Multiple sequence alignment - TraesCS7B01G074500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G074500 chr7B 100.000 2951 0 0 1 2951 84219426 84222376 0.000000e+00 5450.0
1 TraesCS7B01G074500 chr7B 93.865 163 8 2 2502 2663 84229204 84229365 8.170000e-61 244.0
2 TraesCS7B01G074500 chr7B 94.203 69 3 1 2448 2515 84226422 84226490 1.450000e-18 104.0
3 TraesCS7B01G074500 chr7D 91.607 2085 74 35 393 2445 123145498 123147513 0.000000e+00 2787.0
4 TraesCS7B01G074500 chr7D 87.845 181 18 4 212 391 123145287 123145464 2.980000e-50 209.0
5 TraesCS7B01G074500 chr7A 90.418 1868 93 24 537 2342 126035906 126034063 0.000000e+00 2379.0
6 TraesCS7B01G074500 chr7A 95.400 500 20 2 2452 2951 499342115 499342611 0.000000e+00 793.0
7 TraesCS7B01G074500 chr7A 84.375 384 41 13 18 396 126038931 126038562 2.800000e-95 359.0
8 TraesCS7B01G074500 chr7A 89.697 165 10 2 381 541 126038284 126038123 1.390000e-48 204.0
9 TraesCS7B01G074500 chr7A 97.297 111 3 0 2335 2445 126034032 126033922 3.880000e-44 189.0
10 TraesCS7B01G074500 chr6B 94.841 504 25 1 2448 2951 227073453 227073955 0.000000e+00 785.0
11 TraesCS7B01G074500 chr6B 91.667 216 18 0 2448 2663 227089827 227090042 1.720000e-77 300.0
12 TraesCS7B01G074500 chr6B 90.045 221 16 6 2734 2951 626290491 626290708 6.230000e-72 281.0
13 TraesCS7B01G074500 chr6B 91.489 94 5 1 1680 1770 632955338 632955431 3.090000e-25 126.0
14 TraesCS7B01G074500 chr6B 91.304 69 4 2 1992 2060 632955819 632955885 3.130000e-15 93.5
15 TraesCS7B01G074500 chr2B 94.444 504 27 1 2448 2951 735815104 735815606 0.000000e+00 774.0
16 TraesCS7B01G074500 chr2B 94.444 504 24 2 2448 2951 165056304 165055805 0.000000e+00 773.0
17 TraesCS7B01G074500 chr2B 93.926 461 24 3 2493 2951 110460037 110459579 0.000000e+00 693.0
18 TraesCS7B01G074500 chr2B 94.872 39 2 0 2452 2490 165048684 165048646 8.830000e-06 62.1
19 TraesCS7B01G074500 chr6A 92.974 427 27 1 1234 1657 53455245 53455671 1.160000e-173 619.0
20 TraesCS7B01G074500 chr6A 91.489 94 5 1 1680 1770 563026797 563026890 3.090000e-25 126.0
21 TraesCS7B01G074500 chr6A 94.030 67 3 1 1992 2058 563027256 563027321 1.870000e-17 100.0
22 TraesCS7B01G074500 chr1B 90.783 217 19 1 2452 2667 9482039 9482255 3.720000e-74 289.0
23 TraesCS7B01G074500 chr5D 89.686 223 18 5 2732 2951 2601199 2600979 2.240000e-71 279.0
24 TraesCS7B01G074500 chr5B 89.686 223 17 5 2732 2951 682250707 682250488 2.240000e-71 279.0
25 TraesCS7B01G074500 chr5B 87.931 58 3 3 2655 2712 571524971 571524918 6.830000e-07 65.8
26 TraesCS7B01G074500 chr1A 93.158 190 13 0 1493 1682 374684401 374684212 2.240000e-71 279.0
27 TraesCS7B01G074500 chr3A 88.362 232 19 7 2722 2951 13824190 13824415 3.750000e-69 272.0
