Multiple sequence alignment - TraesCS7B01G074100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G074100 chr7B 100.000 2455 0 0 1 2455 83923065 83920611 0.000000e+00 4534.0
1 TraesCS7B01G074100 chr7D 88.595 1666 63 42 862 2455 122682466 122684076 0.000000e+00 1906.0
2 TraesCS7B01G074100 chr7A 85.163 984 57 34 803 1713 125676584 125677551 0.000000e+00 926.0
3 TraesCS7B01G074100 chr7A 96.505 515 18 0 1941 2455 125677923 125678437 0.000000e+00 852.0
4 TraesCS7B01G074100 chr7A 82.751 458 50 21 620 1059 125915659 125915213 4.950000e-102 381.0
5 TraesCS7B01G074100 chr7A 82.986 288 18 7 1049 1335 125913814 125913557 5.280000e-57 231.0
6 TraesCS7B01G074100 chr3A 75.862 290 36 16 393 653 607475646 607475362 1.540000e-22 117.0
7 TraesCS7B01G074100 chr5A 82.400 125 16 4 372 492 278298161 278298283 1.200000e-18 104.0
8 TraesCS7B01G074100 chr5D 83.495 103 15 2 391 492 341492140 341492241 7.230000e-16 95.3
9 TraesCS7B01G074100 chrUn 81.034 116 16 4 379 490 67926172 67926059 1.210000e-13 87.9
10 TraesCS7B01G074100 chr3B 96.875 32 0 1 482 513 768257896 768257866 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G074100 chr7B 83920611 83923065 2454 True 4534 4534 100.0000 1 2455 1 chr7B.!!$R1 2454
1 TraesCS7B01G074100 chr7D 122682466 122684076 1610 False 1906 1906 88.5950 862 2455 1 chr7D.!!$F1 1593
2 TraesCS7B01G074100 chr7A 125676584 125678437 1853 False 889 926 90.8340 803 2455 2 chr7A.!!$F1 1652
3 TraesCS7B01G074100 chr7A 125913557 125915659 2102 True 306 381 82.8685 620 1335 2 chr7A.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 556 0.031043 ACGACCGTCGAACATTGACA 59.969 50.0 27.03 0.0 43.74 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 3952 0.31716 TTGATGTGCGACGAGAGGTT 59.683 50.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.471761 GGATAGAGGCCAGCTTGC 57.528 61.111 5.01 0.00 0.00 4.01
18 19 1.596477 GGATAGAGGCCAGCTTGCG 60.596 63.158 5.01 0.00 0.00 4.85
19 20 1.596477 GATAGAGGCCAGCTTGCGG 60.596 63.158 5.01 0.00 0.00 5.69
20 21 3.112205 ATAGAGGCCAGCTTGCGGG 62.112 63.158 5.01 7.41 0.00 6.13
30 31 4.749310 CTTGCGGGCGAGCTCACT 62.749 66.667 15.40 0.00 38.13 3.41
34 35 4.504916 CGGGCGAGCTCACTGGAG 62.505 72.222 15.40 0.00 44.33 3.86
35 36 4.154347 GGGCGAGCTCACTGGAGG 62.154 72.222 15.40 0.00 41.67 4.30
41 42 2.607750 GCTCACTGGAGGTCCCCA 60.608 66.667 0.00 0.00 41.67 4.96
42 43 2.224159 GCTCACTGGAGGTCCCCAA 61.224 63.158 0.00 0.00 41.67 4.12
43 44 1.679898 CTCACTGGAGGTCCCCAAC 59.320 63.158 0.00 0.00 37.51 3.77
44 45 2.172483 CTCACTGGAGGTCCCCAACG 62.172 65.000 0.00 0.00 37.51 4.10
45 46 2.203182 ACTGGAGGTCCCCAACGA 59.797 61.111 0.00 0.00 35.47 3.85
46 47 1.229529 ACTGGAGGTCCCCAACGAT 60.230 57.895 0.00 0.00 35.47 3.73
47 48 1.221840 CTGGAGGTCCCCAACGATG 59.778 63.158 0.00 0.00 35.47 3.84
48 49 1.229368 TGGAGGTCCCCAACGATGA 60.229 57.895 0.00 0.00 32.31 2.92
49 50 1.221021 GGAGGTCCCCAACGATGAC 59.779 63.158 0.00 0.00 0.00 3.06
50 51 1.265454 GGAGGTCCCCAACGATGACT 61.265 60.000 0.00 0.00 0.00 3.41
51 52 0.175989 GAGGTCCCCAACGATGACTC 59.824 60.000 0.00 0.00 0.00 3.36
56 57 0.459899 CCCCAACGATGACTCGATGA 59.540 55.000 6.81 0.00 46.95 2.92
57 58 1.560923 CCCAACGATGACTCGATGAC 58.439 55.000 6.81 0.00 46.95 3.06
58 59 1.135112 CCCAACGATGACTCGATGACA 60.135 52.381 6.81 0.00 46.95 3.58
59 60 2.606108 CCAACGATGACTCGATGACAA 58.394 47.619 6.81 0.00 46.95 3.18
60 61 2.600420 CCAACGATGACTCGATGACAAG 59.400 50.000 6.81 0.00 46.95 3.16
61 62 2.028523 CAACGATGACTCGATGACAAGC 59.971 50.000 1.54 0.00 46.95 4.01
62 63 5.055880 CAACGATGACTCGATGACAAGCC 62.056 52.174 1.54 0.00 46.95 4.35
63 64 1.203928 GATGACTCGATGACAAGCCG 58.796 55.000 0.00 0.00 0.00 5.52
64 65 0.179100 ATGACTCGATGACAAGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
65 66 2.125512 ACTCGATGACAAGCCGGC 60.126 61.111 21.89 21.89 0.00 6.13
66 67 3.257561 CTCGATGACAAGCCGGCG 61.258 66.667 23.20 10.77 0.00 6.46
85 86 4.308458 CCTTGTCCGCGTGGTCCA 62.308 66.667 16.01 10.38 36.30 4.02
86 87 2.047274 CTTGTCCGCGTGGTCCAT 60.047 61.111 16.01 0.00 36.30 3.41
87 88 2.358125 TTGTCCGCGTGGTCCATG 60.358 61.111 16.01 6.73 36.30 3.66
93 94 2.819595 GCGTGGTCCATGCGACAT 60.820 61.111 20.16 0.00 43.95 3.06
94 95 3.092403 CGTGGTCCATGCGACATG 58.908 61.111 13.95 11.41 43.95 3.21
95 96 1.447663 CGTGGTCCATGCGACATGA 60.448 57.895 17.72 5.18 43.95 3.07
96 97 1.695893 CGTGGTCCATGCGACATGAC 61.696 60.000 17.72 13.69 43.95 3.06
97 98 1.078497 TGGTCCATGCGACATGACC 60.078 57.895 17.72 19.49 43.95 4.02
98 99 1.819632 GGTCCATGCGACATGACCC 60.820 63.158 17.72 13.36 43.95 4.46
99 100 1.221840 GTCCATGCGACATGACCCT 59.778 57.895 17.72 0.00 41.54 4.34
100 101 0.464036 GTCCATGCGACATGACCCTA 59.536 55.000 17.72 0.48 41.54 3.53
101 102 0.752658 TCCATGCGACATGACCCTAG 59.247 55.000 17.72 4.16 0.00 3.02
102 103 0.752658 CCATGCGACATGACCCTAGA 59.247 55.000 17.72 0.00 0.00 2.43
103 104 1.269988 CCATGCGACATGACCCTAGAG 60.270 57.143 17.72 0.00 0.00 2.43
104 105 0.390860 ATGCGACATGACCCTAGAGC 59.609 55.000 0.00 0.00 0.00 4.09
105 106 0.970427 TGCGACATGACCCTAGAGCA 60.970 55.000 0.00 0.00 0.00 4.26
106 107 0.249238 GCGACATGACCCTAGAGCAG 60.249 60.000 0.00 0.00 0.00 4.24
107 108 0.387202 CGACATGACCCTAGAGCAGG 59.613 60.000 0.00 0.00 45.07 4.85
108 109 0.105778 GACATGACCCTAGAGCAGGC 59.894 60.000 0.00 0.00 43.98 4.85
109 110 1.068753 CATGACCCTAGAGCAGGCG 59.931 63.158 0.00 0.00 43.98 5.52
110 111 2.801631 ATGACCCTAGAGCAGGCGC 61.802 63.158 0.00 0.00 43.98 6.53
111 112 3.461773 GACCCTAGAGCAGGCGCA 61.462 66.667 10.83 0.00 43.98 6.09
112 113 2.765807 ACCCTAGAGCAGGCGCAT 60.766 61.111 10.83 0.00 43.98 4.73
113 114 2.280660 CCCTAGAGCAGGCGCATG 60.281 66.667 19.36 19.36 43.98 4.06
114 115 2.971413 CCTAGAGCAGGCGCATGC 60.971 66.667 37.46 37.46 46.88 4.06
125 126 3.776849 CGCATGCGCACTTCGACA 61.777 61.111 29.09 0.00 41.67 4.35
126 127 2.202222 GCATGCGCACTTCGACAC 60.202 61.111 14.90 0.00 41.67 3.67
127 128 2.476051 CATGCGCACTTCGACACC 59.524 61.111 14.90 0.00 41.67 4.16
128 129 3.112075 ATGCGCACTTCGACACCG 61.112 61.111 14.90 0.00 41.67 4.94
129 130 3.858868 ATGCGCACTTCGACACCGT 62.859 57.895 14.90 0.00 41.67 4.83
130 131 3.764049 GCGCACTTCGACACCGTC 61.764 66.667 0.30 0.00 41.67 4.79
131 132 2.354188 CGCACTTCGACACCGTCA 60.354 61.111 0.00 0.00 41.67 4.35
132 133 1.733041 CGCACTTCGACACCGTCAT 60.733 57.895 0.00 0.00 41.67 3.06
133 134 1.781555 GCACTTCGACACCGTCATG 59.218 57.895 0.00 0.00 37.05 3.07
134 135 0.666274 GCACTTCGACACCGTCATGA 60.666 55.000 0.00 0.00 37.05 3.07
135 136 1.996292 CACTTCGACACCGTCATGAT 58.004 50.000 0.00 0.00 37.05 2.45
136 137 2.734175 GCACTTCGACACCGTCATGATA 60.734 50.000 0.00 0.00 37.05 2.15
137 138 3.108881 CACTTCGACACCGTCATGATAG 58.891 50.000 0.00 0.00 37.05 2.08
138 139 3.014623 ACTTCGACACCGTCATGATAGA 58.985 45.455 0.00 0.00 37.05 1.98
139 140 3.065510 ACTTCGACACCGTCATGATAGAG 59.934 47.826 0.00 0.00 37.05 2.43
140 141 1.947456 TCGACACCGTCATGATAGAGG 59.053 52.381 0.00 3.32 37.05 3.69
141 142 1.947456 CGACACCGTCATGATAGAGGA 59.053 52.381 13.87 0.00 32.09 3.71
142 143 2.031595 CGACACCGTCATGATAGAGGAG 60.032 54.545 13.87 9.68 32.09 3.69
143 144 1.683917 ACACCGTCATGATAGAGGAGC 59.316 52.381 13.87 0.00 0.00 4.70
144 145 1.683385 CACCGTCATGATAGAGGAGCA 59.317 52.381 13.87 0.00 0.00 4.26
145 146 1.959985 ACCGTCATGATAGAGGAGCAG 59.040 52.381 13.87 0.00 0.00 4.24
146 147 1.959985 CCGTCATGATAGAGGAGCAGT 59.040 52.381 0.00 0.00 0.00 4.40
147 148 2.030363 CCGTCATGATAGAGGAGCAGTC 60.030 54.545 0.00 0.00 0.00 3.51
148 149 2.350293 CGTCATGATAGAGGAGCAGTCG 60.350 54.545 0.00 0.00 0.00 4.18
149 150 2.030363 GTCATGATAGAGGAGCAGTCGG 60.030 54.545 0.00 0.00 0.00 4.79
150 151 0.965439 ATGATAGAGGAGCAGTCGGC 59.035 55.000 0.00 0.00 45.30 5.54
160 161 3.716006 CAGTCGGCACCGCAACTG 61.716 66.667 14.22 14.22 37.46 3.16
161 162 4.235762 AGTCGGCACCGCAACTGT 62.236 61.111 3.66 0.00 39.59 3.55
162 163 3.276846 GTCGGCACCGCAACTGTT 61.277 61.111 3.66 0.00 39.59 3.16
