Multiple sequence alignment - TraesCS7B01G075000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G075000 chr7B 100.000 4970 0 0 1 4970 84520277 84525246 0.000000e+00 9178.0
1 TraesCS7B01G075000 chr7B 88.942 1664 126 30 2377 4004 84564782 84566423 0.000000e+00 2001.0
2 TraesCS7B01G075000 chr7B 87.865 651 36 19 695 1308 84562812 84563456 0.000000e+00 725.0
3 TraesCS7B01G075000 chr7B 86.645 629 73 3 2763 3381 84635649 84636276 0.000000e+00 686.0
4 TraesCS7B01G075000 chr7B 92.974 427 29 1 3549 3975 84636437 84636862 5.460000e-174 621.0
5 TraesCS7B01G075000 chr7B 87.671 219 21 3 2000 2216 84635027 84635241 2.970000e-62 250.0
6 TraesCS7B01G075000 chr7B 82.824 262 21 10 1707 1968 84564175 84564412 3.900000e-51 213.0
7 TraesCS7B01G075000 chr7B 85.922 206 19 6 2000 2198 84564405 84564607 1.400000e-50 211.0
8 TraesCS7B01G075000 chr7B 83.889 180 17 6 1799 1972 84634865 84635038 1.430000e-35 161.0
9 TraesCS7B01G075000 chr7B 94.937 79 3 1 606 683 84562437 84562515 6.760000e-24 122.0
10 TraesCS7B01G075000 chr7D 90.412 1627 103 14 2377 3975 123382314 123383915 0.000000e+00 2091.0
11 TraesCS7B01G075000 chr7D 91.165 1562 100 20 2434 3975 123324685 123326228 0.000000e+00 2085.0
12 TraesCS7B01G075000 chr7D 88.216 908 54 21 444 1308 123322741 123323638 0.000000e+00 1035.0
13 TraesCS7B01G075000 chr7D 85.680 412 51 3 1 405 123322329 123322739 1.280000e-115 427.0
14 TraesCS7B01G075000 chr7D 79.070 430 41 26 1562 1976 123323899 123324294 2.970000e-62 250.0
15 TraesCS7B01G075000 chr7D 91.765 170 12 2 2215 2382 192936020 192936189 8.320000e-58 235.0
16 TraesCS7B01G075000 chr7D 92.169 166 12 1 2215 2379 517575235 517575400 2.990000e-57 233.0
17 TraesCS7B01G075000 chr7D 87.805 123 13 2 2079 2201 123376213 123376333 5.190000e-30 143.0
18 TraesCS7B01G075000 chr7A 92.065 1235 91 5 2765 3997 126142801 126144030 0.000000e+00 1731.0
19 TraesCS7B01G075000 chr7A 87.786 1310 120 25 2696 3975 126177778 126179077 0.000000e+00 1496.0
20 TraesCS7B01G075000 chr7A 86.585 902 69 30 440 1308 126175710 126176592 0.000000e+00 948.0
21 TraesCS7B01G075000 chr7A 88.221 416 34 11 1562 1972 126176836 126177241 2.690000e-132 483.0
22 TraesCS7B01G075000 chr7A 84.272 426 36 16 1558 1976 126141682 126142083 2.170000e-103 387.0
23 TraesCS7B01G075000 chr7A 87.320 347 28 7 1037 1372 126140045 126140386 2.810000e-102 383.0
24 TraesCS7B01G075000 chr7A 90.521 211 18 1 2000 2210 126142068 126142276 1.360000e-70 278.0
25 TraesCS7B01G075000 chr7A 92.405 158 12 0 2000 2157 126177230 126177387 5.010000e-55 226.0
26 TraesCS7B01G075000 chr6B 97.835 970 21 0 4001 4970 88881962 88882931 0.000000e+00 1676.0
27 TraesCS7B01G075000 chr6B 74.534 644 114 32 3096 3702 634308442 634309072 8.320000e-58 235.0
28 TraesCS7B01G075000 chr6B 90.751 173 14 2 2208 2379 141792649 141792820 3.870000e-56 230.0
29 TraesCS7B01G075000 chr6B 79.654 231 45 2 3718 3947 634309435 634309664 1.110000e-36 165.0
30 TraesCS7B01G075000 chr6A 96.914 972 28 1 4001 4970 532850141 532851112 0.000000e+00 1628.0
31 TraesCS7B01G075000 chr6A 79.292 367 64 11 1 363 452304345 452304703 3.840000e-61 246.0
32 TraesCS7B01G075000 chr6A 80.519 231 43 2 3718 3947 564097603 564097832 5.110000e-40 176.0
33 TraesCS7B01G075000 chr6A 76.489 319 66 8 48 362 615891285 615890972 1.110000e-36 165.0
34 TraesCS7B01G075000 chr3A 96.605 972 31 1 4001 4970 681103861 681102890 0.000000e+00 1611.0
35 TraesCS7B01G075000 chr3A 98.413 63 1 0 1888 1950 593038296 593038358 1.460000e-20 111.0
36 TraesCS7B01G075000 chr3B 95.984 971 38 1 4001 4970 21805274 21804304 0.000000e+00 1576.0
37 TraesCS7B01G075000 chr3B 76.648 364 71 11 1 362 577529761 577529410 6.570000e-44 189.0
38 TraesCS7B01G075000 chr2B 95.984 971 38 1 4001 4970 775663823 775664793 0.000000e+00 1576.0
39 TraesCS7B01G075000 chr2B 95.778 971 39 2 4001 4970 775732712 775733681 0.000000e+00 1565.0
40 TraesCS7B01G075000 chr2B 96.242 958 19 3 4015 4970 137906816 137905874 0.000000e+00 1554.0
41 TraesCS7B01G075000 chr2B 96.028 856 17 3 4001 4854 137908175 137909015 0.000000e+00 1376.0
42 TraesCS7B01G075000 chr2B 91.617 167 13 1 2215 2380 404425751 404425917 3.870000e-56 230.0
43 TraesCS7B01G075000 chr2B 76.139 373 74 12 7 375 87518899 87518538 1.100000e-41 182.0
44 TraesCS7B01G075000 chrUn 95.675 971 41 1 4001 4970 258650302 258651272 0.000000e+00 1559.0
45 TraesCS7B01G075000 chrUn 95.572 971 42 1 4001 4970 178822670 178823640 0.000000e+00 1554.0
46 TraesCS7B01G075000 chrUn 97.668 386 9 0 3542 3927 480568364 480567979 0.000000e+00 664.0
47 TraesCS7B01G075000 chr6D 74.574 645 114 29 3095 3702 420894513 420895144 2.310000e-58 237.0
48 TraesCS7B01G075000 chr6D 78.747 367 67 10 1 363 315365899 315366258 8.320000e-58 235.0
49 TraesCS7B01G075000 chr6D 92.169 166 12 1 2215 2379 97856584 97856419 2.990000e-57 233.0
50 TraesCS7B01G075000 chr2D 92.727 165 11 1 2215 2378 647970257 647970093 2.310000e-58 237.0
51 TraesCS7B01G075000 chr5A 90.805 174 13 3 2208 2378 309687469 309687642 3.870000e-56 230.0
52 TraesCS7B01G075000 chr5A 77.739 283 54 7 98 377 653938808 653939084 1.110000e-36 165.0
53 TraesCS7B01G075000 chr3D 89.944 179 16 2 2215 2391 302983055 302983233 3.870000e-56 230.0
54 TraesCS7B01G075000 chr5B 89.831 177 17 1 2211 2386 27817177 27817001 5.010000e-55 226.0
55 TraesCS7B01G075000 chr4D 77.576 330 67 5 12 339 506288126 506288450 5.080000e-45 193.0
56 TraesCS7B01G075000 chr1A 77.536 276 51 8 65 338 463492831 463492565 6.660000e-34 156.0
57 TraesCS7B01G075000 chr2A 74.702 336 68 12 5 338 713218728 713219048 3.120000e-27 134.0
58 TraesCS7B01G075000 chr1D 81.081 74 14 0 1 74 453568628 453568555 5.370000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G075000 chr7B 84520277 84525246 4969 False 9178.00 9178 100.00000 1 4970 1 chr7B.!!$F1 4969
1 TraesCS7B01G075000 chr7B 84562437 84566423 3986 False 654.40 2001 88.09800 606 4004 5 chr7B.!!$F2 3398
2 TraesCS7B01G075000 chr7B 84634865 84636862 1997 False 429.50 686 87.79475 1799 3975 4 chr7B.!!$F3 2176
3 TraesCS7B01G075000 chr7D 123382314 123383915 1601 False 2091.00 2091 90.41200 2377 3975 1 chr7D.!!$F2 1598
4 TraesCS7B01G075000 chr7D 123322329 123326228 3899 False 949.25 2085 86.03275 1 3975 4 chr7D.!!$F5 3974
5 TraesCS7B01G075000 chr7A 126175710 126179077 3367 False 788.25 1496 88.74925 440 3975 4 chr7A.!!$F2 3535
