848 7366 4.010349 GCTTAACCCAGTAGAGCAAACAT 58.990 43.478 0.00 0.00 33.68 2.71
2937 7457 5.063944 GTGAACATCGTAATCATGTTGCTCT 59.936 40.000 4.34 0.00 43.16 4.09
3045 7585 0.034896 GGCACGAAGGGAGAACTCAA 59.965 55.000 4.23 0.00 0.00 3.02
3126 7666 4.448210 ACAAGCACGAAGAGGAAAAACTA 58.552 39.130 0.00 0.00 0.00 2.24
3174 7714 7.961325 AACAAACAAACAAACAAACAAACAG 57.039 28.000 0.00 0.00 0.00 3.16
3217 7761 5.511373 CCATAACTCGAATCAGATTAGCCCA 60.511 44.000 0.00 0.00 0.00 5.36
3230 7775 0.687757 TAGCCCACGGAATCAGCTCT 60.688 55.000 0.00 0.00 35.03 4.09
3245 7790 0.321671 GCTCTGTGTCCTTGCTACCA 59.678 55.000 0.00 0.00 0.00 3.25
3258 7803 4.141937 CCTTGCTACCACATCTTGCTACTA 60.142 45.833 0.00 0.00 0.00 1.82
3334 7881 0.033781 GCAAGCACAGATTGGCCAAA 59.966 50.000 24.71 6.13 28.93 3.28
3354 7903 6.260714 GCCAAAGAACAATTCAAAAGGAATGT 59.739 34.615 0.00 0.00 45.46 2.71
3370 7919 8.721133 AAAGGAATGTGGACCTAAACTAATTT 57.279 30.769 0.00 0.00 35.25 1.82
3372 7921 8.803397 AGGAATGTGGACCTAAACTAATTTAC 57.197 34.615 0.00 0.00 34.47 2.01
3378 7927 8.623030 TGTGGACCTAAACTAATTTACAAACAC 58.377 33.333 0.00 0.00 0.00 3.32
3439 7989 1.376424 AACCACCATCGCTCAGCAG 60.376 57.895 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.424403 CACTGAACGTGTATTGCCGA 58.576 50.000 0.00 0.00 38.84 5.54
30 31 0.442310 CCACTGAACGTGTATTGCCG 59.558 55.000 0.00 0.00 42.20 5.69
33 34 2.028476 TCCTCCCACTGAACGTGTATTG 60.028 50.000 0.00 0.00 42.20 1.90
34 35 2.233922 CTCCTCCCACTGAACGTGTATT 59.766 50.000 0.00 0.00 42.20 1.89
40 41 0.898320 ATGTCTCCTCCCACTGAACG 59.102 55.000 0.00 0.00 0.00 3.95
44 45 1.406069 CGGAAATGTCTCCTCCCACTG 60.406 57.143 0.00 0.00 32.82 3.66
50 51 1.473278 AGTCGACGGAAATGTCTCCTC 59.527 52.381 10.46 0.00 36.71 3.71
64 65 0.376502 GTAGGCACCTCGTAGTCGAC 59.623 60.000 7.70 7.70 41.35 4.20
77 78 6.582636 AGATTTTATGAAGTCATCGTAGGCA 58.417 36.000 0.00 0.00 37.76 4.75
92 93 5.745294 CGGCCTGTCATTTTGAGATTTTATG 59.255 40.000 0.00 0.00 0.00 1.90
93 94 5.163519 CCGGCCTGTCATTTTGAGATTTTAT 60.164 40.000 0.00 0.00 0.00 1.40
105 106 4.431131 CTGGGCCGGCCTGTCATT 62.431 66.667 42.70 0.00 36.10 2.57
112 113 3.860930 TTGAGAAACTGGGCCGGCC 62.861 63.158 38.57 38.57 0.00 6.13
114 115 0.250727 TCTTTGAGAAACTGGGCCGG 60.251 55.000 11.83 11.83 0.00 6.13
119 120 6.094603 CCCTATGAACATCTTTGAGAAACTGG 59.905 42.308 0.00 0.00 0.00 4.00
129 130 6.670027 ACTCACTCTACCCTATGAACATCTTT 59.330 38.462 0.00 0.00 0.00 2.52
136 137 5.833667 CCATACACTCACTCTACCCTATGAA 59.166 44.000 0.00 0.00 0.00 2.57
138 139 4.524714 CCCATACACTCACTCTACCCTATG 59.475 50.000 0.00 0.00 0.00 2.23
357 379 5.642063 CCTCGTGTCCATGTAATTTTGTACT 59.358 40.000 0.00 0.00 0.00 2.73
358 380 5.672819 GCCTCGTGTCCATGTAATTTTGTAC 60.673 44.000 0.00 0.00 0.00 2.90
359 381 4.393680 GCCTCGTGTCCATGTAATTTTGTA 59.606 41.667 0.00 0.00 0.00 2.41