163 164 2.970324 TCGGCACCGCAACTGTTC 60.970 61.111 3.66 0.00 39.59 3.18
164 165 3.276091 CGGCACCGCAACTGTTCA 61.276 61.111 0.00 0.00 0.00 3.18
165 166 2.639286 GGCACCGCAACTGTTCAG 59.361 61.111 0.00 0.00 0.00 3.02
166 167 2.186826 GGCACCGCAACTGTTCAGT 61.187 57.895 0.00 0.00 0.00 3.41
167 168 1.724582 GGCACCGCAACTGTTCAGTT 61.725 55.000 11.75 11.75 0.00 3.16
168 169 0.941542 GCACCGCAACTGTTCAGTTA 59.058 50.000 16.23 0.00 0.00 2.24
169 170 1.069906 GCACCGCAACTGTTCAGTTAG 60.070 52.381 16.23 13.19 0.00 2.34
170 171 1.069906 CACCGCAACTGTTCAGTTAGC 60.070 52.381 16.23 18.29 0.00 3.09
171 172 0.163788 CCGCAACTGTTCAGTTAGCG 59.836 55.000 30.57 30.57 42.68 4.26
172 173 0.859232 CGCAACTGTTCAGTTAGCGT 59.141 50.000 29.94 9.79 40.61 5.07
173 174 1.260561 CGCAACTGTTCAGTTAGCGTT 59.739 47.619 29.94 9.27 40.61 4.84
174 175 2.659291 CGCAACTGTTCAGTTAGCGTTC 60.659 50.000 29.94 14.33 40.61 3.95
175 176 2.349532 GCAACTGTTCAGTTAGCGTTCC 60.350 50.000 16.23 0.00 0.00 3.62
176 177 1.779569 ACTGTTCAGTTAGCGTTCCG 58.220 50.000 0.00 0.00 0.00 4.30
177 178 1.068474 CTGTTCAGTTAGCGTTCCGG 58.932 55.000 0.00 0.00 0.00 5.14
178 179 0.947180 TGTTCAGTTAGCGTTCCGGC 60.947 55.000 0.00 0.00 0.00 6.13
179 180 0.947180 GTTCAGTTAGCGTTCCGGCA 60.947 55.000 0.00 0.00 34.64 5.69
180 181 0.669318 TTCAGTTAGCGTTCCGGCAG 60.669 55.000 0.00 0.00 34.64 4.85
181 182 2.100631 CAGTTAGCGTTCCGGCAGG 61.101 63.158 0.00 0.00 39.46 4.85
182 183 3.497031 GTTAGCGTTCCGGCAGGC 61.497 66.667 10.94 10.94 37.47 4.85
195 196 2.437180 CAGGCGCATGAGGAGCAA 60.437 61.111 18.87 0.00 45.03 3.91
196 197 2.437359 AGGCGCATGAGGAGCAAC 60.437 61.111 10.83 0.00 45.03 4.17
197 198 2.747460 GGCGCATGAGGAGCAACA 60.747 61.111 10.83 0.00 45.03 3.33
198 199 2.334946 GGCGCATGAGGAGCAACAA 61.335 57.895 10.83 0.00 45.03 2.83
199 200 1.660560 GGCGCATGAGGAGCAACAAT 61.661 55.000 10.83 0.00 45.03 2.71
200 201 1.016627 GCGCATGAGGAGCAACAATA 58.983 50.000 0.30 0.00 42.48 1.90
201 202 1.268234 GCGCATGAGGAGCAACAATAC 60.268 52.381 0.30 0.00 42.48 1.89
202 203 2.009051 CGCATGAGGAGCAACAATACA 58.991 47.619 0.00 0.00 0.00 2.29
203 204 2.419673 CGCATGAGGAGCAACAATACAA 59.580 45.455 0.00 0.00 0.00 2.41
204 205 3.728864 CGCATGAGGAGCAACAATACAAC 60.729 47.826 0.00 0.00 0.00 3.32
205 206 3.428045 GCATGAGGAGCAACAATACAACC 60.428 47.826 0.00 0.00 0.00 3.77
206 207 3.788227 TGAGGAGCAACAATACAACCT 57.212 42.857 0.00 0.00 0.00 3.50
207 208 3.674997 TGAGGAGCAACAATACAACCTC 58.325 45.455 0.00 0.00 41.61 3.85
208 209 2.673368 GAGGAGCAACAATACAACCTCG 59.327 50.000 0.00 0.00 34.26 4.63
209 210 1.130561 GGAGCAACAATACAACCTCGC 59.869 52.381 0.00 0.00 0.00 5.03
210 211 1.130561 GAGCAACAATACAACCTCGCC 59.869 52.381 0.00 0.00 0.00 5.54
211 212 0.170339 GCAACAATACAACCTCGCCC 59.830 55.000 0.00 0.00 0.00 6.13
212 213 0.808755 CAACAATACAACCTCGCCCC 59.191 55.000 0.00 0.00 0.00 5.80
213 214 0.323087 AACAATACAACCTCGCCCCC 60.323 55.000 0.00 0.00 0.00 5.40
214 215 1.205460 ACAATACAACCTCGCCCCCT 61.205 55.000 0.00 0.00 0.00 4.79
215 216 0.463833 CAATACAACCTCGCCCCCTC 60.464 60.000 0.00 0.00 0.00 4.30
216 217 1.968050 AATACAACCTCGCCCCCTCG 61.968 60.000 0.00 0.00 0.00 4.63
217 218 3.892104 TACAACCTCGCCCCCTCGT 62.892 63.158 0.00 0.00 0.00 4.18
218 219 4.760047 CAACCTCGCCCCCTCGTG 62.760 72.222 0.00 0.00 0.00 4.35
222 223 4.899239 CTCGCCCCCTCGTGCATC 62.899 72.222 0.00 0.00 0.00 3.91
226 227 4.838152 CCCCCTCGTGCATCACCG 62.838 72.222 0.00 0.00 0.00 4.94
227 228 3.770040 CCCCTCGTGCATCACCGA 61.770 66.667 0.00 0.00 0.00 4.69
228 229 2.509336 CCCTCGTGCATCACCGAC 60.509 66.667 0.00 0.00 0.00 4.79
229 230 2.573869 CCTCGTGCATCACCGACT 59.426 61.111 0.00 0.00 0.00 4.18
230 231 1.663379 CCCTCGTGCATCACCGACTA 61.663 60.000 0.00 0.00 0.00 2.59
231 232 0.248661 CCTCGTGCATCACCGACTAG 60.249 60.000 0.00 0.00 0.00 2.57
232 233 0.867753 CTCGTGCATCACCGACTAGC 60.868 60.000 0.00 0.00 0.00 3.42
233 234 1.153842 CGTGCATCACCGACTAGCA 60.154 57.895 0.00 0.00 0.00 3.49
234 235 1.142185 CGTGCATCACCGACTAGCAG 61.142 60.000 0.00 0.00 35.66 4.24
235 236 0.173481 GTGCATCACCGACTAGCAGA 59.827 55.000 0.00 0.00 35.66 4.26
236 237 0.457443 TGCATCACCGACTAGCAGAG 59.543 55.000 0.00 0.00 0.00 3.35
237 238 0.249238 GCATCACCGACTAGCAGAGG 60.249 60.000 0.00 0.00 0.00 3.69
238 239 0.387202 CATCACCGACTAGCAGAGGG 59.613 60.000 0.00 0.00 0.00 4.30
239 240 1.395826 ATCACCGACTAGCAGAGGGC 61.396 60.000 0.00 0.00 45.30 5.19
240 241 2.760385 ACCGACTAGCAGAGGGCC 60.760 66.667 0.00 0.00 46.50 5.80
241 242 2.759973 CCGACTAGCAGAGGGCCA 60.760 66.667 6.18 0.00 46.50 5.36
242 243 2.359169 CCGACTAGCAGAGGGCCAA 61.359 63.158 6.18 0.00 46.50 4.52
243 244 1.596934 CGACTAGCAGAGGGCCAAA 59.403 57.895 6.18 0.00 46.50 3.28
244 245 0.179000 CGACTAGCAGAGGGCCAAAT 59.821 55.000 6.18 0.00 46.50 2.32
245 246 1.808133 CGACTAGCAGAGGGCCAAATC 60.808 57.143 6.18 0.00 46.50 2.17
246 247 1.488393 GACTAGCAGAGGGCCAAATCT 59.512 52.381 6.18 1.02 46.50 2.40
247 248 2.700897 GACTAGCAGAGGGCCAAATCTA 59.299 50.000 6.18 0.76 46.50 1.98
248 249 2.436173 ACTAGCAGAGGGCCAAATCTAC 59.564 50.000 6.18 0.00 46.50 2.59
249 250 0.179000 AGCAGAGGGCCAAATCTACG 59.821 55.000 6.18 0.00 46.50 3.51
250 251 0.815615 GCAGAGGGCCAAATCTACGG 60.816 60.000 6.18 0.00 36.11 4.02
251 252 0.541863 CAGAGGGCCAAATCTACGGT 59.458 55.000 6.18 0.00 0.00 4.83
252 253 0.541863 AGAGGGCCAAATCTACGGTG 59.458 55.000 6.18 0.00 0.00 4.94
253 254 0.539986 GAGGGCCAAATCTACGGTGA 59.460 55.000 6.18 0.00 0.00 4.02
254 255 0.541863 AGGGCCAAATCTACGGTGAG 59.458 55.000 6.18 0.00 0.00 3.51
255 256 0.252197 GGGCCAAATCTACGGTGAGT 59.748 55.000 4.39 0.00 0.00 3.41
256 257 1.339727 GGGCCAAATCTACGGTGAGTT 60.340 52.381 4.39 0.00 0.00 3.01
257 258 2.093341 GGGCCAAATCTACGGTGAGTTA 60.093 50.000 4.39 0.00 0.00 2.24
258 259 3.195661 GGCCAAATCTACGGTGAGTTAG 58.804 50.000 0.00 0.00 0.00 2.34
259 260 3.195661 GCCAAATCTACGGTGAGTTAGG 58.804 50.000 0.00 0.00 0.00 2.69
260 261 3.118884 GCCAAATCTACGGTGAGTTAGGA 60.119 47.826 0.00 0.00 0.00 2.94
261 262 4.683832 CCAAATCTACGGTGAGTTAGGAG 58.316 47.826 0.00 0.00 0.00 3.69
262 263 4.441634 CCAAATCTACGGTGAGTTAGGAGG 60.442 50.000 0.00 0.00 0.00 4.30
263 264 3.666345 ATCTACGGTGAGTTAGGAGGT 57.334 47.619 0.00 0.00 0.00 3.85
264 265 2.996631 TCTACGGTGAGTTAGGAGGTC 58.003 52.381 0.00 0.00 0.00 3.85
265 266 1.669779 CTACGGTGAGTTAGGAGGTCG 59.330 57.143 0.00 0.00 0.00 4.79
266 267 0.251077 ACGGTGAGTTAGGAGGTCGT 60.251 55.000 0.00 0.00 0.00 4.34
267 268 0.170561 CGGTGAGTTAGGAGGTCGTG 59.829 60.000 0.00 0.00 0.00 4.35
268 269 0.531200 GGTGAGTTAGGAGGTCGTGG 59.469 60.000 0.00 0.00 0.00 4.94
269 270 0.108756 GTGAGTTAGGAGGTCGTGGC 60.109 60.000 0.00 0.00 0.00 5.01
270 271 1.139095 GAGTTAGGAGGTCGTGGCG 59.861 63.158 0.00 0.00 0.00 5.69
271 272 2.183555 GTTAGGAGGTCGTGGCGG 59.816 66.667 0.00 0.00 0.00 6.13
272 273 3.766691 TTAGGAGGTCGTGGCGGC 61.767 66.667 0.00 0.00 0.00 6.53
286 287 3.770040 CGGCCATGGTCACGGAGA 61.770 66.667 18.31 0.00 0.00 3.71
287 288 2.668632 GGCCATGGTCACGGAGAA 59.331 61.111 12.68 0.00 0.00 2.87
288 289 1.745489 GGCCATGGTCACGGAGAAC 60.745 63.158 12.68 0.00 0.00 3.01
289 290 1.745489 GCCATGGTCACGGAGAACC 60.745 63.158 14.67 0.00 37.38 3.62
290 291 1.078426 CCATGGTCACGGAGAACCC 60.078 63.158 2.57 0.00 36.37 4.11
291 292 1.553690 CCATGGTCACGGAGAACCCT 61.554 60.000 2.57 0.00 36.37 4.34
292 293 1.191535 CATGGTCACGGAGAACCCTA 58.808 55.000 0.00 0.00 36.37 3.53
293 294 1.553248 CATGGTCACGGAGAACCCTAA 59.447 52.381 0.00 0.00 36.37 2.69
294 295 1.946984 TGGTCACGGAGAACCCTAAT 58.053 50.000 0.00 0.00 36.37 1.73
295 296 2.262637 TGGTCACGGAGAACCCTAATT 58.737 47.619 0.00 0.00 36.37 1.40
296 297 2.640826 TGGTCACGGAGAACCCTAATTT 59.359 45.455 0.00 0.00 36.37 1.82
297 298 3.073356 TGGTCACGGAGAACCCTAATTTT 59.927 43.478 0.00 0.00 36.37 1.82
298 299 3.439129 GGTCACGGAGAACCCTAATTTTG 59.561 47.826 0.00 0.00 32.38 2.44
299 300 4.070009 GTCACGGAGAACCCTAATTTTGT 58.930 43.478 0.00 0.00 0.00 2.83
300 301 4.517832 GTCACGGAGAACCCTAATTTTGTT 59.482 41.667 0.00 0.00 0.00 2.83
