AutoCloner

Multiple sequence alignment - TraesCS7B01G074900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G074900	chr7B	100.000	2555	0	0	1	2555	84387844	84390398	0.000000e+00	4719.0
1	TraesCS7B01G074900	chr7B	89.231	715	54	15	1821	2526	84486048	84486748	0.000000e+00	872.0
2	TraesCS7B01G074900	chr7B	95.034	443	21	1	987	1428	84463131	84463573	0.000000e+00	695.0
3	TraesCS7B01G074900	chr7B	84.397	564	79	7	55	612	656516268	656515708	1.730000e-151	545.0
4	TraesCS7B01G074900	chr7B	86.866	335	27	6	1424	1746	84485679	84486008	2.420000e-95	359.0
5	TraesCS7B01G074900	chr7B	94.000	100	5	1	808	906	84461661	84461760	1.580000e-32	150.0
6	TraesCS7B01G074900	chr7B	97.143	35	1	0	27	61	84460780	84460814	2.750000e-05	60.2
7	TraesCS7B01G074900	chr7D	92.930	1768	82	15	812	2555	123219120	123220868	0.000000e+00	2532.0
8	TraesCS7B01G074900	chr7D	86.214	515	64	7	66	576	533938354	533938865	3.720000e-153	551.0
9	TraesCS7B01G074900	chr7D	90.798	163	15	0	619	781	21097087	21096925	4.280000e-53	219.0
10	TraesCS7B01G074900	chr7D	90.741	162	14	1	620	781	230666195	230666355	5.540000e-52	215.0
11	TraesCS7B01G074900	chr7A	86.942	1210	86	36	812	1981	126122007	126123184	0.000000e+00	1293.0
12	TraesCS7B01G074900	chr7A	93.809	533	23	8	2030	2555	126123389	126123918	0.000000e+00	793.0
13	TraesCS7B01G074900	chr7A	90.361	166	16	0	622	787	475768999	475768834	4.280000e-53	219.0
14	TraesCS7B01G074900	chr2B	92.920	565	37	3	63	624	716812057	716812621	0.000000e+00	819.0
15	TraesCS7B01G074900	chr2B	91.411	163	14	0	616	778	716813492	716813654	9.200000e-55	224.0
16	TraesCS7B01G074900	chr5D	91.087	561	41	8	61	614	409441834	409442392	0.000000e+00	750.0
17	TraesCS7B01G074900	chr5D	92.727	165	12	0	616	780	409443271	409443435	3.290000e-59	239.0
18	TraesCS7B01G074900	chr5D	82.039	206	33	3	1285	1488	352454334	352454131	3.380000e-39	172.0
19	TraesCS7B01G074900	chr4D	90.494	547	34	10	64	608	188381235	188381765	0.000000e+00	706.0
20	TraesCS7B01G074900	chr4D	93.976	166	10	0	616	781	188382652	188382817	4.220000e-63	252.0
21	TraesCS7B01G074900	chr4B	90.329	517	43	6	111	623	640647947	640647434	0.000000e+00	671.0
22	TraesCS7B01G074900	chr3A	87.567	563	60	10	58	614	34540122	34540680	0.000000e+00	643.0
23	TraesCS7B01G074900	chr3A	82.039	206	33	3	1285	1488	398879727	398879524	3.380000e-39	172.0
