Multiple sequence alignment - TraesCS7B01G074700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G074700 chr7B 100.000 3494 0 0 1 3494 84323263 84326756 0.000000e+00 6453
1 TraesCS7B01G074700 chr7D 94.345 2405 110 16 243 2640 123156045 123158430 0.000000e+00 3664
2 TraesCS7B01G074700 chr7D 78.396 1509 232 46 993 2484 19399624 19401055 0.000000e+00 894
3 TraesCS7B01G074700 chr7A 96.000 1675 60 3 828 2495 125995029 125993355 0.000000e+00 2715
4 TraesCS7B01G074700 chr7A 96.236 797 28 2 2699 3494 514087721 514088516 0.000000e+00 1304
5 TraesCS7B01G074700 chr7A 91.667 336 23 4 507 839 125995378 125995045 8.840000e-126 460
6 TraesCS7B01G074700 chr7A 94.273 227 11 1 243 469 126019537 126019313 2.580000e-91 346
7 TraesCS7B01G074700 chr7A 80.549 437 59 19 1525 1959 19853602 19854014 2.620000e-81 313
8 TraesCS7B01G074700 chr1A 96.725 794 25 1 2702 3494 197634715 197633922 0.000000e+00 1321
9 TraesCS7B01G074700 chr1A 96.478 795 27 1 2699 3492 69549342 69550136 0.000000e+00 1312
10 TraesCS7B01G074700 chr1A 96.106 796 31 0 2699 3494 100955462 100956257 0.000000e+00 1299
11 TraesCS7B01G074700 chr1A 79.259 1485 244 40 1017 2484 456243409 456244846 0.000000e+00 977
12 TraesCS7B01G074700 chr1B 96.236 797 28 2 2699 3494 103117346 103118141 0.000000e+00 1304
13 TraesCS7B01G074700 chr1B 96.110 797 29 2 2699 3494 596025833 596026628 0.000000e+00 1299
14 TraesCS7B01G074700 chr1B 96.115 798 28 3 2699 3494 604895458 604896254 0.000000e+00 1299
15 TraesCS7B01G074700 chr1B 78.923 1485 248 32 1017 2484 478560676 478562112 0.000000e+00 948
16 TraesCS7B01G074700 chr6B 96.120 799 29 2 2696 3494 178474110 178474906 0.000000e+00 1303
17 TraesCS7B01G074700 chr6B 79.111 967 161 27 1528 2484 86647759 86648694 2.290000e-176 628
18 TraesCS7B01G074700 chr6B 76.483 961 176 33 1539 2484 87330962 87330037 8.770000e-131 477
19 TraesCS7B01G074700 chr5B 96.222 794 28 2 2702 3494 189276179 189275387 0.000000e+00 1299
20 TraesCS7B01G074700 chr5B 79.066 1285 219 28 1024 2298 610282405 610281161 0.000000e+00 837
21 TraesCS7B01G074700 chr5B 77.562 1493 234 57 1017 2481 684085189 684086608 0.000000e+00 808
22 TraesCS7B01G074700 chr5B 77.266 1456 264 44 1024 2468 610205896 610204497 0.000000e+00 793
23 TraesCS7B01G074700 chr1D 79.018 1487 244 40 1017 2484 355668402 355669839 0.000000e+00 955
24 TraesCS7B01G074700 chr4A 78.413 1487 241 46 1020 2484 713606000 713604572 0.000000e+00 894
25 TraesCS7B01G074700 chr4A 77.367 1489 256 50 1017 2481 626954581 626953150 0.000000e+00 808
26 TraesCS7B01G074700 chr5A 79.269 1341 215 37 1026 2351 617097304 617096012 0.000000e+00 878
27 TraesCS7B01G074700 chr2B 77.173 1507 270 42 994 2484 682258525 682259973 0.000000e+00 809
28 TraesCS7B01G074700 chr5D 78.633 1273 216 33 1024 2283 494079147 494077918 0.000000e+00 793
29 TraesCS7B01G074700 chr2A 77.110 1481 268 41 1017 2484 709173408 709174830 0.000000e+00 791
30 TraesCS7B01G074700 chr6D 76.713 1503 249 58 1031 2484 37117833 37116383 0.000000e+00 743
31 TraesCS7B01G074700 chr6D 80.420 858 134 28 1637 2485 37226524 37225692 1.060000e-174 623
32 TraesCS7B01G074700 chr2D 79.868 909 141 21 1017 1913 570081673 570082551 8.230000e-176 627
33 TraesCS7B01G074700 chr2D 76.650 985 174 44 1379 2338 9873660 9874613 8.710000e-136 494


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G074700 chr7B 84323263 84326756 3493 False 6453.0 6453 100.0000 1 3494 1 chr7B.!!$F1 3493
1 TraesCS7B01G074700 chr7D 123156045 123158430 2385 False 3664.0 3664 94.3450 243 2640 1 chr7D.!!$F2 2397
2 TraesCS7B01G074700 chr7D 19399624 19401055 1431 False 894.0 894 78.3960 993 2484 1 chr7D.!!$F1 1491
3 TraesCS7B01G074700 chr7A 125993355 125995378 2023 True 1587.5 2715 93.8335 507 2495 2 chr7A.!!$R2 1988
4 TraesCS7B01G074700 chr7A 514087721 514088516 795 False 1304.0 1304 96.2360 2699 3494 1 chr7A.!!$F2 795
5 TraesCS7B01G074700 chr1A 197633922 197634715 793 True 1321.0 1321 96.7250 2702 3494 1 chr1A.!!$R1 792
6 TraesCS7B01G074700 chr1A 69549342 69550136 794 False 1312.0 1312 96.4780 2699 3492 1 chr1A.!!$F1 793
7 TraesCS7B01G074700 chr1A 100955462 100956257 795 False 1299.0 1299 96.1060 2699 3494 1 chr1A.!!$F2 795
8 TraesCS7B01G074700 chr1A 456243409 456244846 1437 False 977.0 977 79.2590 1017 2484 1 chr1A.!!$F3 1467
9 TraesCS7B01G074700 chr1B 103117346 103118141 795 False 1304.0 1304 96.2360 2699 3494 1 chr1B.!!$F1 795
10 TraesCS7B01G074700 chr1B 596025833 596026628 795 False 1299.0 1299 96.1100 2699 3494 1 chr1B.!!$F3 795
11 TraesCS7B01G074700 chr1B 604895458 604896254 796 False 1299.0 1299 96.1150 2699 3494 1 chr1B.!!$F4 795
12 TraesCS7B01G074700 chr1B 478560676 478562112 1436 False 948.0 948 78.9230 1017 2484 1 chr1B.!!$F2 1467
13 TraesCS7B01G074700 chr6B 178474110 178474906 796 False 1303.0 1303 96.1200 2696 3494 1 chr6B.!!$F2 798
14 TraesCS7B01G074700 chr6B 86647759 86648694 935 False 628.0 628 79.1110 1528 2484 1 chr6B.!!$F1 956
15 TraesCS7B01G074700 chr6B 87330037 87330962 925 True 477.0 477 76.4830 1539 2484 1 chr6B.!!$R1 945
16 TraesCS7B01G074700 chr5B 189275387 189276179 792 True 1299.0 1299 96.2220 2702 3494 1 chr5B.!!$R1 792
17 TraesCS7B01G074700 chr5B 610281161 610282405 1244 True 837.0 837 79.0660 1024 2298 1 chr5B.!!$R3 1274
18 TraesCS7B01G074700 chr5B 684085189 684086608 1419 False 808.0 808 77.5620 1017 2481 1 chr5B.!!$F1 1464
19 TraesCS7B01G074700 chr5B 610204497 610205896 1399 True 793.0 793 77.2660 1024 2468 1 chr5B.!!$R2 1444
20 TraesCS7B01G074700 chr1D 355668402 355669839 1437 False 955.0 955 79.0180 1017 2484 1 chr1D.!!$F1 1467
21 TraesCS7B01G074700 chr4A 713604572 713606000 1428 True 894.0 894 78.4130 1020 2484 1 chr4A.!!$R2 1464
22 TraesCS7B01G074700 chr4A 626953150 626954581 1431 True 808.0 808 77.3670 1017 2481 1 chr4A.!!$R1 1464