301 302 4.517453 TCACGGAGAACCCTAATTTTGTTG 59.483 41.667 0.00 0.00 0.00 3.33
302 303 4.517453 CACGGAGAACCCTAATTTTGTTGA 59.483 41.667 0.00 0.00 0.00 3.18
303 304 4.760204 ACGGAGAACCCTAATTTTGTTGAG 59.240 41.667 0.00 0.00 0.00 3.02
304 305 4.156008 CGGAGAACCCTAATTTTGTTGAGG 59.844 45.833 0.00 0.00 0.00 3.86
305 306 5.321927 GGAGAACCCTAATTTTGTTGAGGA 58.678 41.667 0.00 0.00 0.00 3.71
306 307 5.416013 GGAGAACCCTAATTTTGTTGAGGAG 59.584 44.000 0.00 0.00 0.00 3.69
307 308 5.325239 AGAACCCTAATTTTGTTGAGGAGG 58.675 41.667 0.00 0.00 0.00 4.30
308 309 5.074515 AGAACCCTAATTTTGTTGAGGAGGA 59.925 40.000 0.00 0.00 0.00 3.71
309 310 4.923415 ACCCTAATTTTGTTGAGGAGGAG 58.077 43.478 0.00 0.00 0.00 3.69
310 311 3.696548 CCCTAATTTTGTTGAGGAGGAGC 59.303 47.826 0.00 0.00 0.00 4.70
311 312 3.375299 CCTAATTTTGTTGAGGAGGAGCG 59.625 47.826 0.00 0.00 0.00 5.03
312 313 1.826385 ATTTTGTTGAGGAGGAGCGG 58.174 50.000 0.00 0.00 0.00 5.52
313 314 0.250727 TTTTGTTGAGGAGGAGCGGG 60.251 55.000 0.00 0.00 0.00 6.13
314 315 2.748058 TTTGTTGAGGAGGAGCGGGC 62.748 60.000 0.00 0.00 0.00 6.13
315 316 4.821589 GTTGAGGAGGAGCGGGCG 62.822 72.222 0.00 0.00 0.00 6.13
332 333 4.630097 GCTATACGAGGCGGTCAC 57.370 61.111 0.00 0.00 0.00 3.67
333 334 1.370172 GCTATACGAGGCGGTCACG 60.370 63.158 0.00 0.00 44.63 4.35
334 335 1.779025 GCTATACGAGGCGGTCACGA 61.779 60.000 6.41 0.00 44.60 4.35
335 336 0.235144 CTATACGAGGCGGTCACGAG 59.765 60.000 6.41 0.00 44.60 4.18
336 337 1.779025 TATACGAGGCGGTCACGAGC 61.779 60.000 6.41 0.00 44.60 5.03
344 345 2.737376 GGTCACGAGCGGGAACAC 60.737 66.667 5.14 0.00 34.87 3.32
345 346 2.737376 GTCACGAGCGGGAACACC 60.737 66.667 0.00 0.00 0.00 4.16
346 347 3.228017 TCACGAGCGGGAACACCA 61.228 61.111 0.00 0.00 40.22 4.17
347 348 2.280524 CACGAGCGGGAACACCAA 60.281 61.111 0.00 0.00 40.22 3.67
348 349 2.280592 ACGAGCGGGAACACCAAC 60.281 61.111 0.00 0.00 40.22 3.77
349 350 2.280524 CGAGCGGGAACACCAACA 60.281 61.111 0.00 0.00 40.22 3.33
350 351 2.317609 CGAGCGGGAACACCAACAG 61.318 63.158 0.00 0.00 40.22 3.16
351 352 1.966451 GAGCGGGAACACCAACAGG 60.966 63.158 0.00 0.00 40.22 4.00
352 353 2.203294 GCGGGAACACCAACAGGT 60.203 61.111 0.00 0.00 40.22 4.00
361 362 2.508928 CCAACAGGTGTGGGTCGT 59.491 61.111 0.00 0.00 34.34 4.34
362 363 1.153046 CCAACAGGTGTGGGTCGTT 60.153 57.895 0.00 0.00 34.34 3.85
363 364 1.444119 CCAACAGGTGTGGGTCGTTG 61.444 60.000 0.00 0.00 34.34 4.10
364 365 1.153046 AACAGGTGTGGGTCGTTGG 60.153 57.895 0.00 0.00 0.00 3.77
365 366 2.978010 CAGGTGTGGGTCGTTGGC 60.978 66.667 0.00 0.00 0.00 4.52
366 367 4.619227 AGGTGTGGGTCGTTGGCG 62.619 66.667 0.00 0.00 39.92 5.69
372 373 4.517815 GGGTCGTTGGCGCCGATA 62.518 66.667 21.90 8.77 36.62 2.92
373 374 3.259751 GGTCGTTGGCGCCGATAC 61.260 66.667 21.90 20.21 36.62 2.24
374 375 3.613702 GTCGTTGGCGCCGATACG 61.614 66.667 30.70 30.70 36.62 3.06
375 376 3.813143 TCGTTGGCGCCGATACGA 61.813 61.111 33.27 33.27 40.32 3.43
376 377 3.613702 CGTTGGCGCCGATACGAC 61.614 66.667 32.06 18.45 43.05 4.34
377 378 3.613702 GTTGGCGCCGATACGACG 61.614 66.667 21.90 0.00 46.80 5.12
378 379 3.813143 TTGGCGCCGATACGACGA 61.813 61.111 23.90 0.00 46.80 4.20
379 380 4.541482 TGGCGCCGATACGACGAC 62.541 66.667 23.90 1.12 46.80 4.34
381 382 4.580044 GCGCCGATACGACGACGA 62.580 66.667 15.32 0.00 41.08 4.20
382 383 2.423198 CGCCGATACGACGACGAG 60.423 66.667 15.32 0.00 41.08 4.18
383 384 2.052414 GCCGATACGACGACGAGG 60.052 66.667 15.32 11.98 42.66 4.63
384 385 2.052414 CCGATACGACGACGAGGC 60.052 66.667 15.32 1.38 42.66 4.70
385 386 2.052414 CGATACGACGACGAGGCC 60.052 66.667 15.32 0.00 42.66 5.19
386 387 2.052414 GATACGACGACGAGGCCG 60.052 66.667 15.32 2.02 42.66 6.13
387 388 2.512286 ATACGACGACGAGGCCGA 60.512 61.111 15.32 0.00 42.66 5.54
388 389 2.692640 GATACGACGACGAGGCCGAC 62.693 65.000 15.32 0.00 42.66 4.79
394 395 4.773117 GACGAGGCCGACACGTCC 62.773 72.222 25.24 14.23 46.66 4.79
397 398 3.986006 GAGGCCGACACGTCCACA 61.986 66.667 0.00 0.00 0.00 4.17
398 399 3.296709 GAGGCCGACACGTCCACAT 62.297 63.158 0.00 0.00 0.00 3.21
399 400 2.813908 GGCCGACACGTCCACATC 60.814 66.667 0.00 0.00 0.00 3.06
400 401 2.813908 GCCGACACGTCCACATCC 60.814 66.667 0.00 0.00 0.00 3.51
401 402 2.654289 CCGACACGTCCACATCCA 59.346 61.111 0.00 0.00 0.00 3.41
402 403 1.218047 CCGACACGTCCACATCCAT 59.782 57.895 0.00 0.00 0.00 3.41
403 404 0.806102 CCGACACGTCCACATCCATC 60.806 60.000 0.00 0.00 0.00 3.51
404 405 1.139816 CGACACGTCCACATCCATCG 61.140 60.000 0.00 0.00 0.00 3.84
405 406 0.108804 GACACGTCCACATCCATCGT 60.109 55.000 0.00 0.00 35.12 3.73
406 407 0.108804 ACACGTCCACATCCATCGTC 60.109 55.000 0.00 0.00 32.47 4.20
407 408 1.138883 ACGTCCACATCCATCGTCG 59.861 57.895 0.00 0.00 0.00 5.12
408 409 1.310216 ACGTCCACATCCATCGTCGA 61.310 55.000 0.00 0.00 0.00 4.20
409 410 0.866061 CGTCCACATCCATCGTCGAC 60.866 60.000 5.18 5.18 0.00 4.20
410 411 0.527817 GTCCACATCCATCGTCGACC 60.528 60.000 10.58 0.00 0.00 4.79
411 412 0.683179 TCCACATCCATCGTCGACCT 60.683 55.000 10.58 0.00 0.00 3.85
412 413 0.249073 CCACATCCATCGTCGACCTC 60.249 60.000 10.58 0.00 0.00 3.85
413 414 0.455815 CACATCCATCGTCGACCTCA 59.544 55.000 10.58 0.00 0.00 3.86
414 415 0.456221 ACATCCATCGTCGACCTCAC 59.544 55.000 10.58 0.00 0.00 3.51
415 416 0.249073 CATCCATCGTCGACCTCACC 60.249 60.000 10.58 0.00 0.00 4.02
416 417 0.395862 ATCCATCGTCGACCTCACCT 60.396 55.000 10.58 0.00 0.00 4.00
417 418 1.030488 TCCATCGTCGACCTCACCTC 61.030 60.000 10.58 0.00 0.00 3.85
418 419 1.433879 CATCGTCGACCTCACCTCC 59.566 63.158 10.58 0.00 0.00 4.30
419 420 1.001269 ATCGTCGACCTCACCTCCA 60.001 57.895 10.58 0.00 0.00 3.86
420 421 1.313812 ATCGTCGACCTCACCTCCAC 61.314 60.000 10.58 0.00 0.00 4.02
421 422 2.971452 GTCGACCTCACCTCCACC 59.029 66.667 3.51 0.00 0.00 4.61
422 423 2.675423 TCGACCTCACCTCCACCG 60.675 66.667 0.00 0.00 0.00 4.94
423 424 3.760035 CGACCTCACCTCCACCGG 61.760 72.222 0.00 0.00 0.00 5.28
424 425 4.083862 GACCTCACCTCCACCGGC 62.084 72.222 0.00 0.00 0.00 6.13
427 428 3.461773 CTCACCTCCACCGGCGAT 61.462 66.667 9.30 0.00 0.00 4.58
428 429 3.723235 CTCACCTCCACCGGCGATG 62.723 68.421 9.30 0.00 0.00 3.84
429 430 4.838152 CACCTCCACCGGCGATGG 62.838 72.222 16.07 16.07 38.71 3.51
440 441 2.969238 GCGATGGCCAGATCACGG 60.969 66.667 13.05 0.00 0.00 4.94
441 442 2.814604 CGATGGCCAGATCACGGA 59.185 61.111 13.05 0.00 0.00 4.69
442 443 1.592669 CGATGGCCAGATCACGGAC 60.593 63.158 13.05 2.75 0.00 4.79
443 444 1.826024 GATGGCCAGATCACGGACT 59.174 57.895 13.05 0.00 30.26 3.85
444 445 0.249657 GATGGCCAGATCACGGACTC 60.250 60.000 13.05 0.00 30.26 3.36
445 446 1.690219 ATGGCCAGATCACGGACTCC 61.690 60.000 13.05 0.17 30.26 3.85
463 464 2.662866 TCCGACAAGGAGTAGGGTATG 58.337 52.381 0.00 0.00 45.98 2.39
464 465 1.687123 CCGACAAGGAGTAGGGTATGG 59.313 57.143 0.00 0.00 45.00 2.74
465 466 1.687123 CGACAAGGAGTAGGGTATGGG 59.313 57.143 0.00 0.00 0.00 4.00
466 467 2.688817 CGACAAGGAGTAGGGTATGGGA 60.689 54.545 0.00 0.00 0.00 4.37
467 468 2.966516 GACAAGGAGTAGGGTATGGGAG 59.033 54.545 0.00 0.00 0.00 4.30
468 469 2.590611 ACAAGGAGTAGGGTATGGGAGA 59.409 50.000 0.00 0.00 0.00 3.71
469 470 2.966516 CAAGGAGTAGGGTATGGGAGAC 59.033 54.545 0.00 0.00 0.00 3.36
470 471 1.145325 AGGAGTAGGGTATGGGAGACG 59.855 57.143 0.00 0.00 0.00 4.18
471 472 1.618487 GAGTAGGGTATGGGAGACGG 58.382 60.000 0.00 0.00 0.00 4.79
472 473 0.469518 AGTAGGGTATGGGAGACGGC 60.470 60.000 0.00 0.00 0.00 5.68
473 474 1.529948 TAGGGTATGGGAGACGGCG 60.530 63.158 4.80 4.80 0.00 6.46
474 475 1.998444 TAGGGTATGGGAGACGGCGA 61.998 60.000 16.62 0.00 0.00 5.54
475 476 2.416260 GGTATGGGAGACGGCGAC 59.584 66.667 16.62 7.87 0.00 5.19
476 477 2.416260 GTATGGGAGACGGCGACC 59.584 66.667 16.62 13.78 0.00 4.79
477 478 2.836360 TATGGGAGACGGCGACCC 60.836 66.667 25.07 25.07 43.51 4.46
481 482 4.452733 GGAGACGGCGACCCCTTG 62.453 72.222 16.62 0.00 0.00 3.61
482 483 3.692406 GAGACGGCGACCCCTTGT 61.692 66.667 16.62 0.00 0.00 3.16
483 484 3.934391 GAGACGGCGACCCCTTGTG 62.934 68.421 16.62 0.00 0.00 3.33