24	TraesCS7B01G074900	chr1B	93.478	414	23	4	204	614	589076448	589076860	1.680000e-171	612.0
25	TraesCS7B01G074900	chr1B	89.759	166	17	0	616	781	589083269	589083434	1.990000e-51	213.0
26	TraesCS7B01G074900	chr2A	87.475	503	57	6	116	614	170067208	170067708	2.200000e-160	575.0
27	TraesCS7B01G074900	chr5B	90.698	172	16	0	615	786	655140283	655140112	1.980000e-56	230.0
28	TraesCS7B01G074900	chr5B	82.039	206	33	3	1285	1488	415127643	415127440	3.380000e-39	172.0
29	TraesCS7B01G074900	chr6A	90.244	164	16	0	616	779	520928352	520928515	5.540000e-52	215.0
30	TraesCS7B01G074900	chr6A	82.039	206	33	3	1285	1488	116813142	116812939	3.380000e-39	172.0
31	TraesCS7B01G074900	chr5A	82.075	212	34	3	1279	1488	453519566	453519775	7.260000e-41	178.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G074900	chr7B	84387844	84390398	2554	False	4719.000000	4719	100.000000	1	2555	1	chr7B.!!$F1	2554
1	TraesCS7B01G074900	chr7B	84485679	84486748	1069	False	615.500000	872	88.048500	1424	2526	2	chr7B.!!$F3	1102
2	TraesCS7B01G074900	chr7B	656515708	656516268	560	True	545.000000	545	84.397000	55	612	1	chr7B.!!$R1	557
3	TraesCS7B01G074900	chr7B	84460780	84463573	2793	False	301.733333	695	95.392333	27	1428	3	chr7B.!!$F2	1401
4	TraesCS7B01G074900	chr7D	123219120	123220868	1748	False	2532.000000	2532	92.930000	812	2555	1	chr7D.!!$F1	1743
5	TraesCS7B01G074900	chr7D	533938354	533938865	511	False	551.000000	551	86.214000	66	576	1	chr7D.!!$F3	510
6	TraesCS7B01G074900	chr7A	126122007	126123918	1911	False	1043.000000	1293	90.375500	812	2555	2	chr7A.!!$F1	1743
7	TraesCS7B01G074900	chr2B	716812057	716813654	1597	False	521.500000	819	92.165500	63	778	2	chr2B.!!$F1	715
8	TraesCS7B01G074900	chr5D	409441834	409443435	1601	False	494.500000	750	91.907000	61	780	2	chr5D.!!$F1	719
9	TraesCS7B01G074900	chr4D	188381235	188382817	1582	False	479.000000	706	92.235000	64	781	2	chr4D.!!$F1	717
10	TraesCS7B01G074900	chr4B	640647434	640647947	513	True	671.000000	671	90.329000	111	623	1	chr4B.!!$R1	512
11	TraesCS7B01G074900	chr3A	34540122	34540680	558	False	643.000000	643	87.567000	58	614	1	chr3A.!!$F1	556
12	TraesCS7B01G074900	chr2A	170067208	170067708	500	False	575.000000	575	87.475000	116	614	1	chr2A.!!$F1	498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