6 TraesCS7B01G075000 chr7A 126140045 126144030 3985 False 694.75 1731 88.54450 1037 3997 4 chr7A.!!$F1 2960
7 TraesCS7B01G075000 chr6B 88881962 88882931 969 False 1676.00 1676 97.83500 4001 4970 1 chr6B.!!$F1 969
8 TraesCS7B01G075000 chr6A 532850141 532851112 971 False 1628.00 1628 96.91400 4001 4970 1 chr6A.!!$F2 969
9 TraesCS7B01G075000 chr3A 681102890 681103861 971 True 1611.00 1611 96.60500 4001 4970 1 chr3A.!!$R1 969
10 TraesCS7B01G075000 chr3B 21804304 21805274 970 True 1576.00 1576 95.98400 4001 4970 1 chr3B.!!$R1 969
11 TraesCS7B01G075000 chr2B 775663823 775664793 970 False 1576.00 1576 95.98400 4001 4970 1 chr2B.!!$F3 969
12 TraesCS7B01G075000 chr2B 775732712 775733681 969 False 1565.00 1565 95.77800 4001 4970 1 chr2B.!!$F4 969
13 TraesCS7B01G075000 chr2B 137905874 137906816 942 True 1554.00 1554 96.24200 4015 4970 1 chr2B.!!$R2 955
14 TraesCS7B01G075000 chr2B 137908175 137909015 840 False 1376.00 1376 96.02800 4001 4854 1 chr2B.!!$F1 853
15 TraesCS7B01G075000 chrUn 258650302 258651272 970 False 1559.00 1559 95.67500 4001 4970 1 chrUn.!!$F2 969
16 TraesCS7B01G075000 chrUn 178822670 178823640 970 False 1554.00 1554 95.57200 4001 4970 1 chrUn.!!$F1 969
17 TraesCS7B01G075000 chr6D 420894513 420895144 631 False 237.00 237 74.57400 3095 3702 1 chr6D.!!$F2 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1289 0.363512 CGTTCTGCTGTTCATCGTCG 59.636 55.0 0.00 0.0 0.00 5.12 F
1882 3683 0.035534 TTTGGATAGCAGCCTTCGCA 60.036 50.0 0.00 0.0 37.52 5.10 F
2146 3959 0.179018 AGCTTGACCGCTTTCCTGTT 60.179 50.0 0.00 0.0 36.74 3.16 F
2928 5351 0.095935 TAGCGTACGAGAACGAGCAC 59.904 55.0 21.65 0.0 45.68 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2860 5283 0.107654 AGGTAACCGCCATTCTCAGC 60.108 55.000 0.00 0.0 37.17 4.26 R
2862 5285 0.174845 CGAGGTAACCGCCATTCTCA 59.825 55.000 0.00 0.0 37.17 3.27 R
3183 5639 1.061253 CGCGTCAAACGGTTGTGTT 59.939 52.632 13.90 0.0 42.82 3.32 R
4050 6577 1.269723 CAAGACAGTCACCTCGTGCTA 59.730 52.381 2.66 0.0 32.98 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.021968 GCGTGTGGAGGTTTGTTTCT 58.978 50.000 0.00 0.00 0.00 2.52
31 32 1.333619 CGTGTGGAGGTTTGTTTCTGG 59.666 52.381 0.00 0.00 0.00 3.86
33 34 1.341482 TGTGGAGGTTTGTTTCTGGCA 60.341 47.619 0.00 0.00 0.00 4.92
34 35 1.754226 GTGGAGGTTTGTTTCTGGCAA 59.246 47.619 0.00 0.00 0.00 4.52
56 57 1.153568 TCGCAAGATTCTGCCGGAG 60.154 57.895 5.05 0.00 45.01 4.63
65 66 2.341846 TTCTGCCGGAGTTTGTCTTT 57.658 45.000 5.05 0.00 0.00 2.52
66 67 1.593196 TCTGCCGGAGTTTGTCTTTG 58.407 50.000 5.05 0.00 0.00 2.77
75 76 3.503748 GGAGTTTGTCTTTGGTGGATCTG 59.496 47.826 0.00 0.00 0.00 2.90
81 82 1.202915 TCTTTGGTGGATCTGCTTGCA 60.203 47.619 0.00 0.00 0.00 4.08
82 83 0.961019 TTTGGTGGATCTGCTTGCAC 59.039 50.000 0.00 0.00 37.24 4.57
84 85 3.595819 GTGGATCTGCTTGCACCC 58.404 61.111 0.00 0.00 32.35 4.61
93 94 2.919494 GCTTGCACCCGGTCTTTGG 61.919 63.158 0.00 0.00 0.00 3.28
94 95 2.909965 TTGCACCCGGTCTTTGGC 60.910 61.111 0.00 0.00 0.00 4.52
101 102 3.423154 CGGTCTTTGGCCGTCTGC 61.423 66.667 0.00 0.00 43.84 4.26
104 105 2.110213 TCTTTGGCCGTCTGCGTT 59.890 55.556 0.00 0.00 42.61 4.84
105 106 1.525077 TCTTTGGCCGTCTGCGTTT 60.525 52.632 0.00 0.00 42.61 3.60
137 138 5.501156 ACAGGTTGGATCCTTTCAATCTAC 58.499 41.667 14.23 0.00 33.10 2.59
152 153 5.965922 TCAATCTACGCTTCTCTTCATCAA 58.034 37.500 0.00 0.00 0.00 2.57
153 154 6.398095 TCAATCTACGCTTCTCTTCATCAAA 58.602 36.000 0.00 0.00 0.00 2.69
156 157 6.214191 TCTACGCTTCTCTTCATCAAAGAT 57.786 37.500 0.00 0.00 43.06 2.40
157 158 7.334844 TCTACGCTTCTCTTCATCAAAGATA 57.665 36.000 0.00 0.00 43.06 1.98
197 199 0.687354 ATCCTATGGTGCCGCCTTAG 59.313 55.000 9.64 9.64 41.90 2.18
213 215 3.623060 GCCTTAGCACAATGATTTCTCGA 59.377 43.478 0.00 0.00 39.53 4.04
214 216 4.494855 GCCTTAGCACAATGATTTCTCGAC 60.495 45.833 0.00 0.00 39.53 4.20
215 217 4.631377 CCTTAGCACAATGATTTCTCGACA 59.369 41.667 0.00 0.00 0.00 4.35
223 225 7.413438 GCACAATGATTTCTCGACAGTCTAAAT 60.413 37.037 0.00 2.50 0.00 1.40
237 239 7.466860 CGACAGTCTAAATAATAAGGTTTGCCC 60.467 40.741 0.00 0.00 34.57 5.36
303 305 1.270147 ACTCCGGTGCTTGTAGTTGTC 60.270 52.381 0.00 0.00 0.00 3.18
304 306 0.753867 TCCGGTGCTTGTAGTTGTCA 59.246 50.000 0.00 0.00 0.00 3.58
306 308 2.151202 CCGGTGCTTGTAGTTGTCATT 58.849 47.619 0.00 0.00 0.00 2.57
317 319 6.276832 TGTAGTTGTCATTAGGTGGTCTAC 57.723 41.667 0.00 0.00 0.00 2.59
339 341 4.217550 ACGGACCTGGATGTTATGTTTTTG 59.782 41.667 0.00 0.00 0.00 2.44
340 342 4.494484 GGACCTGGATGTTATGTTTTTGC 58.506 43.478 0.00 0.00 0.00 3.68
341 343 4.021544 GGACCTGGATGTTATGTTTTTGCA 60.022 41.667 0.00 0.00 0.00 4.08
342 344 5.510520 GGACCTGGATGTTATGTTTTTGCAA 60.511 40.000 0.00 0.00 0.00 4.08
345 347 5.634859 CCTGGATGTTATGTTTTTGCAACTC 59.365 40.000 0.00 0.00 0.00 3.01
349 351 4.987832 TGTTATGTTTTTGCAACTCGTGT 58.012 34.783 0.00 0.00 0.00 4.49
412 420 6.882768 AAAAACTATCAGATCTCCCTCTGT 57.117 37.500 0.00 0.00 42.68 3.41
413 421 6.478512 AAAACTATCAGATCTCCCTCTGTC 57.521 41.667 0.00 0.00 42.68 3.51
414 422 4.112634 ACTATCAGATCTCCCTCTGTCC 57.887 50.000 0.00 0.00 42.68 4.02
415 423 2.397044 ATCAGATCTCCCTCTGTCCC 57.603 55.000 0.00 0.00 42.68 4.46
416 424 1.010795 TCAGATCTCCCTCTGTCCCA 58.989 55.000 0.00 0.00 42.68 4.37
417 425 1.577729 TCAGATCTCCCTCTGTCCCAT 59.422 52.381 0.00 0.00 42.68 4.00
418 426 2.791774 TCAGATCTCCCTCTGTCCCATA 59.208 50.000 0.00 0.00 42.68 2.74
419 427 3.207549 TCAGATCTCCCTCTGTCCCATAA 59.792 47.826 0.00 0.00 42.68 1.90
420 428 4.140591 TCAGATCTCCCTCTGTCCCATAAT 60.141 45.833 0.00 0.00 42.68 1.28
421 429 5.076458 TCAGATCTCCCTCTGTCCCATAATA 59.924 44.000 0.00 0.00 42.68 0.98
422 430 5.963253 CAGATCTCCCTCTGTCCCATAATAT 59.037 44.000 0.00 0.00 38.27 1.28
423 431 7.035838 TCAGATCTCCCTCTGTCCCATAATATA 60.036 40.741 0.00 0.00 42.68 0.86
424 432 7.621285 CAGATCTCCCTCTGTCCCATAATATAA 59.379 40.741 0.00 0.00 38.27 0.98
425 433 7.621683 AGATCTCCCTCTGTCCCATAATATAAC 59.378 40.741 0.00 0.00 0.00 1.89
426 434 6.875469 TCTCCCTCTGTCCCATAATATAACT 58.125 40.000 0.00 0.00 0.00 2.24
427 435 8.008104 TCTCCCTCTGTCCCATAATATAACTA 57.992 38.462 0.00 0.00 0.00 2.24
428 436 8.116669 TCTCCCTCTGTCCCATAATATAACTAG 58.883 40.741 0.00 0.00 0.00 2.57
429 437 7.776745 TCCCTCTGTCCCATAATATAACTAGT 58.223 38.462 0.00 0.00 0.00 2.57
430 438 7.674348 TCCCTCTGTCCCATAATATAACTAGTG 59.326 40.741 0.00 0.00 0.00 2.74