484 485 4.309950 GACGGCGACCCCTTGTGT 62.310 66.667 16.62 0.00 0.00 3.72
485 486 4.309950 ACGGCGACCCCTTGTGTC 62.310 66.667 16.62 0.00 0.00 3.67
487 488 4.717313 GGCGACCCCTTGTGTCCC 62.717 72.222 0.00 0.00 0.00 4.46
488 489 3.948719 GCGACCCCTTGTGTCCCA 61.949 66.667 0.00 0.00 0.00 4.37
489 490 3.077907 CGACCCCTTGTGTCCCAT 58.922 61.111 0.00 0.00 0.00 4.00
490 491 1.377202 CGACCCCTTGTGTCCCATG 60.377 63.158 0.00 0.00 0.00 3.66
491 492 1.767692 GACCCCTTGTGTCCCATGT 59.232 57.895 0.00 0.00 0.00 3.21
492 493 0.322546 GACCCCTTGTGTCCCATGTC 60.323 60.000 0.00 0.00 0.00 3.06
493 494 1.000896 CCCCTTGTGTCCCATGTCC 60.001 63.158 0.00 0.00 0.00 4.02
494 495 1.500783 CCCCTTGTGTCCCATGTCCT 61.501 60.000 0.00 0.00 0.00 3.85
495 496 1.285280 CCCTTGTGTCCCATGTCCTA 58.715 55.000 0.00 0.00 0.00 2.94
496 497 1.065418 CCCTTGTGTCCCATGTCCTAC 60.065 57.143 0.00 0.00 0.00 3.18
497 498 1.909302 CCTTGTGTCCCATGTCCTACT 59.091 52.381 0.00 0.00 0.00 2.57
498 499 2.093447 CCTTGTGTCCCATGTCCTACTC 60.093 54.545 0.00 0.00 0.00 2.59
499 500 2.623418 TGTGTCCCATGTCCTACTCT 57.377 50.000 0.00 0.00 0.00 3.24
500 501 2.902608 TGTGTCCCATGTCCTACTCTT 58.097 47.619 0.00 0.00 0.00 2.85
501 502 2.832129 TGTGTCCCATGTCCTACTCTTC 59.168 50.000 0.00 0.00 0.00 2.87
502 503 2.168728 GTGTCCCATGTCCTACTCTTCC 59.831 54.545 0.00 0.00 0.00 3.46
503 504 2.044492 TGTCCCATGTCCTACTCTTCCT 59.956 50.000 0.00 0.00 0.00 3.36
504 505 2.696187 GTCCCATGTCCTACTCTTCCTC 59.304 54.545 0.00 0.00 0.00 3.71
505 506 2.043227 CCCATGTCCTACTCTTCCTCC 58.957 57.143 0.00 0.00 0.00 4.30
506 507 2.043227 CCATGTCCTACTCTTCCTCCC 58.957 57.143 0.00 0.00 0.00 4.30
507 508 1.683917 CATGTCCTACTCTTCCTCCCG 59.316 57.143 0.00 0.00 0.00 5.14
508 509 0.033405 TGTCCTACTCTTCCTCCCGG 60.033 60.000 0.00 0.00 0.00 5.73
509 510 1.076192 TCCTACTCTTCCTCCCGGC 60.076 63.158 0.00 0.00 0.00 6.13
510 511 2.491022 CCTACTCTTCCTCCCGGCG 61.491 68.421 0.00 0.00 0.00 6.46
511 512 2.441532 TACTCTTCCTCCCGGCGG 60.442 66.667 21.46 21.46 0.00 6.13
526 527 3.423154 CGGCCGCACCTTCACTTC 61.423 66.667 14.67 0.00 35.61 3.01
527 528 3.423154 GGCCGCACCTTCACTTCG 61.423 66.667 0.00 0.00 34.51 3.79
528 529 4.090057 GCCGCACCTTCACTTCGC 62.090 66.667 0.00 0.00 0.00 4.70
529 530 3.777925 CCGCACCTTCACTTCGCG 61.778 66.667 0.00 0.00 45.25 5.87
530 531 3.777925 CGCACCTTCACTTCGCGG 61.778 66.667 6.13 0.00 42.13 6.46
531 532 3.423154 GCACCTTCACTTCGCGGG 61.423 66.667 6.13 0.00 0.00 6.13
532 533 2.742372 CACCTTCACTTCGCGGGG 60.742 66.667 6.13 1.37 0.00 5.73
533 534 3.239253 ACCTTCACTTCGCGGGGT 61.239 61.111 6.13 2.13 0.00 4.95
534 535 2.032071 CCTTCACTTCGCGGGGTT 59.968 61.111 6.13 0.00 0.00 4.11
535 536 2.033194 CCTTCACTTCGCGGGGTTC 61.033 63.158 6.13 0.00 0.00 3.62
536 537 1.301401 CTTCACTTCGCGGGGTTCA 60.301 57.895 6.13 0.00 0.00 3.18
537 538 1.566018 CTTCACTTCGCGGGGTTCAC 61.566 60.000 6.13 0.00 0.00 3.18
538 539 3.411351 CACTTCGCGGGGTTCACG 61.411 66.667 6.13 0.00 0.00 4.35
539 540 3.608662 ACTTCGCGGGGTTCACGA 61.609 61.111 6.13 0.00 0.00 4.35
540 541 3.110178 CTTCGCGGGGTTCACGAC 61.110 66.667 6.13 0.00 35.20 4.34
548 549 3.530666 GGTTCACGACCGTCGAAC 58.469 61.111 27.03 19.70 43.74 3.95
549 550 1.299316 GGTTCACGACCGTCGAACA 60.299 57.895 27.03 7.46 43.74 3.18
550 551 0.665369 GGTTCACGACCGTCGAACAT 60.665 55.000 27.03 1.66 43.74 2.71
551 552 1.134226 GTTCACGACCGTCGAACATT 58.866 50.000 27.03 1.26 43.74 2.71
552 553 1.133407 TTCACGACCGTCGAACATTG 58.867 50.000 27.03 14.14 43.74 2.82
553 554 0.311477 TCACGACCGTCGAACATTGA 59.689 50.000 27.03 16.16 43.74 2.57
554 555 0.433492 CACGACCGTCGAACATTGAC 59.567 55.000 27.03 0.00 43.74 3.18
555 556 0.031043 ACGACCGTCGAACATTGACA 59.969 50.000 27.03 0.00 43.74 3.58
556 557 0.433492 CGACCGTCGAACATTGACAC 59.567 55.000 16.03 0.00 43.74 3.67
557 558 0.433492 GACCGTCGAACATTGACACG 59.567 55.000 0.00 0.00 36.11 4.49
558 559 0.031043 ACCGTCGAACATTGACACGA 59.969 50.000 0.00 0.00 36.11 4.35
559 560 1.133407 CCGTCGAACATTGACACGAA 58.867 50.000 0.00 0.00 36.11 3.85
560 561 1.523515 CCGTCGAACATTGACACGAAA 59.476 47.619 0.00 0.00 36.11 3.46
561 562 2.409752 CCGTCGAACATTGACACGAAAG 60.410 50.000 0.00 0.00 36.11 2.62
562 563 2.409752 CGTCGAACATTGACACGAAAGG 60.410 50.000 0.00 0.00 36.11 3.11
563 564 2.096417 GTCGAACATTGACACGAAAGGG 60.096 50.000 0.00 0.00 43.28 3.95
564 565 2.139917 CGAACATTGACACGAAAGGGA 58.860 47.619 0.00 0.00 38.45 4.20
565 566 2.546368 CGAACATTGACACGAAAGGGAA 59.454 45.455 0.00 0.00 38.45 3.97
566 567 3.606153 CGAACATTGACACGAAAGGGAAC 60.606 47.826 0.00 0.00 38.45 3.62
567 568 2.925724 ACATTGACACGAAAGGGAACA 58.074 42.857 0.00 0.00 38.45 3.18
568 569 3.283751 ACATTGACACGAAAGGGAACAA 58.716 40.909 0.00 0.00 38.45 2.83
569 570 3.066203 ACATTGACACGAAAGGGAACAAC 59.934 43.478 0.00 0.00 37.23 3.32
570 571 2.404923 TGACACGAAAGGGAACAACA 57.595 45.000 0.00 0.00 38.45 3.33
571 572 2.712709 TGACACGAAAGGGAACAACAA 58.287 42.857 0.00 0.00 38.45 2.83
572 573 2.680841 TGACACGAAAGGGAACAACAAG 59.319 45.455 0.00 0.00 38.45 3.16
573 574 2.940410 GACACGAAAGGGAACAACAAGA 59.060 45.455 0.00 0.00 38.45 3.02
574 575 3.349022 ACACGAAAGGGAACAACAAGAA 58.651 40.909 0.00 0.00 38.45 2.52
575 576 3.951680 ACACGAAAGGGAACAACAAGAAT 59.048 39.130 0.00 0.00 38.45 2.40
576 577 5.127491 ACACGAAAGGGAACAACAAGAATA 58.873 37.500 0.00 0.00 38.45 1.75
577 578 5.768164 ACACGAAAGGGAACAACAAGAATAT 59.232 36.000 0.00 0.00 38.45 1.28
578 579 6.086222 CACGAAAGGGAACAACAAGAATATG 58.914 40.000 0.00 0.00 35.60 1.78
579 580 5.183140 ACGAAAGGGAACAACAAGAATATGG 59.817 40.000 0.00 0.00 0.00 2.74
580 581 5.414454 CGAAAGGGAACAACAAGAATATGGA 59.586 40.000 0.00 0.00 0.00 3.41
581 582 6.403636 CGAAAGGGAACAACAAGAATATGGAG 60.404 42.308 0.00 0.00 0.00 3.86
582 583 4.860022 AGGGAACAACAAGAATATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
583 584 3.954258 GGGAACAACAAGAATATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
584 585 3.381590 GGAACAACAAGAATATGGAGGGC 59.618 47.826 0.00 0.00 0.00 5.19
585 586 2.643551 ACAACAAGAATATGGAGGGCG 58.356 47.619 0.00 0.00 0.00 6.13
586 587 2.238646 ACAACAAGAATATGGAGGGCGA 59.761 45.455 0.00 0.00 0.00 5.54
587 588 3.278574 CAACAAGAATATGGAGGGCGAA 58.721 45.455 0.00 0.00 0.00 4.70
588 589 2.919228 ACAAGAATATGGAGGGCGAAC 58.081 47.619 0.00 0.00 0.00 3.95
589 590 1.867233 CAAGAATATGGAGGGCGAACG 59.133 52.381 0.00 0.00 0.00 3.95
590 591 0.393077 AGAATATGGAGGGCGAACGG 59.607 55.000 0.00 0.00 0.00 4.44
591 592 1.227853 AATATGGAGGGCGAACGGC 60.228 57.895 12.10 12.10 42.51 5.68
592 593 2.989055 AATATGGAGGGCGAACGGCG 62.989 60.000 4.80 4.80 44.92 6.46
601 602 3.186047 CGAACGGCGGCGAAGATT 61.186 61.111 38.93 21.74 36.03 2.40
602 603 2.736682 CGAACGGCGGCGAAGATTT 61.737 57.895 38.93 21.32 36.03 2.17
603 604 1.415288 CGAACGGCGGCGAAGATTTA 61.415 55.000 38.93 0.00 36.03 1.40
604 605 0.300789 GAACGGCGGCGAAGATTTAG 59.699 55.000 38.93 5.69 0.00 1.85
605 606 0.108520 AACGGCGGCGAAGATTTAGA 60.109 50.000 38.93 0.00 0.00 2.10
606 607 0.108520 ACGGCGGCGAAGATTTAGAA 60.109 50.000 38.93 0.00 0.00 2.10
607 608 1.217882 CGGCGGCGAAGATTTAGAAT 58.782 50.000 29.19 0.00 0.00 2.40
608 609 2.223876 ACGGCGGCGAAGATTTAGAATA 60.224 45.455 38.93 0.00 0.00 1.75
609 610 2.408704 CGGCGGCGAAGATTTAGAATAG 59.591 50.000 29.19 0.00 0.00 1.73
610 611 2.737252 GGCGGCGAAGATTTAGAATAGG 59.263 50.000 12.98 0.00 0.00 2.57
611 612 3.391049 GCGGCGAAGATTTAGAATAGGT 58.609 45.455 12.98 0.00 0.00 3.08
612 613 3.808174 GCGGCGAAGATTTAGAATAGGTT 59.192 43.478 12.98 0.00 0.00 3.50
613 614 4.986659 GCGGCGAAGATTTAGAATAGGTTA 59.013 41.667 12.98 0.00 0.00 2.85
614 615 5.107568 GCGGCGAAGATTTAGAATAGGTTAC 60.108 44.000 12.98 0.00 0.00 2.50
615 616 5.981315 CGGCGAAGATTTAGAATAGGTTACA 59.019 40.000 0.00 0.00 0.00 2.41
616 617 6.144080 CGGCGAAGATTTAGAATAGGTTACAG 59.856 42.308 0.00 0.00 0.00 2.74
617 618 7.208080 GGCGAAGATTTAGAATAGGTTACAGA 58.792 38.462 0.00 0.00 0.00 3.41
618 619 7.873505 GGCGAAGATTTAGAATAGGTTACAGAT 59.126 37.037 0.00 0.00 0.00 2.90
629 630 8.860088 AGAATAGGTTACAGATGCTTTTGTTTT 58.140 29.630 0.94 0.00 0.00 2.43