23 TraesCS7B01G074700 chr5A 617096012 617097304 1292 True 878.0 878 79.2690 1026 2351 1 chr5A.!!$R1 1325
24 TraesCS7B01G074700 chr2B 682258525 682259973 1448 False 809.0 809 77.1730 994 2484 1 chr2B.!!$F1 1490
25 TraesCS7B01G074700 chr5D 494077918 494079147 1229 True 793.0 793 78.6330 1024 2283 1 chr5D.!!$R1 1259
26 TraesCS7B01G074700 chr2A 709173408 709174830 1422 False 791.0 791 77.1100 1017 2484 1 chr2A.!!$F1 1467
27 TraesCS7B01G074700 chr6D 37116383 37117833 1450 True 743.0 743 76.7130 1031 2484 1 chr6D.!!$R1 1453
28 TraesCS7B01G074700 chr6D 37225692 37226524 832 True 623.0 623 80.4200 1637 2485 1 chr6D.!!$R2 848
29 TraesCS7B01G074700 chr2D 570081673 570082551 878 False 627.0 627 79.8680 1017 1913 1 chr2D.!!$F2 896
30 TraesCS7B01G074700 chr2D 9873660 9874613 953 False 494.0 494 76.6500 1379 2338 1 chr2D.!!$F1 959

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.106719 CGGTCCAGGCCCATGTATTT 60.107 55.000 0.00 0.00 0.0 1.40 F
754 770 0.532573 CTCGTCAGCTAGGGAAAGCA 59.467 55.000 0.00 0.00 45.3 3.91 F
993 1044 1.297364 GGTTACTGTAGGCCGGCAA 59.703 57.895 30.85 13.47 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1029 1080 1.645710 ACGGGAAGAAGAGGATGTGT 58.354 50.0 0.00 0.0 0.00 3.72 R
2142 2312 1.115467 CCTCCAGCGTAGAGTTCCAT 58.885 55.0 0.97 0.0 0.00 3.41 R
2561 2752 2.298411 ACTTTGGCACACAAGCAAAG 57.702 45.0 0.00 0.0 40.82 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.799678 GTCACGATCCTCTATACATGTGG 58.200 47.826 9.11 0.00 0.00 4.17
23 24 3.826729 TCACGATCCTCTATACATGTGGG 59.173 47.826 9.11 3.18 0.00 4.61
24 25 3.574396 CACGATCCTCTATACATGTGGGT 59.426 47.826 9.11 0.00 0.00 4.51
25 26 3.827302 ACGATCCTCTATACATGTGGGTC 59.173 47.826 9.11 5.45 0.00 4.46
26 27 3.826729 CGATCCTCTATACATGTGGGTCA 59.173 47.826 9.11 0.00 30.89 4.02
27 28 4.464244 CGATCCTCTATACATGTGGGTCAT 59.536 45.833 9.11 0.00 37.22 3.06
28 29 5.393569 CGATCCTCTATACATGTGGGTCATC 60.394 48.000 9.11 0.00 34.09 2.92
29 30 4.814967 TCCTCTATACATGTGGGTCATCA 58.185 43.478 9.11 0.00 34.09 3.07
30 31 5.215845 TCCTCTATACATGTGGGTCATCAA 58.784 41.667 9.11 0.00 34.09 2.57
31 32 5.070446 TCCTCTATACATGTGGGTCATCAAC 59.930 44.000 9.11 0.00 34.09 3.18
44 45 5.813080 GGTCATCAACCGCTTTATAGTTT 57.187 39.130 0.00 0.00 38.58 2.66
45 46 5.807344 GGTCATCAACCGCTTTATAGTTTC 58.193 41.667 0.00 0.00 38.58 2.78
46 47 5.353123 GGTCATCAACCGCTTTATAGTTTCA 59.647 40.000 0.00 0.00 38.58 2.69
47 48 6.038271 GGTCATCAACCGCTTTATAGTTTCAT 59.962 38.462 0.00 0.00 38.58 2.57
48 49 7.126398 GTCATCAACCGCTTTATAGTTTCATC 58.874 38.462 0.00 0.00 0.00 2.92
49 50 6.260050 TCATCAACCGCTTTATAGTTTCATCC 59.740 38.462 0.00 0.00 0.00 3.51
50 51 4.569162 TCAACCGCTTTATAGTTTCATCCG 59.431 41.667 0.00 0.00 0.00 4.18
51 52 4.133013 ACCGCTTTATAGTTTCATCCGT 57.867 40.909 0.00 0.00 0.00 4.69
52 53 5.266733 ACCGCTTTATAGTTTCATCCGTA 57.733 39.130 0.00 0.00 0.00 4.02
53 54 5.287226 ACCGCTTTATAGTTTCATCCGTAG 58.713 41.667 0.00 0.00 0.00 3.51
54 55 5.163478 ACCGCTTTATAGTTTCATCCGTAGT 60.163 40.000 0.00 0.00 0.00 2.73
55 56 5.401674 CCGCTTTATAGTTTCATCCGTAGTC 59.598 44.000 0.00 0.00 0.00 2.59
56 57 5.975344 CGCTTTATAGTTTCATCCGTAGTCA 59.025 40.000 0.00 0.00 0.00 3.41
57 58 6.474427 CGCTTTATAGTTTCATCCGTAGTCAA 59.526 38.462 0.00 0.00 0.00 3.18
58 59 7.169308 CGCTTTATAGTTTCATCCGTAGTCAAT 59.831 37.037 0.00 0.00 0.00 2.57
59 60 8.827677 GCTTTATAGTTTCATCCGTAGTCAATT 58.172 33.333 0.00 0.00 0.00 2.32
66 67 9.314321 AGTTTCATCCGTAGTCAATTATAAGTG 57.686 33.333 6.58 6.58 0.00 3.16
67 68 9.095065 GTTTCATCCGTAGTCAATTATAAGTGT 57.905 33.333 12.28 0.00 0.00 3.55
68 69 8.867112 TTCATCCGTAGTCAATTATAAGTGTC 57.133 34.615 12.28 7.35 0.00 3.67
69 70 7.136772 TCATCCGTAGTCAATTATAAGTGTCG 58.863 38.462 12.28 11.98 0.00 4.35
70 71 5.276270 TCCGTAGTCAATTATAAGTGTCGC 58.724 41.667 12.28 5.16 0.00 5.19
71 72 4.145928 CCGTAGTCAATTATAAGTGTCGCG 59.854 45.833 12.28 14.63 0.00 5.87
72 73 4.731961 CGTAGTCAATTATAAGTGTCGCGT 59.268 41.667 12.28 0.00 0.00 6.01
73 74 5.228635 CGTAGTCAATTATAAGTGTCGCGTT 59.771 40.000 12.28 0.00 0.00 4.84
74 75 6.411782 CGTAGTCAATTATAAGTGTCGCGTTA 59.588 38.462 12.28 0.00 0.00 3.18
75 76 6.564854 AGTCAATTATAAGTGTCGCGTTAC 57.435 37.500 12.28 6.70 0.00 2.50
76 77 5.517770 AGTCAATTATAAGTGTCGCGTTACC 59.482 40.000 12.28 0.00 0.00 2.85
77 78 5.517770 GTCAATTATAAGTGTCGCGTTACCT 59.482 40.000 12.28 0.00 0.00 3.08
78 79 5.745294 TCAATTATAAGTGTCGCGTTACCTC 59.255 40.000 12.28 0.00 0.00 3.85
79 80 4.700268 TTATAAGTGTCGCGTTACCTCA 57.300 40.909 5.77 0.00 0.00 3.86
80 81 2.624316 TAAGTGTCGCGTTACCTCAG 57.376 50.000 5.77 0.00 0.00 3.35
81 82 0.666577 AAGTGTCGCGTTACCTCAGC 60.667 55.000 5.77 0.00 0.00 4.26
82 83 1.080705 GTGTCGCGTTACCTCAGCT 60.081 57.895 5.77 0.00 0.00 4.24
83 84 1.080772 TGTCGCGTTACCTCAGCTG 60.081 57.895 7.63 7.63 0.00 4.24
84 85 2.126071 TCGCGTTACCTCAGCTGC 60.126 61.111 9.47 0.00 0.00 5.25
85 86 3.545481 CGCGTTACCTCAGCTGCG 61.545 66.667 9.47 1.71 39.57 5.18
86 87 3.188786 GCGTTACCTCAGCTGCGG 61.189 66.667 21.25 21.25 0.00 5.69
87 88 2.261671 CGTTACCTCAGCTGCGGT 59.738 61.111 29.94 29.94 36.95 5.68
88 89 1.805945 CGTTACCTCAGCTGCGGTC 60.806 63.158 30.90 17.01 34.54 4.79
89 90 1.448013 GTTACCTCAGCTGCGGTCC 60.448 63.158 30.90 18.86 34.54 4.46
90 91 1.911269 TTACCTCAGCTGCGGTCCA 60.911 57.895 30.90 16.69 34.54 4.02
91 92 1.888436 TTACCTCAGCTGCGGTCCAG 61.888 60.000 30.90 11.19 44.67 3.86
92 93 4.463879 CCTCAGCTGCGGTCCAGG 62.464 72.222 14.89 8.51 42.03 4.45
100 101 3.792736 GCGGTCCAGGCCCATGTA 61.793 66.667 0.00 0.00 0.00 2.29
101 102 3.120086 GCGGTCCAGGCCCATGTAT 62.120 63.158 0.00 0.00 0.00 2.29
102 103 1.531748 CGGTCCAGGCCCATGTATT 59.468 57.895 0.00 0.00 0.00 1.89
103 104 0.106719 CGGTCCAGGCCCATGTATTT 60.107 55.000 0.00 0.00 0.00 1.40
104 105 1.684869 CGGTCCAGGCCCATGTATTTT 60.685 52.381 0.00 0.00 0.00 1.82