28 TraesCS7B01G074500 chr3A 82.178 303 34 15 2655 2951 611180707 611180419 2.940000e-60 243.0
29 TraesCS7B01G074500 chr6D 92.553 94 4 1 1680 1770 420004501 420004594 6.640000e-27 132.0
30 TraesCS7B01G074500 chr6D 91.304 69 4 2 1992 2060 420004954 420005020 3.130000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G074500 chr7B 84219426 84222376 2950 False 5450.00 5450 100.00000 1 2951 1 chr7B.!!$F1 2950
1 TraesCS7B01G074500 chr7D 123145287 123147513 2226 False 1498.00 2787 89.72600 212 2445 2 chr7D.!!$F1 2233
2 TraesCS7B01G074500 chr7A 126033922 126038931 5009 True 782.75 2379 90.44675 18 2445 4 chr7A.!!$R1 2427
3 TraesCS7B01G074500 chr6B 227073453 227073955 502 False 785.00 785 94.84100 2448 2951 1 chr6B.!!$F1 503
4 TraesCS7B01G074500 chr2B 735815104 735815606 502 False 774.00 774 94.44400 2448 2951 1 chr2B.!!$F1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 214 0.108662 CGCCACATGCTCAGTAGTCA 60.109 55.0 0.00 0.00 38.05 3.41 F
372 378 0.250814 ATTTTTACCCCGACGCCACA 60.251 50.0 0.00 0.00 0.00 4.17 F
456 784 0.255604 CATACATCACCAGTGGCCCA 59.744 55.0 9.78 0.00 0.00 5.36 F
1050 3640 0.814457 TCAACAACAAGCCTTGCGTT 59.186 45.0 3.88 5.71 31.93 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1188 3794 0.172578 TGTACGTCCTCATCTTGCCG 59.827 55.0 0.00 0.0 0.00 5.69 R
1875 4502 0.389426 GGCCTTCGCTTGAGTAACGA 60.389 55.0 0.00 0.0 34.44 3.85 R
1880 4507 0.603975 GTTCTGGCCTTCGCTTGAGT 60.604 55.0 3.32 0.0 34.44 3.41 R
2538 5213 0.948678 GGCGCCTTTTTGTACAGACA 59.051 50.0 22.15 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.764432 AGAACGGAGGGAGTAGTAGTTAAT 58.236 41.667 0.00 0.00 0.00 1.40
31 32 9.294614 CGGAGGGAGTAGTAGTTAATAGTTAAT 57.705 37.037 0.00 0.00 0.00 1.40
51 52 1.081892 CACAGCTGGAATCAACCGAG 58.918 55.000 19.93 0.00 0.00 4.63
53 54 1.081892 CAGCTGGAATCAACCGAGTG 58.918 55.000 5.57 0.00 0.00 3.51
54 55 0.976641 AGCTGGAATCAACCGAGTGA 59.023 50.000 0.00 0.00 0.00 3.41
96 100 1.549037 GCCAGGTGGTTGGTTAATCCA 60.549 52.381 0.00 0.00 40.49 3.41
130 134 4.566759 CGAGACGTTAATGTCAATGTCCAT 59.433 41.667 25.75 6.18 42.82 3.41
131 135 5.746721 CGAGACGTTAATGTCAATGTCCATA 59.253 40.000 25.75 0.00 42.82 2.74
133 137 6.640518 AGACGTTAATGTCAATGTCCATAGT 58.359 36.000 25.75 1.96 42.82 2.12
169 173 3.009140 GCACGTCATGCGATCCTG 58.991 61.111 14.88 5.37 46.55 3.86
170 174 3.009140 CACGTCATGCGATCCTGC 58.991 61.111 14.88 0.00 44.77 4.85
194 199 0.672401 GGATTTTCACTCCGACGCCA 60.672 55.000 0.00 0.00 0.00 5.69
196 201 0.250124 ATTTTCACTCCGACGCCACA 60.250 50.000 0.00 0.00 0.00 4.17
197 202 0.250124 TTTTCACTCCGACGCCACAT 60.250 50.000 0.00 0.00 0.00 3.21
198 203 0.948623 TTTCACTCCGACGCCACATG 60.949 55.000 0.00 0.00 0.00 3.21