360 382 3.190535 GCCTCGTGTCCATGTAATTTTGT 59.809 43.478 0.00 0.00 0.00 2.83
361 383 3.190327 TGCCTCGTGTCCATGTAATTTTG 59.810 43.478 0.00 0.00 0.00 2.44
362 384 3.417101 TGCCTCGTGTCCATGTAATTTT 58.583 40.909 0.00 0.00 0.00 1.82
363 385 3.066291 TGCCTCGTGTCCATGTAATTT 57.934 42.857 0.00 0.00 0.00 1.82
364 386 2.747446 GTTGCCTCGTGTCCATGTAATT 59.253 45.455 0.00 0.00 0.00 1.40
365 387 2.356135 GTTGCCTCGTGTCCATGTAAT 58.644 47.619 0.00 0.00 0.00 1.89
366 388 1.803334 GTTGCCTCGTGTCCATGTAA 58.197 50.000 0.00 0.00 0.00 2.41
367 389 0.389296 CGTTGCCTCGTGTCCATGTA 60.389 55.000 0.00 0.00 0.00 2.29
368 390 1.667830 CGTTGCCTCGTGTCCATGT 60.668 57.895 0.00 0.00 0.00 3.21
369 391 1.667830 ACGTTGCCTCGTGTCCATG 60.668 57.895 2.63 0.00 42.56 3.66
370 392 2.741092 ACGTTGCCTCGTGTCCAT 59.259 55.556 2.63 0.00 42.56 3.41
376 398 2.356313 CTCTGCACGTTGCCTCGT 60.356 61.111 7.38 0.00 44.23 4.18
377 399 2.049156 TCTCTGCACGTTGCCTCG 60.049 61.111 7.38 0.00 44.23 4.63
378 400 1.739562 CCTCTCTGCACGTTGCCTC 60.740 63.158 7.38 0.00 44.23 4.70
379 401 1.185618 TACCTCTCTGCACGTTGCCT 61.186 55.000 7.38 0.00 44.23 4.75
380 402 0.737715 CTACCTCTCTGCACGTTGCC 60.738 60.000 7.38 0.00 44.23 4.52
381 403 0.737715 CCTACCTCTCTGCACGTTGC 60.738 60.000 3.44 3.44 45.29 4.17
382 404 0.888619 TCCTACCTCTCTGCACGTTG 59.111 55.000 0.00 0.00 0.00 4.10
383 405 1.272769 GTTCCTACCTCTCTGCACGTT 59.727 52.381 0.00 0.00 0.00 3.99
384 406 0.889306 GTTCCTACCTCTCTGCACGT 59.111 55.000 0.00 0.00 0.00 4.49
385 407 0.179161 CGTTCCTACCTCTCTGCACG 60.179 60.000 0.00 0.00 0.00 5.34
386 408 0.458716 GCGTTCCTACCTCTCTGCAC 60.459 60.000 0.00 0.00 0.00 4.57
387 409 1.605058 GGCGTTCCTACCTCTCTGCA 61.605 60.000 0.00 0.00 0.00 4.41
388 410 1.142097 GGCGTTCCTACCTCTCTGC 59.858 63.158 0.00 0.00 0.00 4.26
389 411 1.115467 ATGGCGTTCCTACCTCTCTG 58.885 55.000 0.00 0.00 0.00 3.35
390 412 1.115467 CATGGCGTTCCTACCTCTCT 58.885 55.000 0.00 0.00 0.00 3.10
391 413 1.067821 CTCATGGCGTTCCTACCTCTC 59.932 57.143 0.00 0.00 0.00 3.20
392 414 1.115467 CTCATGGCGTTCCTACCTCT 58.885 55.000 0.00 0.00 0.00 3.69
393 415 1.112113 TCTCATGGCGTTCCTACCTC 58.888 55.000 0.00 0.00 0.00 3.85
394 416 1.482593 CTTCTCATGGCGTTCCTACCT 59.517 52.381 0.00 0.00 0.00 3.08
395 417 1.480954 TCTTCTCATGGCGTTCCTACC 59.519 52.381 0.00 0.00 0.00 3.18
396 418 2.541556 GTCTTCTCATGGCGTTCCTAC 58.458 52.381 0.00 0.00 0.00 3.18
397 419 1.134367 CGTCTTCTCATGGCGTTCCTA 59.866 52.381 0.00 0.00 0.00 2.94
398 420 0.108615 CGTCTTCTCATGGCGTTCCT 60.109 55.000 0.00 0.00 0.00 3.36
399 421 0.389948 ACGTCTTCTCATGGCGTTCC 60.390 55.000 0.00 0.00 31.37 3.62
400 422 1.429463 AACGTCTTCTCATGGCGTTC 58.571 50.000 0.21 0.00 41.05 3.95
401 423 1.000955 AGAACGTCTTCTCATGGCGTT 59.999 47.619 5.83 5.83 46.34 4.84