105 106 2.466846 GGTCCAGGCCCATGTATTTTT 58.533 47.619 0.00 0.00 0.00 1.94
106 107 2.168313 GGTCCAGGCCCATGTATTTTTG 59.832 50.000 0.00 0.00 0.00 2.44
107 108 2.168313 GTCCAGGCCCATGTATTTTTGG 59.832 50.000 0.00 0.00 0.00 3.28
108 109 2.043664 TCCAGGCCCATGTATTTTTGGA 59.956 45.455 0.00 0.00 34.81 3.53
109 110 2.431782 CCAGGCCCATGTATTTTTGGAG 59.568 50.000 0.00 0.00 34.81 3.86
110 111 3.099141 CAGGCCCATGTATTTTTGGAGT 58.901 45.455 0.00 0.00 34.81 3.85
111 112 4.277476 CAGGCCCATGTATTTTTGGAGTA 58.723 43.478 0.00 0.00 34.81 2.59
112 113 4.709397 CAGGCCCATGTATTTTTGGAGTAA 59.291 41.667 0.00 0.00 34.81 2.24
113 114 5.186797 CAGGCCCATGTATTTTTGGAGTAAA 59.813 40.000 0.00 0.00 34.81 2.01
114 115 5.782845 AGGCCCATGTATTTTTGGAGTAAAA 59.217 36.000 0.00 0.00 36.51 1.52
115 116 6.070824 AGGCCCATGTATTTTTGGAGTAAAAG 60.071 38.462 0.00 0.00 39.29 2.27
116 117 6.106003 GCCCATGTATTTTTGGAGTAAAAGG 58.894 40.000 0.00 0.00 39.29 3.11
117 118 6.295632 GCCCATGTATTTTTGGAGTAAAAGGT 60.296 38.462 0.00 0.00 39.29 3.50
118 119 7.676004 CCCATGTATTTTTGGAGTAAAAGGTT 58.324 34.615 0.00 0.00 39.29 3.50
119 120 8.808092 CCCATGTATTTTTGGAGTAAAAGGTTA 58.192 33.333 0.00 0.00 39.29 2.85
120 121 9.634163 CCATGTATTTTTGGAGTAAAAGGTTAC 57.366 33.333 0.00 0.00 39.29 2.50
125 126 8.601845 ATTTTTGGAGTAAAAGGTTACAATGC 57.398 30.769 0.00 0.00 41.88 3.56
126 127 5.365403 TTGGAGTAAAAGGTTACAATGCG 57.635 39.130 0.00 0.00 41.88 4.73
127 128 3.754323 TGGAGTAAAAGGTTACAATGCGG 59.246 43.478 0.00 0.00 41.88 5.69
128 129 3.754850 GGAGTAAAAGGTTACAATGCGGT 59.245 43.478 0.00 0.00 41.88 5.68
129 130 4.216902 GGAGTAAAAGGTTACAATGCGGTT 59.783 41.667 0.00 0.00 41.88 4.44
130 131 5.278610 GGAGTAAAAGGTTACAATGCGGTTT 60.279 40.000 0.00 0.00 41.88 3.27
131 132 6.151663 AGTAAAAGGTTACAATGCGGTTTT 57.848 33.333 0.00 0.00 41.88 2.43
132 133 6.575267 AGTAAAAGGTTACAATGCGGTTTTT 58.425 32.000 0.00 0.00 41.88 1.94
133 134 7.714703 AGTAAAAGGTTACAATGCGGTTTTTA 58.285 30.769 0.00 0.00 41.88 1.52
134 135 7.863877 AGTAAAAGGTTACAATGCGGTTTTTAG 59.136 33.333 0.00 0.00 41.88 1.85
135 136 6.394025 AAAGGTTACAATGCGGTTTTTAGA 57.606 33.333 0.00 0.00 0.00 2.10
136 137 5.622770 AGGTTACAATGCGGTTTTTAGAG 57.377 39.130 0.00 0.00 0.00 2.43
137 138 5.067954 AGGTTACAATGCGGTTTTTAGAGT 58.932 37.500 0.00 0.00 0.00 3.24
138 139 6.232692 AGGTTACAATGCGGTTTTTAGAGTA 58.767 36.000 0.00 0.00 0.00 2.59
139 140 6.882678 AGGTTACAATGCGGTTTTTAGAGTAT 59.117 34.615 0.00 0.00 0.00 2.12
140 141 6.964934 GGTTACAATGCGGTTTTTAGAGTATG 59.035 38.462 0.00 0.00 0.00 2.39
141 142 7.361457 GGTTACAATGCGGTTTTTAGAGTATGT 60.361 37.037 0.00 0.00 0.00 2.29
142 143 6.178239 ACAATGCGGTTTTTAGAGTATGTC 57.822 37.500 0.00 0.00 0.00 3.06
143 144 5.938125 ACAATGCGGTTTTTAGAGTATGTCT 59.062 36.000 0.00 0.00 39.59 3.41
144 145 6.430000 ACAATGCGGTTTTTAGAGTATGTCTT 59.570 34.615 0.00 0.00 36.64 3.01
145 146 7.040686 ACAATGCGGTTTTTAGAGTATGTCTTT 60.041 33.333 0.00 0.00 36.64 2.52
146 147 8.447833 CAATGCGGTTTTTAGAGTATGTCTTTA 58.552 33.333 0.00 0.00 36.64 1.85
147 148 7.591006 TGCGGTTTTTAGAGTATGTCTTTAG 57.409 36.000 0.00 0.00 36.64 1.85
148 149 7.380536 TGCGGTTTTTAGAGTATGTCTTTAGA 58.619 34.615 0.00 0.00 36.64 2.10
149 150 7.544566 TGCGGTTTTTAGAGTATGTCTTTAGAG 59.455 37.037 0.00 0.00 36.64 2.43
150 151 7.758528 GCGGTTTTTAGAGTATGTCTTTAGAGA 59.241 37.037 0.00 0.00 36.64 3.10
151 152 9.291664 CGGTTTTTAGAGTATGTCTTTAGAGAG 57.708 37.037 0.00 0.00 36.64 3.20
152 153 9.589111 GGTTTTTAGAGTATGTCTTTAGAGAGG 57.411 37.037 0.00 0.00 36.64 3.69
158 159 8.918202 AGAGTATGTCTTTAGAGAGGATACTG 57.082 38.462 14.94 0.00 39.34 2.74
159 160 8.719596 AGAGTATGTCTTTAGAGAGGATACTGA 58.280 37.037 14.94 0.00 39.34 3.41
177 178 8.880750 GGATACTGACTTAAGGTTGTATTTGAC 58.119 37.037 7.53 1.24 32.42 3.18
178 179 9.431887 GATACTGACTTAAGGTTGTATTTGACA 57.568 33.333 7.53 0.00 35.78 3.58
179 180 9.787435 ATACTGACTTAAGGTTGTATTTGACAA 57.213 29.630 7.53 0.00 46.03 3.18
189 190 5.720371 TTGTATTTGACAACCCATCCTTG 57.280 39.130 0.00 0.00 43.30 3.61
190 191 4.735369 TGTATTTGACAACCCATCCTTGT 58.265 39.130 0.00 0.00 34.15 3.16
191 192 5.144100 TGTATTTGACAACCCATCCTTGTT 58.856 37.500 0.00 0.00 34.15 2.83
192 193 4.871933 ATTTGACAACCCATCCTTGTTC 57.128 40.909 0.00 0.00 31.83 3.18
193 194 3.593442 TTGACAACCCATCCTTGTTCT 57.407 42.857 0.00 0.00 31.83 3.01
194 195 4.715534 TTGACAACCCATCCTTGTTCTA 57.284 40.909 0.00 0.00 31.83 2.10
195 196 4.286297 TGACAACCCATCCTTGTTCTAG 57.714 45.455 0.00 0.00 31.83 2.43
196 197 3.010420 GACAACCCATCCTTGTTCTAGC 58.990 50.000 0.00 0.00 31.83 3.42
197 198 2.644798 ACAACCCATCCTTGTTCTAGCT 59.355 45.455 0.00 0.00 0.00 3.32
198 199 3.012518 CAACCCATCCTTGTTCTAGCTG 58.987 50.000 0.00 0.00 0.00 4.24
199 200 2.551270 ACCCATCCTTGTTCTAGCTGA 58.449 47.619 0.00 0.00 0.00 4.26
200 201 2.912956 ACCCATCCTTGTTCTAGCTGAA 59.087 45.455 0.00 0.00 0.00 3.02
201 202 3.525199 ACCCATCCTTGTTCTAGCTGAAT 59.475 43.478 0.00 0.00 36.99 2.57
202 203 4.018050 ACCCATCCTTGTTCTAGCTGAATT 60.018 41.667 0.00 0.00 36.99 2.17
203 204 4.578105 CCCATCCTTGTTCTAGCTGAATTC 59.422 45.833 0.00 0.00 36.99 2.17
204 205 4.578105 CCATCCTTGTTCTAGCTGAATTCC 59.422 45.833 2.27 0.00 36.99 3.01
205 206 5.435291 CATCCTTGTTCTAGCTGAATTCCT 58.565 41.667 2.27 0.00 36.99 3.36
206 207 5.091261 TCCTTGTTCTAGCTGAATTCCTC 57.909 43.478 2.27 0.00 36.99 3.71
207 208 4.080863 TCCTTGTTCTAGCTGAATTCCTCC 60.081 45.833 2.27 0.00 36.99 4.30
208 209 4.080638 CCTTGTTCTAGCTGAATTCCTCCT 60.081 45.833 2.27 0.00 36.99 3.69
209 210 5.495640 CTTGTTCTAGCTGAATTCCTCCTT 58.504 41.667 2.27 0.00 36.99 3.36
210 211 5.505181 TGTTCTAGCTGAATTCCTCCTTT 57.495 39.130 2.27 0.00 36.99 3.11
211 212 5.248640 TGTTCTAGCTGAATTCCTCCTTTG 58.751 41.667 2.27 0.00 36.99 2.77
212 213 5.221925 TGTTCTAGCTGAATTCCTCCTTTGT 60.222 40.000 2.27 0.00 36.99 2.83
213 214 5.091261 TCTAGCTGAATTCCTCCTTTGTC 57.909 43.478 2.27 0.00 0.00 3.18