200 205 3.695606 ACTCCGACGCCACATGCT 61.696 61.111 0.00 0.00 38.05 3.79
201 206 2.887568 CTCCGACGCCACATGCTC 60.888 66.667 0.00 0.00 38.05 4.26
202 207 3.647649 CTCCGACGCCACATGCTCA 62.648 63.158 0.00 0.00 38.05 4.26
203 208 3.190849 CCGACGCCACATGCTCAG 61.191 66.667 0.00 0.00 38.05 3.35
205 210 1.153842 CGACGCCACATGCTCAGTA 60.154 57.895 0.00 0.00 38.05 2.74
206 211 1.142185 CGACGCCACATGCTCAGTAG 61.142 60.000 0.00 0.00 38.05 2.57
209 214 0.108662 CGCCACATGCTCAGTAGTCA 60.109 55.000 0.00 0.00 38.05 3.41
210 215 1.649664 GCCACATGCTCAGTAGTCAG 58.350 55.000 0.00 0.00 36.87 3.51
211 216 1.649664 CCACATGCTCAGTAGTCAGC 58.350 55.000 0.00 0.00 36.08 4.26
314 319 3.936453 GTGCCTTAATGTCAACGTCCATA 59.064 43.478 0.00 0.00 0.00 2.74
322 327 3.799366 TGTCAACGTCCATAGTGTTTGT 58.201 40.909 0.00 0.00 0.00 2.83
324 329 3.805422 GTCAACGTCCATAGTGTTTGTGA 59.195 43.478 0.00 0.00 0.00 3.58
325 330 4.451096 GTCAACGTCCATAGTGTTTGTGAT 59.549 41.667 0.00 0.00 0.00 3.06
333 338 8.233868 CGTCCATAGTGTTTGTGATTTTGATAA 58.766 33.333 0.00 0.00 0.00 1.75
348 353 8.337532 TGATTTTGATAATCACACAATCTAGCG 58.662 33.333 0.00 0.00 36.23 4.26
361 367 4.335594 ACAATCTAGCGCTGGATTTTTACC 59.664 41.667 37.19 0.00 38.48 2.85
372 378 0.250814 ATTTTTACCCCGACGCCACA 60.251 50.000 0.00 0.00 0.00 4.17
396 434 2.159142 CCGGACCATGTTCAGTAGTACC 60.159 54.545 0.00 0.00 0.00 3.34
411 739 3.746045 AGTACCAACTGACGAACATGT 57.254 42.857 0.00 0.00 33.57 3.21
456 784 0.255604 CATACATCACCAGTGGCCCA 59.744 55.000 9.78 0.00 0.00 5.36
543 3096 3.514309 ACCCGTCAGAAAGTACTTAGCAT 59.486 43.478 8.92 0.00 0.00 3.79
585 3148 2.031682 GTGGTTGACACTTGATGCACTC 60.032 50.000 0.00 0.00 46.72 3.51
612 3175 2.111999 CTCCACTCGGTTTGGCCAGA 62.112 60.000 5.11 0.00 36.97 3.86
613 3176 1.672356 CCACTCGGTTTGGCCAGAG 60.672 63.158 16.15 16.15 40.89 3.35
713 3294 6.890663 TTATTTTATGTAACGCAGTACGCT 57.109 33.333 7.82 0.00 45.00 5.07
752 3338 5.149054 CGTCGACTACCTTAATAGACGTT 57.851 43.478 14.70 0.00 43.09 3.99
838 3427 0.875728 TTGCCAAAATGTACGACCGG 59.124 50.000 0.00 0.00 0.00 5.28
1050 3640 0.814457 TCAACAACAAGCCTTGCGTT 59.186 45.000 3.88 5.71 31.93 4.84
1066 3666 1.561717 CGTTGCAAACCATCGACCGA 61.562 55.000 0.00 0.00 46.28 4.69
1212 3818 0.824759 AGATGAGGACGTACAAGGGC 59.175 55.000 0.00 0.00 0.00 5.19
1750 4368 3.635191 TGATGGACCCGTGCAGCA 61.635 61.111 3.01 3.01 44.68 4.41
1752 4370 4.722700 ATGGACCCGTGCAGCACC 62.723 66.667 20.16 5.98 33.50 5.01
1874 4501 3.875134 GGAGAACCGAAGAAACTGACAAA 59.125 43.478 0.00 0.00 0.00 2.83
1875 4502 4.515567 GGAGAACCGAAGAAACTGACAAAT 59.484 41.667 0.00 0.00 0.00 2.32
1876 4503 5.334182 GGAGAACCGAAGAAACTGACAAATC 60.334 44.000 0.00 0.00 0.00 2.17