402 424 0.603569 AGAACGTCTTCTCATGGCGT 59.396 50.000 0.00 0.00 30.11 5.68
403 425 1.656095 GAAGAACGTCTTCTCATGGCG 59.344 52.381 15.92 0.00 46.98 5.69
412 434 4.504858 ACAAGTGACAAGAAGAACGTCTT 58.495 39.130 0.00 0.00 39.87 3.01
413 435 4.113354 GACAAGTGACAAGAAGAACGTCT 58.887 43.478 0.00 0.00 0.00 4.18
414 436 4.113354 AGACAAGTGACAAGAAGAACGTC 58.887 43.478 0.00 0.00 0.00 4.34
415 437 4.113354 GAGACAAGTGACAAGAAGAACGT 58.887 43.478 0.00 0.00 0.00 3.99
416 438 3.491267 GGAGACAAGTGACAAGAAGAACG 59.509 47.826 0.00 0.00 0.00 3.95
417 439 4.442706 TGGAGACAAGTGACAAGAAGAAC 58.557 43.478 0.00 0.00 37.44 3.01
418 440 4.753516 TGGAGACAAGTGACAAGAAGAA 57.246 40.909 0.00 0.00 37.44 2.52
434 456 0.888619 GTCACACCGTCTCATGGAGA 59.111 55.000 0.00 0.00 36.22 3.71
435 457 0.108615 GGTCACACCGTCTCATGGAG 60.109 60.000 0.00 0.00 0.00 3.86
436 458 0.830023 TGGTCACACCGTCTCATGGA 60.830 55.000 0.00 0.00 42.58 3.41
437 459 0.034756 TTGGTCACACCGTCTCATGG 59.965 55.000 0.00 0.00 42.58 3.66
438 460 1.800586 CTTTGGTCACACCGTCTCATG 59.199 52.381 0.00 0.00 42.58 3.07
439 461 1.691976 TCTTTGGTCACACCGTCTCAT 59.308 47.619 0.00 0.00 42.58 2.90
440 462 1.116308 TCTTTGGTCACACCGTCTCA 58.884 50.000 0.00 0.00 42.58 3.27
441 463 2.338500 GATCTTTGGTCACACCGTCTC 58.662 52.381 0.00 0.00 42.58 3.36
442 464 1.002087 GGATCTTTGGTCACACCGTCT 59.998 52.381 0.00 0.00 42.58 4.18
443 465 1.270625 TGGATCTTTGGTCACACCGTC 60.271 52.381 0.00 0.00 42.58 4.79
444 466 0.762418 TGGATCTTTGGTCACACCGT 59.238 50.000 0.00 0.00 42.58 4.83
445 467 1.890876 TTGGATCTTTGGTCACACCG 58.109 50.000 0.00 0.00 42.58 4.94
446 468 3.826157 TGATTTGGATCTTTGGTCACACC 59.174 43.478 0.00 0.00 34.39 4.16
447 469 4.616835 GCTGATTTGGATCTTTGGTCACAC 60.617 45.833 0.00 0.00 33.28 3.82
448 470 3.507233 GCTGATTTGGATCTTTGGTCACA 59.493 43.478 0.00 0.00 33.28 3.58
449 471 3.507233 TGCTGATTTGGATCTTTGGTCAC 59.493 43.478 0.00 0.00 33.28 3.67
450 472 3.765381 TGCTGATTTGGATCTTTGGTCA 58.235 40.909 0.00 0.00 33.28 4.02
451 473 4.789012 TTGCTGATTTGGATCTTTGGTC 57.211 40.909 0.00 0.00 33.28 4.02
452 474 4.773674 TGATTGCTGATTTGGATCTTTGGT 59.226 37.500 0.00 0.00 33.28 3.67
453 475 5.333299 TGATTGCTGATTTGGATCTTTGG 57.667 39.130 0.00 0.00 33.28 3.28
454 476 5.348986 CCTGATTGCTGATTTGGATCTTTG 58.651 41.667 0.00 0.00 33.28 2.77
455 477 4.404715 CCCTGATTGCTGATTTGGATCTTT 59.595 41.667 0.00 0.00 33.28 2.52
456 478 3.958798 CCCTGATTGCTGATTTGGATCTT 59.041 43.478 0.00 0.00 33.28 2.40
457 479 3.563223 CCCTGATTGCTGATTTGGATCT 58.437 45.455 0.00 0.00 33.28 2.75
458 480 2.035576 GCCCTGATTGCTGATTTGGATC 59.964 50.000 0.00 0.00 0.00 3.36
459 481 2.037144 GCCCTGATTGCTGATTTGGAT 58.963 47.619 0.00 0.00 0.00 3.41
460 482 1.477553 GCCCTGATTGCTGATTTGGA 58.522 50.000 0.00 0.00 0.00 3.53
461 483 0.462789 GGCCCTGATTGCTGATTTGG 59.537 55.000 0.00 0.00 0.00 3.28