214 215 3.078891 AGCTGAATTCCTCCTTTGTCC 57.921 47.619 2.27 0.00 0.00 4.02
215 216 2.376518 AGCTGAATTCCTCCTTTGTCCA 59.623 45.455 2.27 0.00 0.00 4.02
216 217 3.011032 AGCTGAATTCCTCCTTTGTCCAT 59.989 43.478 2.27 0.00 0.00 3.41
217 218 3.379688 GCTGAATTCCTCCTTTGTCCATC 59.620 47.826 2.27 0.00 0.00 3.51
218 219 3.609853 TGAATTCCTCCTTTGTCCATCG 58.390 45.455 2.27 0.00 0.00 3.84
219 220 3.009033 TGAATTCCTCCTTTGTCCATCGT 59.991 43.478 2.27 0.00 0.00 3.73
220 221 3.721087 ATTCCTCCTTTGTCCATCGTT 57.279 42.857 0.00 0.00 0.00 3.85
221 222 4.837093 ATTCCTCCTTTGTCCATCGTTA 57.163 40.909 0.00 0.00 0.00 3.18
222 223 4.627284 TTCCTCCTTTGTCCATCGTTAA 57.373 40.909 0.00 0.00 0.00 2.01
223 224 4.627284 TCCTCCTTTGTCCATCGTTAAA 57.373 40.909 0.00 0.00 0.00 1.52
224 225 5.174037 TCCTCCTTTGTCCATCGTTAAAT 57.826 39.130 0.00 0.00 0.00 1.40
225 226 6.302535 TCCTCCTTTGTCCATCGTTAAATA 57.697 37.500 0.00 0.00 0.00 1.40
226 227 6.110707 TCCTCCTTTGTCCATCGTTAAATAC 58.889 40.000 0.00 0.00 0.00 1.89
227 228 6.070424 TCCTCCTTTGTCCATCGTTAAATACT 60.070 38.462 0.00 0.00 0.00 2.12
228 229 6.258068 CCTCCTTTGTCCATCGTTAAATACTC 59.742 42.308 0.00 0.00 0.00 2.59
229 230 6.110707 TCCTTTGTCCATCGTTAAATACTCC 58.889 40.000 0.00 0.00 0.00 3.85
230 231 5.296035 CCTTTGTCCATCGTTAAATACTCCC 59.704 44.000 0.00 0.00 0.00 4.30
231 232 5.423704 TTGTCCATCGTTAAATACTCCCA 57.576 39.130 0.00 0.00 0.00 4.37
232 233 5.623956 TGTCCATCGTTAAATACTCCCAT 57.376 39.130 0.00 0.00 0.00 4.00
233 234 5.996644 TGTCCATCGTTAAATACTCCCATT 58.003 37.500 0.00 0.00 0.00 3.16
234 235 7.127012 TGTCCATCGTTAAATACTCCCATTA 57.873 36.000 0.00 0.00 0.00 1.90
235 236 7.214381 TGTCCATCGTTAAATACTCCCATTAG 58.786 38.462 0.00 0.00 0.00 1.73
236 237 6.649557 GTCCATCGTTAAATACTCCCATTAGG 59.350 42.308 0.00 0.00 0.00 2.69
282 283 7.885297 TGAAAACTATTCAATCTTGTGAAGGG 58.115 34.615 0.00 0.00 40.72 3.95
426 427 8.433249 AGAGATGAGGAGAATATTGCATTCTA 57.567 34.615 1.07 0.00 38.38 2.10
428 429 9.100554 GAGATGAGGAGAATATTGCATTCTATG 57.899 37.037 1.07 0.00 38.38 2.23
433 434 8.618702 AGGAGAATATTGCATTCTATGTCTTG 57.381 34.615 1.07 0.00 38.38 3.02
445 446 8.642020 GCATTCTATGTCTTGAATCAAAAACAC 58.358 33.333 11.49 1.49 31.35 3.32
459 460 8.816640 AATCAAAAACACTGGAATGTAACATC 57.183 30.769 0.00 0.00 30.75 3.06
469 470 4.806775 TGGAATGTAACATCCGAATACACG 59.193 41.667 0.00 0.00 38.63 4.49
470 471 4.318546 GGAATGTAACATCCGAATACACGC 60.319 45.833 0.00 0.00 32.80 5.34
599 602 2.018544 CAACTCACGGCGTTTGGAA 58.981 52.632 11.19 0.00 0.00 3.53
653 656 3.057526 GGGAACACTTTACATTCCTGTGC 60.058 47.826 2.50 0.00 41.48 4.57
660 663 5.120830 CACTTTACATTCCTGTGCAGTACTC 59.879 44.000 0.00 0.00 36.79 2.59
661 664 2.770164 ACATTCCTGTGCAGTACTCC 57.230 50.000 0.00 0.00 33.22 3.85
662 665 1.977854 ACATTCCTGTGCAGTACTCCA 59.022 47.619 0.00 0.00 33.22 3.86
664 667 2.768253 TTCCTGTGCAGTACTCCATG 57.232 50.000 0.00 0.00 0.00 3.66
690 696 1.076995 GGTTACCCCCTGTCATGCC 60.077 63.158 0.00 0.00 0.00 4.40
691 697 1.571773 GGTTACCCCCTGTCATGCCT 61.572 60.000 0.00 0.00 0.00 4.75
705 711 7.365028 CCCTGTCATGCCTATATATAGAAAGCA 60.365 40.741 19.51 18.97 32.41 3.91
747 763 1.974265 TCTCATCCTCGTCAGCTAGG 58.026 55.000 0.00 0.00 0.00 3.02
754 770 0.532573 CTCGTCAGCTAGGGAAAGCA 59.467 55.000 0.00 0.00 45.30 3.91
881 924 7.795047 TCTCTTGCTATAATGGTCTCATTTCA 58.205 34.615 0.00 0.00 42.90 2.69
890 933 4.371624 TGGTCTCATTTCACACCTCAAT 57.628 40.909 0.00 0.00 0.00 2.57
891 934 4.074259 TGGTCTCATTTCACACCTCAATG 58.926 43.478 0.00 0.00 0.00 2.82
926 969 2.290367 TGACAATTTCAACTCGTGGCAG 59.710 45.455 0.00 0.00 0.00 4.85
943 986 5.901232 TGGCAGAGACTCACTCAGACAGT 62.901 52.174 5.02 0.00 43.57 3.55
947 997 1.885887 AGACTCACTCAGACAGTCAGC 59.114 52.381 2.66 0.00 39.29 4.26
949 999 3.078097 GACTCACTCAGACAGTCAGCTA 58.922 50.000 2.66 0.00 37.17 3.32
993 1044 1.297364 GGTTACTGTAGGCCGGCAA 59.703 57.895 30.85 13.47 0.00 4.52
2164 2334 1.605058 GAACTCTACGCTGGAGGCCA 61.605 60.000 5.01 0.00 37.74 5.36
2421 2612 1.831736 GTCAAAGCTAGGAGGGCAGTA 59.168 52.381 0.00 0.00 0.00 2.74
2496 2687 1.930908 CTCGCCGACGGACTTAAGGT 61.931 60.000 20.50 0.00 40.63 3.50
2505 2696 2.148768 CGGACTTAAGGTTGGTTGGAC 58.851 52.381 7.53 0.00 0.00 4.02
2528 2719 0.099082 AGACGTCGGATTCTTCGCTC 59.901 55.000 10.46 0.00 0.00 5.03
2538 2729 0.037697 TTCTTCGCTCGGCAGCTTAA 60.038 50.000 7.22 2.09 44.40 1.85
2569 2760 0.875059 GGTCTTCCGTCCTTTGCTTG 59.125 55.000 0.00 0.00 0.00 4.01
2584 2775 1.547820 TGCTTGTGTGCCAAAGTTGAA 59.452 42.857 0.00 0.00 31.20 2.69
2641 2832 8.874745 AATTTCTTGATGTCGTTGTAATAACG 57.125 30.769 5.89 5.89 44.29 3.18
2642 2833 6.397831 TTCTTGATGTCGTTGTAATAACGG 57.602 37.500 11.60 0.00 43.24 4.44
2643 2834 5.712004 TCTTGATGTCGTTGTAATAACGGA 58.288 37.500 11.60 0.89 43.24 4.69
2644 2835 6.157904 TCTTGATGTCGTTGTAATAACGGAA 58.842 36.000 11.60 2.16 43.24 4.30
2645 2836 6.645827 TCTTGATGTCGTTGTAATAACGGAAA 59.354 34.615 11.60 0.00 43.24 3.13
2646 2837 6.782298 TGATGTCGTTGTAATAACGGAAAA 57.218 33.333 11.60 0.00 43.24 2.29
2647 2838 7.187244 TGATGTCGTTGTAATAACGGAAAAA 57.813 32.000 11.60 0.00 43.24 1.94
2648 2839 7.070798 TGATGTCGTTGTAATAACGGAAAAAC 58.929 34.615 11.60 3.82 43.24 2.43
2649 2840 6.601741 TGTCGTTGTAATAACGGAAAAACT 57.398 33.333 11.60 0.00 43.24 2.66
2650 2841 6.648502 TGTCGTTGTAATAACGGAAAAACTC 58.351 36.000 11.60 0.00 43.24 3.01
2651 2842 6.257411 TGTCGTTGTAATAACGGAAAAACTCA 59.743 34.615 11.60 0.00 43.24 3.41
2652 2843 6.571154 GTCGTTGTAATAACGGAAAAACTCAC 59.429 38.462 11.60 0.00 43.24 3.51
2653 2844 6.479660 TCGTTGTAATAACGGAAAAACTCACT 59.520 34.615 11.60 0.00 43.24 3.41
2654 2845 6.788930 CGTTGTAATAACGGAAAAACTCACTC 59.211 38.462 4.41 0.00 39.73 3.51
2655 2846 7.517101 CGTTGTAATAACGGAAAAACTCACTCA 60.517 37.037 4.41 0.00 39.73 3.41