984	3692	0.036388	TTGAGTTGCCGAGGTCCATC	60.036	55.0	0.0	0.0	0.0	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2459	5365	0.108138	GGAGGGAGGTCACGATGTTG	60.108	60.0	0.0	0.0	0.0	3.33	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	3.176297	TCCGAAATGGCCCTTGGT	58.824	55.556	0.00	0.00	37.80	3.67
18	19	1.001393	TCCGAAATGGCCCTTGGTC	60.001	57.895	0.00	0.00	37.80	4.02
19	20	2.052104	CCGAAATGGCCCTTGGTCC	61.052	63.158	0.00	0.00	0.00	4.46
20	21	2.052104	CGAAATGGCCCTTGGTCCC	61.052	63.158	0.00	0.00	0.00	4.46
21	22	2.037208	AAATGGCCCTTGGTCCCG	59.963	61.111	0.00	0.00	0.00	5.14
22	23	3.600410	AAATGGCCCTTGGTCCCGG	62.600	63.158	0.00	0.00	0.00	5.73
61	62	2.284754	TTCTGTGTGCTGGCCAAATA	57.715	45.000	7.01	0.00	0.00	1.40
131	139	8.434589	AATCAAATCCTAAACTTTGAATCCCA	57.565	30.769	2.26	0.00	42.72	4.37
140	148	6.499106	AAACTTTGAATCCCAGAAATTGGT	57.501	33.333	0.00	0.00	46.25	3.67
145	153	4.855340	TGAATCCCAGAAATTGGTACTCC	58.145	43.478	0.00	0.00	46.25	3.85
608	1126	4.895668	AATGATTTGGATTGTTGGCTGT	57.104	36.364	0.00	0.00	0.00	4.40
614	1132	1.133513	TGGATTGTTGGCTGTGGACTT	60.134	47.619	0.00	0.00	0.00	3.01
617	1135	2.363306	TTGTTGGCTGTGGACTTGAT	57.637	45.000	0.00	0.00	0.00	2.57
620	1138	0.961019	TTGGCTGTGGACTTGATTGC	59.039	50.000	0.00	0.00	0.00	3.56
704	2108	4.159879	CCGGGATTAGAGAGTTTAGTGTGT	59.840	45.833	0.00	0.00	0.00	3.72
713	2117	9.607988	TTAGAGAGTTTAGTGTGTTGATTTCAA	57.392	29.630	0.00	0.00	0.00	2.69
730	2134	3.863407	AAGGATTGAGAGTTCGGGC	57.137	52.632	0.00	0.00	0.00	6.13
745	2149	2.312390	TCGGGCTTTGGTTTAGCTTTT	58.688	42.857	0.00	0.00	38.67	2.27
784	2188	9.961264	AAGGTTTATTTTAAACTTTTTCCACCA	57.039	25.926	9.33	0.00	31.10	4.17
803	2207	4.687018	CACCAAATAACAGTAGTGTACGCA	59.313	41.667	9.48	0.00	35.08	5.24
804	2208	5.350365	CACCAAATAACAGTAGTGTACGCAT	59.650	40.000	9.48	0.00	35.08	4.73
805	2209	5.579511	ACCAAATAACAGTAGTGTACGCATC	59.420	40.000	9.48	1.07	35.08	3.91
806	2210	5.006358	CCAAATAACAGTAGTGTACGCATCC	59.994	44.000	9.48	0.00	35.08	3.51
807	2211	4.994907	ATAACAGTAGTGTACGCATCCA	57.005	40.909	9.48	0.00	35.08	3.41
808	2212	2.649331	ACAGTAGTGTACGCATCCAC	57.351	50.000	9.48	1.15	34.05	4.02
809	2213	1.135489	ACAGTAGTGTACGCATCCACG	60.135	52.381	9.48	0.00	34.05	4.94
810	2214	0.454600	AGTAGTGTACGCATCCACGG	59.545	55.000	9.48	0.00	36.69	4.94
844	2248	3.244491	CCAGCAGAGGAGCATAAATAGCT	60.244	47.826	0.00	0.00	46.82	3.32