462 484 0.462789 GGGCCCTGATTGCTGATTTG 59.537 55.000 17.04 0.00 0.00 2.32
463 485 0.337428 AGGGCCCTGATTGCTGATTT 59.663 50.000 28.05 0.00 0.00 2.17
464 486 0.396695 CAGGGCCCTGATTGCTGATT 60.397 55.000 44.19 5.82 46.30 2.57
465 487 1.229359 CAGGGCCCTGATTGCTGAT 59.771 57.895 44.19 6.46 46.30 2.90
466 488 1.924939 TCAGGGCCCTGATTGCTGA 60.925 57.895 44.71 25.43 46.80 4.26
467 489 2.679092 TCAGGGCCCTGATTGCTG 59.321 61.111 44.71 23.49 46.80 4.41
474 496 2.771943 TGTAATAACTCTCAGGGCCCTG 59.228 50.000 41.73 41.73 44.86 4.45
475 497 3.041946 CTGTAATAACTCTCAGGGCCCT 58.958 50.000 22.28 22.28 0.00 5.19
476 498 3.039011 TCTGTAATAACTCTCAGGGCCC 58.961 50.000 16.46 16.46 0.00 5.80
477 499 4.081087 TGTTCTGTAATAACTCTCAGGGCC 60.081 45.833 0.00 0.00 0.00 5.80
478 500 5.086104 TGTTCTGTAATAACTCTCAGGGC 57.914 43.478 0.00 0.00 0.00 5.19
479 501 7.331026 TCAATGTTCTGTAATAACTCTCAGGG 58.669 38.462 0.00 0.00 0.00 4.45
480 502 8.954950 ATCAATGTTCTGTAATAACTCTCAGG 57.045 34.615 0.00 0.00 0.00 3.86
481 503 9.591792 TGATCAATGTTCTGTAATAACTCTCAG 57.408 33.333 0.00 0.00 0.00 3.35
493 515 9.167311 GTTTAGGAGTTATGATCAATGTTCTGT 57.833 33.333 0.00 0.00 0.00 3.41
494 516 9.166173 TGTTTAGGAGTTATGATCAATGTTCTG 57.834 33.333 0.00 0.00 0.00 3.02
495 517 9.739276 TTGTTTAGGAGTTATGATCAATGTTCT 57.261 29.630 0.00 0.00 0.00 3.01
496 518 9.774742 GTTGTTTAGGAGTTATGATCAATGTTC 57.225 33.333 0.00 0.00 0.00 3.18
497 519 9.295825 TGTTGTTTAGGAGTTATGATCAATGTT 57.704 29.630 0.00 0.00 0.00 2.71
498 520 8.862325 TGTTGTTTAGGAGTTATGATCAATGT 57.138 30.769 0.00 0.00 0.00 2.71
508 530 9.037737 GCGTAATGATATGTTGTTTAGGAGTTA 57.962 33.333 0.00 0.00 0.00 2.24
509 531 7.254319 CGCGTAATGATATGTTGTTTAGGAGTT 60.254 37.037 0.00 0.00 0.00 3.01
510 532 6.200286 CGCGTAATGATATGTTGTTTAGGAGT 59.800 38.462 0.00 0.00 0.00 3.85
511 533 6.581370 CGCGTAATGATATGTTGTTTAGGAG 58.419 40.000 0.00 0.00 0.00 3.69
512 534 5.050634 GCGCGTAATGATATGTTGTTTAGGA 60.051 40.000 8.43 0.00 0.00 2.94
513 535 5.050363 AGCGCGTAATGATATGTTGTTTAGG 60.050 40.000 8.43 0.00 0.00 2.69
514 536 5.840781 CAGCGCGTAATGATATGTTGTTTAG 59.159 40.000 8.43 0.00 0.00 1.85
515 537 5.733299 CAGCGCGTAATGATATGTTGTTTA 58.267 37.500 8.43 0.00 0.00 2.01
516 538 4.587306 CAGCGCGTAATGATATGTTGTTT 58.413 39.130 8.43 0.00 0.00 2.83
517 539 3.546020 GCAGCGCGTAATGATATGTTGTT 60.546 43.478 8.43 0.00 0.00 2.83
518 540 2.032894 GCAGCGCGTAATGATATGTTGT 60.033 45.455 8.43 0.00 0.00 3.32
519 541 2.563976 GCAGCGCGTAATGATATGTTG 58.436 47.619 8.43 0.00 0.00 3.33
520 542 1.531149 GGCAGCGCGTAATGATATGTT 59.469 47.619 8.43 0.00 0.00 2.71
521 543 1.148310 GGCAGCGCGTAATGATATGT 58.852 50.000 8.43 0.00 0.00 2.29
522 544 0.443869 GGGCAGCGCGTAATGATATG 59.556 55.000 8.43 0.00 0.00 1.78
523 545 0.034756 TGGGCAGCGCGTAATGATAT 59.965 50.000 8.43 0.00 0.00 1.63