2656 2847 7.972832 TGTAATAACGGAAAAACTCACTCAT 57.027 32.000 0.00 0.00 0.00 2.90
2657 2848 8.385898 TGTAATAACGGAAAAACTCACTCATT 57.614 30.769 0.00 0.00 0.00 2.57
2658 2849 8.842280 TGTAATAACGGAAAAACTCACTCATTT 58.158 29.630 0.00 0.00 0.00 2.32
2659 2850 9.673454 GTAATAACGGAAAAACTCACTCATTTT 57.327 29.630 0.00 0.00 0.00 1.82
2660 2851 8.574196 AATAACGGAAAAACTCACTCATTTTG 57.426 30.769 0.00 0.00 0.00 2.44
2661 2852 5.576447 ACGGAAAAACTCACTCATTTTGT 57.424 34.783 0.00 0.00 0.00 2.83
2662 2853 5.578776 ACGGAAAAACTCACTCATTTTGTC 58.421 37.500 0.00 0.00 0.00 3.18
2663 2854 5.124776 ACGGAAAAACTCACTCATTTTGTCA 59.875 36.000 0.00 0.00 0.00 3.58
2664 2855 5.455525 CGGAAAAACTCACTCATTTTGTCAC 59.544 40.000 0.00 0.00 0.00 3.67
2665 2856 5.455525 GGAAAAACTCACTCATTTTGTCACG 59.544 40.000 0.00 0.00 0.00 4.35
2666 2857 5.560966 AAAACTCACTCATTTTGTCACGT 57.439 34.783 0.00 0.00 0.00 4.49
2667 2858 6.671614 AAAACTCACTCATTTTGTCACGTA 57.328 33.333 0.00 0.00 0.00 3.57
2668 2859 6.861065 AAACTCACTCATTTTGTCACGTAT 57.139 33.333 0.00 0.00 0.00 3.06
2669 2860 5.845985 ACTCACTCATTTTGTCACGTATG 57.154 39.130 0.00 0.00 0.00 2.39
2670 2861 5.538118 ACTCACTCATTTTGTCACGTATGA 58.462 37.500 0.00 0.00 0.00 2.15
2671 2862 5.635280 ACTCACTCATTTTGTCACGTATGAG 59.365 40.000 17.96 17.96 45.92 2.90
2676 2867 7.993821 CTCATTTTGTCACGTATGAGTAGAT 57.006 36.000 13.31 0.00 39.27 1.98
2677 2868 7.755582 TCATTTTGTCACGTATGAGTAGATG 57.244 36.000 0.00 0.00 34.75 2.90
2678 2869 7.543756 TCATTTTGTCACGTATGAGTAGATGA 58.456 34.615 0.00 0.00 34.75 2.92
2679 2870 7.488150 TCATTTTGTCACGTATGAGTAGATGAC 59.512 37.037 0.00 0.00 34.75 3.06
2680 2871 5.890424 TTGTCACGTATGAGTAGATGACA 57.110 39.130 0.91 0.91 43.39 3.58
2681 2872 6.451064 TTGTCACGTATGAGTAGATGACAT 57.549 37.500 5.77 0.00 44.19 3.06
2682 2873 6.061231 TGTCACGTATGAGTAGATGACATC 57.939 41.667 7.39 7.39 41.00 3.06
2683 2874 5.588648 TGTCACGTATGAGTAGATGACATCA 59.411 40.000 17.57 0.00 41.00 3.07
2684 2875 6.139435 GTCACGTATGAGTAGATGACATCAG 58.861 44.000 17.57 0.66 37.11 2.90
2685 2876 5.823045 TCACGTATGAGTAGATGACATCAGT 59.177 40.000 17.57 6.57 0.00 3.41
2686 2877 6.990349 TCACGTATGAGTAGATGACATCAGTA 59.010 38.462 17.57 0.00 0.00 2.74
2687 2878 7.497909 TCACGTATGAGTAGATGACATCAGTAA 59.502 37.037 17.57 1.07 0.00 2.24
2688 2879 8.129211 CACGTATGAGTAGATGACATCAGTAAA 58.871 37.037 17.57 0.91 0.00 2.01
2689 2880 8.683615 ACGTATGAGTAGATGACATCAGTAAAA 58.316 33.333 17.57 0.00 0.00 1.52
2690 2881 9.516314 CGTATGAGTAGATGACATCAGTAAAAA 57.484 33.333 17.57 0.00 0.00 1.94
2723 2914 7.450014 TGGAACAATTGCATTTTTACCTCTAGA 59.550 33.333 5.05 0.00 31.92 2.43
2752 2943 1.006639 ACCCACGGATTTTGCCCTTAT 59.993 47.619 0.00 0.00 0.00 1.73
2823 3014 1.923356 ATGCCCTTTGACCGTTTGAT 58.077 45.000 0.00 0.00 0.00 2.57
2928 3119 5.221501 ACCTTTATGGGCATATCATTTGCAC 60.222 40.000 2.29 0.00 43.92 4.57
3077 3269 7.861629 TCTGAACATCCTGATACCTTATTTGT 58.138 34.615 0.00 0.00 0.00 2.83
3316 3511 9.116067 CCTCGGGTACTTTAAATGATGATTTTA 57.884 33.333 0.00 0.00 33.63 1.52
3358 3554 6.627395 TGCCCATAAAGGTAATGTTTATCG 57.373 37.500 0.00 0.00 34.66 2.92
3453 3649 0.673644 CGGTCAAAGGGCATTCGAGT 60.674 55.000 0.00 0.00 0.00 4.18
3487 3683 5.068591 GGAAAAAGTAAGGGCAAAACTGAGA 59.931 40.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.321304 CCCACATGTATAGAGGATCGTGAC 60.321 50.000 0.00 0.00 42.67 3.67
3 4 3.827302 GACCCACATGTATAGAGGATCGT 59.173 47.826 0.00 0.00 42.67 3.73
4 5 3.826729 TGACCCACATGTATAGAGGATCG 59.173 47.826 0.00 0.00 42.67 3.69
6 7 5.406163 TGATGACCCACATGTATAGAGGAT 58.594 41.667 0.00 0.00 39.56 3.24
7 8 4.814967 TGATGACCCACATGTATAGAGGA 58.185 43.478 0.00 0.00 39.56 3.71
8 9 5.300752 GTTGATGACCCACATGTATAGAGG 58.699 45.833 0.00 0.00 39.56 3.69
9 10 5.300752 GGTTGATGACCCACATGTATAGAG 58.699 45.833 0.00 0.00 43.06 2.43
10 11 4.202212 CGGTTGATGACCCACATGTATAGA 60.202 45.833 0.00 0.00 46.35 1.98
11 12 4.058124 CGGTTGATGACCCACATGTATAG 58.942 47.826 0.00 0.00 46.35 1.31
12 13 3.742954 GCGGTTGATGACCCACATGTATA 60.743 47.826 0.00 0.00 46.35 1.47
13 14 2.917933 CGGTTGATGACCCACATGTAT 58.082 47.619 0.00 0.00 46.35 2.29
14 15 1.677518 GCGGTTGATGACCCACATGTA 60.678 52.381 0.00 0.00 46.35 2.29
15 16 0.960364 GCGGTTGATGACCCACATGT 60.960 55.000 0.00 0.00 46.35 3.21
16 17 0.677731 AGCGGTTGATGACCCACATG 60.678 55.000 0.00 0.00 46.35 3.21
17 18 0.038166 AAGCGGTTGATGACCCACAT 59.962 50.000 0.00 0.00 46.35 3.21
18 19 0.179004 AAAGCGGTTGATGACCCACA 60.179 50.000 0.00 0.00 46.35 4.17
19 20 1.816074 TAAAGCGGTTGATGACCCAC 58.184 50.000 0.00 0.00 46.35 4.61
20 21 2.799126 ATAAAGCGGTTGATGACCCA 57.201 45.000 0.00 0.00 46.35 4.51
21 22 3.805207 ACTATAAAGCGGTTGATGACCC 58.195 45.455 7.49 0.00 46.35 4.46
22 23 5.353123 TGAAACTATAAAGCGGTTGATGACC 59.647 40.000 7.49 0.00 45.55 4.02
23 24 6.417191 TGAAACTATAAAGCGGTTGATGAC 57.583 37.500 7.49 0.00 0.00 3.06
24 25 6.260050 GGATGAAACTATAAAGCGGTTGATGA 59.740 38.462 7.49 0.00 0.00 2.92
25 26 6.430451 GGATGAAACTATAAAGCGGTTGATG 58.570 40.000 7.49 0.74 0.00 3.07
26 27 5.236478 CGGATGAAACTATAAAGCGGTTGAT 59.764 40.000 0.00 0.39 0.00 2.57
27 28 4.569162 CGGATGAAACTATAAAGCGGTTGA 59.431 41.667 0.00 0.00 0.00 3.18
28 29 4.331717 ACGGATGAAACTATAAAGCGGTTG 59.668 41.667 0.00 0.00 0.00 3.77
29 30 4.510571 ACGGATGAAACTATAAAGCGGTT 58.489 39.130 0.00 0.00 0.00 4.44
30 31 4.133013 ACGGATGAAACTATAAAGCGGT 57.867 40.909 0.00 0.00 0.00 5.68
31 32 5.287226 ACTACGGATGAAACTATAAAGCGG 58.713 41.667 0.00 0.00 0.00 5.52
32 33 5.975344 TGACTACGGATGAAACTATAAAGCG 59.025 40.000 0.00 0.00 0.00 4.68
33 34 7.766219 TTGACTACGGATGAAACTATAAAGC 57.234 36.000 0.00 0.00 0.00 3.51
40 41 9.314321 CACTTATAATTGACTACGGATGAAACT 57.686 33.333 0.00 0.00 0.00 2.66
41 42 9.095065 ACACTTATAATTGACTACGGATGAAAC 57.905 33.333 9.59 0.00 0.00 2.78
42 43 9.309516 GACACTTATAATTGACTACGGATGAAA 57.690 33.333 9.59 0.00 0.00 2.69