876	2280	4.021016	CCTACCTCAGCTCAACAACTAACT	60.021	45.833	0.00	0.00	0.00	2.24
887	2291	1.907255	ACAACTAACTAGCCCCTCCAC	59.093	52.381	0.00	0.00	0.00	4.02
906	3601	0.603707	CACGAGTGAAGCACCACCAT	60.604	55.000	0.00	0.00	37.76	3.55
922	3617	1.271597	ACCATCCACCAGTCAAGCTTC	60.272	52.381	0.00	0.00	0.00	3.86
924	3619	2.553904	CCATCCACCAGTCAAGCTTCTT	60.554	50.000	0.00	0.00	0.00	2.52
961	3669	4.021016	CAGAAGTTACACCCTAGCAGAAGT	60.021	45.833	0.00	0.00	0.00	3.01
963	3671	4.538746	AGTTACACCCTAGCAGAAGTTC	57.461	45.455	0.00	0.00	0.00	3.01
964	3672	3.056749	AGTTACACCCTAGCAGAAGTTCG	60.057	47.826	0.00	0.00	0.00	3.95
965	3673	1.339097	ACACCCTAGCAGAAGTTCGT	58.661	50.000	0.00	0.00	0.00	3.85
967	3675	2.069273	CACCCTAGCAGAAGTTCGTTG	58.931	52.381	0.00	0.00	0.00	4.10
968	3676	1.968493	ACCCTAGCAGAAGTTCGTTGA	59.032	47.619	0.00	0.00	0.00	3.18
969	3677	2.028930	ACCCTAGCAGAAGTTCGTTGAG	60.029	50.000	0.00	0.00	0.00	3.02
970	3678	2.028930	CCCTAGCAGAAGTTCGTTGAGT	60.029	50.000	0.00	0.00	0.00	3.41
971	3679	3.555168	CCCTAGCAGAAGTTCGTTGAGTT	60.555	47.826	0.00	0.00	0.00	3.01
972	3680	3.430218	CCTAGCAGAAGTTCGTTGAGTTG	59.570	47.826	0.00	0.00	0.00	3.16
973	3681	1.599542	AGCAGAAGTTCGTTGAGTTGC	59.400	47.619	0.00	0.10	0.00	4.17
974	3682	1.334149	GCAGAAGTTCGTTGAGTTGCC	60.334	52.381	0.00	0.00	0.00	4.52
975	3683	1.070577	CAGAAGTTCGTTGAGTTGCCG	60.071	52.381	0.00	0.00	0.00	5.69
976	3684	1.202486	AGAAGTTCGTTGAGTTGCCGA	60.202	47.619	0.00	0.00	0.00	5.54
977	3685	1.192534	GAAGTTCGTTGAGTTGCCGAG	59.807	52.381	0.00	0.00	31.54	4.63
978	3686	0.600255	AGTTCGTTGAGTTGCCGAGG	60.600	55.000	0.00	0.00	31.54	4.63
979	3687	0.878961	GTTCGTTGAGTTGCCGAGGT	60.879	55.000	0.00	0.00	31.54	3.85
980	3688	0.599204	TTCGTTGAGTTGCCGAGGTC	60.599	55.000	0.00	0.00	31.54	3.85
981	3689	2.027625	CGTTGAGTTGCCGAGGTCC	61.028	63.158	0.00	0.00	0.00	4.46
982	3690	1.070786	GTTGAGTTGCCGAGGTCCA	59.929	57.895	0.00	0.00	0.00	4.02
983	3691	0.321653	GTTGAGTTGCCGAGGTCCAT	60.322	55.000	0.00	0.00	0.00	3.41
984	3692	0.036388	TTGAGTTGCCGAGGTCCATC	60.036	55.000	0.00	0.00	0.00	3.51
985	3693	1.191489	TGAGTTGCCGAGGTCCATCA	61.191	55.000	0.00	0.00	0.00	3.07
1013	3721	2.885135	TTCTGCATGGACTTGGACAT	57.115	45.000	0.00	0.00	0.00	3.06
1017	3725	1.669999	GCATGGACTTGGACATGGCC	61.670	60.000	12.04	12.04	43.50	5.36