524 546 0.599991 CTGGGCAGCGCGTAATGATA 60.600 55.000 8.43 0.00 0.00 2.15
525 547 1.889105 CTGGGCAGCGCGTAATGAT 60.889 57.895 8.43 0.00 0.00 2.45
526 548 2.310327 ATCTGGGCAGCGCGTAATGA 62.310 55.000 8.43 0.00 0.00 2.57
527 549 1.835483 GATCTGGGCAGCGCGTAATG 61.835 60.000 8.43 5.82 0.00 1.90
528 550 1.595382 GATCTGGGCAGCGCGTAAT 60.595 57.895 8.43 0.00 0.00 1.89
529 551 1.388837 TAGATCTGGGCAGCGCGTAA 61.389 55.000 8.43 0.00 0.00 3.18
530 552 1.179174 ATAGATCTGGGCAGCGCGTA 61.179 55.000 8.43 0.00 0.00 4.42
531 553 2.502492 ATAGATCTGGGCAGCGCGT 61.502 57.895 8.43 0.00 0.00 6.01
532 554 2.025969 CATAGATCTGGGCAGCGCG 61.026 63.158 5.18 0.00 0.00 6.86
533 555 1.670406 CCATAGATCTGGGCAGCGC 60.670 63.158 5.18 0.00 32.28 5.92
534 556 0.107456 AACCATAGATCTGGGCAGCG 59.893 55.000 5.18 0.00 40.85 5.18
535 557 1.544314 GGAACCATAGATCTGGGCAGC 60.544 57.143 5.18 0.52 40.85 5.25
536 558 1.770658 TGGAACCATAGATCTGGGCAG 59.229 52.381 5.18 0.00 40.85 4.85
537 559 1.891933 TGGAACCATAGATCTGGGCA 58.108 50.000 5.18 0.00 40.85 5.36
547 569 8.491045 TCTCATGTCATTACTATGGAACCATA 57.509 34.615 12.21 12.21 37.82 2.74
548 570 7.379059 TCTCATGTCATTACTATGGAACCAT 57.621 36.000 11.20 11.20 40.19 3.55
549 571 6.806668 TCTCATGTCATTACTATGGAACCA 57.193 37.500 0.00 0.00 32.40 3.67
550 572 6.483640 GGTTCTCATGTCATTACTATGGAACC 59.516 42.308 14.81 14.81 40.55 3.62
551 573 7.047891 TGGTTCTCATGTCATTACTATGGAAC 58.952 38.462 0.00 0.00 34.68 3.62
552 574 7.125659 TCTGGTTCTCATGTCATTACTATGGAA 59.874 37.037 0.00 0.00 32.40 3.53
553 575 6.611236 TCTGGTTCTCATGTCATTACTATGGA 59.389 38.462 0.00 0.00 32.40 3.41
554 576 6.820335 TCTGGTTCTCATGTCATTACTATGG 58.180 40.000 0.00 0.00 32.40 2.74
555 577 7.651304 GTCTCTGGTTCTCATGTCATTACTATG 59.349 40.741 0.00 0.00 0.00 2.23
556 578 7.201956 GGTCTCTGGTTCTCATGTCATTACTAT 60.202 40.741 0.00 0.00 0.00 2.12
557 579 6.096987 GGTCTCTGGTTCTCATGTCATTACTA 59.903 42.308 0.00 0.00 0.00 1.82
558 580 5.105146 GGTCTCTGGTTCTCATGTCATTACT 60.105 44.000 0.00 0.00 0.00 2.24
559 581 5.112686 GGTCTCTGGTTCTCATGTCATTAC 58.887 45.833 0.00 0.00 0.00 1.89
560 582 4.777366 TGGTCTCTGGTTCTCATGTCATTA 59.223 41.667 0.00 0.00 0.00 1.90
561 583 3.584406 TGGTCTCTGGTTCTCATGTCATT 59.416 43.478 0.00 0.00 0.00 2.57
562 584 3.176411 TGGTCTCTGGTTCTCATGTCAT 58.824 45.455 0.00 0.00 0.00 3.06
563 585 2.608623 TGGTCTCTGGTTCTCATGTCA 58.391 47.619 0.00 0.00 0.00 3.58
564 586 3.529533 CATGGTCTCTGGTTCTCATGTC 58.470 50.000 0.00 0.00 0.00 3.06
565 587 2.355513 GCATGGTCTCTGGTTCTCATGT 60.356 50.000 0.00 0.00 35.69 3.21
566 588 2.093075 AGCATGGTCTCTGGTTCTCATG 60.093 50.000 0.00 0.00 36.17 3.07
567 589 2.194859 AGCATGGTCTCTGGTTCTCAT 58.805 47.619 0.00 0.00 0.00 2.90
568 590 1.649321 AGCATGGTCTCTGGTTCTCA 58.351 50.000 0.00 0.00 0.00 3.27