43 44 7.646526 CGACACTTATAATTGACTACGGATGAA 59.353 37.037 9.59 0.00 0.00 2.57
44 45 7.136772 CGACACTTATAATTGACTACGGATGA 58.863 38.462 9.59 0.00 0.00 2.92
45 46 6.129168 GCGACACTTATAATTGACTACGGATG 60.129 42.308 9.59 0.00 0.00 3.51
46 47 5.919141 GCGACACTTATAATTGACTACGGAT 59.081 40.000 9.59 0.00 0.00 4.18
47 48 5.276270 GCGACACTTATAATTGACTACGGA 58.724 41.667 9.59 0.00 0.00 4.69
48 49 4.145928 CGCGACACTTATAATTGACTACGG 59.854 45.833 0.00 0.00 0.00 4.02
49 50 4.731961 ACGCGACACTTATAATTGACTACG 59.268 41.667 15.93 11.15 0.00 3.51
50 51 6.564854 AACGCGACACTTATAATTGACTAC 57.435 37.500 15.93 0.00 0.00 2.73
51 52 6.692681 GGTAACGCGACACTTATAATTGACTA 59.307 38.462 15.93 0.00 0.00 2.59
52 53 5.517770 GGTAACGCGACACTTATAATTGACT 59.482 40.000 15.93 0.00 0.00 3.41
53 54 5.517770 AGGTAACGCGACACTTATAATTGAC 59.482 40.000 15.93 2.98 46.39 3.18
54 55 5.653507 AGGTAACGCGACACTTATAATTGA 58.346 37.500 15.93 0.00 46.39 2.57
55 56 5.517411 TGAGGTAACGCGACACTTATAATTG 59.483 40.000 15.93 1.51 46.39 2.32
56 57 5.653507 TGAGGTAACGCGACACTTATAATT 58.346 37.500 15.93 0.00 46.39 1.40
57 58 5.252969 TGAGGTAACGCGACACTTATAAT 57.747 39.130 15.93 0.00 46.39 1.28
58 59 4.665212 CTGAGGTAACGCGACACTTATAA 58.335 43.478 15.93 0.00 46.39 0.98
59 60 3.488047 GCTGAGGTAACGCGACACTTATA 60.488 47.826 15.93 0.00 46.39 0.98
60 61 2.734492 GCTGAGGTAACGCGACACTTAT 60.734 50.000 15.93 0.42 46.39 1.73
61 62 1.401931 GCTGAGGTAACGCGACACTTA 60.402 52.381 15.93 0.00 46.39 2.24
62 63 0.666577 GCTGAGGTAACGCGACACTT 60.667 55.000 15.93 6.09 46.39 3.16
63 64 1.080705 GCTGAGGTAACGCGACACT 60.081 57.895 15.93 4.91 46.39 3.55
64 65 1.080705 AGCTGAGGTAACGCGACAC 60.081 57.895 15.93 9.96 46.39 3.67
65 66 1.080772 CAGCTGAGGTAACGCGACA 60.081 57.895 15.93 0.00 46.39 4.35
66 67 2.445438 GCAGCTGAGGTAACGCGAC 61.445 63.158 20.43 0.00 46.39 5.19
67 68 2.126071 GCAGCTGAGGTAACGCGA 60.126 61.111 20.43 0.00 46.39 5.87
68 69 3.545481 CGCAGCTGAGGTAACGCG 61.545 66.667 20.43 3.53 46.39 6.01
69 70 3.188786 CCGCAGCTGAGGTAACGC 61.189 66.667 26.79 3.18 46.39 4.84
70 71 2.261671 ACCGCAGCTGAGGTAACG 59.738 61.111 37.03 19.82 46.49 3.18
75 76 4.463879 CCTGGACCGCAGCTGAGG 62.464 72.222 32.13 32.13 41.06 3.86
83 84 2.624674 AATACATGGGCCTGGACCGC 62.625 60.000 15.37 0.00 29.56 5.68
84 85 0.106719 AAATACATGGGCCTGGACCG 60.107 55.000 15.37 2.46 29.56 4.79
85 86 2.159179 AAAATACATGGGCCTGGACC 57.841 50.000 13.16 13.16 0.00 4.46
86 87 2.168313 CCAAAAATACATGGGCCTGGAC 59.832 50.000 4.53 0.00 32.87 4.02
87 88 2.043664 TCCAAAAATACATGGGCCTGGA 59.956 45.455 4.53 2.77 37.31 3.86
88 89 2.431782 CTCCAAAAATACATGGGCCTGG 59.568 50.000 4.53 0.00 37.31 4.45
89 90 3.099141 ACTCCAAAAATACATGGGCCTG 58.901 45.455 4.53 3.00 37.31 4.85
90 91 3.473113 ACTCCAAAAATACATGGGCCT 57.527 42.857 4.53 0.00 37.31 5.19
91 92 5.669164 TTTACTCCAAAAATACATGGGCC 57.331 39.130 0.00 0.00 37.31 5.80
92 93 6.106003 CCTTTTACTCCAAAAATACATGGGC 58.894 40.000 0.00 0.00 35.71 5.36
93 94 7.239763 ACCTTTTACTCCAAAAATACATGGG 57.760 36.000 0.00 0.00 35.71 4.00
94 95 9.634163 GTAACCTTTTACTCCAAAAATACATGG 57.366 33.333 0.00 0.00 35.71 3.66
99 100 9.699703 GCATTGTAACCTTTTACTCCAAAAATA 57.300 29.630 0.00 0.00 38.78 1.40
100 101 7.383843 CGCATTGTAACCTTTTACTCCAAAAAT 59.616 33.333 0.00 0.00 38.78 1.82
101 102 6.697892 CGCATTGTAACCTTTTACTCCAAAAA 59.302 34.615 0.00 0.00 38.78 1.94
102 103 6.210078 CGCATTGTAACCTTTTACTCCAAAA 58.790 36.000 0.00 0.00 38.78 2.44
103 104 5.278561 CCGCATTGTAACCTTTTACTCCAAA 60.279 40.000 0.00 0.00 38.78 3.28
104 105 4.216687 CCGCATTGTAACCTTTTACTCCAA 59.783 41.667 0.00 0.00 38.78 3.53
105 106 3.754323 CCGCATTGTAACCTTTTACTCCA 59.246 43.478 0.00 0.00 38.78 3.86
106 107 3.754850 ACCGCATTGTAACCTTTTACTCC 59.245 43.478 0.00 0.00 38.78 3.85
107 108 5.366829 AACCGCATTGTAACCTTTTACTC 57.633 39.130 0.00 0.00 38.78 2.59
108 109 5.777850 AAACCGCATTGTAACCTTTTACT 57.222 34.783 0.00 0.00 38.78 2.24
109 110 6.831727 AAAAACCGCATTGTAACCTTTTAC 57.168 33.333 0.00 0.00 38.51 2.01
110 111 7.938715 TCTAAAAACCGCATTGTAACCTTTTA 58.061 30.769 0.00 0.00 0.00 1.52
111 112 6.807789 TCTAAAAACCGCATTGTAACCTTTT 58.192 32.000 0.00 0.00 0.00 2.27
112 113 6.040054 ACTCTAAAAACCGCATTGTAACCTTT 59.960 34.615 0.00 0.00 0.00 3.11
113 114 5.533528 ACTCTAAAAACCGCATTGTAACCTT 59.466 36.000 0.00 0.00 0.00 3.50
114 115 5.067954 ACTCTAAAAACCGCATTGTAACCT 58.932 37.500 0.00 0.00 0.00 3.50
115 116 5.366829 ACTCTAAAAACCGCATTGTAACC 57.633 39.130 0.00 0.00 0.00 2.85
116 117 7.524065 ACATACTCTAAAAACCGCATTGTAAC 58.476 34.615 0.00 0.00 0.00 2.50
117 118 7.604927 AGACATACTCTAAAAACCGCATTGTAA 59.395 33.333 0.00 0.00 0.00 2.41
118 119 7.101054 AGACATACTCTAAAAACCGCATTGTA 58.899 34.615 0.00 0.00 0.00 2.41
119 120 5.938125 AGACATACTCTAAAAACCGCATTGT 59.062 36.000 0.00 0.00 0.00 2.71
120 121 6.422776 AGACATACTCTAAAAACCGCATTG 57.577 37.500 0.00 0.00 0.00 2.82
121 122 7.448748 AAAGACATACTCTAAAAACCGCATT 57.551 32.000 0.00 0.00 0.00 3.56
122 123 8.038944 TCTAAAGACATACTCTAAAAACCGCAT 58.961 33.333 0.00 0.00 0.00 4.73
123 124 7.380536 TCTAAAGACATACTCTAAAAACCGCA 58.619 34.615 0.00 0.00 0.00 5.69
124 125 7.758528 TCTCTAAAGACATACTCTAAAAACCGC 59.241 37.037 0.00 0.00 0.00 5.68
125 126 9.291664 CTCTCTAAAGACATACTCTAAAAACCG 57.708 37.037 0.00 0.00 0.00 4.44
126 127 9.589111 CCTCTCTAAAGACATACTCTAAAAACC 57.411 37.037 0.00 0.00 0.00 3.27
133 134 8.719596 TCAGTATCCTCTCTAAAGACATACTCT 58.280 37.037 0.00 0.00 33.76 3.24
134 135 8.780249 GTCAGTATCCTCTCTAAAGACATACTC 58.220 40.741 0.00 0.00 33.76 2.59
135 136 8.499406 AGTCAGTATCCTCTCTAAAGACATACT 58.501 37.037 0.00 0.00 35.09 2.12
136 137 8.685838 AGTCAGTATCCTCTCTAAAGACATAC 57.314 38.462 0.00 0.00 0.00 2.39
138 139 9.702253 TTAAGTCAGTATCCTCTCTAAAGACAT 57.298 33.333 0.00 0.00 0.00 3.06
139 140 9.179909 CTTAAGTCAGTATCCTCTCTAAAGACA 57.820 37.037 0.00 0.00 0.00 3.41