1502	4214	2.744318	CGCGTTACATGGCCACCA	60.744	61.111	8.16	0.00	38.19	4.17
1600	4315	5.122519	TGTGAACGATGTATATGGTGCAAT	58.877	37.500	0.00	0.00	33.03	3.56
1601	4316	5.007528	TGTGAACGATGTATATGGTGCAATG	59.992	40.000	0.00	0.00	33.03	2.82
1602	4317	4.024133	TGAACGATGTATATGGTGCAATGC	60.024	41.667	0.00	0.00	28.71	3.56
1603	4318	3.475575	ACGATGTATATGGTGCAATGCA	58.524	40.909	2.72	2.72	35.60	3.96
1604	4319	3.882288	ACGATGTATATGGTGCAATGCAA	59.118	39.130	10.44	0.00	41.47	4.08
1622	4337	3.058983	TGCAAGTAATTGAAGCGTCTGTG	60.059	43.478	7.18	0.00	0.00	3.66
1731	4457	8.822855	CATGCAGCATGTACAAATTCATATTTT	58.177	29.630	25.12	0.00	39.31	1.82
1748	4474	9.995003	TTCATATTTTAAGTTCAAATGGCAGTT	57.005	25.926	5.46	0.00	0.00	3.16
1758	4484	6.751888	AGTTCAAATGGCAGTTATAAATTCGC	59.248	34.615	0.00	0.00	0.00	4.70
1876	4617	8.507524	AGTTTATAAAGATTGGAGTAAGTGGC	57.492	34.615	0.00	0.00	0.00	5.01
2087	4988	5.394224	GGTGACCTACCTTCTATCATAGC	57.606	47.826	0.00	0.00	46.51	2.97
2258	5161	1.860676	TTTTTGTCGACCTCTGACCG	58.139	50.000	14.12	0.00	35.46	4.79
2302	5206	3.191162	GTGCAATGTACAGAGCCAATCAA	59.809	43.478	16.80	0.00	0.00	2.57
2391	5296	4.201753	TGCTACGAACTGACACGTATCTAC	60.202	45.833	0.00	0.00	42.52	2.59
2414	5320	2.038837	GTAGCCGTGGAACCTTGCC	61.039	63.158	0.00	0.00	0.00	4.52
2441	5347	7.495279	GCTCTCATCATATCATCTTGGTATTCC	59.505	40.741	0.00	0.00	0.00	3.01
2459	5365	0.962356	CCCCATCCACACAACTGCTC	60.962	60.000	0.00	0.00	0.00	4.26
2464	5370	2.346766	TCCACACAACTGCTCAACAT	57.653	45.000	0.00	0.00	0.00	2.71
2526	5432	5.772393	TTGGGGCTCAATTAGAAGACTAA	57.228	39.130	0.00	0.00	41.87	2.24
2533	5442	6.458888	GGCTCAATTAGAAGACTAATGGCAAC	60.459	42.308	0.00	0.00	45.19	4.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
3	4	2.052104	CGGGACCAAGGGCCATTTC	61.052	63.158	14.17	0.00	0.00	2.17
10	11	3.400054	GGAGACCGGGACCAAGGG	61.400	72.222	6.32	2.48	0.00	3.95
11	12	2.606519	TGGAGACCGGGACCAAGG	60.607	66.667	6.32	3.88	0.00	3.61
12	13	1.764571	TTGTGGAGACCGGGACCAAG	61.765	60.000	15.94	0.00	35.40	3.61
13	14	1.764571	CTTGTGGAGACCGGGACCAA	61.765	60.000	15.94	4.97	35.40	3.67
14	15	2.122769	TTGTGGAGACCGGGACCA	60.123	61.111	6.32	9.56	0.00	4.02
15	16	1.265454	ATCTTGTGGAGACCGGGACC	61.265	60.000	6.32	6.65	37.17	4.46
16	17	0.613777	AATCTTGTGGAGACCGGGAC	59.386	55.000	6.32	0.00	37.17	4.46