569 591 2.777832 AAGCATGGTCTCTGGTTCTC 57.222 50.000 0.00 0.00 28.69 2.87
570 592 3.515602 AAAAGCATGGTCTCTGGTTCT 57.484 42.857 0.00 0.00 33.48 3.01
571 593 3.305608 CCAAAAAGCATGGTCTCTGGTTC 60.306 47.826 0.00 0.00 33.48 3.62
572 594 2.629617 CCAAAAAGCATGGTCTCTGGTT 59.370 45.455 0.00 0.00 35.96 3.67
573 595 2.242043 CCAAAAAGCATGGTCTCTGGT 58.758 47.619 0.00 0.00 33.08 4.00
574 596 1.547372 CCCAAAAAGCATGGTCTCTGG 59.453 52.381 0.00 5.05 36.14 3.86
575 597 1.547372 CCCCAAAAAGCATGGTCTCTG 59.453 52.381 0.00 0.00 36.14 3.35
576 598 1.428912 TCCCCAAAAAGCATGGTCTCT 59.571 47.619 0.00 0.00 36.14 3.10
577 599 1.923356 TCCCCAAAAAGCATGGTCTC 58.077 50.000 0.00 0.00 36.14 3.36
578 600 2.250924 CTTCCCCAAAAAGCATGGTCT 58.749 47.619 0.00 0.00 36.14 3.85
579 601 1.276138 CCTTCCCCAAAAAGCATGGTC 59.724 52.381 0.00 0.00 36.14 4.02
580 602 1.351076 CCTTCCCCAAAAAGCATGGT 58.649 50.000 0.00 0.00 36.14 3.55
581 603 1.002315 CACCTTCCCCAAAAAGCATGG 59.998 52.381 0.00 0.00 37.71 3.66
582 604 1.969923 TCACCTTCCCCAAAAAGCATG 59.030 47.619 0.00 0.00 0.00 4.06
583 605 1.970640 GTCACCTTCCCCAAAAAGCAT 59.029 47.619 0.00 0.00 0.00 3.79
584 606 1.408969 GTCACCTTCCCCAAAAAGCA 58.591 50.000 0.00 0.00 0.00 3.91
585 607 0.313987 CGTCACCTTCCCCAAAAAGC 59.686 55.000 0.00 0.00 0.00 3.51
586 608 0.958822 CCGTCACCTTCCCCAAAAAG 59.041 55.000 0.00 0.00 0.00 2.27
587 609 0.468400 CCCGTCACCTTCCCCAAAAA 60.468 55.000 0.00 0.00 0.00 1.94
588 610 1.151908 CCCGTCACCTTCCCCAAAA 59.848 57.895 0.00 0.00 0.00 2.44
589 611 2.836187 CCCCGTCACCTTCCCCAAA 61.836 63.158 0.00 0.00 0.00 3.28
590 612 3.253838 CCCCGTCACCTTCCCCAA 61.254 66.667 0.00 0.00 0.00 4.12
593 615 4.410400 CTGCCCCGTCACCTTCCC 62.410 72.222 0.00 0.00 0.00 3.97
594 616 3.316573 CTCTGCCCCGTCACCTTCC 62.317 68.421 0.00 0.00 0.00 3.46
595 617 2.266055 CTCTGCCCCGTCACCTTC 59.734 66.667 0.00 0.00 0.00 3.46
596 618 3.322466 CCTCTGCCCCGTCACCTT 61.322 66.667 0.00 0.00 0.00 3.50
597 619 4.316823 TCCTCTGCCCCGTCACCT 62.317 66.667 0.00 0.00 0.00 4.00
598 620 3.775654 CTCCTCTGCCCCGTCACC 61.776 72.222 0.00 0.00 0.00 4.02
599 621 1.043673 ATACTCCTCTGCCCCGTCAC 61.044 60.000 0.00 0.00 0.00 3.67
600 622 0.554305 TATACTCCTCTGCCCCGTCA 59.446 55.000 0.00 0.00 0.00 4.35
601 623 0.960286 GTATACTCCTCTGCCCCGTC 59.040 60.000 0.00 0.00 0.00 4.79
602 624 0.469518 GGTATACTCCTCTGCCCCGT 60.470 60.000 2.25 0.00 0.00 5.28
603 625 0.469331 TGGTATACTCCTCTGCCCCG 60.469 60.000 2.25 0.00 0.00 5.73
604 626 1.802553 TTGGTATACTCCTCTGCCCC 58.197 55.000 2.25 0.00 0.00 5.80
605 627 2.485657 GCTTTGGTATACTCCTCTGCCC 60.486 54.545 2.25 0.00 0.00 5.36
606 628 2.436173 AGCTTTGGTATACTCCTCTGCC 59.564 50.000 2.25 0.00 0.00 4.85
607 629 3.133003 TGAGCTTTGGTATACTCCTCTGC 59.867 47.826 2.25 1.16 0.00 4.26
608 630 4.646945 TCTGAGCTTTGGTATACTCCTCTG 59.353 45.833 2.25 6.21 0.00 3.35