630 631 8.816640 AATAGGTTACAGATGCTTTTGTTTTG 57.183 30.769 0.94 0.00 0.00 2.44
631 632 6.220726 AGGTTACAGATGCTTTTGTTTTGT 57.779 33.333 0.94 0.00 0.00 2.83
642 643 8.659925 ATGCTTTTGTTTTGTGAAATATGTCA 57.340 26.923 0.00 0.00 0.00 3.58
670 671 6.827586 ATGTAATTATTGTGGTTCGGTTGT 57.172 33.333 0.00 0.00 0.00 3.32
671 672 7.925043 ATGTAATTATTGTGGTTCGGTTGTA 57.075 32.000 0.00 0.00 0.00 2.41
672 673 7.741027 TGTAATTATTGTGGTTCGGTTGTAA 57.259 32.000 0.00 0.00 0.00 2.41
673 674 8.338072 TGTAATTATTGTGGTTCGGTTGTAAT 57.662 30.769 0.00 0.00 0.00 1.89
680 681 8.751302 ATTGTGGTTCGGTTGTAATAAAAATC 57.249 30.769 0.00 0.00 0.00 2.17
681 682 7.273320 TGTGGTTCGGTTGTAATAAAAATCA 57.727 32.000 0.00 0.00 0.00 2.57
682 683 7.140048 TGTGGTTCGGTTGTAATAAAAATCAC 58.860 34.615 0.00 0.00 0.00 3.06
689 690 5.865013 GGTTGTAATAAAAATCACCCGGTTG 59.135 40.000 0.00 0.00 0.00 3.77
690 691 6.448852 GTTGTAATAAAAATCACCCGGTTGT 58.551 36.000 0.00 0.00 0.00 3.32
693 694 8.174733 TGTAATAAAAATCACCCGGTTGTTTA 57.825 30.769 0.00 0.00 0.00 2.01
700 701 3.150767 TCACCCGGTTGTTTAAATCCAG 58.849 45.455 0.00 0.00 0.00 3.86
719 720 3.190327 CCAGTTTGAAATGTATGCGGACA 59.810 43.478 0.00 0.00 0.00 4.02
722 723 2.779755 TGAAATGTATGCGGACAGGT 57.220 45.000 0.00 0.00 31.51 4.00
724 725 2.746904 TGAAATGTATGCGGACAGGTTG 59.253 45.455 0.00 0.00 31.51 3.77
725 726 2.779755 AATGTATGCGGACAGGTTGA 57.220 45.000 0.00 0.00 31.51 3.18
726 727 2.024176 ATGTATGCGGACAGGTTGAC 57.976 50.000 0.00 0.00 31.51 3.18
727 728 0.036765 TGTATGCGGACAGGTTGACC 60.037 55.000 0.00 0.00 0.00 4.02
739 745 3.895232 AGGTTGACCTGCTACTGTATG 57.105 47.619 0.97 0.00 46.55 2.39
742 748 3.522553 GTTGACCTGCTACTGTATGACC 58.477 50.000 0.00 0.00 0.00 4.02
746 752 1.268589 CCTGCTACTGTATGACCGTCG 60.269 57.143 0.00 0.00 0.00 5.12
747 753 0.736636 TGCTACTGTATGACCGTCGG 59.263 55.000 10.48 10.48 0.00 4.79
748 754 0.594284 GCTACTGTATGACCGTCGGC 60.594 60.000 12.28 4.89 0.00 5.54
749 755 0.736636 CTACTGTATGACCGTCGGCA 59.263 55.000 12.28 11.03 0.00 5.69
766 772 4.449743 GTCGGCAGACAAGTACAATGTTAA 59.550 41.667 12.41 0.00 46.32 2.01
778 784 9.337091 CAAGTACAATGTTAATTTTAGGGTTCG 57.663 33.333 0.00 0.00 0.00 3.95
779 785 7.532571 AGTACAATGTTAATTTTAGGGTTCGC 58.467 34.615 0.00 0.00 0.00 4.70
855 861 1.072331 AGTCAATGAGGGCGTGAAACT 59.928 47.619 0.00 0.00 31.75 2.66
859 865 1.156736 ATGAGGGCGTGAAACTTTCG 58.843 50.000 0.00 0.00 31.75 3.46
860 866 0.882927 TGAGGGCGTGAAACTTTCGG 60.883 55.000 0.00 0.00 31.75 4.30
926 951 6.477033 GCAAGAACAGAACAGATACGATACAT 59.523 38.462 0.00 0.00 0.00 2.29
984 1015 5.093457 CGTGTATATATAACTCCAGCACGG 58.907 45.833 16.23 0.00 41.97 4.94
985 1016 5.408356 GTGTATATATAACTCCAGCACGGG 58.592 45.833 0.00 0.00 34.36 5.28
1004 1035 1.941812 CAAGGTGCACAAGACGGAC 59.058 57.895 20.43 0.00 0.00 4.79
1011 1042 1.939934 TGCACAAGACGGACAAAGAAG 59.060 47.619 0.00 0.00 0.00 2.85
1013 1044 1.939934 CACAAGACGGACAAAGAAGCA 59.060 47.619 0.00 0.00 0.00 3.91
1017 1048 3.746045 AGACGGACAAAGAAGCAGTAA 57.254 42.857 0.00 0.00 0.00 2.24
1388 2864 4.275662 CGCAAGATCGATCGATATACTCC 58.724 47.826 29.45 16.18 43.02 3.85
1389 2865 4.602995 GCAAGATCGATCGATATACTCCC 58.397 47.826 29.45 15.48 34.60 4.30
1390 2866 4.786927 GCAAGATCGATCGATATACTCCCG 60.787 50.000 29.45 14.93 34.60 5.14
1391 2867 3.468770 AGATCGATCGATATACTCCCGG 58.531 50.000 29.45 0.00 34.60 5.73
1439 2921 2.038689 CTGCATGGCTGGTCTATGAGAT 59.961 50.000 0.00 0.00 35.89 2.75
1469 2951 8.809468 ACTATGATGATATGTACTCGTATGGT 57.191 34.615 0.00 0.00 0.00 3.55
1470 2952 8.894731 ACTATGATGATATGTACTCGTATGGTC 58.105 37.037 0.00 0.00 0.00 4.02
1551 3033 3.803082 GCGCATCGGCATGTGTGT 61.803 61.111 0.30 0.00 41.85 3.72
1552 3034 2.869646 CGCATCGGCATGTGTGTT 59.130 55.556 0.00 0.00 41.24 3.32
1553 3035 1.512522 CGCATCGGCATGTGTGTTG 60.513 57.895 0.00 0.00 41.24 3.33
1554 3036 1.580942 GCATCGGCATGTGTGTTGT 59.419 52.632 0.00 0.00 40.72 3.32
1555 3037 0.730155 GCATCGGCATGTGTGTTGTG 60.730 55.000 0.00 0.00 40.72 3.33
1556 3038 0.873721 CATCGGCATGTGTGTTGTGA 59.126 50.000 0.00 0.00 0.00 3.58
1557 3039 1.266446 CATCGGCATGTGTGTTGTGAA 59.734 47.619 0.00 0.00 0.00 3.18
1558 3040 0.660488 TCGGCATGTGTGTTGTGAAC 59.340 50.000 0.00 0.00 0.00 3.18
1559 3041 0.662619 CGGCATGTGTGTTGTGAACT 59.337 50.000 0.00 0.00 0.00 3.01
1563 3045 2.853594 GCATGTGTGTTGTGAACTTGTG 59.146 45.455 0.00 0.00 0.00 3.33
1566 3048 4.354071 TGTGTGTTGTGAACTTGTGATG 57.646 40.909 0.00 0.00 0.00 3.07
1584 3066 2.047655 TCCGAACGGATGCACCAC 60.048 61.111 12.04 0.00 39.76 4.16
1585 3067 3.124921 CCGAACGGATGCACCACC 61.125 66.667 7.53 0.00 38.90 4.61
1587 3069 2.390599 CGAACGGATGCACCACCAG 61.391 63.158 0.00 0.00 38.90 4.00
1588 3070 1.003839 GAACGGATGCACCACCAGA 60.004 57.895 0.00 0.00 38.90 3.86
1589 3071 1.298859 GAACGGATGCACCACCAGAC 61.299 60.000 0.00 0.00 38.90 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.596477 CGCAAGCTGGCCTCTATCC 60.596 63.158 7.72 0.00 0.00 2.59
1 2 1.596477 CCGCAAGCTGGCCTCTATC 60.596 63.158 7.72 0.00 0.00 2.08
2 3 2.507944 CCGCAAGCTGGCCTCTAT 59.492 61.111 7.72 0.00 0.00 1.98
3 4 3.785859 CCCGCAAGCTGGCCTCTA 61.786 66.667 7.72 0.00 0.00 2.43
13 14 4.749310 AGTGAGCTCGCCCGCAAG 62.749 66.667 23.37 0.00 0.00 4.01
17 18 4.504916 CTCCAGTGAGCTCGCCCG 62.505 72.222 23.37 14.70 0.00 6.13
18 19 4.154347 CCTCCAGTGAGCTCGCCC 62.154 72.222 23.37 6.70 37.29 6.13
19 20 3.363844 GACCTCCAGTGAGCTCGCC 62.364 68.421 23.37 9.37 37.29 5.54
20 21 2.183046 GACCTCCAGTGAGCTCGC 59.817 66.667 19.76 19.76 37.29 5.03
21 22 2.716017 GGGACCTCCAGTGAGCTCG 61.716 68.421 9.64 0.00 37.29 5.03
22 23 3.304251 GGGACCTCCAGTGAGCTC 58.696 66.667 6.82 6.82 37.29 4.09
35 36 4.496670 CGAGTCATCGTTGGGGAC 57.503 61.111 0.00 0.00 44.09 4.46
44 45 1.203928 CGGCTTGTCATCGAGTCATC 58.796 55.000 0.00 0.00 30.56 2.92
45 46 0.179100 CCGGCTTGTCATCGAGTCAT 60.179 55.000 0.00 0.00 30.56 3.06
46 47 1.215382 CCGGCTTGTCATCGAGTCA 59.785 57.895 0.00 0.00 30.56 3.41
47 48 2.167861 GCCGGCTTGTCATCGAGTC 61.168 63.158 22.15 0.00 0.00 3.36
48 49 2.125512 GCCGGCTTGTCATCGAGT 60.126 61.111 22.15 0.00 0.00 4.18
49 50 3.257561 CGCCGGCTTGTCATCGAG 61.258 66.667 26.68 0.00 0.00 4.04
68 69 3.605749 ATGGACCACGCGGACAAGG 62.606 63.158 12.47 6.66 35.59 3.61
69 70 2.047274 ATGGACCACGCGGACAAG 60.047 61.111 12.47 0.00 35.59 3.16
70 71 2.358125 CATGGACCACGCGGACAA 60.358 61.111 12.47 0.00 35.59 3.18
76 77 2.819595 ATGTCGCATGGACCACGC 60.820 61.111 1.43 1.43 45.46 5.34
77 78 1.447663 TCATGTCGCATGGACCACG 60.448 57.895 16.31 0.00 45.46 4.94
78 79 2.089854 GTCATGTCGCATGGACCAC 58.910 57.895 16.31 6.75 45.46 4.16
79 80 4.615901 GTCATGTCGCATGGACCA 57.384 55.556 16.31 0.00 45.46 4.02
80 81 3.813596 GGTCATGTCGCATGGACC 58.186 61.111 16.31 16.62 45.46 4.46
81 82 0.464036 TAGGGTCATGTCGCATGGAC 59.536 55.000 16.31 13.14 46.27 4.02
82 83 0.752658 CTAGGGTCATGTCGCATGGA 59.247 55.000 16.31 4.70 0.00 3.41
83 84 0.752658 TCTAGGGTCATGTCGCATGG 59.247 55.000 16.31 3.69 0.00 3.66
84 85 1.871408 GCTCTAGGGTCATGTCGCATG 60.871 57.143 11.97 11.97 0.00 4.06
85 86 0.390860 GCTCTAGGGTCATGTCGCAT 59.609 55.000 9.48 0.00 0.00 4.73
86 87 0.970427 TGCTCTAGGGTCATGTCGCA 60.970 55.000 9.48 0.00 0.00 5.10
87 88 0.249238 CTGCTCTAGGGTCATGTCGC 60.249 60.000 0.00 0.00 0.00 5.19
88 89 0.387202 CCTGCTCTAGGGTCATGTCG 59.613 60.000 0.00 0.00 43.33 4.35
98 99 3.336318 CGCATGCGCCTGCTCTAG 61.336 66.667 30.34 14.60 43.34 2.43
109 110 2.202222 GTGTCGAAGTGCGCATGC 60.202 61.111 15.91 7.91 40.61 4.06
110 111 2.476051 GGTGTCGAAGTGCGCATG 59.524 61.111 15.91 4.26 40.61 4.06
111 112 3.112075 CGGTGTCGAAGTGCGCAT 61.112 61.111 15.91 0.00 40.61 4.73
112 113 4.578898 ACGGTGTCGAAGTGCGCA 62.579 61.111 5.66 5.66 40.61 6.09
113 114 3.764049 GACGGTGTCGAAGTGCGC 61.764 66.667 0.00 0.00 40.61 6.09
114 115 1.733041 ATGACGGTGTCGAAGTGCG 60.733 57.895 0.00 0.00 40.11 5.34
115 116 0.666274 TCATGACGGTGTCGAAGTGC 60.666 55.000 0.00 0.00 40.11 4.40
116 117 1.996292 ATCATGACGGTGTCGAAGTG 58.004 50.000 0.00 0.00 40.11 3.16