1877 4504 4.211374 AGAACCGAAGAAACTGACAAATCG 59.789 41.667 0.00 0.00 0.00 3.34
1878 4505 3.463944 ACCGAAGAAACTGACAAATCGT 58.536 40.909 0.00 0.00 0.00 3.73
1879 4506 3.875134 ACCGAAGAAACTGACAAATCGTT 59.125 39.130 0.00 0.00 0.00 3.85
1880 4507 5.051816 ACCGAAGAAACTGACAAATCGTTA 58.948 37.500 0.00 0.00 0.00 3.18
1892 4519 3.432252 ACAAATCGTTACTCAAGCGAAGG 59.568 43.478 0.00 0.00 38.17 3.46
1927 4554 6.475504 CCATGCATGGTGATAACTATCCTTA 58.524 40.000 33.68 0.00 43.05 2.69
2073 4702 4.414852 CCTTCAATTGCTTGTTACATCCG 58.585 43.478 0.00 0.00 33.87 4.18
2118 4747 7.225145 GCAATTGCAAGCATATATTTCCTTTGA 59.775 33.333 25.36 0.00 41.59 2.69
2131 4760 1.365999 CTTTGAAACAACGGGCCCC 59.634 57.895 18.66 0.00 0.00 5.80
2132 4761 1.381327 TTTGAAACAACGGGCCCCA 60.381 52.632 18.66 2.74 0.00 4.96
2206 4835 6.097412 AGGGATTTCAGTAAGATTTTCATGCC 59.903 38.462 0.00 0.00 0.00 4.40
2220 4849 5.441718 TTTCATGCCTATCCAGAAGAGTT 57.558 39.130 0.00 0.00 0.00 3.01
2289 4918 0.523072 CTCGGCCACAAGGACATTTG 59.477 55.000 2.24 0.00 46.60 2.32
2435 5110 1.874562 GCGACTAGCCGACGGATAT 59.125 57.895 20.50 5.93 40.81 1.63
2445 5120 0.602905 CGACGGATATCCCTTTGGGC 60.603 60.000 16.36 2.73 43.94 5.36
2446 5121 0.250770 GACGGATATCCCTTTGGGCC 60.251 60.000 16.36 0.00 43.94 5.80
2450 5125 1.479389 GGATATCCCTTTGGGCCTGTG 60.479 57.143 11.02 0.00 43.94 3.66
2538 5213 0.179004 TTGGGACGCATTGTGAAGGT 60.179 50.000 3.82 0.00 0.00 3.50
2550 5225 5.449862 GCATTGTGAAGGTGTCTGTACAAAA 60.450 40.000 0.00 0.00 37.36 2.44
2557 5232 0.948678 TGTCTGTACAAAAAGGCGCC 59.051 50.000 21.89 21.89 30.91 6.53
2563 5238 1.874872 GTACAAAAAGGCGCCTGTACA 59.125 47.619 34.33 17.84 42.33 2.90
2590 5265 2.505557 GTCCGTACGACGCTTGGG 60.506 66.667 18.76 0.00 40.91 4.12
2610 5285 4.345837 TGGGCACTAATAACCGCTAACTAT 59.654 41.667 0.00 0.00 0.00 2.12
2615 5290 7.201670 GGCACTAATAACCGCTAACTATGTTTT 60.202 37.037 0.00 0.00 0.00 2.43
2761 5436 1.144913 CTCCTCCAAAAACCCTGTGGA 59.855 52.381 0.00 0.00 39.14 4.02
2762 5437 1.571457 TCCTCCAAAAACCCTGTGGAA 59.429 47.619 0.00 0.00 40.87 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.280197 ACTACTACTCCCTCCGTTCTC 57.720 52.381 0.00 0.00 0.00 2.87
2 3 6.770303 ACTATTAACTACTACTCCCTCCGTTC 59.230 42.308 0.00 0.00 0.00 3.95
3 4 6.667661 ACTATTAACTACTACTCCCTCCGTT 58.332 40.000 0.00 0.00 0.00 4.44
15 16 8.978472 TCCAGCTGTGATTAACTATTAACTACT 58.022 33.333 13.81 0.00 0.00 2.57
16 17 9.595823 TTCCAGCTGTGATTAACTATTAACTAC 57.404 33.333 13.81 0.00 0.00 2.73
24 25 5.880332 GGTTGATTCCAGCTGTGATTAACTA 59.120 40.000 22.17 5.03 0.00 2.24
31 32 0.684535 TCGGTTGATTCCAGCTGTGA 59.315 50.000 13.81 6.89 32.50 3.58