609 631 4.873010 TCTGAGCTTTGGTATACTCCTCT 58.127 43.478 2.25 0.00 0.00 3.69
610 632 4.890581 TCTCTGAGCTTTGGTATACTCCTC 59.109 45.833 2.25 3.07 0.00 3.71
611 633 4.873010 TCTCTGAGCTTTGGTATACTCCT 58.127 43.478 2.25 0.00 0.00 3.69
612 634 5.303078 TCATCTCTGAGCTTTGGTATACTCC 59.697 44.000 2.25 0.00 0.00 3.85
613 635 6.212955 GTCATCTCTGAGCTTTGGTATACTC 58.787 44.000 2.25 0.00 30.18 2.59
614 636 5.221145 CGTCATCTCTGAGCTTTGGTATACT 60.221 44.000 2.25 0.00 30.18 2.12
615 637 4.979197 CGTCATCTCTGAGCTTTGGTATAC 59.021 45.833 0.00 0.00 30.18 1.47
616 638 4.645136 ACGTCATCTCTGAGCTTTGGTATA 59.355 41.667 0.00 0.00 30.18 1.47
617 639 3.449018 ACGTCATCTCTGAGCTTTGGTAT 59.551 43.478 0.00 0.00 30.18 2.73
618 640 2.826128 ACGTCATCTCTGAGCTTTGGTA 59.174 45.455 0.00 0.00 30.18 3.25
619 641 1.620819 ACGTCATCTCTGAGCTTTGGT 59.379 47.619 0.00 0.00 30.18 3.67
620 642 2.266554 GACGTCATCTCTGAGCTTTGG 58.733 52.381 11.55 0.00 30.18 3.28
621 643 1.916651 CGACGTCATCTCTGAGCTTTG 59.083 52.381 17.16 0.00 30.18 2.77
622 644 1.135257 CCGACGTCATCTCTGAGCTTT 60.135 52.381 17.16 0.00 30.18 3.51
623 645 0.453793 CCGACGTCATCTCTGAGCTT 59.546 55.000 17.16 0.00 30.18 3.74
624 646 0.678366 ACCGACGTCATCTCTGAGCT 60.678 55.000 17.16 0.00 30.18 4.09
625 647 0.248296 GACCGACGTCATCTCTGAGC 60.248 60.000 17.16 0.00 38.99 4.26
626 648 1.087501 TGACCGACGTCATCTCTGAG 58.912 55.000 17.16 0.00 44.20 3.35
627 649 3.243128 TGACCGACGTCATCTCTGA 57.757 52.632 17.16 0.00 44.20 3.27
634 656 1.668793 TCGCTACTGACCGACGTCA 60.669 57.895 17.16 0.00 46.91 4.35
635 657 1.225963 GTCGCTACTGACCGACGTC 60.226 63.158 5.18 5.18 43.37 4.34
636 658 2.866028 GTCGCTACTGACCGACGT 59.134 61.111 0.00 0.00 43.37 4.34
639 661 0.386352 CAAACGTCGCTACTGACCGA 60.386 55.000 0.00 0.00 35.40 4.69
640 662 1.941476 GCAAACGTCGCTACTGACCG 61.941 60.000 2.82 0.00 35.40 4.79
641 663 1.623973 GGCAAACGTCGCTACTGACC 61.624 60.000 9.49 0.00 35.40 4.02
642 664 1.779683 GGCAAACGTCGCTACTGAC 59.220 57.895 9.49 0.00 35.49 3.51
643 665 1.731613 CGGCAAACGTCGCTACTGA 60.732 57.895 9.49 0.00 37.93 3.41
644 666 2.769617 CGGCAAACGTCGCTACTG 59.230 61.111 9.49 0.00 37.93 2.74
667 689 2.100252 TGATACCGATCGAGGACAAACC 59.900 50.000 18.66 0.00 34.49 3.27
681 703 4.480541 CTTAGCTAGCACAGATGATACCG 58.519 47.826 18.83 0.00 0.00 4.02
742 772 6.592994 CCGCTATTATGTTGATGATGACTGAT 59.407 38.462 0.00 0.00 0.00 2.90
745 775 5.928839 GTCCGCTATTATGTTGATGATGACT 59.071 40.000 0.00 0.00 0.00 3.41
764 797 2.968675 ACCACTATAGTGTTTGTCCGC 58.031 47.619 27.07 0.00 44.21 5.54
786 819 6.346919 CGAGGTCACTACAAGATTTTCAGTTG 60.347 42.308 0.00 0.00 0.00 3.16
813 850 0.537188 ATGGCGAGGTGACGAGATTT 59.463 50.000 0.00 0.00 35.09 2.17
938 975 1.006832 ACTGATACGTTTGGCGATGC 58.993 50.000 0.00 0.00 44.77 3.91