431 439 7.455008 CCCTCTGTCCCATAATATAACTAGTGT 59.545 40.741 0.00 0.00 0.00 3.55
432 440 9.529823 CCTCTGTCCCATAATATAACTAGTGTA 57.470 37.037 0.00 0.00 0.00 2.90
489 499 0.905357 ACTCGGGGGACAATTCAGAG 59.095 55.000 0.00 0.00 0.00 3.35
501 511 3.072184 ACAATTCAGAGAGGTGACTTGCT 59.928 43.478 4.42 0.00 44.43 3.91
504 514 2.603021 TCAGAGAGGTGACTTGCTTCT 58.397 47.619 0.00 0.00 44.43 2.85
530 549 3.076785 ACTCTCTCTTTCTTCCCTCTCCA 59.923 47.826 0.00 0.00 0.00 3.86
531 550 3.436243 TCTCTCTTTCTTCCCTCTCCAC 58.564 50.000 0.00 0.00 0.00 4.02
557 576 3.467374 TCTATGCCGTATGTCATGCAA 57.533 42.857 0.00 0.00 37.27 4.08
582 602 3.760684 GGAAAATCTGTGCAGAATCAGGT 59.239 43.478 5.95 0.00 41.36 4.00
593 613 3.841643 CAGAATCAGGTAAACCGTACGT 58.158 45.455 15.21 0.00 42.08 3.57
614 634 3.484334 AGAACTAGCGAGTAACCGAAC 57.516 47.619 0.00 0.00 33.58 3.95
653 674 1.071699 TGTAACCGCTCCTTCTTTGCT 59.928 47.619 0.00 0.00 0.00 3.91
716 1027 8.202137 TCTGGTCCTTATAATTAACACAGTAGC 58.798 37.037 0.00 0.00 0.00 3.58
766 1083 1.677052 GCCTAGTGACCTAGTCTTCCG 59.323 57.143 0.00 0.00 39.29 4.30
854 1189 2.225017 GGCTCTATCCTCTACTCAGCCT 60.225 54.545 0.00 0.00 41.54 4.58
927 1262 3.024547 TCCTACACCTTGTGCTAGCTAG 58.975 50.000 16.84 16.84 36.98 3.42
954 1289 0.363512 CGTTCTGCTGTTCATCGTCG 59.636 55.000 0.00 0.00 0.00 5.12
1086 1431 3.699894 CTCCTCCACCTGCTGCGT 61.700 66.667 0.00 0.00 0.00 5.24
1099 1444 4.273257 TGCGTTCCAGCGACGTCA 62.273 61.111 17.16 0.00 42.22 4.35
1164 1518 1.407437 GCAGACCGGTGGATCATCTTT 60.407 52.381 14.63 0.00 0.00 2.52
1171 1525 2.093500 CGGTGGATCATCTTTGTCTCCA 60.093 50.000 0.00 0.00 35.10 3.86
1308 1662 2.164219 CAGAAACGCCATGCAAGGTAAT 59.836 45.455 10.15 0.00 0.00 1.89
1309 1663 3.376859 CAGAAACGCCATGCAAGGTAATA 59.623 43.478 10.15 0.00 0.00 0.98
1310 1664 4.036734 CAGAAACGCCATGCAAGGTAATAT 59.963 41.667 10.15 0.00 0.00 1.28
1314 1668 3.818773 ACGCCATGCAAGGTAATATAACC 59.181 43.478 10.15 0.00 40.06 2.85
1315 1669 3.120338 CGCCATGCAAGGTAATATAACCG 60.120 47.826 10.15 0.00 44.77 4.44
1316 1670 4.069304 GCCATGCAAGGTAATATAACCGA 58.931 43.478 10.15 0.00 44.77 4.69
1318 1672 5.391950 GCCATGCAAGGTAATATAACCGATG 60.392 44.000 10.15 0.00 44.77 3.84
1319 1673 5.123820 CCATGCAAGGTAATATAACCGATGG 59.876 44.000 0.00 0.00 44.77 3.51
1322 1676 7.011499 TGCAAGGTAATATAACCGATGGTAT 57.989 36.000 0.00 0.00 44.77 2.73
1323 1677 7.455058 TGCAAGGTAATATAACCGATGGTATT 58.545 34.615 0.00 0.00 44.77 1.89
1325 1679 9.439500 GCAAGGTAATATAACCGATGGTATTTA 57.561 33.333 0.00 0.00 44.77 1.40
1327 1681 9.662947 AAGGTAATATAACCGATGGTATTTAGC 57.337 33.333 0.00 0.00 44.77 3.09
1328 1682 8.818860 AGGTAATATAACCGATGGTATTTAGCA 58.181 33.333 0.00 0.00 44.77 3.49
1329 1683 9.609346 GGTAATATAACCGATGGTATTTAGCAT 57.391 33.333 2.08 2.08 46.05 3.79
1332 1686 9.733556 AATATAACCGATGGTATTTAGCATTCA 57.266 29.630 3.97 0.00 43.71 2.57
1333 1687 7.672983 ATAACCGATGGTATTTAGCATTCAG 57.327 36.000 3.97 0.20 43.71 3.02
1335 1689 5.680619 ACCGATGGTATTTAGCATTCAGAA 58.319 37.500 3.97 0.00 43.71 3.02
1336 1690 6.299141 ACCGATGGTATTTAGCATTCAGAAT 58.701 36.000 3.97 0.00 43.71 2.40
1340 1694 9.979270 CGATGGTATTTAGCATTCAGAATTATC 57.021 33.333 3.97 0.00 43.71 1.75
1341 1695 9.979270 GATGGTATTTAGCATTCAGAATTATCG 57.021 33.333 3.97 0.00 43.71 2.92
1342 1696 8.322906 TGGTATTTAGCATTCAGAATTATCGG 57.677 34.615 0.00 0.00 0.00 4.18
1343 1697 7.936847 TGGTATTTAGCATTCAGAATTATCGGT 59.063 33.333 0.00 0.00 0.00 4.69
1347 1701 8.725405 TTTAGCATTCAGAATTATCGGTTGTA 57.275 30.769 0.00 0.00 0.00 2.41
1420 1800 3.932545 AAAATATGTTCCTGCACGCAA 57.067 38.095 0.00 0.00 0.00 4.85
1422 1802 1.382522 ATATGTTCCTGCACGCAAGG 58.617 50.000 0.00 0.00 46.39 3.61
1423 1803 1.305219 TATGTTCCTGCACGCAAGGC 61.305 55.000 0.00 0.00 46.39 4.35
1424 1804 2.980233 GTTCCTGCACGCAAGGCT 60.980 61.111 0.00 0.00 46.39 4.58
1425 1805 2.203337 TTCCTGCACGCAAGGCTT 60.203 55.556 0.00 0.00 46.39 4.35
1426 1806 2.260869 TTCCTGCACGCAAGGCTTC 61.261 57.895 0.00 0.00 46.39 3.86
1427 1807 3.741476 CCTGCACGCAAGGCTTCC 61.741 66.667 0.00 0.00 46.39 3.46
1428 1808 2.979676 CTGCACGCAAGGCTTCCA 60.980 61.111 0.00 0.00 46.39 3.53
1433 1843 1.737838 CACGCAAGGCTTCCATCTTA 58.262 50.000 0.00 0.00 46.39 2.10
1464 1874 4.883585 TCTTGCATATGAAAGTGGGACATC 59.116 41.667 20.79 0.00 44.52 3.06
1469 1879 5.430886 CATATGAAAGTGGGACATCAGTCA 58.569 41.667 0.00 0.00 46.80 3.41
1470 1880 4.581309 ATGAAAGTGGGACATCAGTCAT 57.419 40.909 0.00 0.00 46.80 3.06
1471 1881 3.678289 TGAAAGTGGGACATCAGTCATG 58.322 45.455 0.00 0.00 46.80 3.07
1472 1882 2.119801 AAGTGGGACATCAGTCATGC 57.880 50.000 0.00 0.00 46.80 4.06
1488 1898 1.647545 ATGCATCCACGGCGAAACAG 61.648 55.000 16.62 0.96 0.00 3.16
1493 1903 2.317609 CCACGGCGAAACAGACAGG 61.318 63.158 16.62 0.00 0.00 4.00
1500 1910 0.895530 CGAAACAGACAGGGCTCCTA 59.104 55.000 0.00 0.00 29.64 2.94
1502 1912 0.615850 AAACAGACAGGGCTCCTAGC 59.384 55.000 0.00 0.00 41.46 3.42
1503 1913 0.252467 AACAGACAGGGCTCCTAGCT 60.252 55.000 0.00 0.00 41.99 3.32
1512 1922 1.202794 GGGCTCCTAGCTAGTAGTCGT 60.203 57.143 19.31 0.00 41.99 4.34
1562 1976 4.770010 CCAAGTATAACCAACACCAACCAT 59.230 41.667 0.00 0.00 0.00 3.55
1563 1977 5.946972 CCAAGTATAACCAACACCAACCATA 59.053 40.000 0.00 0.00 0.00 2.74
1567 1981 8.658840 AGTATAACCAACACCAACCATAAAAT 57.341 30.769 0.00 0.00 0.00 1.82
1637 3119 7.221450 TGTGCAACTTATATGTAACTATCCCC 58.779 38.462 0.00 0.00 38.04 4.81
1639 3121 7.937394 GTGCAACTTATATGTAACTATCCCCTT 59.063 37.037 0.00 0.00 0.00 3.95
1755 3553 0.106335 AGATGGGAGATCAGCAAGCG 59.894 55.000 0.00 0.00 0.00 4.68
1756 3554 1.505477 GATGGGAGATCAGCAAGCGC 61.505 60.000 0.00 0.00 38.99 5.92
1789 3587 4.134563 GTTGTTCTTGCTAGGAAACAGGA 58.865 43.478 0.00 0.00 0.00 3.86
1808 3607 9.708092 AAACAGGAGTTTACTGATTAAGTAGAC 57.292 33.333 0.00 0.00 45.71 2.59
1879 3680 1.755179 TGCTTTGGATAGCAGCCTTC 58.245 50.000 0.00 0.00 45.72 3.46
1882 3683 0.035534 TTTGGATAGCAGCCTTCGCA 60.036 50.000 0.00 0.00 37.52 5.10
1891 3696 1.202188 GCAGCCTTCGCAGTTTAATCC 60.202 52.381 0.00 0.00 37.52 3.01
1969 3774 6.016192 CACTTGTACTCTGGTCAGAACTTAGA 60.016 42.308 2.13 0.00 36.94 2.10
1970 3775 6.550108 ACTTGTACTCTGGTCAGAACTTAGAA 59.450 38.462 2.13 0.00 36.94 2.10
1971 3776 7.233757 ACTTGTACTCTGGTCAGAACTTAGAAT 59.766 37.037 2.13 0.00 36.94 2.40
1972 3777 7.540474 TGTACTCTGGTCAGAACTTAGAATT 57.460 36.000 2.13 0.00 36.94 2.17