17	18	1.358152	AAATCTTGTGGAGACCGGGA	58.642	50.000	6.32	0.00	37.17	5.14
18	19	2.906354	CTAAATCTTGTGGAGACCGGG	58.094	52.381	6.32	0.00	37.17	5.73
19	20	2.280628	GCTAAATCTTGTGGAGACCGG	58.719	52.381	0.00	0.00	37.17	5.28
20	21	2.972625	TGCTAAATCTTGTGGAGACCG	58.027	47.619	0.00	0.00	37.17	4.79
21	22	5.649831	AGAAATGCTAAATCTTGTGGAGACC	59.350	40.000	0.00	0.00	37.17	3.85
22	23	6.150140	ACAGAAATGCTAAATCTTGTGGAGAC	59.850	38.462	0.00	0.00	37.17	3.36
23	24	6.149973	CACAGAAATGCTAAATCTTGTGGAGA	59.850	38.462	0.00	0.00	39.13	3.71
24	25	6.072286	ACACAGAAATGCTAAATCTTGTGGAG	60.072	38.462	6.29	0.00	31.97	3.86
25	26	5.769662	ACACAGAAATGCTAAATCTTGTGGA	59.230	36.000	6.29	0.00	31.97	4.02
54	55	7.744087	ATTTTGGACTTTTTCCTTATTTGGC	57.256	32.000	0.00	0.00	46.10	4.52
140	148	2.027561	CCGGGATGACAAGTTTGGAGTA	60.028	50.000	0.00	0.00	0.00	2.59
145	153	2.185004	AGACCGGGATGACAAGTTTG	57.815	50.000	6.32	0.00	0.00	2.93
190	341	2.490991	GGATTGTAGTATTCCCGGTGC	58.509	52.381	0.00	0.00	0.00	5.01
591	1109	2.299867	GTCCACAGCCAACAATCCAAAT	59.700	45.455	0.00	0.00	0.00	2.32
608	1126	1.675714	CCAGTAGCGCAATCAAGTCCA	60.676	52.381	11.47	0.00	0.00	4.02
614	1132	2.124736	GGCCCAGTAGCGCAATCA	60.125	61.111	11.47	0.00	0.00	2.57
645	2049	0.460311	AGAGGACTTCGCCGGTATTG	59.540	55.000	1.90	0.00	0.00	1.90
704	2108	5.412594	CCGAACTCTCAATCCTTGAAATCAA	59.587	40.000	0.00	0.00	39.58	2.57
713	2117	1.280457	AAGCCCGAACTCTCAATCCT	58.720	50.000	0.00	0.00	0.00	3.24
730	2134	5.195001	TGTAGGCAAAAGCTAAACCAAAG	57.805	39.130	0.00	0.00	0.00	2.77
770	2174	8.755028	ACTACTGTTATTTGGTGGAAAAAGTTT	58.245	29.630	0.00	0.00	0.00	2.66
771	2175	8.194769	CACTACTGTTATTTGGTGGAAAAAGTT	58.805	33.333	0.00	0.00	0.00	2.66
781	2185	4.885413	TGCGTACACTACTGTTATTTGGT	58.115	39.130	0.00	0.00	0.00	3.67
782	2186	5.006358	GGATGCGTACACTACTGTTATTTGG	59.994	44.000	0.00	0.00	0.00	3.28
783	2187	5.579119	TGGATGCGTACACTACTGTTATTTG	59.421	40.000	0.00	0.00	0.00	2.32
784	2188	5.579511	GTGGATGCGTACACTACTGTTATTT	59.420	40.000	14.40	0.00	36.19	1.40
786	2190	4.679662	GTGGATGCGTACACTACTGTTAT	58.320	43.478	14.40	0.00	36.19	1.89
792	2196	0.452987	TCCGTGGATGCGTACACTAC	59.547	55.000	19.06	0.00	37.01	2.73
803	2207	1.141053	GGTTTAGGCTGATCCGTGGAT	59.859	52.381	0.00	0.00	40.77	3.41
804	2208	0.539986	GGTTTAGGCTGATCCGTGGA	59.460	55.000	0.00	0.00	40.77	4.02