951 988 5.882040 AGGAGAGATGGTTCGATACTGATA 58.118 41.667 0.00 0.00 0.00 2.15
986 1023 4.517934 CCATCCCCTGCTGCCCTG 62.518 72.222 0.00 0.00 0.00 4.45
1324 1373 2.102109 TAGTTCGGTGCGAGGCCAAA 62.102 55.000 5.01 0.00 37.14 3.28
1420 1469 1.617947 GGGTGGCAGAAGTCGGAGAT 61.618 60.000 0.00 0.00 40.67 2.75
1501 6012 0.621571 TGGCATAGGAGGCAGAAGGT 60.622 55.000 0.00 0.00 39.34 3.50
1515 6026 2.029288 CTCGACGTTGTGCTGGCAT 61.029 57.895 1.96 0.00 0.00 4.40
1767 6278 1.340017 CCGATGGTCCACACCTTCATT 60.340 52.381 0.00 0.00 44.02 2.57
2229 6741 3.526534 GGCTAGCTTCTCGTTCAAGAAT 58.473 45.455 15.72 0.00 34.85 2.40
2322 6834 2.205462 ACCTCTCTGCCCACCACT 59.795 61.111 0.00 0.00 0.00 4.00
2331 6843 2.664081 GGCCTCCACCACCTCTCTG 61.664 68.421 0.00 0.00 0.00 3.35
2407 6919 1.608717 GCCTTCTCCGAGAGAGCCAA 61.609 60.000 9.54 0.00 42.90 4.52
2513 7025 2.046023 CATCCTTCTGCACGGCCA 60.046 61.111 2.24 0.00 0.00 5.36
2529 7041 3.189495 TCTGGCGAAATTCATTTTACGCA 59.811 39.130 15.91 5.90 41.45 5.24
2603 7117 8.265055 TGACTTTTCTTGAGTCTTCCTTCTTAA 58.735 33.333 5.92 0.00 43.07 1.85
2610 7124 3.500299 GCCTGACTTTTCTTGAGTCTTCC 59.500 47.826 5.92 0.00 43.07 3.46
2615 7129 4.526970 TCAAAGCCTGACTTTTCTTGAGT 58.473 39.130 0.00 0.00 46.73 3.41
2798 7316 2.227388 GGAAGACTCCGTCGACTACAAA 59.773 50.000 14.70 0.00 37.67 2.83
2820 7338 3.700038 GCTCTACTGGGTTAAGCTCACTA 59.300 47.826 4.41 0.00 0.00 2.74
2826 7344 3.408634 TGTTTGCTCTACTGGGTTAAGC 58.591 45.455 0.00 0.00 0.00 3.09
2832 7350 3.706594 TCCTCTATGTTTGCTCTACTGGG 59.293 47.826 0.00 0.00 0.00 4.45
2848 7366 1.475403 CTCAGCCCGAAGTTCCTCTA 58.525 55.000 0.00 0.00 0.00 2.43
2875 7395 1.502231 GCACGGTTCATCGATGCTAT 58.498 50.000 20.81 1.32 35.74 2.97
3045 7585 4.578898 TGCAACGGCGTGTCGAGT 62.579 61.111 15.70 0.00 45.35 4.18
3092 7632 2.100087 TCGTGCTTGTAACAGTGAGTCA 59.900 45.455 0.00 0.00 0.00 3.41
3094 7634 2.882927 TCGTGCTTGTAACAGTGAGT 57.117 45.000 0.00 0.00 0.00 3.41
3126 7666 0.107456 CAGTGACTGCTCCCTTGTGT 59.893 55.000 0.00 0.00 0.00 3.72
3217 7761 0.247736 GGACACAGAGCTGATTCCGT 59.752 55.000 4.21 0.00 0.00 4.69
3230 7775 1.977854 AGATGTGGTAGCAAGGACACA 59.022 47.619 0.00 0.00 46.44 3.72
3245 7790 6.296026 TCTTTTGTTGGTAGTAGCAAGATGT 58.704 36.000 14.88 0.00 36.14 3.06
3258 7803 1.145119 GGGGTCCTCTCTTTTGTTGGT 59.855 52.381 0.00 0.00 0.00 3.67
3334 7881 6.462909 GGTCCACATTCCTTTTGAATTGTTCT 60.463 38.462 0.00 0.00 41.85 3.01
3354 7903 8.749026 TGTGTTTGTAAATTAGTTTAGGTCCA 57.251 30.769 0.00 0.00 30.76 4.02
3370 7919 1.301423 GGCGTGGTTCTGTGTTTGTA 58.699 50.000 0.00 0.00 0.00 2.41
3372 7921 1.358759 GGGCGTGGTTCTGTGTTTG 59.641 57.895 0.00 0.00 0.00 2.93
3378 7927 1.595093 GGATTTGGGGCGTGGTTCTG 61.595 60.000 0.00 0.00 0.00 3.02
3439 7989 0.910088 AAGGTGGGAGAGTGTAGGGC 60.910 60.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.