43 44 5.456548 TGTGTAATTAGTCACTCGGTTGA 57.543 39.130 7.50 0.00 35.82 3.18
51 52 2.031683 GGCCGCATGTGTAATTAGTCAC 59.968 50.000 5.38 0.41 35.43 3.67
53 54 2.285083 TGGCCGCATGTGTAATTAGTC 58.715 47.619 5.38 0.00 0.00 2.59
54 55 2.288666 CTGGCCGCATGTGTAATTAGT 58.711 47.619 5.38 0.00 0.00 2.24
96 100 3.574445 CGTCTCGATCCGGCGACT 61.574 66.667 9.30 0.00 36.17 4.18
102 106 3.060978 TGACATTAACGTCTCGATCCG 57.939 47.619 3.05 2.69 36.82 4.18
130 134 3.926527 CGAGTATCAAAGCACAAGCACTA 59.073 43.478 0.00 0.00 38.14 2.74
131 135 2.738846 CGAGTATCAAAGCACAAGCACT 59.261 45.455 0.00 0.00 38.14 4.40
133 137 1.464608 GCGAGTATCAAAGCACAAGCA 59.535 47.619 0.00 0.00 38.14 3.91
194 199 1.898472 AGTGCTGACTACTGAGCATGT 59.102 47.619 0.00 0.00 46.51 3.21
205 210 2.671351 CGTCGATTTGGTAGTGCTGACT 60.671 50.000 0.00 0.00 36.07 3.41
206 211 1.654105 CGTCGATTTGGTAGTGCTGAC 59.346 52.381 0.00 0.00 0.00 3.51
209 214 2.288579 TGTTCGTCGATTTGGTAGTGCT 60.289 45.455 0.00 0.00 0.00 4.40
210 215 2.063266 TGTTCGTCGATTTGGTAGTGC 58.937 47.619 0.00 0.00 0.00 4.40
211 216 3.483574 GCATGTTCGTCGATTTGGTAGTG 60.484 47.826 0.00 0.00 0.00 2.74
212 217 2.671396 GCATGTTCGTCGATTTGGTAGT 59.329 45.455 0.00 0.00 0.00 2.73
213 218 2.030457 GGCATGTTCGTCGATTTGGTAG 59.970 50.000 0.00 0.00 0.00 3.18
214 219 2.004017 GGCATGTTCGTCGATTTGGTA 58.996 47.619 0.00 0.00 0.00 3.25
215 220 0.802494 GGCATGTTCGTCGATTTGGT 59.198 50.000 0.00 0.00 0.00 3.67
216 221 1.062587 GAGGCATGTTCGTCGATTTGG 59.937 52.381 0.00 0.00 0.00 3.28
217 222 1.731709 TGAGGCATGTTCGTCGATTTG 59.268 47.619 0.00 0.00 0.00 2.32
218 223 2.093306 TGAGGCATGTTCGTCGATTT 57.907 45.000 0.00 0.00 0.00 2.17
246 251 4.519350 ACGTTCTCTCAGACTTATGTGACA 59.481 41.667 0.00 0.00 0.00 3.58
259 264 5.942236 ACTACCAGTATACAACGTTCTCTCA 59.058 40.000 5.50 0.00 0.00 3.27
322 327 8.337532 CGCTAGATTGTGTGATTATCAAAATCA 58.662 33.333 19.50 6.16 40.19 2.57
324 329 7.012704 AGCGCTAGATTGTGTGATTATCAAAAT 59.987 33.333 8.99 0.00 0.00 1.82
325 330 6.316140 AGCGCTAGATTGTGTGATTATCAAAA 59.684 34.615 8.99 0.00 0.00 2.44
333 338 1.482182 TCCAGCGCTAGATTGTGTGAT 59.518 47.619 10.99 0.00 0.00 3.06
348 353 0.730840 CGTCGGGGTAAAAATCCAGC 59.269 55.000 0.00 0.00 0.00 4.85
372 378 0.908910 TACTGAACATGGTCCGGCAT 59.091 50.000 8.62 0.00 0.00 4.40
396 434 3.248363 ACATGTGACATGTTCGTCAGTTG 59.752 43.478 24.38 0.00 46.23 3.16
456 784 2.046892 AGATCGCAAGTTGCCGCT 60.047 55.556 21.84 13.19 41.12 5.52
543 3096 4.020573 CACACCTACCTGTCTTGGAACATA 60.021 45.833 0.00 0.00 39.30 2.29
585 3148 1.821061 AACCGAGTGGAGACTGCAGG 61.821 60.000 19.93 0.00 39.21 4.85
612 3175 1.453379 GCATGATGCACCTGCCTCT 60.453 57.895 13.36 0.00 44.26 3.69
613 3176 3.117372 GCATGATGCACCTGCCTC 58.883 61.111 13.36 0.00 44.26 4.70