1973 3778 7.603651 TGTACTCTGGTCAGAACTTAGAATTC 58.396 38.462 0.00 0.00 36.94 2.17
1974 3779 6.672266 ACTCTGGTCAGAACTTAGAATTCA 57.328 37.500 8.44 0.00 36.94 2.57
1975 3780 7.251321 ACTCTGGTCAGAACTTAGAATTCAT 57.749 36.000 8.44 0.00 36.94 2.57
1976 3781 7.327214 ACTCTGGTCAGAACTTAGAATTCATC 58.673 38.462 8.44 0.00 36.94 2.92
1977 3782 7.038729 ACTCTGGTCAGAACTTAGAATTCATCA 60.039 37.037 8.44 0.00 36.94 3.07
1978 3783 7.099764 TCTGGTCAGAACTTAGAATTCATCAC 58.900 38.462 8.44 0.00 33.91 3.06
1979 3784 6.173339 TGGTCAGAACTTAGAATTCATCACC 58.827 40.000 8.44 3.78 0.00 4.02
1980 3785 5.586643 GGTCAGAACTTAGAATTCATCACCC 59.413 44.000 8.44 0.00 0.00 4.61
1981 3786 5.292101 GTCAGAACTTAGAATTCATCACCCG 59.708 44.000 8.44 0.00 0.00 5.28
1982 3787 4.034510 CAGAACTTAGAATTCATCACCCGC 59.965 45.833 8.44 0.00 0.00 6.13
1983 3788 3.627395 ACTTAGAATTCATCACCCGCA 57.373 42.857 8.44 0.00 0.00 5.69
1984 3789 3.950397 ACTTAGAATTCATCACCCGCAA 58.050 40.909 8.44 0.00 0.00 4.85
1985 3790 4.331968 ACTTAGAATTCATCACCCGCAAA 58.668 39.130 8.44 0.00 0.00 3.68
1986 3791 4.764823 ACTTAGAATTCATCACCCGCAAAA 59.235 37.500 8.44 0.00 0.00 2.44
1987 3792 5.242838 ACTTAGAATTCATCACCCGCAAAAA 59.757 36.000 8.44 0.00 0.00 1.94
2087 3900 5.357596 TGTTAACTTGTTAAGGTGGTTGTCC 59.642 40.000 7.22 0.00 0.00 4.02
2146 3959 0.179018 AGCTTGACCGCTTTCCTGTT 60.179 50.000 0.00 0.00 36.74 3.16
2159 3972 2.034687 CTGTTGGAGGCCCCACTG 59.965 66.667 12.07 8.26 46.62 3.66
2162 3975 2.449518 TTGGAGGCCCCACTGACA 60.450 61.111 12.07 0.00 46.62 3.58
2163 3976 2.829384 TTGGAGGCCCCACTGACAC 61.829 63.158 12.07 0.00 46.62 3.67
2176 3989 3.708631 CCACTGACACTCTAATCATCCCT 59.291 47.826 0.00 0.00 0.00 4.20
2219 4196 9.774742 CATTACTGAATAGCTTTGTTTTACTCC 57.225 33.333 0.00 0.00 0.00 3.85
2220 4197 6.819397 ACTGAATAGCTTTGTTTTACTCCC 57.181 37.500 0.00 0.00 0.00 4.30
2221 4198 6.543735 ACTGAATAGCTTTGTTTTACTCCCT 58.456 36.000 0.00 0.00 0.00 4.20
2222 4199 6.655425 ACTGAATAGCTTTGTTTTACTCCCTC 59.345 38.462 0.00 0.00 0.00 4.30
2223 4200 5.944007 TGAATAGCTTTGTTTTACTCCCTCC 59.056 40.000 0.00 0.00 0.00 4.30
2224 4201 2.779506 AGCTTTGTTTTACTCCCTCCG 58.220 47.619 0.00 0.00 0.00 4.63
2225 4202 2.105993 AGCTTTGTTTTACTCCCTCCGT 59.894 45.455 0.00 0.00 0.00 4.69
2226 4203 2.882761 GCTTTGTTTTACTCCCTCCGTT 59.117 45.455 0.00 0.00 0.00 4.44
2227 4204 4.067192 GCTTTGTTTTACTCCCTCCGTTA 58.933 43.478 0.00 0.00 0.00 3.18
2228 4205 4.083643 GCTTTGTTTTACTCCCTCCGTTAC 60.084 45.833 0.00 0.00 0.00 2.50
2229 4206 4.961438 TTGTTTTACTCCCTCCGTTACT 57.039 40.909 0.00 0.00 0.00 2.24
2230 4207 6.418057 TTTGTTTTACTCCCTCCGTTACTA 57.582 37.500 0.00 0.00 0.00 1.82
2231 4208 6.418057 TTGTTTTACTCCCTCCGTTACTAA 57.582 37.500 0.00 0.00 0.00 2.24
2232 4209 6.418057 TGTTTTACTCCCTCCGTTACTAAA 57.582 37.500 0.00 0.00 0.00 1.85
2233 4210 7.008021 TGTTTTACTCCCTCCGTTACTAAAT 57.992 36.000 0.00 0.00 0.00 1.40
2234 4211 8.133024 TGTTTTACTCCCTCCGTTACTAAATA 57.867 34.615 0.00 0.00 0.00 1.40
2235 4212 8.761689 TGTTTTACTCCCTCCGTTACTAAATAT 58.238 33.333 0.00 0.00 0.00 1.28
2236 4213 9.605275 GTTTTACTCCCTCCGTTACTAAATATT 57.395 33.333 0.00 0.00 0.00 1.28
2238 4215 9.603921 TTTACTCCCTCCGTTACTAAATATTTG 57.396 33.333 11.05 3.88 0.00 2.32
2239 4216 7.191593 ACTCCCTCCGTTACTAAATATTTGT 57.808 36.000 11.05 9.18 0.00 2.83
2240 4217 7.627311 ACTCCCTCCGTTACTAAATATTTGTT 58.373 34.615 11.05 0.20 0.00 2.83
2241 4218 8.105197 ACTCCCTCCGTTACTAAATATTTGTTT 58.895 33.333 11.05 0.00 0.00 2.83
2242 4219 8.866970 TCCCTCCGTTACTAAATATTTGTTTT 57.133 30.769 11.05 0.00 0.00 2.43
2243 4220 9.299465 TCCCTCCGTTACTAAATATTTGTTTTT 57.701 29.630 11.05 0.00 0.00 1.94
2244 4221 9.563898 CCCTCCGTTACTAAATATTTGTTTTTC 57.436 33.333 11.05 0.00 0.00 2.29
2263 4240 9.243637 TGTTTTTCTAAAGATTTCAAATGGACG 57.756 29.630 0.00 0.00 0.00 4.79
2264 4241 8.699749 GTTTTTCTAAAGATTTCAAATGGACGG 58.300 33.333 0.00 0.00 0.00 4.79
2265 4242 7.753309 TTTCTAAAGATTTCAAATGGACGGA 57.247 32.000 0.00 0.00 0.00 4.69
2266 4243 6.737254 TCTAAAGATTTCAAATGGACGGAC 57.263 37.500 0.00 0.00 0.00 4.79
2267 4244 6.234920 TCTAAAGATTTCAAATGGACGGACA 58.765 36.000 0.00 0.00 0.00 4.02
2268 4245 4.766404 AAGATTTCAAATGGACGGACAC 57.234 40.909 0.00 0.00 0.00 3.67
2269 4246 3.750371 AGATTTCAAATGGACGGACACA 58.250 40.909 0.00 0.00 0.00 3.72
2270 4247 4.335416 AGATTTCAAATGGACGGACACAT 58.665 39.130 0.00 0.00 0.00 3.21
2271 4248 5.496556 AGATTTCAAATGGACGGACACATA 58.503 37.500 0.00 0.00 0.00 2.29
2272 4249 6.122277 AGATTTCAAATGGACGGACACATAT 58.878 36.000 0.00 0.00 0.00 1.78
2273 4250 5.559427 TTTCAAATGGACGGACACATATG 57.441 39.130 0.00 0.00 0.00 1.78
2274 4251 3.540617 TCAAATGGACGGACACATATGG 58.459 45.455 7.80 0.00 0.00 2.74
2275 4252 3.198853 TCAAATGGACGGACACATATGGA 59.801 43.478 7.80 0.00 0.00 3.41
2276 4253 4.136796 CAAATGGACGGACACATATGGAT 58.863 43.478 7.80 0.00 0.00 3.41
2277 4254 2.908688 TGGACGGACACATATGGATG 57.091 50.000 7.80 0.00 39.16 3.51
2279 4256 3.301274 TGGACGGACACATATGGATGTA 58.699 45.455 7.80 0.00 44.82 2.29
2280 4257 3.901222 TGGACGGACACATATGGATGTAT 59.099 43.478 7.80 0.00 44.82 2.29
2281 4258 4.346709 TGGACGGACACATATGGATGTATT 59.653 41.667 7.80 0.00 44.82 1.89
2282 4259 5.163248 TGGACGGACACATATGGATGTATTT 60.163 40.000 7.80 0.00 44.82 1.40
2283 4260 6.042208 TGGACGGACACATATGGATGTATTTA 59.958 38.462 7.80 0.00 44.82 1.40
2284 4261 6.590292 GGACGGACACATATGGATGTATTTAG 59.410 42.308 7.80 0.00 44.82 1.85
2285 4262 7.297936 ACGGACACATATGGATGTATTTAGA 57.702 36.000 7.80 0.00 44.82 2.10
2286 4263 7.152645 ACGGACACATATGGATGTATTTAGAC 58.847 38.462 7.80 0.00 44.82 2.59
2287 4264 7.151976 CGGACACATATGGATGTATTTAGACA 58.848 38.462 7.80 0.00 44.82 3.41
2288 4265 7.819415 CGGACACATATGGATGTATTTAGACAT 59.181 37.037 7.80 0.00 44.82 3.06
2319 4296 5.476752 GTGTAGATCACTCATTTTGCTCC 57.523 43.478 0.00 0.00 43.13 4.70
2320 4297 4.033358 GTGTAGATCACTCATTTTGCTCCG 59.967 45.833 0.00 0.00 43.13 4.63
2321 4298 3.340814 AGATCACTCATTTTGCTCCGT 57.659 42.857 0.00 0.00 0.00 4.69
2322 4299 4.471904 AGATCACTCATTTTGCTCCGTA 57.528 40.909 0.00 0.00 0.00 4.02
2323 4300 5.028549 AGATCACTCATTTTGCTCCGTAT 57.971 39.130 0.00 0.00 0.00 3.06
2324 4301 4.813161 AGATCACTCATTTTGCTCCGTATG 59.187 41.667 0.00 0.00 0.00 2.39
2325 4302 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2326 4303 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2327 4304 4.868171 TCACTCATTTTGCTCCGTATGTAC 59.132 41.667 0.00 0.00 0.00 2.90