117 118 3.014623 TCTATCATGACGGTGTCGAAGT 58.985 45.455 0.00 0.00 40.11 3.01
118 119 3.549019 CCTCTATCATGACGGTGTCGAAG 60.549 52.174 0.00 0.00 40.11 3.79
119 120 2.357952 CCTCTATCATGACGGTGTCGAA 59.642 50.000 0.00 0.00 40.11 3.71
120 121 1.947456 CCTCTATCATGACGGTGTCGA 59.053 52.381 0.00 0.00 40.11 4.20
121 122 1.947456 TCCTCTATCATGACGGTGTCG 59.053 52.381 0.00 0.00 43.02 4.35
122 123 2.287909 GCTCCTCTATCATGACGGTGTC 60.288 54.545 0.00 0.00 0.00 3.67
123 124 1.683917 GCTCCTCTATCATGACGGTGT 59.316 52.381 0.00 0.00 0.00 4.16
124 125 1.683385 TGCTCCTCTATCATGACGGTG 59.317 52.381 0.00 0.00 0.00 4.94
125 126 1.959985 CTGCTCCTCTATCATGACGGT 59.040 52.381 0.00 0.00 0.00 4.83
126 127 1.959985 ACTGCTCCTCTATCATGACGG 59.040 52.381 0.00 0.00 0.00 4.79
127 128 2.350293 CGACTGCTCCTCTATCATGACG 60.350 54.545 0.00 0.00 0.00 4.35
128 129 2.030363 CCGACTGCTCCTCTATCATGAC 60.030 54.545 0.00 0.00 0.00 3.06
129 130 2.234143 CCGACTGCTCCTCTATCATGA 58.766 52.381 0.00 0.00 0.00 3.07
130 131 1.336702 GCCGACTGCTCCTCTATCATG 60.337 57.143 0.00 0.00 36.87 3.07
131 132 0.965439 GCCGACTGCTCCTCTATCAT 59.035 55.000 0.00 0.00 36.87 2.45
132 133 0.395724 TGCCGACTGCTCCTCTATCA 60.396 55.000 0.00 0.00 42.00 2.15
133 134 0.031449 GTGCCGACTGCTCCTCTATC 59.969 60.000 0.00 0.00 42.00 2.08
134 135 2.119886 GTGCCGACTGCTCCTCTAT 58.880 57.895 0.00 0.00 42.00 1.98
135 136 3.604629 GTGCCGACTGCTCCTCTA 58.395 61.111 0.00 0.00 42.00 2.43
143 144 3.716006 CAGTTGCGGTGCCGACTG 61.716 66.667 15.45 15.13 42.83 3.51
144 145 3.750373 AACAGTTGCGGTGCCGACT 62.750 57.895 15.45 6.97 42.83 4.18
145 146 3.236618 GAACAGTTGCGGTGCCGAC 62.237 63.158 15.45 4.59 42.83 4.79
146 147 2.970324 GAACAGTTGCGGTGCCGA 60.970 61.111 15.45 0.00 42.83 5.54
147 148 3.240606 CTGAACAGTTGCGGTGCCG 62.241 63.158 6.22 6.22 43.09 5.69
148 149 2.186826 ACTGAACAGTTGCGGTGCC 61.187 57.895 1.32 0.00 38.83 5.01
149 150 3.420943 ACTGAACAGTTGCGGTGC 58.579 55.556 1.32 0.00 38.83 5.01
178 179 2.437180 TTGCTCCTCATGCGCCTG 60.437 61.111 4.18 5.39 0.00 4.85
179 180 2.437359 GTTGCTCCTCATGCGCCT 60.437 61.111 4.18 0.00 0.00 5.52
180 181 1.660560 ATTGTTGCTCCTCATGCGCC 61.661 55.000 4.18 0.00 0.00 6.53
181 182 1.016627 TATTGTTGCTCCTCATGCGC 58.983 50.000 0.00 0.00 0.00 6.09
182 183 2.009051 TGTATTGTTGCTCCTCATGCG 58.991 47.619 0.00 0.00 0.00 4.73
183 184 3.428045 GGTTGTATTGTTGCTCCTCATGC 60.428 47.826 0.00 0.00 0.00 4.06
184 185 4.012374 AGGTTGTATTGTTGCTCCTCATG 58.988 43.478 0.00 0.00 0.00 3.07
185 186 4.265073 GAGGTTGTATTGTTGCTCCTCAT 58.735 43.478 0.00 0.00 39.52 2.90
186 187 3.674997 GAGGTTGTATTGTTGCTCCTCA 58.325 45.455 0.00 0.00 39.52 3.86
187 188 2.673368 CGAGGTTGTATTGTTGCTCCTC 59.327 50.000 0.00 0.00 37.29 3.71
188 189 2.699954 CGAGGTTGTATTGTTGCTCCT 58.300 47.619 0.00 0.00 0.00 3.69
189 190 1.130561 GCGAGGTTGTATTGTTGCTCC 59.869 52.381 0.00 0.00 0.00 4.70
190 191 1.130561 GGCGAGGTTGTATTGTTGCTC 59.869 52.381 0.00 0.00 0.00 4.26
191 192 1.165270 GGCGAGGTTGTATTGTTGCT 58.835 50.000 0.00 0.00 0.00 3.91
192 193 0.170339 GGGCGAGGTTGTATTGTTGC 59.830 55.000 0.00 0.00 0.00 4.17
193 194 0.808755 GGGGCGAGGTTGTATTGTTG 59.191 55.000 0.00 0.00 0.00 3.33
194 195 0.323087 GGGGGCGAGGTTGTATTGTT 60.323 55.000 0.00 0.00 0.00 2.83
195 196 1.205460 AGGGGGCGAGGTTGTATTGT 61.205 55.000 0.00 0.00 0.00 2.71
196 197 0.463833 GAGGGGGCGAGGTTGTATTG 60.464 60.000 0.00 0.00 0.00 1.90
197 198 1.912971 GAGGGGGCGAGGTTGTATT 59.087 57.895 0.00 0.00 0.00 1.89
198 199 2.432300 CGAGGGGGCGAGGTTGTAT 61.432 63.158 0.00 0.00 0.00 2.29
199 200 3.072468 CGAGGGGGCGAGGTTGTA 61.072 66.667 0.00 0.00 0.00 2.41
201 202 4.760047 CACGAGGGGGCGAGGTTG 62.760 72.222 0.00 0.00 34.83 3.77
205 206 4.899239 GATGCACGAGGGGGCGAG 62.899 72.222 0.00 0.00 34.83 5.03
209 210 4.838152 CGGTGATGCACGAGGGGG 62.838 72.222 0.00 0.00 34.83 5.40
210 211 3.770040 TCGGTGATGCACGAGGGG 61.770 66.667 0.00 0.00 34.83 4.79
211 212 1.663379 TAGTCGGTGATGCACGAGGG 61.663 60.000 0.00 0.00 40.09 4.30
212 213 0.248661 CTAGTCGGTGATGCACGAGG 60.249 60.000 0.00 0.00 40.09 4.63
213 214 0.867753 GCTAGTCGGTGATGCACGAG 60.868 60.000 0.00 0.00 40.09 4.18
214 215 1.138883 GCTAGTCGGTGATGCACGA 59.861 57.895 0.00 0.00 34.83 4.35
215 216 1.142185 CTGCTAGTCGGTGATGCACG 61.142 60.000 0.00 0.00 34.83 5.34
216 217 0.173481 TCTGCTAGTCGGTGATGCAC 59.827 55.000 0.00 0.00 0.00 4.57
217 218 0.457443 CTCTGCTAGTCGGTGATGCA 59.543 55.000 0.00 0.00 0.00 3.96
218 219 0.249238 CCTCTGCTAGTCGGTGATGC 60.249 60.000 0.00 0.00 0.00 3.91
219 220 0.387202 CCCTCTGCTAGTCGGTGATG 59.613 60.000 0.00 0.00 0.00 3.07
220 221 1.395826 GCCCTCTGCTAGTCGGTGAT 61.396 60.000 0.00 0.00 36.87 3.06
221 222 2.052690 GCCCTCTGCTAGTCGGTGA 61.053 63.158 0.00 0.00 36.87 4.02
222 223 2.496817 GCCCTCTGCTAGTCGGTG 59.503 66.667 0.00 0.00 36.87 4.94
223 224 2.760385 GGCCCTCTGCTAGTCGGT 60.760 66.667 0.00 0.00 40.92 4.69
224 225 1.899437 TTTGGCCCTCTGCTAGTCGG 61.899 60.000 0.00 0.00 40.92 4.79
225 226 0.179000 ATTTGGCCCTCTGCTAGTCG 59.821 55.000 0.00 0.00 40.92 4.18
226 227 1.488393 AGATTTGGCCCTCTGCTAGTC 59.512 52.381 0.00 0.00 40.92 2.59
227 228 1.589414 AGATTTGGCCCTCTGCTAGT 58.411 50.000 0.00 0.00 40.92 2.57
228 229 2.546795 CGTAGATTTGGCCCTCTGCTAG 60.547 54.545 0.00 0.00 40.92 3.42
229 230 1.412710 CGTAGATTTGGCCCTCTGCTA 59.587 52.381 0.00 0.00 40.92 3.49
230 231 0.179000 CGTAGATTTGGCCCTCTGCT 59.821 55.000 0.00 0.00 40.92 4.24
231 232 0.815615 CCGTAGATTTGGCCCTCTGC 60.816 60.000 0.00 2.57 40.16 4.26
232 233 0.541863 ACCGTAGATTTGGCCCTCTG 59.458 55.000 0.00 0.00 0.00 3.35
233 234 0.541863 CACCGTAGATTTGGCCCTCT 59.458 55.000 0.00 2.16 0.00 3.69
234 235 0.539986 TCACCGTAGATTTGGCCCTC 59.460 55.000 0.00 0.00 0.00 4.30
235 236 0.541863 CTCACCGTAGATTTGGCCCT 59.458 55.000 0.00 0.00 0.00 5.19
236 237 0.252197 ACTCACCGTAGATTTGGCCC 59.748 55.000 0.00 0.00 0.00 5.80
237 238 2.109425 AACTCACCGTAGATTTGGCC 57.891 50.000 0.00 0.00 0.00 5.36
238 239 3.118884 TCCTAACTCACCGTAGATTTGGC 60.119 47.826 0.00 0.00 0.00 4.52
239 240 4.441634 CCTCCTAACTCACCGTAGATTTGG 60.442 50.000 0.00 0.00 0.00 3.28
240 241 4.159879 ACCTCCTAACTCACCGTAGATTTG 59.840 45.833 0.00 0.00 0.00 2.32
241 242 4.351127 ACCTCCTAACTCACCGTAGATTT 58.649 43.478 0.00 0.00 0.00 2.17
242 243 3.952967 GACCTCCTAACTCACCGTAGATT 59.047 47.826 0.00 0.00 0.00 2.40
243 244 3.553904 GACCTCCTAACTCACCGTAGAT 58.446 50.000 0.00 0.00 0.00 1.98
244 245 2.679059 CGACCTCCTAACTCACCGTAGA 60.679 54.545 0.00 0.00 0.00 2.59
245 246 1.669779 CGACCTCCTAACTCACCGTAG 59.330 57.143 0.00 0.00 0.00 3.51
246 247 1.003580 ACGACCTCCTAACTCACCGTA 59.996 52.381 0.00 0.00 0.00 4.02
247 248 0.251077 ACGACCTCCTAACTCACCGT 60.251 55.000 0.00 0.00 0.00 4.83
248 249 0.170561 CACGACCTCCTAACTCACCG 59.829 60.000 0.00 0.00 0.00 4.94
249 250 0.531200 CCACGACCTCCTAACTCACC 59.469 60.000 0.00 0.00 0.00 4.02
250 251 0.108756 GCCACGACCTCCTAACTCAC 60.109 60.000 0.00 0.00 0.00 3.51
251 252 1.592400 CGCCACGACCTCCTAACTCA 61.592 60.000 0.00 0.00 0.00 3.41
252 253 1.139095 CGCCACGACCTCCTAACTC 59.861 63.158 0.00 0.00 0.00 3.01
253 254 2.348888 CCGCCACGACCTCCTAACT 61.349 63.158 0.00 0.00 0.00 2.24
254 255 2.183555 CCGCCACGACCTCCTAAC 59.816 66.667 0.00 0.00 0.00 2.34
255 256 3.766691 GCCGCCACGACCTCCTAA 61.767 66.667 0.00 0.00 0.00 2.69
269 270 3.309436 TTCTCCGTGACCATGGCCG 62.309 63.158 13.04 11.84 37.40 6.13
270 271 1.745489 GTTCTCCGTGACCATGGCC 60.745 63.158 13.04 0.00 37.40 5.36
271 272 1.745489 GGTTCTCCGTGACCATGGC 60.745 63.158 13.04 5.35 37.40 4.40
272 273 1.078426 GGGTTCTCCGTGACCATGG 60.078 63.158 11.19 11.19 38.85 3.66
273 274 1.191535 TAGGGTTCTCCGTGACCATG 58.808 55.000 0.00 0.00 41.52 3.66
274 275 1.946984 TTAGGGTTCTCCGTGACCAT 58.053 50.000 0.00 0.00 41.52 3.55
275 276 1.946984 ATTAGGGTTCTCCGTGACCA 58.053 50.000 0.00 0.00 41.52 4.02
276 277 3.345508 AAATTAGGGTTCTCCGTGACC 57.654 47.619 0.00 0.00 41.52 4.02
277 278 4.070009 ACAAAATTAGGGTTCTCCGTGAC 58.930 43.478 0.00 0.00 41.52 3.67