805	2209	0.251916	TGGTTTAGGCTGATCCGTGG	59.748	55.000	0.00	0.00	40.77	4.94
806	2210	1.656652	CTGGTTTAGGCTGATCCGTG	58.343	55.000	0.00	0.00	40.77	4.94
807	2211	0.107654	GCTGGTTTAGGCTGATCCGT	60.108	55.000	0.00	0.00	40.77	4.69
808	2212	0.107703	TGCTGGTTTAGGCTGATCCG	60.108	55.000	0.00	0.00	40.77	4.18
809	2213	1.210478	TCTGCTGGTTTAGGCTGATCC	59.790	52.381	0.00	0.00	32.92	3.36
810	2214	2.559440	CTCTGCTGGTTTAGGCTGATC	58.441	52.381	0.00	0.00	36.24	2.92
844	2248	1.379977	CTGAGGTAGGTGCGGGAGA	60.380	63.158	0.00	0.00	0.00	3.71
876	2280	2.435120	TCACTCGTGTGGAGGGGCTA	62.435	60.000	16.88	0.00	46.75	3.93
887	2291	0.603707	ATGGTGGTGCTTCACTCGTG	60.604	55.000	9.23	0.00	37.75	4.35
899	3594	0.401738	CTTGACTGGTGGATGGTGGT	59.598	55.000	0.00	0.00	0.00	4.16
906	3601	3.297134	AAAAGAAGCTTGACTGGTGGA	57.703	42.857	2.10	0.00	0.00	4.02
924	3619	9.615037	GGTGTAACTTCTGCTGGTCTAGCTAAA	62.615	44.444	9.82	3.16	45.28	1.85
934	3629	2.678190	GCTAGGGTGTAACTTCTGCTGG	60.678	54.545	0.00	0.00	36.74	4.85
935	3630	2.028112	TGCTAGGGTGTAACTTCTGCTG	60.028	50.000	0.00	0.00	36.74	4.41
941	3636	4.560919	CGAACTTCTGCTAGGGTGTAACTT	60.561	45.833	0.00	0.00	36.74	2.66
961	3669	0.599204	GACCTCGGCAACTCAACGAA	60.599	55.000	0.00	0.00	36.08	3.85
963	3671	2.027625	GGACCTCGGCAACTCAACG	61.028	63.158	0.00	0.00	0.00	4.10
964	3672	0.321653	ATGGACCTCGGCAACTCAAC	60.322	55.000	0.00	0.00	0.00	3.18
965	3673	0.036388	GATGGACCTCGGCAACTCAA	60.036	55.000	0.00	0.00	0.00	3.02
967	3675	0.460987	CTGATGGACCTCGGCAACTC	60.461	60.000	0.00	0.00	0.00	3.01
968	3676	1.194781	ACTGATGGACCTCGGCAACT	61.195	55.000	0.00	0.00	0.00	3.16
969	3677	0.741221	GACTGATGGACCTCGGCAAC	60.741	60.000	0.00	0.00	0.00	4.17
970	3678	1.596934	GACTGATGGACCTCGGCAA	59.403	57.895	0.00	0.00	0.00	4.52
971	3679	2.359169	GGACTGATGGACCTCGGCA	61.359	63.158	0.00	0.00	0.00	5.69
972	3680	1.690219	ATGGACTGATGGACCTCGGC	61.690	60.000	0.00	0.00	0.00	5.54
973	3681	0.390860	GATGGACTGATGGACCTCGG	59.609	60.000	0.00	0.00	0.00	4.63
974	3682	1.407936	AGATGGACTGATGGACCTCG	58.592	55.000	0.00	0.00	0.00	4.63
975	3683	3.454082	AGAAAGATGGACTGATGGACCTC	59.546	47.826	0.00	0.00	0.00	3.85
976	3684	3.199508	CAGAAAGATGGACTGATGGACCT	59.800	47.826	0.00	0.00	34.07	3.85
977	3685	3.539604	CAGAAAGATGGACTGATGGACC	58.460	50.000	0.00	0.00	34.07	4.46
978	3686	2.941720	GCAGAAAGATGGACTGATGGAC	59.058	50.000	0.00	0.00	34.07	4.02