140 141 8.626526 CCTTAAGTCAGTATCCTCTCTAAAGAC 58.373 40.741 0.97 0.00 0.00 3.01
141 142 8.337739 ACCTTAAGTCAGTATCCTCTCTAAAGA 58.662 37.037 0.97 0.00 0.00 2.52
142 143 8.528044 ACCTTAAGTCAGTATCCTCTCTAAAG 57.472 38.462 0.97 0.00 0.00 1.85
143 144 8.750298 CAACCTTAAGTCAGTATCCTCTCTAAA 58.250 37.037 0.97 0.00 0.00 1.85
144 145 7.894364 ACAACCTTAAGTCAGTATCCTCTCTAA 59.106 37.037 0.97 0.00 0.00 2.10
145 146 7.411808 ACAACCTTAAGTCAGTATCCTCTCTA 58.588 38.462 0.97 0.00 0.00 2.43
146 147 6.257586 ACAACCTTAAGTCAGTATCCTCTCT 58.742 40.000 0.97 0.00 0.00 3.10
147 148 6.532988 ACAACCTTAAGTCAGTATCCTCTC 57.467 41.667 0.97 0.00 0.00 3.20
148 149 8.611051 AATACAACCTTAAGTCAGTATCCTCT 57.389 34.615 0.97 0.00 31.81 3.69
149 150 9.099454 CAAATACAACCTTAAGTCAGTATCCTC 57.901 37.037 0.97 0.00 31.81 3.71
150 151 8.822805 TCAAATACAACCTTAAGTCAGTATCCT 58.177 33.333 0.97 0.00 31.81 3.24
151 152 8.880750 GTCAAATACAACCTTAAGTCAGTATCC 58.119 37.037 0.97 0.00 31.81 2.59
152 153 9.431887 TGTCAAATACAACCTTAAGTCAGTATC 57.568 33.333 0.97 0.00 34.29 2.24
153 154 9.787435 TTGTCAAATACAACCTTAAGTCAGTAT 57.213 29.630 0.97 3.84 43.22 2.12
167 168 5.144100 ACAAGGATGGGTTGTCAAATACAA 58.856 37.500 0.00 0.00 45.90 2.41
168 169 4.735369 ACAAGGATGGGTTGTCAAATACA 58.265 39.130 0.00 0.00 32.53 2.29
169 170 5.476945 AGAACAAGGATGGGTTGTCAAATAC 59.523 40.000 0.00 0.00 37.13 1.89
170 171 5.640147 AGAACAAGGATGGGTTGTCAAATA 58.360 37.500 0.00 0.00 37.13 1.40
171 172 4.482990 AGAACAAGGATGGGTTGTCAAAT 58.517 39.130 0.00 0.00 37.13 2.32
172 173 3.909732 AGAACAAGGATGGGTTGTCAAA 58.090 40.909 0.00 0.00 37.13 2.69
173 174 3.593442 AGAACAAGGATGGGTTGTCAA 57.407 42.857 0.00 0.00 37.13 3.18
174 175 3.559171 GCTAGAACAAGGATGGGTTGTCA 60.559 47.826 0.00 0.00 37.13 3.58
175 176 3.010420 GCTAGAACAAGGATGGGTTGTC 58.990 50.000 0.00 0.00 37.13 3.18
176 177 2.644798 AGCTAGAACAAGGATGGGTTGT 59.355 45.455 0.00 0.00 39.89 3.32
177 178 3.012518 CAGCTAGAACAAGGATGGGTTG 58.987 50.000 0.00 0.00 0.00 3.77
178 179 2.912956 TCAGCTAGAACAAGGATGGGTT 59.087 45.455 0.00 0.00 0.00 4.11
179 180 2.551270 TCAGCTAGAACAAGGATGGGT 58.449 47.619 0.00 0.00 0.00 4.51
180 181 3.634397 TTCAGCTAGAACAAGGATGGG 57.366 47.619 0.00 0.00 0.00 4.00
181 182 4.578105 GGAATTCAGCTAGAACAAGGATGG 59.422 45.833 7.93 0.00 39.49 3.51
182 183 5.435291 AGGAATTCAGCTAGAACAAGGATG 58.565 41.667 7.93 0.00 39.49 3.51
183 184 5.397334 GGAGGAATTCAGCTAGAACAAGGAT 60.397 44.000 7.93 0.00 39.49 3.24
184 185 4.080863 GGAGGAATTCAGCTAGAACAAGGA 60.081 45.833 7.93 0.00 39.49 3.36
185 186 4.080638 AGGAGGAATTCAGCTAGAACAAGG 60.081 45.833 7.93 0.00 39.49 3.61
186 187 5.096443 AGGAGGAATTCAGCTAGAACAAG 57.904 43.478 7.93 0.00 39.49 3.16
187 188 5.505181 AAGGAGGAATTCAGCTAGAACAA 57.495 39.130 7.93 0.00 39.49 2.83
188 189 5.221925 ACAAAGGAGGAATTCAGCTAGAACA 60.222 40.000 7.93 0.00 39.49 3.18
189 190 5.249420 ACAAAGGAGGAATTCAGCTAGAAC 58.751 41.667 7.93 0.00 39.49 3.01
190 191 5.491982 GACAAAGGAGGAATTCAGCTAGAA 58.508 41.667 7.93 0.00 41.28 2.10
191 192 4.080863 GGACAAAGGAGGAATTCAGCTAGA 60.081 45.833 7.93 0.00 0.00 2.43
192 193 4.195416 GGACAAAGGAGGAATTCAGCTAG 58.805 47.826 7.93 0.00 0.00 3.42
193 194 3.587061 TGGACAAAGGAGGAATTCAGCTA 59.413 43.478 7.93 0.00 0.00 3.32
194 195 2.376518 TGGACAAAGGAGGAATTCAGCT 59.623 45.455 7.93 0.00 0.00 4.24
195 196 2.795329 TGGACAAAGGAGGAATTCAGC 58.205 47.619 7.93 0.00 0.00 4.26
196 197 3.624861 CGATGGACAAAGGAGGAATTCAG 59.375 47.826 7.93 0.00 0.00 3.02
197 198 3.009033 ACGATGGACAAAGGAGGAATTCA 59.991 43.478 7.93 0.00 0.00 2.57
198 199 3.610911 ACGATGGACAAAGGAGGAATTC 58.389 45.455 0.00 0.00 0.00 2.17
199 200 3.721087 ACGATGGACAAAGGAGGAATT 57.279 42.857 0.00 0.00 0.00 2.17
200 201 3.721087 AACGATGGACAAAGGAGGAAT 57.279 42.857 0.00 0.00 0.00 3.01
201 202 4.627284 TTAACGATGGACAAAGGAGGAA 57.373 40.909 0.00 0.00 0.00 3.36
202 203 4.627284 TTTAACGATGGACAAAGGAGGA 57.373 40.909 0.00 0.00 0.00 3.71
203 204 6.113411 AGTATTTAACGATGGACAAAGGAGG 58.887 40.000 0.00 0.00 0.00 4.30
204 205 6.258068 GGAGTATTTAACGATGGACAAAGGAG 59.742 42.308 0.00 0.00 0.00 3.69
205 206 6.110707 GGAGTATTTAACGATGGACAAAGGA 58.889 40.000 0.00 0.00 0.00 3.36
206 207 5.296035 GGGAGTATTTAACGATGGACAAAGG 59.704 44.000 0.00 0.00 0.00 3.11
207 208 5.878116 TGGGAGTATTTAACGATGGACAAAG 59.122 40.000 0.00 0.00 0.00 2.77
208 209 5.806818 TGGGAGTATTTAACGATGGACAAA 58.193 37.500 0.00 0.00 0.00 2.83
209 210 5.423704 TGGGAGTATTTAACGATGGACAA 57.576 39.130 0.00 0.00 0.00 3.18
210 211 5.623956 ATGGGAGTATTTAACGATGGACA 57.376 39.130 0.00 0.00 0.00 4.02
211 212 6.649557 CCTAATGGGAGTATTTAACGATGGAC 59.350 42.308 0.00 0.00 37.23 4.02
212 213 6.765403 CCTAATGGGAGTATTTAACGATGGA 58.235 40.000 0.00 0.00 37.23 3.41
229 230 2.023673 TGAATTTCGCTGCCCTAATGG 58.976 47.619 0.00 0.00 37.09 3.16
230 231 3.781079 TTGAATTTCGCTGCCCTAATG 57.219 42.857 0.00 0.00 0.00 1.90
231 232 3.701040 ACATTGAATTTCGCTGCCCTAAT 59.299 39.130 0.00 0.00 0.00 1.73
232 233 3.088532 ACATTGAATTTCGCTGCCCTAA 58.911 40.909 0.00 0.00 0.00 2.69
233 234 2.722094 ACATTGAATTTCGCTGCCCTA 58.278 42.857 0.00 0.00 0.00 3.53
234 235 1.549203 ACATTGAATTTCGCTGCCCT 58.451 45.000 0.00 0.00 0.00 5.19
235 236 1.994779 CAACATTGAATTTCGCTGCCC 59.005 47.619 0.00 0.00 0.00 5.36
236 237 2.676076 ACAACATTGAATTTCGCTGCC 58.324 42.857 0.00 0.00 0.00 4.85
237 238 3.735240 TCAACAACATTGAATTTCGCTGC 59.265 39.130 0.00 0.00 0.00 5.25
238 239 5.886715 TTCAACAACATTGAATTTCGCTG 57.113 34.783 0.00 0.00 33.90 5.18
239 240 6.534793 AGTTTTCAACAACATTGAATTTCGCT 59.465 30.769 3.11 0.00 38.12 4.93
240 241 6.704819 AGTTTTCAACAACATTGAATTTCGC 58.295 32.000 3.11 0.00 38.12 4.70
270 271 5.892348 ACCTTACAAATCCCTTCACAAGAT 58.108 37.500 0.00 0.00 0.00 2.40
282 283 9.816354 ATTTGTGCCATAAATACCTTACAAATC 57.184 29.630 0.00 0.00 41.12 2.17
426 427 6.713762 TCCAGTGTTTTTGATTCAAGACAT 57.286 33.333 15.99 7.17 0.00 3.06