278 279 4.360951 ACAAAATTAGGGTTCTCCGTGA 57.639 40.909 0.00 0.00 41.52 4.35
279 280 4.517453 TCAACAAAATTAGGGTTCTCCGTG 59.483 41.667 0.00 0.00 41.52 4.94
280 281 4.721132 TCAACAAAATTAGGGTTCTCCGT 58.279 39.130 0.00 0.00 41.52 4.69
281 282 4.156008 CCTCAACAAAATTAGGGTTCTCCG 59.844 45.833 0.00 0.00 41.52 4.63
282 283 5.321927 TCCTCAACAAAATTAGGGTTCTCC 58.678 41.667 0.00 0.00 0.00 3.71
283 284 5.416013 CCTCCTCAACAAAATTAGGGTTCTC 59.584 44.000 0.00 0.00 0.00 2.87
284 285 5.074515 TCCTCCTCAACAAAATTAGGGTTCT 59.925 40.000 0.00 0.00 0.00 3.01
285 286 5.321927 TCCTCCTCAACAAAATTAGGGTTC 58.678 41.667 0.00 0.00 0.00 3.62
286 287 5.325239 CTCCTCCTCAACAAAATTAGGGTT 58.675 41.667 0.00 0.00 0.00 4.11
287 288 4.811063 GCTCCTCCTCAACAAAATTAGGGT 60.811 45.833 0.00 0.00 0.00 4.34
288 289 3.696548 GCTCCTCCTCAACAAAATTAGGG 59.303 47.826 0.00 0.00 0.00 3.53
289 290 3.375299 CGCTCCTCCTCAACAAAATTAGG 59.625 47.826 0.00 0.00 0.00 2.69
290 291 3.375299 CCGCTCCTCCTCAACAAAATTAG 59.625 47.826 0.00 0.00 0.00 1.73
291 292 3.343617 CCGCTCCTCCTCAACAAAATTA 58.656 45.455 0.00 0.00 0.00 1.40
292 293 2.162681 CCGCTCCTCCTCAACAAAATT 58.837 47.619 0.00 0.00 0.00 1.82
293 294 1.614317 CCCGCTCCTCCTCAACAAAAT 60.614 52.381 0.00 0.00 0.00 1.82
294 295 0.250727 CCCGCTCCTCCTCAACAAAA 60.251 55.000 0.00 0.00 0.00 2.44
295 296 1.374947 CCCGCTCCTCCTCAACAAA 59.625 57.895 0.00 0.00 0.00 2.83
296 297 3.068881 CCCGCTCCTCCTCAACAA 58.931 61.111 0.00 0.00 0.00 2.83
297 298 3.706373 GCCCGCTCCTCCTCAACA 61.706 66.667 0.00 0.00 0.00 3.33
298 299 4.821589 CGCCCGCTCCTCCTCAAC 62.822 72.222 0.00 0.00 0.00 3.18
315 316 1.370172 CGTGACCGCCTCGTATAGC 60.370 63.158 0.00 0.00 0.00 2.97
316 317 0.235144 CTCGTGACCGCCTCGTATAG 59.765 60.000 0.00 0.00 33.85 1.31
317 318 1.779025 GCTCGTGACCGCCTCGTATA 61.779 60.000 0.00 0.00 33.85 1.47
318 319 3.108343 CTCGTGACCGCCTCGTAT 58.892 61.111 0.00 0.00 33.85 3.06
319 320 3.807538 GCTCGTGACCGCCTCGTA 61.808 66.667 0.00 0.00 33.85 3.43
326 327 4.351938 TGTTCCCGCTCGTGACCG 62.352 66.667 0.00 0.00 0.00 4.79
327 328 2.737376 GTGTTCCCGCTCGTGACC 60.737 66.667 0.00 0.00 0.00 4.02
328 329 2.737376 GGTGTTCCCGCTCGTGAC 60.737 66.667 0.00 0.00 0.00 3.67
329 330 2.798364 TTGGTGTTCCCGCTCGTGA 61.798 57.895 0.00 0.00 35.15 4.35
330 331 2.280524 TTGGTGTTCCCGCTCGTG 60.281 61.111 0.00 0.00 35.15 4.35
331 332 2.280592 GTTGGTGTTCCCGCTCGT 60.281 61.111 0.00 0.00 35.15 4.18
332 333 2.280524 TGTTGGTGTTCCCGCTCG 60.281 61.111 0.00 0.00 35.15 5.03
333 334 1.966451 CCTGTTGGTGTTCCCGCTC 60.966 63.158 0.00 0.00 35.15 5.03
334 335 2.113139 CCTGTTGGTGTTCCCGCT 59.887 61.111 0.00 0.00 35.15 5.52
335 336 2.203294 ACCTGTTGGTGTTCCCGC 60.203 61.111 0.00 0.00 46.51 6.13
344 345 1.153046 AACGACCCACACCTGTTGG 60.153 57.895 0.00 0.00 36.93 3.77
345 346 1.444119 CCAACGACCCACACCTGTTG 61.444 60.000 0.00 0.00 39.58 3.33
346 347 1.153046 CCAACGACCCACACCTGTT 60.153 57.895 0.00 0.00 0.00 3.16
347 348 2.508928 CCAACGACCCACACCTGT 59.491 61.111 0.00 0.00 0.00 4.00
348 349 2.978010 GCCAACGACCCACACCTG 60.978 66.667 0.00 0.00 0.00 4.00
349 350 4.619227 CGCCAACGACCCACACCT 62.619 66.667 0.00 0.00 43.93 4.00
357 358 3.613702 CGTATCGGCGCCAACGAC 61.614 66.667 31.07 20.03 46.80 4.34
358 359 3.813143 TCGTATCGGCGCCAACGA 61.813 61.111 32.39 32.39 43.93 3.85
359 360 3.613702 GTCGTATCGGCGCCAACG 61.614 66.667 29.71 29.71 44.07 4.10
366 367 2.052414 CCTCGTCGTCGTATCGGC 60.052 66.667 1.33 0.00 38.33 5.54
367 368 2.052414 GCCTCGTCGTCGTATCGG 60.052 66.667 1.33 0.79 38.33 4.18
368 369 2.052414 GGCCTCGTCGTCGTATCG 60.052 66.667 0.00 0.00 38.33 2.92
369 370 2.052414 CGGCCTCGTCGTCGTATC 60.052 66.667 0.00 0.00 38.33 2.24
370 371 2.512286 TCGGCCTCGTCGTCGTAT 60.512 61.111 0.00 0.00 38.33 3.06
371 372 3.490759 GTCGGCCTCGTCGTCGTA 61.491 66.667 0.00 0.00 38.33 3.43
383 384 2.813908 GGATGTGGACGTGTCGGC 60.814 66.667 0.00 0.00 0.00 5.54
384 385 0.806102 GATGGATGTGGACGTGTCGG 60.806 60.000 0.00 0.00 0.00 4.79
385 386 1.139816 CGATGGATGTGGACGTGTCG 61.140 60.000 0.00 0.00 0.00 4.35
386 387 0.108804 ACGATGGATGTGGACGTGTC 60.109 55.000 0.00 0.00 35.91 3.67
387 388 0.108804 GACGATGGATGTGGACGTGT 60.109 55.000 0.00 0.00 37.32 4.49
388 389 1.139816 CGACGATGGATGTGGACGTG 61.140 60.000 0.00 0.00 37.32 4.49
389 390 1.138883 CGACGATGGATGTGGACGT 59.861 57.895 0.00 0.00 39.82 4.34
390 391 0.866061 GTCGACGATGGATGTGGACG 60.866 60.000 0.00 0.00 35.79 4.79
391 392 0.527817 GGTCGACGATGGATGTGGAC 60.528 60.000 9.92 0.41 42.26 4.02
392 393 0.683179 AGGTCGACGATGGATGTGGA 60.683 55.000 9.92 0.00 0.00 4.02
393 394 0.249073 GAGGTCGACGATGGATGTGG 60.249 60.000 9.92 0.00 0.00 4.17
394 395 0.455815 TGAGGTCGACGATGGATGTG 59.544 55.000 9.92 0.00 0.00 3.21
395 396 0.456221 GTGAGGTCGACGATGGATGT 59.544 55.000 9.92 0.00 0.00 3.06
396 397 0.249073 GGTGAGGTCGACGATGGATG 60.249 60.000 9.92 0.00 0.00 3.51
397 398 0.395862 AGGTGAGGTCGACGATGGAT 60.396 55.000 9.92 0.00 0.00 3.41
398 399 1.001269 AGGTGAGGTCGACGATGGA 60.001 57.895 9.92 0.00 0.00 3.41
399 400 1.433879 GAGGTGAGGTCGACGATGG 59.566 63.158 9.92 0.00 0.00 3.51
400 401 1.313091 TGGAGGTGAGGTCGACGATG 61.313 60.000 9.92 0.00 0.00 3.84
401 402 1.001269 TGGAGGTGAGGTCGACGAT 60.001 57.895 9.92 0.00 0.00 3.73
402 403 1.970114 GTGGAGGTGAGGTCGACGA 60.970 63.158 9.92 0.00 0.00 4.20
403 404 2.567049 GTGGAGGTGAGGTCGACG 59.433 66.667 9.92 0.00 0.00 5.12
404 405 2.971452 GGTGGAGGTGAGGTCGAC 59.029 66.667 7.13 7.13 0.00 4.20
405 406 2.675423 CGGTGGAGGTGAGGTCGA 60.675 66.667 0.00 0.00 0.00 4.20
406 407 3.760035 CCGGTGGAGGTGAGGTCG 61.760 72.222 0.00 0.00 0.00 4.79
407 408 4.083862 GCCGGTGGAGGTGAGGTC 62.084 72.222 1.90 0.00 0.00 3.85
412 413 4.838152 CCATCGCCGGTGGAGGTG 62.838 72.222 11.98 9.14 42.87 4.00
423 424 2.969238 CCGTGATCTGGCCATCGC 60.969 66.667 5.51 8.02 0.00 4.58
424 425 1.592669 GTCCGTGATCTGGCCATCG 60.593 63.158 5.51 6.67 0.00 3.84
425 426 0.249657 GAGTCCGTGATCTGGCCATC 60.250 60.000 5.51 1.61 0.00 3.51
426 427 1.690219 GGAGTCCGTGATCTGGCCAT 61.690 60.000 5.51 0.00 0.00 4.40
427 428 2.359169 GGAGTCCGTGATCTGGCCA 61.359 63.158 4.71 4.71 0.00 5.36
428 429 2.501610 GGAGTCCGTGATCTGGCC 59.498 66.667 0.00 0.00 0.00 5.36
429 430 2.105128 CGGAGTCCGTGATCTGGC 59.895 66.667 23.83 0.00 42.73 4.85
443 444 2.662866 CATACCCTACTCCTTGTCGGA 58.337 52.381 0.00 0.00 40.30 4.55
444 445 1.687123 CCATACCCTACTCCTTGTCGG 59.313 57.143 0.00 0.00 0.00 4.79
445 446 1.687123 CCCATACCCTACTCCTTGTCG 59.313 57.143 0.00 0.00 0.00 4.35
446 447 2.966516 CTCCCATACCCTACTCCTTGTC 59.033 54.545 0.00 0.00 0.00 3.18
447 448 2.590611 TCTCCCATACCCTACTCCTTGT 59.409 50.000 0.00 0.00 0.00 3.16
448 449 2.966516 GTCTCCCATACCCTACTCCTTG 59.033 54.545 0.00 0.00 0.00 3.61
449 450 2.424523 CGTCTCCCATACCCTACTCCTT 60.425 54.545 0.00 0.00 0.00 3.36
450 451 1.145325 CGTCTCCCATACCCTACTCCT 59.855 57.143 0.00 0.00 0.00 3.69
451 452 1.618487 CGTCTCCCATACCCTACTCC 58.382 60.000 0.00 0.00 0.00 3.85
452 453 1.618487 CCGTCTCCCATACCCTACTC 58.382 60.000 0.00 0.00 0.00 2.59
453 454 0.469518 GCCGTCTCCCATACCCTACT 60.470 60.000 0.00 0.00 0.00 2.57
454 455 1.803366 CGCCGTCTCCCATACCCTAC 61.803 65.000 0.00 0.00 0.00 3.18
455 456 1.529948 CGCCGTCTCCCATACCCTA 60.530 63.158 0.00 0.00 0.00 3.53
456 457 2.838225 CGCCGTCTCCCATACCCT 60.838 66.667 0.00 0.00 0.00 4.34
457 458 2.836360 TCGCCGTCTCCCATACCC 60.836 66.667 0.00 0.00 0.00 3.69
458 459 2.416260 GTCGCCGTCTCCCATACC 59.584 66.667 0.00 0.00 0.00 2.73
459 460 2.416260 GGTCGCCGTCTCCCATAC 59.584 66.667 0.00 0.00 0.00 2.39
460 461 2.836360 GGGTCGCCGTCTCCCATA 60.836 66.667 9.12 0.00 40.79 2.74
464 465 4.452733 CAAGGGGTCGCCGTCTCC 62.453 72.222 0.00 0.00 0.00 3.71
465 466 3.692406 ACAAGGGGTCGCCGTCTC 61.692 66.667 0.00 0.00 0.00 3.36
466 467 4.003788 CACAAGGGGTCGCCGTCT 62.004 66.667 0.00 0.00 0.00 4.18
467 468 4.309950 ACACAAGGGGTCGCCGTC 62.310 66.667 0.00 0.00 0.00 4.79
468 469 4.309950 GACACAAGGGGTCGCCGT 62.310 66.667 0.00 0.00 0.00 5.68
470 471 4.717313 GGGACACAAGGGGTCGCC 62.717 72.222 4.50 0.00 40.98 5.54