674 3254 8.567948 ACATAAAATAATAGTGCCTTGATTCGG 58.432 33.333 0.00 0.00 0.00 4.30
750 3336 2.673368 GCATCCTGTGTGCTACTACAAC 59.327 50.000 0.00 0.00 39.45 3.32
752 3338 2.672961 GCATCCTGTGTGCTACTACA 57.327 50.000 0.00 0.00 39.45 2.74
838 3427 5.127031 ACAAAACAGTGGCATATACAATCCC 59.873 40.000 0.00 0.00 0.00 3.85
1050 3640 0.953471 CCTTCGGTCGATGGTTTGCA 60.953 55.000 14.64 0.00 35.48 4.08
1066 3666 2.494073 CTCTTAGCTCAGTCGGTTCCTT 59.506 50.000 0.00 0.00 0.00 3.36
1188 3794 0.172578 TGTACGTCCTCATCTTGCCG 59.827 55.000 0.00 0.00 0.00 5.69
1212 3818 2.584418 CAGCTCCTCATCCGCACG 60.584 66.667 0.00 0.00 0.00 5.34
1563 4178 1.315981 TGGAGGAGCTGCAGTACTCG 61.316 60.000 16.64 0.00 33.55 4.18
1773 4391 1.078848 GCACTCGTCCTCCATTGCT 60.079 57.895 0.00 0.00 0.00 3.91
1776 4394 1.078848 GCTGCACTCGTCCTCCATT 60.079 57.895 0.00 0.00 0.00 3.16
1856 4483 3.875134 ACGATTTGTCAGTTTCTTCGGTT 59.125 39.130 0.00 0.00 0.00 4.44
1874 4501 1.641577 GCCTTCGCTTGAGTAACGAT 58.358 50.000 0.00 0.00 35.48 3.73
1875 4502 0.389426 GGCCTTCGCTTGAGTAACGA 60.389 55.000 0.00 0.00 34.44 3.85
1876 4503 0.669318 TGGCCTTCGCTTGAGTAACG 60.669 55.000 3.32 0.00 34.44 3.18
1877 4504 1.079503 CTGGCCTTCGCTTGAGTAAC 58.920 55.000 3.32 0.00 34.44 2.50
1878 4505 0.973632 TCTGGCCTTCGCTTGAGTAA 59.026 50.000 3.32 0.00 34.44 2.24
1879 4506 0.973632 TTCTGGCCTTCGCTTGAGTA 59.026 50.000 3.32 0.00 34.44 2.59
1880 4507 0.603975 GTTCTGGCCTTCGCTTGAGT 60.604 55.000 3.32 0.00 34.44 3.41
1969 4598 4.638304 ACGCTCAACTACCTTATTGTTGT 58.362 39.130 0.00 0.00 42.55 3.32
2113 4742 1.365999 GGGGCCCGTTGTTTCAAAG 59.634 57.895 17.79 0.00 0.00 2.77
2118 4747 2.675075 CGATGGGGCCCGTTGTTT 60.675 61.111 20.68 0.00 0.00 2.83
2131 4760 2.472861 GACACTCACACAGTTGACGATG 59.527 50.000 0.00 0.00 30.26 3.84
2132 4761 2.362397 AGACACTCACACAGTTGACGAT 59.638 45.455 0.00 0.00 30.26 3.73
2206 4835 5.419155 TGTAGTGGTGAACTCTTCTGGATAG 59.581 44.000 0.00 0.00 40.56 2.08
2220 4849 3.243234 CCGCACAAAATTTGTAGTGGTGA 60.243 43.478 21.55 0.00 43.23 4.02
2445 5120 7.330946 TCGTACAATCACTTTTATCTTCACAGG 59.669 37.037 0.00 0.00 0.00 4.00
2446 5121 8.239681 TCGTACAATCACTTTTATCTTCACAG 57.760 34.615 0.00 0.00 0.00 3.66
2513 5188 3.680490 TCACAATGCGTCCCAAATCTTA 58.320 40.909 0.00 0.00 0.00 2.10
2538 5213 0.948678 GGCGCCTTTTTGTACAGACA 59.051 50.000 22.15 0.00 0.00 3.41
2550 5225 3.466881 TGTCTGTACAGGCGCCTT 58.533 55.556 30.60 20.61 35.37 4.35
2563 5238 1.428219 CGTACGGACGCATCTGTCT 59.572 57.895 7.51 0.00 43.77 3.41
2590 5265 6.839820 AACATAGTTAGCGGTTATTAGTGC 57.160 37.500 0.00 0.00 0.00 4.40
2813 5488 7.039722 TCTCCTTATTATTTTTCCCACTGGT 57.960 36.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.