979	3687	2.573009	TGCAGAAAGATGGACTGATGGA	59.427	45.455	0.00	0.00	34.07	3.41
980	3688	2.995283	TGCAGAAAGATGGACTGATGG	58.005	47.619	0.00	0.00	34.07	3.51
981	3689	3.315470	CCATGCAGAAAGATGGACTGATG	59.685	47.826	0.00	0.00	41.63	3.07
982	3690	3.201487	TCCATGCAGAAAGATGGACTGAT	59.799	43.478	0.20	0.00	42.67	2.90
983	3691	2.573009	TCCATGCAGAAAGATGGACTGA	59.427	45.455	0.20	0.00	42.67	3.41
984	3692	2.995283	TCCATGCAGAAAGATGGACTG	58.005	47.619	0.20	0.00	42.67	3.51
1013	3721	1.202758	GGTTCGTCATATCCATGGCCA	60.203	52.381	8.56	8.56	32.87	5.36
1017	3725	4.875536	TGTTCTTGGTTCGTCATATCCATG	59.124	41.667	0.00	0.00	0.00	3.66
1125	3833	0.178970	ATGGATACGGCGGGACTAGT	60.179	55.000	13.24	0.00	42.51	2.57
1600	4315	3.058983	CACAGACGCTTCAATTACTTGCA	60.059	43.478	0.00	0.00	32.11	4.08
1601	4316	3.482786	CACAGACGCTTCAATTACTTGC	58.517	45.455	0.00	0.00	32.11	4.01
1602	4317	3.482786	GCACAGACGCTTCAATTACTTG	58.517	45.455	0.00	0.00	0.00	3.16
1603	4318	2.157668	CGCACAGACGCTTCAATTACTT	59.842	45.455	0.00	0.00	0.00	2.24
1604	4319	1.726791	CGCACAGACGCTTCAATTACT	59.273	47.619	0.00	0.00	0.00	2.24
1622	4337	3.846360	AGTACTACCACAAGAATCACGC	58.154	45.455	0.00	0.00	0.00	5.34
1731	4457	9.781834	CGAATTTATAACTGCCATTTGAACTTA	57.218	29.630	0.00	0.00	0.00	2.24
1758	4484	9.443283	GCAATCTACTGCAGTAAAGATAAATTG	57.557	33.333	25.42	21.48	42.17	2.32
1876	4617	1.202580	GGGAGATGAGTGAATGGACGG	60.203	57.143	0.00	0.00	0.00	4.79
2087	4988	1.733912	ACATACATTCGCAGCACTGTG	59.266	47.619	2.76	2.76	42.10	3.66
2154	5057	7.564793	CATTACCCATATCCATCTATTTCGGA	58.435	38.462	0.00	0.00	0.00	4.55
2257	5160	1.657181	GCACCAACTTGAAACCGCG	60.657	57.895	0.00	0.00	0.00	6.46
2258	5161	0.179124	TTGCACCAACTTGAAACCGC	60.179	50.000	0.00	0.00	0.00	5.68
2302	5206	2.323999	TGGGCTCCCATGAAAATGTT	57.676	45.000	2.93	0.00	41.89	2.71
2391	5296	1.218316	GGTTCCACGGCTACCTGAG	59.782	63.158	0.00	0.00	0.00	3.35
2414	5320	4.818642	ACCAAGATGATATGATGAGAGCG	58.181	43.478	0.00	0.00	0.00	5.03
2416	5322	7.986320	GGGAATACCAAGATGATATGATGAGAG	59.014	40.741	0.00	0.00	39.85	3.20
2441	5347	0.250858	TGAGCAGTTGTGTGGATGGG	60.251	55.000	0.00	0.00	0.00	4.00
2459	5365	0.108138	GGAGGGAGGTCACGATGTTG	60.108	60.000	0.00	0.00	0.00	3.33
2464	5370	0.974383	GAAAAGGAGGGAGGTCACGA	59.026	55.000	0.00	0.00	0.00	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.