2328 4305 4.870426 CACTCATTTTGCTCCGTATGTACT 59.130 41.667 0.00 0.00 0.00 2.73
2329 4306 5.005779 CACTCATTTTGCTCCGTATGTACTC 59.994 44.000 0.00 0.00 0.00 2.59
2330 4307 5.079689 TCATTTTGCTCCGTATGTACTCA 57.920 39.130 0.00 0.00 0.00 3.41
2331 4308 4.868171 TCATTTTGCTCCGTATGTACTCAC 59.132 41.667 0.00 0.00 0.00 3.51
2332 4309 4.530710 TTTTGCTCCGTATGTACTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2333 4310 4.530710 TTTGCTCCGTATGTACTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2334 4311 3.503827 TGCTCCGTATGTACTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2335 4312 2.823747 TGCTCCGTATGTACTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2336 4313 3.257375 TGCTCCGTATGTACTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2337 4314 3.612860 GCTCCGTATGTACTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2338 4315 4.617530 GCTCCGTATGTACTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2339 4316 5.456548 TCCGTATGTACTCACTTGTTGAA 57.543 39.130 0.00 0.00 32.21 2.69
2340 4317 5.845103 TCCGTATGTACTCACTTGTTGAAA 58.155 37.500 0.00 0.00 32.21 2.69
2341 4318 6.460781 TCCGTATGTACTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 32.21 2.17
2342 4319 6.588756 TCCGTATGTACTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 32.21 2.17
2343 4320 6.590292 CCGTATGTACTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 32.21 2.40
2344 4321 7.117812 CCGTATGTACTCACTTGTTGAAATCTT 59.882 37.037 0.00 0.00 32.21 2.40
2345 4322 8.162880 CGTATGTACTCACTTGTTGAAATCTTC 58.837 37.037 0.00 0.00 32.21 2.87
2346 4323 8.988934 GTATGTACTCACTTGTTGAAATCTTCA 58.011 33.333 0.00 0.00 38.04 3.02
2347 4324 7.482654 TGTACTCACTTGTTGAAATCTTCAG 57.517 36.000 0.00 0.00 41.38 3.02
2348 4325 7.272244 TGTACTCACTTGTTGAAATCTTCAGA 58.728 34.615 0.00 0.00 41.38 3.27
2349 4326 7.768582 TGTACTCACTTGTTGAAATCTTCAGAA 59.231 33.333 0.00 0.00 41.38 3.02
2350 4327 7.630242 ACTCACTTGTTGAAATCTTCAGAAA 57.370 32.000 0.00 0.00 41.38 2.52
2351 4328 7.701445 ACTCACTTGTTGAAATCTTCAGAAAG 58.299 34.615 9.71 9.71 41.38 2.62
2352 4329 7.554118 ACTCACTTGTTGAAATCTTCAGAAAGA 59.446 33.333 14.85 0.00 41.38 2.52
2353 4330 7.697691 TCACTTGTTGAAATCTTCAGAAAGAC 58.302 34.615 14.85 2.36 44.13 3.01
2354 4331 7.336679 TCACTTGTTGAAATCTTCAGAAAGACA 59.663 33.333 14.85 4.36 44.13 3.41
2355 4332 7.970061 CACTTGTTGAAATCTTCAGAAAGACAA 59.030 33.333 14.85 9.92 44.13 3.18
2356 4333 8.522830 ACTTGTTGAAATCTTCAGAAAGACAAA 58.477 29.630 14.85 0.35 44.13 2.83
2357 4334 9.525409 CTTGTTGAAATCTTCAGAAAGACAAAT 57.475 29.630 7.07 0.00 44.13 2.32
2370 4347 9.973661 TCAGAAAGACAAATATTTAGGAATGGA 57.026 29.630 0.00 0.00 0.00 3.41
2372 4349 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
2373 4350 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
2374 4351 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
2375 4352 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
2383 4360 6.803366 TTAGGAATGGAGGGAGTAGTTTAC 57.197 41.667 0.00 0.00 0.00 2.01
2438 4427 5.627780 CACACGTCTTTGCCTAAATAAAACC 59.372 40.000 0.00 0.00 0.00 3.27
2441 4430 5.479027 ACGTCTTTGCCTAAATAAAACCCAT 59.521 36.000 0.00 0.00 0.00 4.00
2569 4756 2.794350 CGGTTGCACCAAAATCTTCAAC 59.206 45.455 6.21 0.00 38.47 3.18
2631 4821 5.507315 CGCCTAGGTTTTGAAAGTCAAACAT 60.507 40.000 11.31 0.00 45.03 2.71
2644 4834 9.246670 TGAAAGTCAAACATCATCCATAGAAAT 57.753 29.630 0.00 0.00 0.00 2.17
2692 4903 9.047860 TGCATTGCAGAATTTGACAGTTTTGTC 62.048 37.037 7.38 0.87 42.85 3.18
2717 4934 1.941975 GCATGTTGCCTGTTTTGCTTT 59.058 42.857 0.00 0.00 37.42 3.51
2860 5283 4.937620 TCGAATTGGACAAGAAGATCAAGG 59.062 41.667 0.00 0.00 0.00 3.61
2862 5285 3.795688 TTGGACAAGAAGATCAAGGCT 57.204 42.857 0.00 0.00 0.00 4.58
2866 5289 3.055530 GGACAAGAAGATCAAGGCTGAGA 60.056 47.826 0.00 0.00 34.23 3.27
2908 5331 4.993307 GCATCATGGCCTCCAAGA 57.007 55.556 3.32 0.00 36.95 3.02
2913 5336 0.394192 TCATGGCCTCCAAGATAGCG 59.606 55.000 3.32 0.00 36.95 4.26
2927 5350 1.004185 GATAGCGTACGAGAACGAGCA 60.004 52.381 21.65 0.00 45.68 4.26
2928 5351 0.095935 TAGCGTACGAGAACGAGCAC 59.904 55.000 21.65 0.00 45.68 4.40
2967 5390 2.605338 CGAAAACCACTGGCACATGAAG 60.605 50.000 0.00 0.00 38.20 3.02
2985 5408 5.215252 TGAAGTTCCTCGAGTTCTTCAAT 57.785 39.130 26.54 6.22 40.55 2.57
3066 5501 3.296628 CAACACACATTTGGCTAACGTC 58.703 45.455 0.00 0.00 0.00 4.34
3108 5543 0.909610 TCCTGGCAGAATTCCGAGGT 60.910 55.000 17.94 0.00 0.00 3.85
3195 5651 1.824760 CCGGGGAACACAACCGTTT 60.825 57.895 0.00 0.00 45.85 3.60
3237 5693 2.032620 GACGTGGACATCTCCTGGTAT 58.967 52.381 0.00 0.00 37.48 2.73
3390 5867 1.743772 GCGCTCAAGAAATCCCTAGCA 60.744 52.381 0.00 0.00 0.00 3.49
3997 6524 3.879295 CAGGGCATGTACAATGGTTCTAG 59.121 47.826 0.00 0.00 0.00 2.43
4050 6577 2.549754 GGCTATGTACGCATGCAATCTT 59.450 45.455 19.57 7.44 36.58 2.40
4356 6886 6.312141 TGTCTGAATCCCATCTGAATACAA 57.688 37.500 0.00 0.00 0.00 2.41
4397 6927 2.678336 GGTGAAGCTAGGTTTTGATCGG 59.322 50.000 8.87 0.00 0.00 4.18
4517 7047 3.098377 TGATGGTTTTGTCATGGATGGG 58.902 45.455 0.00 0.00 0.00 4.00
4582 7112 3.631250 ACTGGGACATGAAACACTTGTT 58.369 40.909 0.00 0.00 38.20 2.83
4622 7152 4.202441 CCCTTCATCATAACTCAACAGGG 58.798 47.826 0.00 0.00 32.71 4.45
4889 7419 2.097036 CACCATGTGCATTCAGACCAT 58.903 47.619 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.966451 CAAACCTCCACACGCCCTC 60.966 63.158 0.00 0.00 0.00 4.30
51 52 0.951558 CCACCAAAGACAAACTCCGG 59.048 55.000 0.00 0.00 0.00 5.14
56 57 2.887152 AGCAGATCCACCAAAGACAAAC 59.113 45.455 0.00 0.00 0.00 2.93
65 66 1.303561 GGTGCAAGCAGATCCACCA 60.304 57.895 10.61 0.00 45.41 4.17
66 67 2.048603 GGGTGCAAGCAGATCCACC 61.049 63.158 7.76 7.76 45.37 4.61
75 76 2.644992 CAAAGACCGGGTGCAAGC 59.355 61.111 3.30 0.00 0.00 4.01
93 94 2.052237 CACACAAACGCAGACGGC 60.052 61.111 0.00 0.00 46.04 5.68
94 95 1.151777 AGACACACAAACGCAGACGG 61.152 55.000 0.00 0.00 46.04 4.79
96 97 2.198406 TGTAGACACACAAACGCAGAC 58.802 47.619 0.00 0.00 0.00 3.51
101 102 2.286833 CCAACCTGTAGACACACAAACG 59.713 50.000 0.00 0.00 0.00 3.60
104 105 3.244422 GGATCCAACCTGTAGACACACAA 60.244 47.826 6.95 0.00 0.00 3.33
105 106 2.301870 GGATCCAACCTGTAGACACACA 59.698 50.000 6.95 0.00 0.00 3.72
137 138 6.312426 ACAAGTATCTTTGATGAAGAGAAGCG 59.688 38.462 0.00 0.00 46.99 4.68