428 429 6.980397 ACATTCCAGTGTTTTTGATTCAAGAC 59.020 34.615 0.00 4.05 0.00 3.01
433 434 8.816640 ATGTTACATTCCAGTGTTTTTGATTC 57.183 30.769 0.00 0.00 33.62 2.52
438 439 5.533154 TCGGATGTTACATTCCAGTGTTTTT 59.467 36.000 0.00 0.00 33.62 1.94
439 440 5.067273 TCGGATGTTACATTCCAGTGTTTT 58.933 37.500 0.00 0.00 33.62 2.43
445 446 5.051039 CGTGTATTCGGATGTTACATTCCAG 60.051 44.000 0.00 0.70 31.99 3.86
459 460 1.593006 GGAGACAATGCGTGTATTCGG 59.407 52.381 0.00 0.00 41.96 4.30
502 503 8.821686 TGTGATTACATTCCATTAGAATTGGT 57.178 30.769 0.00 0.00 42.86 3.67
538 541 5.053811 GTGTTTGGTTTGGGAATTAACTGG 58.946 41.667 0.00 0.00 0.00 4.00
541 544 5.875359 TGTTGTGTTTGGTTTGGGAATTAAC 59.125 36.000 0.00 0.00 0.00 2.01
653 656 3.548770 ACCAATCATGCATGGAGTACTG 58.451 45.455 25.97 13.38 39.12 2.74
747 763 8.770438 TTTGTTCATATGGTTTATTGCTTTCC 57.230 30.769 2.13 0.00 0.00 3.13
754 770 8.466798 GTGGTAGCTTTGTTCATATGGTTTATT 58.533 33.333 2.13 0.00 0.00 1.40
881 924 0.466007 TGTGCTGCACATTGAGGTGT 60.466 50.000 29.99 0.00 39.62 4.16
909 952 2.808543 GTCTCTGCCACGAGTTGAAATT 59.191 45.455 0.00 0.00 32.83 1.82
926 969 2.095263 GCTGACTGTCTGAGTGAGTCTC 60.095 54.545 17.48 0.00 38.15 3.36
937 980 2.560542 CACCACTCTTAGCTGACTGTCT 59.439 50.000 9.51 0.00 0.00 3.41
939 982 1.620819 CCACCACTCTTAGCTGACTGT 59.379 52.381 0.00 0.00 0.00 3.55
943 986 3.901844 AGTTAACCACCACTCTTAGCTGA 59.098 43.478 0.88 0.00 0.00 4.26
947 997 5.209818 TCACAGTTAACCACCACTCTTAG 57.790 43.478 0.88 0.00 0.00 2.18
949 999 4.348168 AGATCACAGTTAACCACCACTCTT 59.652 41.667 0.88 0.00 0.00 2.85
1029 1080 1.645710 ACGGGAAGAAGAGGATGTGT 58.354 50.000 0.00 0.00 0.00 3.72
2115 2285 2.048127 GTCAAGAAGGCGCCGACT 60.048 61.111 23.20 21.06 0.00 4.18
2142 2312 1.115467 CCTCCAGCGTAGAGTTCCAT 58.885 55.000 0.97 0.00 0.00 3.41
2505 2696 2.561922 CGAAGAATCCGACGTCTATCG 58.438 52.381 14.70 8.66 46.00 2.92
2528 2719 3.484229 CGAAGACAAGAATTAAGCTGCCG 60.484 47.826 0.00 0.00 0.00 5.69
2561 2752 2.298411 ACTTTGGCACACAAGCAAAG 57.702 45.000 0.00 0.00 40.82 2.77
2584 2775 7.971183 ATAACAACAACACCAACAAAGTTTT 57.029 28.000 0.00 0.00 0.00 2.43
2621 2812 6.397831 TTCCGTTATTACAACGACATCAAG 57.602 37.500 10.84 0.00 45.64 3.02
2625 2816 7.041916 TGAGTTTTTCCGTTATTACAACGACAT 60.042 33.333 10.84 0.00 45.64 3.06
2629 2820 6.652245 AGTGAGTTTTTCCGTTATTACAACG 58.348 36.000 2.67 2.67 42.74 4.10
2640 2831 5.455525 GTGACAAAATGAGTGAGTTTTTCCG 59.544 40.000 0.00 0.00 0.00 4.30
2641 2832 5.455525 CGTGACAAAATGAGTGAGTTTTTCC 59.544 40.000 0.00 0.00 0.00 3.13
2642 2833 6.027749 ACGTGACAAAATGAGTGAGTTTTTC 58.972 36.000 0.00 0.00 0.00 2.29
2643 2834 5.949735 ACGTGACAAAATGAGTGAGTTTTT 58.050 33.333 0.00 0.00 0.00 1.94
2644 2835 5.560966 ACGTGACAAAATGAGTGAGTTTT 57.439 34.783 0.00 0.00 0.00 2.43
2645 2836 6.481976 TCATACGTGACAAAATGAGTGAGTTT 59.518 34.615 0.00 0.00 0.00 2.66
2646 2837 5.989168 TCATACGTGACAAAATGAGTGAGTT 59.011 36.000 0.00 0.00 0.00 3.01
2647 2838 5.538118 TCATACGTGACAAAATGAGTGAGT 58.462 37.500 0.00 0.00 0.00 3.41
2648 2839 6.087518 CTCATACGTGACAAAATGAGTGAG 57.912 41.667 13.31 0.00 40.18 3.51
2652 2843 7.702348 TCATCTACTCATACGTGACAAAATGAG 59.298 37.037 17.96 17.96 46.94 2.90
2653 2844 7.488150 GTCATCTACTCATACGTGACAAAATGA 59.512 37.037 0.00 0.00 36.78 2.57
2654 2845 7.275560 TGTCATCTACTCATACGTGACAAAATG 59.724 37.037 0.00 0.00 41.85 2.32
2655 2846 7.320399 TGTCATCTACTCATACGTGACAAAAT 58.680 34.615 0.00 0.00 41.85 1.82
2656 2847 6.683715 TGTCATCTACTCATACGTGACAAAA 58.316 36.000 0.00 0.00 41.85 2.44
2657 2848 6.262193 TGTCATCTACTCATACGTGACAAA 57.738 37.500 0.00 0.00 41.85 2.83
2658 2849 5.890424 TGTCATCTACTCATACGTGACAA 57.110 39.130 0.00 0.00 41.85 3.18
2659 2850 5.588648 TGATGTCATCTACTCATACGTGACA 59.411 40.000 13.90 8.24 46.60 3.58
2660 2851 6.061231 TGATGTCATCTACTCATACGTGAC 57.939 41.667 13.90 0.00 37.18 3.67
2661 2852 5.823045 ACTGATGTCATCTACTCATACGTGA 59.177 40.000 13.90 0.00 0.00 4.35
2662 2853 6.066054 ACTGATGTCATCTACTCATACGTG 57.934 41.667 13.90 0.00 0.00 4.49
2663 2854 7.803279 TTACTGATGTCATCTACTCATACGT 57.197 36.000 13.90 0.00 0.00 3.57
2664 2855 9.516314 TTTTTACTGATGTCATCTACTCATACG 57.484 33.333 13.90 0.00 0.00 3.06
2687 2878 9.872721 AAAATGCAATTGTTCCAAAAGATTTTT 57.127 22.222 7.40 0.00 36.10 1.94
2688 2879 9.872721 AAAAATGCAATTGTTCCAAAAGATTTT 57.127 22.222 7.40 0.00 36.10 1.82
2690 2881 9.949174 GTAAAAATGCAATTGTTCCAAAAGATT 57.051 25.926 7.40 0.00 34.96 2.40
2691 2882 8.567104 GGTAAAAATGCAATTGTTCCAAAAGAT 58.433 29.630 7.40 0.00 34.96 2.40
2692 2883 7.772757 AGGTAAAAATGCAATTGTTCCAAAAGA 59.227 29.630 7.40 0.00 34.96 2.52
2693 2884 7.929159 AGGTAAAAATGCAATTGTTCCAAAAG 58.071 30.769 7.40 0.00 34.96 2.27
2694 2885 7.772757 AGAGGTAAAAATGCAATTGTTCCAAAA 59.227 29.630 7.40 0.00 34.96 2.44
2695 2886 7.278875 AGAGGTAAAAATGCAATTGTTCCAAA 58.721 30.769 7.40 0.00 34.96 3.28
2696 2887 6.825610 AGAGGTAAAAATGCAATTGTTCCAA 58.174 32.000 7.40 0.00 34.96 3.53
2697 2888 6.418057 AGAGGTAAAAATGCAATTGTTCCA 57.582 33.333 7.40 0.00 34.96 3.53
2700 2891 8.253113 CCATCTAGAGGTAAAAATGCAATTGTT 58.747 33.333 7.40 0.00 37.55 2.83
2752 2943 4.104776 CAAAACTGAGCAAGCTCGAAAAA 58.895 39.130 16.45 0.00 45.48 1.94
2928 3119 3.904136 AAACGATGCTTTTGTCCTGAG 57.096 42.857 0.00 0.00 0.00 3.35
3077 3269 9.349713 ACAAGTTGATACAAACTCAGGAAAATA 57.650 29.630 10.54 0.00 39.48 1.40
3091 3283 8.684386 TGGAAACTTCATAACAAGTTGATACA 57.316 30.769 10.54 0.00 44.28 2.29
3316 3511 4.222145 GGGCATATCATTTGCATTCAGGAT 59.778 41.667 2.29 0.00 41.95 3.24
3412 3608 8.999220 ACCGTTTAACCAAAACTTTGAAAATA 57.001 26.923 3.72 0.00 44.49 1.40
3430 3626 1.807742 CGAATGCCCTTTGACCGTTTA 59.192 47.619 0.00 0.00 0.00 2.01
3453 3649 5.076873 CCCTTACTTTTTCCATCAAGGTCA 58.923 41.667 0.00 0.00 39.02 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.