152 153 4.332819 GCGCACCAGAATAACAAGTATCTT 59.667 41.667 0.30 0.00 0.00 2.40
153 154 3.871594 GCGCACCAGAATAACAAGTATCT 59.128 43.478 0.30 0.00 0.00 1.98
156 157 3.000041 CAGCGCACCAGAATAACAAGTA 59.000 45.455 11.47 0.00 0.00 2.24
157 158 1.806542 CAGCGCACCAGAATAACAAGT 59.193 47.619 11.47 0.00 0.00 3.16
167 168 0.602106 CCATAGGATCAGCGCACCAG 60.602 60.000 11.47 0.00 0.00 4.00
197 199 3.681897 AGACTGTCGAGAAATCATTGTGC 59.318 43.478 1.52 0.00 0.00 4.57
213 215 6.317893 CGGGCAAACCTTATTATTTAGACTGT 59.682 38.462 0.00 0.00 36.97 3.55
214 216 6.238648 CCGGGCAAACCTTATTATTTAGACTG 60.239 42.308 0.00 0.00 36.97 3.51
215 217 5.826208 CCGGGCAAACCTTATTATTTAGACT 59.174 40.000 0.00 0.00 36.97 3.24
223 225 1.409101 GGAGCCGGGCAAACCTTATTA 60.409 52.381 23.09 0.00 36.97 0.98
245 247 1.329256 CGTCATCGTCCCTCCCTTAT 58.671 55.000 0.00 0.00 0.00 1.73
274 276 1.301716 GCACCGGAGTCAGCTGAAA 60.302 57.895 20.19 0.00 0.00 2.69
278 280 1.185618 TACAAGCACCGGAGTCAGCT 61.186 55.000 9.46 6.36 39.37 4.24
317 319 4.732784 CAAAAACATAACATCCAGGTCCG 58.267 43.478 0.00 0.00 0.00 4.79
330 332 6.952935 AAAAACACGAGTTGCAAAAACATA 57.047 29.167 0.00 0.00 38.17 2.29
452 460 7.756722 CCCCCGAGTTTATAGTGTTAATATACG 59.243 40.741 0.00 0.00 0.00 3.06
462 470 3.899052 TTGTCCCCCGAGTTTATAGTG 57.101 47.619 0.00 0.00 0.00 2.74
463 471 4.472108 TGAATTGTCCCCCGAGTTTATAGT 59.528 41.667 0.00 0.00 0.00 2.12
464 472 5.031066 TGAATTGTCCCCCGAGTTTATAG 57.969 43.478 0.00 0.00 0.00 1.31
465 473 4.717778 TCTGAATTGTCCCCCGAGTTTATA 59.282 41.667 0.00 0.00 0.00 0.98
466 474 3.521937 TCTGAATTGTCCCCCGAGTTTAT 59.478 43.478 0.00 0.00 0.00 1.40
467 475 2.907696 TCTGAATTGTCCCCCGAGTTTA 59.092 45.455 0.00 0.00 0.00 2.01
501 511 4.503991 GGGAAGAAAGAGAGAGTTGCAGAA 60.504 45.833 0.00 0.00 0.00 3.02
504 514 2.975489 AGGGAAGAAAGAGAGAGTTGCA 59.025 45.455 0.00 0.00 0.00 4.08
517 527 4.699994 AGATTTAGGTGGAGAGGGAAGAA 58.300 43.478 0.00 0.00 0.00 2.52
530 549 5.801531 TGACATACGGCATAGATTTAGGT 57.198 39.130 0.00 0.00 0.00 3.08
531 550 5.063944 GCATGACATACGGCATAGATTTAGG 59.936 44.000 0.00 0.00 0.00 2.69
557 576 3.820467 TGATTCTGCACAGATTTTCCGTT 59.180 39.130 0.31 0.00 37.29 4.44
582 602 3.930229 TCGCTAGTTCTACGTACGGTTTA 59.070 43.478 21.06 1.86 0.00 2.01
593 613 3.375299 GGTTCGGTTACTCGCTAGTTCTA 59.625 47.826 0.00 0.00 37.15 2.10
614 634 6.376177 GTTACATTGGTCGGTAAGAAAAAGG 58.624 40.000 0.00 0.00 30.70 3.11
653 674 0.942410 CGAACCCGTCTTCTTCGCAA 60.942 55.000 0.00 0.00 31.26 4.85
716 1027 1.647545 CCAACTGCGTGCATACTGGG 61.648 60.000 0.00 0.00 0.00 4.45
766 1083 0.992695 GGATTAGATAGGGGGTGGGC 59.007 60.000 0.00 0.00 0.00 5.36
835 1169 3.561313 GGGAGGCTGAGTAGAGGATAGAG 60.561 56.522 0.00 0.00 0.00 2.43
897 1232 4.868734 GCACAAGGTGTAGGAGTATTGTAC 59.131 45.833 0.00 0.00 35.75 2.90
927 1262 2.255316 GAACAGCAGAACGAGAGCTAC 58.745 52.381 0.00 0.00 36.73 3.58
935 1270 0.363512 CGACGATGAACAGCAGAACG 59.636 55.000 0.00 0.00 0.00 3.95
954 1289 3.096791 GAGCACGCCAATCAGCTC 58.903 61.111 0.00 0.00 45.50 4.09
1010 1355 0.105039 GTCGCCGGAGAATTCATCCT 59.895 55.000 10.32 0.00 34.45 3.24
1086 1431 3.610791 CTCGCTGACGTCGCTGGAA 62.611 63.158 23.08 10.23 41.18 3.53
1131 1476 1.516423 GTCTGCGACCTCCTTACCC 59.484 63.158 0.00 0.00 0.00 3.69
1308 1662 8.590204 TCTGAATGCTAAATACCATCGGTTATA 58.410 33.333 0.00 0.00 37.09 0.98
1309 1663 7.450074 TCTGAATGCTAAATACCATCGGTTAT 58.550 34.615 0.00 0.00 37.09 1.89
1310 1664 6.822442 TCTGAATGCTAAATACCATCGGTTA 58.178 36.000 0.00 0.00 37.09 2.85
1314 1668 9.979270 GATAATTCTGAATGCTAAATACCATCG 57.021 33.333 3.22 0.00 0.00 3.84
1315 1669 9.979270 CGATAATTCTGAATGCTAAATACCATC 57.021 33.333 3.22 0.00 0.00 3.51
1316 1670 8.950210 CCGATAATTCTGAATGCTAAATACCAT 58.050 33.333 3.22 0.00 0.00 3.55
1318 1672 8.324163 ACCGATAATTCTGAATGCTAAATACC 57.676 34.615 3.22 0.00 0.00 2.73
1319 1673 9.599322 CAACCGATAATTCTGAATGCTAAATAC 57.401 33.333 3.22 0.00 0.00 1.89
1322 1676 7.624360 ACAACCGATAATTCTGAATGCTAAA 57.376 32.000 3.22 0.00 0.00 1.85
1323 1677 8.773645 CATACAACCGATAATTCTGAATGCTAA 58.226 33.333 3.22 0.00 0.00 3.09
1325 1679 6.767902 ACATACAACCGATAATTCTGAATGCT 59.232 34.615 3.22 0.00 0.00 3.79
1326 1680 6.852853 CACATACAACCGATAATTCTGAATGC 59.147 38.462 3.22 0.00 0.00 3.56
1327 1681 7.919690 ACACATACAACCGATAATTCTGAATG 58.080 34.615 3.22 0.00 0.00 2.67
1328 1682 9.778741 ATACACATACAACCGATAATTCTGAAT 57.221 29.630 0.00 0.00 0.00 2.57
1329 1683 9.040939 CATACACATACAACCGATAATTCTGAA 57.959 33.333 0.00 0.00 0.00 3.02
1331 1685 8.587952 TCATACACATACAACCGATAATTCTG 57.412 34.615 0.00 0.00 0.00 3.02
1332 1686 9.424319 GATCATACACATACAACCGATAATTCT 57.576 33.333 0.00 0.00 0.00 2.40
1333 1687 9.203421 TGATCATACACATACAACCGATAATTC 57.797 33.333 0.00 0.00 0.00 2.17
1335 1689 9.725019 ATTGATCATACACATACAACCGATAAT 57.275 29.630 0.00 0.00 0.00 1.28
1336 1690 9.554395 AATTGATCATACACATACAACCGATAA 57.446 29.630 0.00 0.00 0.00 1.75
1340 1694 7.373180 CGAAAATTGATCATACACATACAACCG 59.627 37.037 0.00 0.00 0.00 4.44
1341 1695 8.181573 ACGAAAATTGATCATACACATACAACC 58.818 33.333 0.00 0.00 0.00 3.77
1342 1696 9.554724 AACGAAAATTGATCATACACATACAAC 57.445 29.630 0.00 0.00 0.00 3.32
1402 1782 1.745087 CCTTGCGTGCAGGAACATATT 59.255 47.619 11.29 0.00 0.00 1.28
1404 1784 1.305219 GCCTTGCGTGCAGGAACATA 61.305 55.000 11.29 0.00 0.00 2.29
1407 1787 2.463675 GAAGCCTTGCGTGCAGGAAC 62.464 60.000 11.29 0.00 0.00 3.62
1408 1788 2.203337 AAGCCTTGCGTGCAGGAA 60.203 55.556 11.29 0.00 0.00 3.36
1409 1789 2.669569 GAAGCCTTGCGTGCAGGA 60.670 61.111 11.29 0.00 0.00 3.86
1410 1790 3.741476 GGAAGCCTTGCGTGCAGG 61.741 66.667 1.01 1.01 0.00 4.85
1411 1791 2.262471 GATGGAAGCCTTGCGTGCAG 62.262 60.000 0.00 0.00 41.41 4.41
1413 1793 1.589716 AAGATGGAAGCCTTGCGTGC 61.590 55.000 0.00 0.00 0.00 5.34
1414 1794 1.737838 TAAGATGGAAGCCTTGCGTG 58.262 50.000 0.00 0.00 0.00 5.34
1415 1795 2.717639 ATAAGATGGAAGCCTTGCGT 57.282 45.000 0.00 0.00 0.00 5.24
1416 1796 4.576463 AGTTAATAAGATGGAAGCCTTGCG 59.424 41.667 0.00 0.00 0.00 4.85
1417 1797 7.663493 AGATAGTTAATAAGATGGAAGCCTTGC 59.337 37.037 0.00 0.00 0.00 4.01
1420 1800 7.663493 GCAAGATAGTTAATAAGATGGAAGCCT 59.337 37.037 0.00 0.00 0.00 4.58
1421 1801 7.445402 TGCAAGATAGTTAATAAGATGGAAGCC 59.555 37.037 0.00 0.00 0.00 4.35
1422 1802 8.383318 TGCAAGATAGTTAATAAGATGGAAGC 57.617 34.615 0.00 0.00 0.00 3.86
1433 1843 9.071276 CCCACTTTCATATGCAAGATAGTTAAT 57.929 33.333 20.01 0.00 0.00 1.40
1457 1867 1.134007 TGGATGCATGACTGATGTCCC 60.134 52.381 2.46 0.00 42.28 4.46
1464 1874 2.816360 CGCCGTGGATGCATGACTG 61.816 63.158 2.46 0.00 0.00 3.51
1469 1879 1.647545 CTGTTTCGCCGTGGATGCAT 61.648 55.000 0.00 0.00 0.00 3.96
1470 1880 2.281139 TGTTTCGCCGTGGATGCA 60.281 55.556 0.00 0.00 0.00 3.96
1471 1881 2.032634 TCTGTTTCGCCGTGGATGC 61.033 57.895 0.00 0.00 0.00 3.91
1472 1882 0.948623 TGTCTGTTTCGCCGTGGATG 60.949 55.000 0.00 0.00 0.00 3.51
1488 1898 2.158579 ACTACTAGCTAGGAGCCCTGTC 60.159 54.545 29.69 0.00 43.77 3.51
1493 1903 1.874872 CACGACTACTAGCTAGGAGCC 59.125 57.143 29.69 20.05 43.77 4.70
1500 1910 5.411781 CCATTTTCTTCACGACTACTAGCT 58.588 41.667 0.00 0.00 0.00 3.32
1502 1912 5.962433 TCCCATTTTCTTCACGACTACTAG 58.038 41.667 0.00 0.00 0.00 2.57
1503 1913 5.713389 TCTCCCATTTTCTTCACGACTACTA 59.287 40.000 0.00 0.00 0.00 1.82
1619 3101 9.220767 GCTTTGAAGGGGATAGTTACATATAAG 57.779 37.037 0.00 0.00 0.00 1.73
1634 3116 4.272489 TCTGTTCATATGCTTTGAAGGGG 58.728 43.478 0.00 0.00 33.95 4.79
1637 3119 6.307318 GCAGTTTCTGTTCATATGCTTTGAAG 59.693 38.462 0.00 0.00 33.95 3.02
1639 3121 5.241285 TGCAGTTTCTGTTCATATGCTTTGA 59.759 36.000 0.00 0.00 33.43 2.69
1763 3561 4.338118 TGTTTCCTAGCAAGAACAACCAAG 59.662 41.667 0.00 0.00 0.00 3.61
1789 3587 9.224267 TCTACACGTCTACTTAATCAGTAAACT 57.776 33.333 0.00 0.00 37.54 2.66
1808 3607 9.546909 GGCAATGAATAATTAATCATCTACACG 57.453 33.333 14.88 3.71 35.29 4.49
1829 3628 3.368248 ACCTCTGCAATAATGTGGCAAT 58.632 40.909 0.00 0.00 37.06 3.56
1830 3629 2.754552 GACCTCTGCAATAATGTGGCAA 59.245 45.455 0.00 0.00 37.06 4.52
1879 3680 6.583050 GCTATGTAGACTAGGATTAAACTGCG 59.417 42.308 0.00 0.00 0.00 5.18
1882 3683 8.005388 TCCTGCTATGTAGACTAGGATTAAACT 58.995 37.037 0.00 0.00 29.86 2.66
2011 3816 6.070251 TGCCCTTATCTTGAGAGTTGTTATGA 60.070 38.462 0.00 0.00 0.00 2.15
2146 3959 3.249189 GTGTCAGTGGGGCCTCCA 61.249 66.667 0.00 4.11 44.79 3.86
2159 3972 5.543507 ATCACAGGGATGATTAGAGTGTC 57.456 43.478 0.00 0.00 35.76 3.67
2176 3989 2.330440 ATGATAAGGCGTGCATCACA 57.670 45.000 6.20 0.00 33.40 3.58
2214 4191 8.310122 ACAAATATTTAGTAACGGAGGGAGTA 57.690 34.615 0.00 0.00 0.00 2.59
2215 4192 7.191593 ACAAATATTTAGTAACGGAGGGAGT 57.808 36.000 0.00 0.00 0.00 3.85
2216 4193 8.502105 AAACAAATATTTAGTAACGGAGGGAG 57.498 34.615 0.00 0.00 0.00 4.30
2217 4194 8.866970 AAAACAAATATTTAGTAACGGAGGGA 57.133 30.769 0.00 0.00 0.00 4.20
2218 4195 9.563898 GAAAAACAAATATTTAGTAACGGAGGG 57.436 33.333 0.00 0.00 0.00 4.30
2237 4214 9.243637 CGTCCATTTGAAATCTTTAGAAAAACA 57.756 29.630 0.00 0.00 0.00 2.83
2238 4215 8.699749 CCGTCCATTTGAAATCTTTAGAAAAAC 58.300 33.333 0.00 0.00 0.00 2.43
2239 4216 8.634444 TCCGTCCATTTGAAATCTTTAGAAAAA 58.366 29.630 0.00 0.00 0.00 1.94
2240 4217 8.079809 GTCCGTCCATTTGAAATCTTTAGAAAA 58.920 33.333 0.00 0.00 0.00 2.29
2241 4218 7.229707 TGTCCGTCCATTTGAAATCTTTAGAAA 59.770 33.333 0.00 0.00 0.00 2.52
2242 4219 6.712998 TGTCCGTCCATTTGAAATCTTTAGAA 59.287 34.615 0.00 0.00 0.00 2.10
2243 4220 6.148811 GTGTCCGTCCATTTGAAATCTTTAGA 59.851 38.462 0.00 0.00 0.00 2.10
2244 4221 6.072728 TGTGTCCGTCCATTTGAAATCTTTAG 60.073 38.462 0.00 0.00 0.00 1.85
2245 4222 5.765677 TGTGTCCGTCCATTTGAAATCTTTA 59.234 36.000 0.00 0.00 0.00 1.85
2246 4223 4.582656 TGTGTCCGTCCATTTGAAATCTTT 59.417 37.500 0.00 0.00 0.00 2.52
2247 4224 4.141287 TGTGTCCGTCCATTTGAAATCTT 58.859 39.130 0.00 0.00 0.00 2.40
2248 4225 3.750371 TGTGTCCGTCCATTTGAAATCT 58.250 40.909 0.00 0.00 0.00 2.40
2249 4226 4.701956 ATGTGTCCGTCCATTTGAAATC 57.298 40.909 0.00 0.00 0.00 2.17
2250 4227 5.067674 CCATATGTGTCCGTCCATTTGAAAT 59.932 40.000 1.24 0.00 0.00 2.17
2251 4228 4.397730 CCATATGTGTCCGTCCATTTGAAA 59.602 41.667 1.24 0.00 0.00 2.69
2252 4229 3.944650 CCATATGTGTCCGTCCATTTGAA 59.055 43.478 1.24 0.00 0.00 2.69
2253 4230 3.198853 TCCATATGTGTCCGTCCATTTGA 59.801 43.478 1.24 0.00 0.00 2.69
2254 4231 3.540617 TCCATATGTGTCCGTCCATTTG 58.459 45.455 1.24 0.00 0.00 2.32
2255 4232 3.924114 TCCATATGTGTCCGTCCATTT 57.076 42.857 1.24 0.00 0.00 2.32
2256 4233 3.136443 ACATCCATATGTGTCCGTCCATT 59.864 43.478 1.24 0.00 44.79 3.16
2257 4234 2.705658 ACATCCATATGTGTCCGTCCAT 59.294 45.455 1.24 0.00 44.79 3.41
2258 4235 2.115427 ACATCCATATGTGTCCGTCCA 58.885 47.619 1.24 0.00 44.79 4.02
2259 4236 2.910688 ACATCCATATGTGTCCGTCC 57.089 50.000 1.24 0.00 44.79 4.79
2260 4237 7.328737 GTCTAAATACATCCATATGTGTCCGTC 59.671 40.741 1.24 0.00 45.99 4.79
2261 4238 7.152645 GTCTAAATACATCCATATGTGTCCGT 58.847 38.462 1.24 0.00 45.99 4.69
2262 4239 7.151976 TGTCTAAATACATCCATATGTGTCCG 58.848 38.462 1.24 0.00 45.99 4.79
2298 4275 4.183865 CGGAGCAAAATGAGTGATCTACA 58.816 43.478 0.00 0.00 32.02 2.74
2299 4276 4.184629 ACGGAGCAAAATGAGTGATCTAC 58.815 43.478 0.00 0.00 32.02 2.59
2300 4277 4.471904 ACGGAGCAAAATGAGTGATCTA 57.528 40.909 0.00 0.00 32.02 1.98
2301 4278 3.340814 ACGGAGCAAAATGAGTGATCT 57.659 42.857 0.00 0.00 32.02 2.75
2302 4279 4.572389 ACATACGGAGCAAAATGAGTGATC 59.428 41.667 0.00 0.00 0.00 2.92
2303 4280 4.517285 ACATACGGAGCAAAATGAGTGAT 58.483 39.130 0.00 0.00 0.00 3.06
2304 4281 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2305 4282 4.870426 AGTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2306 4283 5.086104 AGTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2307 4284 5.005779 GTGAGTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2308 4285 4.868171 GTGAGTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2309 4286 4.870426 AGTGAGTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2310 4287 5.086104 AGTGAGTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2311 4288 4.530710 AGTGAGTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2312 4289 4.242475 CAAGTGAGTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2313 4290 3.257375 ACAAGTGAGTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2314 4291 2.823747 ACAAGTGAGTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2315 4292 3.505464 ACAAGTGAGTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2316 4293 5.055642 TCAACAAGTGAGTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2317 4294 5.456548 TTCAACAAGTGAGTACATACGGA 57.543 39.130 0.00 0.00 37.61 4.69
2318 4295 6.590292 AGATTTCAACAAGTGAGTACATACGG 59.410 38.462 0.00 0.00 37.61 4.02
2319 4296 7.582435 AGATTTCAACAAGTGAGTACATACG 57.418 36.000 0.00 0.00 37.61 3.06
2320 4297 8.988934 TGAAGATTTCAACAAGTGAGTACATAC 58.011 33.333 0.00 0.00 37.61 2.39
2321 4298 9.208022 CTGAAGATTTCAACAAGTGAGTACATA 57.792 33.333 0.00 0.00 39.58 2.29
2322 4299 7.933577 TCTGAAGATTTCAACAAGTGAGTACAT 59.066 33.333 0.00 0.00 39.58 2.29
2323 4300 7.272244 TCTGAAGATTTCAACAAGTGAGTACA 58.728 34.615 0.00 0.00 39.58 2.90
2324 4301 7.715265 TCTGAAGATTTCAACAAGTGAGTAC 57.285 36.000 0.00 0.00 39.58 2.73
2325 4302 8.731275 TTTCTGAAGATTTCAACAAGTGAGTA 57.269 30.769 0.00 0.00 39.58 2.59
2326 4303 7.554118 TCTTTCTGAAGATTTCAACAAGTGAGT 59.446 33.333 0.00 0.00 39.58 3.41
2327 4304 7.854916 GTCTTTCTGAAGATTTCAACAAGTGAG 59.145 37.037 0.00 0.00 43.41 3.51
2328 4305 7.336679 TGTCTTTCTGAAGATTTCAACAAGTGA 59.663 33.333 0.00 0.00 43.41 3.41
2329 4306 7.475015 TGTCTTTCTGAAGATTTCAACAAGTG 58.525 34.615 0.00 0.00 43.41 3.16
2330 4307 7.630242 TGTCTTTCTGAAGATTTCAACAAGT 57.370 32.000 0.00 0.00 43.41 3.16
2331 4308 8.915871 TTTGTCTTTCTGAAGATTTCAACAAG 57.084 30.769 6.28 5.35 43.41 3.16
2344 4321 9.973661 TCCATTCCTAAATATTTGTCTTTCTGA 57.026 29.630 11.05 0.00 0.00 3.27
2346 4323 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
2347 4324 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
2348 4325 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
2349 4326 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
2350 4327 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
2351 4328 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
2352 4329 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
2353 4330 8.440771 ACTACTCCCTCCATTCCTAAATATTTG 58.559 37.037 11.05 1.40 0.00 2.32
2354 4331 8.582891 ACTACTCCCTCCATTCCTAAATATTT 57.417 34.615 5.89 5.89 0.00 1.40
2355 4332 8.582891 AACTACTCCCTCCATTCCTAAATATT 57.417 34.615 0.00 0.00 0.00 1.28
2356 4333 8.582891 AAACTACTCCCTCCATTCCTAAATAT 57.417 34.615 0.00 0.00 0.00 1.28
2357 4334 8.931568 GTAAACTACTCCCTCCATTCCTAAATA 58.068 37.037 0.00 0.00 0.00 1.40
2358 4335 6.910259 AAACTACTCCCTCCATTCCTAAAT 57.090 37.500 0.00 0.00 0.00 1.40
2359 4336 6.731919 TGTAAACTACTCCCTCCATTCCTAAA 59.268 38.462 0.00 0.00 0.00 1.85
2360 4337 6.266080 TGTAAACTACTCCCTCCATTCCTAA 58.734 40.000 0.00 0.00 0.00 2.69
2361 4338 5.845734 TGTAAACTACTCCCTCCATTCCTA 58.154 41.667 0.00 0.00 0.00 2.94
2362 4339 4.695606 TGTAAACTACTCCCTCCATTCCT 58.304 43.478 0.00 0.00 0.00 3.36
2363 4340 5.431179 TTGTAAACTACTCCCTCCATTCC 57.569 43.478 0.00 0.00 0.00 3.01
2364 4341 6.235664 TGTTTGTAAACTACTCCCTCCATTC 58.764 40.000 8.74 0.00 39.59 2.67
2365 4342 6.195600 TGTTTGTAAACTACTCCCTCCATT 57.804 37.500 8.74 0.00 39.59 3.16
2366 4343 5.836024 TGTTTGTAAACTACTCCCTCCAT 57.164 39.130 8.74 0.00 39.59 3.41
2367 4344 5.633655 TTGTTTGTAAACTACTCCCTCCA 57.366 39.130 8.74 0.00 39.59 3.86
2368 4345 6.544931 ACTTTTGTTTGTAAACTACTCCCTCC 59.455 38.462 8.74 0.00 39.59 4.30
2369 4346 7.563888 ACTTTTGTTTGTAAACTACTCCCTC 57.436 36.000 8.74 0.00 39.59 4.30
2370 4347 7.067859 GGAACTTTTGTTTGTAAACTACTCCCT 59.932 37.037 8.74 0.00 43.66 4.20
2371 4348 7.198390 GGAACTTTTGTTTGTAAACTACTCCC 58.802 38.462 8.74 0.00 43.66 4.30
2372 4349 7.198390 GGGAACTTTTGTTTGTAAACTACTCC 58.802 38.462 8.74 6.22 43.66 3.85
2373 4350 7.198390 GGGGAACTTTTGTTTGTAAACTACTC 58.802 38.462 8.74 0.00 43.66 2.59
2374 4351 6.183360 CGGGGAACTTTTGTTTGTAAACTACT 60.183 38.462 8.74 0.00 43.66 2.57
2375 4352 5.972973 CGGGGAACTTTTGTTTGTAAACTAC 59.027 40.000 8.74 0.00 43.66 2.73
2383 4360 0.461961 TGGCGGGGAACTTTTGTTTG 59.538 50.000 0.00 0.00 43.66 2.93
2412 4389 0.584396 TTTAGGCAAAGACGTGTGCG 59.416 50.000 0.00 0.00 41.85 5.34
2413 4390 2.989422 ATTTAGGCAAAGACGTGTGC 57.011 45.000 0.00 0.00 40.14 4.57
2416 4393 5.158494 GGGTTTTATTTAGGCAAAGACGTG 58.842 41.667 0.00 0.00 0.00 4.49
2438 4427 3.130164 TGAACTTGTGGTTGTTGACATGG 59.870 43.478 0.00 0.00 38.41 3.66
2441 4430 4.013050 TGATGAACTTGTGGTTGTTGACA 58.987 39.130 0.00 0.00 38.41 3.58
2555 4741 2.626266 GGGGAACGTTGAAGATTTTGGT 59.374 45.455 5.00 0.00 0.00 3.67
2569 4756 4.083565 TCCAAATAAAAGGAAGGGGAACG 58.916 43.478 0.00 0.00 0.00 3.95
2608 4795 5.257082 TGTTTGACTTTCAAAACCTAGGC 57.743 39.130 9.30 0.00 46.53 3.93
2631 4821 8.766476 AGAACTCTTCAGAATTTCTATGGATGA 58.234 33.333 0.00 0.74 29.52 2.92
2644 4834 5.605534 CAGTTTCCTGAGAACTCTTCAGAA 58.394 41.667 3.94 0.00 41.50 3.02
2717 4934 4.212425 CGCCATTGTTGTTGTAGTACTTGA 59.788 41.667 0.00 0.00 0.00 3.02
2772 5195 1.808945 TCTCTGTCCGGAACTCGTAAC 59.191 52.381 5.23 0.00 37.11 2.50
2779 5202 0.178301 GGGGATTCTCTGTCCGGAAC 59.822 60.000 5.23 0.59 36.58 3.62
2860 5283 0.107654 AGGTAACCGCCATTCTCAGC 60.108 55.000 0.00 0.00 37.17 4.26
2862 5285 0.174845 CGAGGTAACCGCCATTCTCA 59.825 55.000 0.00 0.00 37.17 3.27
2907 5330 1.004185 TGCTCGTTCTCGTACGCTATC 60.004 52.381 11.24 0.49 41.16 2.08
2908 5331 1.012086 TGCTCGTTCTCGTACGCTAT 58.988 50.000 11.24 0.00 41.16 2.97
2927 5350 1.682982 GACGACGTTCTTGATGACGT 58.317 50.000 0.13 0.78 45.65 4.34
2928 5351 0.628781 CGACGACGTTCTTGATGACG 59.371 55.000 0.13 0.00 38.19 4.35
2967 5390 3.748568 AGCAATTGAAGAACTCGAGGAAC 59.251 43.478 18.41 7.49 0.00 3.62
2985 5408 4.698304 CCTAAAATCTTACCGTTCCAGCAA 59.302 41.667 0.00 0.00 0.00 3.91
3053 5488 2.172851 TCGTTGGACGTTAGCCAAAT 57.827 45.000 8.64 0.00 46.18 2.32
3108 5543 2.662596 GCCTGGGTCGTGTGATCA 59.337 61.111 0.00 0.00 0.00 2.92
3183 5639 1.061253 CGCGTCAAACGGTTGTGTT 59.939 52.632 13.90 0.00 42.82 3.32
3195 5651 2.338620 CACCAGTCTTCCGCGTCA 59.661 61.111 4.92 0.00 0.00 4.35
3204 5660 3.224324 ACGTCCGTGCACCAGTCT 61.224 61.111 12.15 0.00 0.00 3.24
3324 5789 3.691342 CGGTCCTTGGTCGCCTCA 61.691 66.667 0.00 0.00 0.00 3.86
3381 5858 2.746375 CGGGTTGGCTGCTAGGGAT 61.746 63.158 0.00 0.00 0.00 3.85
3975 6502 2.726821 AGAACCATTGTACATGCCCTG 58.273 47.619 0.00 0.00 0.00 4.45
4050 6577 1.269723 CAAGACAGTCACCTCGTGCTA 59.730 52.381 2.66 0.00 32.98 3.49
4356 6886 2.237392 CCCTTAGCTCAGTTGCCTTAGT 59.763 50.000 0.00 0.00 0.00 2.24
4397 6927 8.064222 CGTCCATCACTATCAACAATATGAAAC 58.936 37.037 0.00 0.00 32.06 2.78
4517 7047 1.715585 CCGCCATGACACGTTGATC 59.284 57.895 0.00 0.00 0.00 2.92
4582 7112 5.600898 TGAAGGGTTCTCATATTCGTCCATA 59.399 40.000 0.00 0.00 0.00 2.74
4622 7152 3.219176 TCTCCAAAGATCATCCATGGC 57.781 47.619 6.96 0.00 0.00 4.40
4889 7419 8.941995 ATTCTGTATCTAGCAGTATTGGTCTA 57.058 34.615 0.00 0.00 36.27 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.