471 472 3.948719 TGGGACACAAGGGGTCGC 61.949 66.667 8.55 8.55 45.35 5.19
483 484 2.696187 GAGGAAGAGTAGGACATGGGAC 59.304 54.545 0.00 0.00 0.00 4.46
484 485 2.359355 GGAGGAAGAGTAGGACATGGGA 60.359 54.545 0.00 0.00 0.00 4.37
485 486 2.043227 GGAGGAAGAGTAGGACATGGG 58.957 57.143 0.00 0.00 0.00 4.00
486 487 2.043227 GGGAGGAAGAGTAGGACATGG 58.957 57.143 0.00 0.00 0.00 3.66
487 488 1.683917 CGGGAGGAAGAGTAGGACATG 59.316 57.143 0.00 0.00 0.00 3.21
488 489 2.074729 CGGGAGGAAGAGTAGGACAT 57.925 55.000 0.00 0.00 0.00 3.06
489 490 3.590643 CGGGAGGAAGAGTAGGACA 57.409 57.895 0.00 0.00 0.00 4.02
509 510 3.423154 GAAGTGAAGGTGCGGCCG 61.423 66.667 24.05 24.05 43.70 6.13
510 511 3.423154 CGAAGTGAAGGTGCGGCC 61.423 66.667 0.00 0.00 37.58 6.13
511 512 4.090057 GCGAAGTGAAGGTGCGGC 62.090 66.667 0.00 0.00 0.00 6.53
512 513 3.777925 CGCGAAGTGAAGGTGCGG 61.778 66.667 0.00 0.00 44.65 5.69
514 515 3.423154 CCCGCGAAGTGAAGGTGC 61.423 66.667 8.23 0.00 43.07 5.01
515 516 2.742372 CCCCGCGAAGTGAAGGTG 60.742 66.667 8.23 0.00 43.07 4.00
516 517 2.726822 GAACCCCGCGAAGTGAAGGT 62.727 60.000 8.23 0.00 44.23 3.50
517 518 2.032071 AACCCCGCGAAGTGAAGG 59.968 61.111 8.23 0.00 43.07 3.46
518 519 1.301401 TGAACCCCGCGAAGTGAAG 60.301 57.895 8.23 0.00 43.07 3.02
519 520 1.595929 GTGAACCCCGCGAAGTGAA 60.596 57.895 8.23 0.00 43.07 3.18
520 521 2.029964 GTGAACCCCGCGAAGTGA 59.970 61.111 8.23 0.00 43.07 3.41
529 530 3.211564 TTCGACGGTCGTGAACCCC 62.212 63.158 27.53 0.00 46.27 4.95
530 531 2.018324 GTTCGACGGTCGTGAACCC 61.018 63.158 27.53 8.74 46.27 4.11
531 532 0.665369 ATGTTCGACGGTCGTGAACC 60.665 55.000 27.53 13.53 45.45 3.62
532 533 1.134226 AATGTTCGACGGTCGTGAAC 58.866 50.000 27.53 24.02 41.35 3.18
533 534 1.133407 CAATGTTCGACGGTCGTGAA 58.867 50.000 27.53 14.56 41.35 3.18
534 535 0.311477 TCAATGTTCGACGGTCGTGA 59.689 50.000 27.53 20.48 41.35 4.35
535 536 0.433492 GTCAATGTTCGACGGTCGTG 59.567 55.000 27.53 18.67 41.35 4.35
536 537 0.031043 TGTCAATGTTCGACGGTCGT 59.969 50.000 27.53 7.96 41.35 4.34
537 538 0.433492 GTGTCAATGTTCGACGGTCG 59.567 55.000 23.73 23.73 42.10 4.79
538 539 0.433492 CGTGTCAATGTTCGACGGTC 59.567 55.000 0.00 0.00 36.11 4.79
539 540 0.031043 TCGTGTCAATGTTCGACGGT 59.969 50.000 0.00 0.00 36.11 4.83
540 541 1.133407 TTCGTGTCAATGTTCGACGG 58.867 50.000 0.00 0.00 36.11 4.79
541 542 2.409752 CCTTTCGTGTCAATGTTCGACG 60.410 50.000 0.00 0.00 36.11 5.12
542 543 2.096417 CCCTTTCGTGTCAATGTTCGAC 60.096 50.000 0.00 0.00 32.14 4.20
543 544 2.139917 CCCTTTCGTGTCAATGTTCGA 58.860 47.619 0.00 0.00 0.00 3.71
544 545 2.139917 TCCCTTTCGTGTCAATGTTCG 58.860 47.619 0.00 0.00 0.00 3.95
545 546 3.314080 TGTTCCCTTTCGTGTCAATGTTC 59.686 43.478 0.00 0.00 0.00 3.18
546 547 3.283751 TGTTCCCTTTCGTGTCAATGTT 58.716 40.909 0.00 0.00 0.00 2.71
547 548 2.925724 TGTTCCCTTTCGTGTCAATGT 58.074 42.857 0.00 0.00 0.00 2.71
548 549 3.066064 TGTTGTTCCCTTTCGTGTCAATG 59.934 43.478 0.00 0.00 0.00 2.82
549 550 3.283751 TGTTGTTCCCTTTCGTGTCAAT 58.716 40.909 0.00 0.00 0.00 2.57
550 551 2.712709 TGTTGTTCCCTTTCGTGTCAA 58.287 42.857 0.00 0.00 0.00 3.18
551 552 2.404923 TGTTGTTCCCTTTCGTGTCA 57.595 45.000 0.00 0.00 0.00 3.58
552 553 2.940410 TCTTGTTGTTCCCTTTCGTGTC 59.060 45.455 0.00 0.00 0.00 3.67
553 554 2.993937 TCTTGTTGTTCCCTTTCGTGT 58.006 42.857 0.00 0.00 0.00 4.49
554 555 4.568152 ATTCTTGTTGTTCCCTTTCGTG 57.432 40.909 0.00 0.00 0.00 4.35
555 556 5.183140 CCATATTCTTGTTGTTCCCTTTCGT 59.817 40.000 0.00 0.00 0.00 3.85
556 557 5.414454 TCCATATTCTTGTTGTTCCCTTTCG 59.586 40.000 0.00 0.00 0.00 3.46
557 558 6.127619 CCTCCATATTCTTGTTGTTCCCTTTC 60.128 42.308 0.00 0.00 0.00 2.62
558 559 5.716703 CCTCCATATTCTTGTTGTTCCCTTT 59.283 40.000 0.00 0.00 0.00 3.11
559 560 5.264395 CCTCCATATTCTTGTTGTTCCCTT 58.736 41.667 0.00 0.00 0.00 3.95
560 561 4.325344 CCCTCCATATTCTTGTTGTTCCCT 60.325 45.833 0.00 0.00 0.00 4.20
561 562 3.954258 CCCTCCATATTCTTGTTGTTCCC 59.046 47.826 0.00 0.00 0.00 3.97
562 563 3.381590 GCCCTCCATATTCTTGTTGTTCC 59.618 47.826 0.00 0.00 0.00 3.62
563 564 3.065371 CGCCCTCCATATTCTTGTTGTTC 59.935 47.826 0.00 0.00 0.00 3.18
564 565 3.016736 CGCCCTCCATATTCTTGTTGTT 58.983 45.455 0.00 0.00 0.00 2.83
565 566 2.238646 TCGCCCTCCATATTCTTGTTGT 59.761 45.455 0.00 0.00 0.00 3.32
566 567 2.917933 TCGCCCTCCATATTCTTGTTG 58.082 47.619 0.00 0.00 0.00 3.33
567 568 3.279434 GTTCGCCCTCCATATTCTTGTT 58.721 45.455 0.00 0.00 0.00 2.83
568 569 2.741878 CGTTCGCCCTCCATATTCTTGT 60.742 50.000 0.00 0.00 0.00 3.16
569 570 1.867233 CGTTCGCCCTCCATATTCTTG 59.133 52.381 0.00 0.00 0.00 3.02
570 571 1.202651 CCGTTCGCCCTCCATATTCTT 60.203 52.381 0.00 0.00 0.00 2.52
571 572 0.393077 CCGTTCGCCCTCCATATTCT 59.607 55.000 0.00 0.00 0.00 2.40
572 573 1.228657 GCCGTTCGCCCTCCATATTC 61.229 60.000 0.00 0.00 0.00 1.75
573 574 1.227853 GCCGTTCGCCCTCCATATT 60.228 57.895 0.00 0.00 0.00 1.28
574 575 2.426023 GCCGTTCGCCCTCCATAT 59.574 61.111 0.00 0.00 0.00 1.78
575 576 4.215742 CGCCGTTCGCCCTCCATA 62.216 66.667 0.00 0.00 0.00 2.74
584 585 1.415288 TAAATCTTCGCCGCCGTTCG 61.415 55.000 0.00 0.00 35.54 3.95
585 586 0.300789 CTAAATCTTCGCCGCCGTTC 59.699 55.000 0.00 0.00 35.54 3.95
586 587 0.108520 TCTAAATCTTCGCCGCCGTT 60.109 50.000 0.00 0.00 35.54 4.44
587 588 0.108520 TTCTAAATCTTCGCCGCCGT 60.109 50.000 0.00 0.00 35.54 5.68
588 589 1.217882 ATTCTAAATCTTCGCCGCCG 58.782 50.000 0.00 0.00 0.00 6.46
589 590 2.737252 CCTATTCTAAATCTTCGCCGCC 59.263 50.000 0.00 0.00 0.00 6.13
590 591 3.391049 ACCTATTCTAAATCTTCGCCGC 58.609 45.455 0.00 0.00 0.00 6.53
591 592 5.981315 TGTAACCTATTCTAAATCTTCGCCG 59.019 40.000 0.00 0.00 0.00 6.46
592 593 7.208080 TCTGTAACCTATTCTAAATCTTCGCC 58.792 38.462 0.00 0.00 0.00 5.54
593 594 8.704234 CATCTGTAACCTATTCTAAATCTTCGC 58.296 37.037 0.00 0.00 0.00 4.70
594 595 8.704234 GCATCTGTAACCTATTCTAAATCTTCG 58.296 37.037 0.00 0.00 0.00 3.79
595 596 9.771534 AGCATCTGTAACCTATTCTAAATCTTC 57.228 33.333 0.00 0.00 0.00 2.87
600 601 9.515226 ACAAAAGCATCTGTAACCTATTCTAAA 57.485 29.630 0.00 0.00 0.00 1.85
601 602 9.515226 AACAAAAGCATCTGTAACCTATTCTAA 57.485 29.630 0.00 0.00 0.00 2.10
602 603 9.515226 AAACAAAAGCATCTGTAACCTATTCTA 57.485 29.630 0.00 0.00 0.00 2.10
603 604 8.409358 AAACAAAAGCATCTGTAACCTATTCT 57.591 30.769 0.00 0.00 0.00 2.40
604 605 8.915654 CAAAACAAAAGCATCTGTAACCTATTC 58.084 33.333 0.00 0.00 0.00 1.75
605 606 8.421002 ACAAAACAAAAGCATCTGTAACCTATT 58.579 29.630 0.00 0.00 0.00 1.73
606 607 7.867403 CACAAAACAAAAGCATCTGTAACCTAT 59.133 33.333 0.00 0.00 0.00 2.57
607 608 7.067615 TCACAAAACAAAAGCATCTGTAACCTA 59.932 33.333 0.00 0.00 0.00 3.08
608 609 6.042143 CACAAAACAAAAGCATCTGTAACCT 58.958 36.000 0.00 0.00 0.00 3.50
609 610 6.039616 TCACAAAACAAAAGCATCTGTAACC 58.960 36.000 0.00 0.00 0.00 2.85
610 611 7.518731 TTCACAAAACAAAAGCATCTGTAAC 57.481 32.000 0.00 0.00 0.00 2.50
611 612 8.715191 ATTTCACAAAACAAAAGCATCTGTAA 57.285 26.923 0.00 0.00 0.00 2.41
612 613 9.979578 ATATTTCACAAAACAAAAGCATCTGTA 57.020 25.926 0.00 0.00 0.00 2.74
613 614 8.767085 CATATTTCACAAAACAAAAGCATCTGT 58.233 29.630 0.00 0.00 0.00 3.41
614 615 8.767085 ACATATTTCACAAAACAAAAGCATCTG 58.233 29.630 0.00 0.00 0.00 2.90
615 616 8.891671 ACATATTTCACAAAACAAAAGCATCT 57.108 26.923 0.00 0.00 0.00 2.90
616 617 8.763356 TGACATATTTCACAAAACAAAAGCATC 58.237 29.630 0.00 0.00 0.00 3.91
617 618 8.659925 TGACATATTTCACAAAACAAAAGCAT 57.340 26.923 0.00 0.00 0.00 3.79
618 619 8.484641 TTGACATATTTCACAAAACAAAAGCA 57.515 26.923 0.00 0.00 0.00 3.91
647 648 6.827586 ACAACCGAACCACAATAATTACAT 57.172 33.333 0.00 0.00 0.00 2.29
648 649 7.741027 TTACAACCGAACCACAATAATTACA 57.259 32.000 0.00 0.00 0.00 2.41
654 655 9.843334 GATTTTTATTACAACCGAACCACAATA 57.157 29.630 0.00 0.00 0.00 1.90
657 658 7.140048 GTGATTTTTATTACAACCGAACCACA 58.860 34.615 0.00 0.00 0.00 4.17
658 659 6.583427 GGTGATTTTTATTACAACCGAACCAC 59.417 38.462 0.00 0.00 0.00 4.16
659 660 6.294620 GGGTGATTTTTATTACAACCGAACCA 60.295 38.462 0.00 0.00 30.45 3.67
665 666 5.648178 ACCGGGTGATTTTTATTACAACC 57.352 39.130 6.32 0.00 36.84 3.77
666 667 6.448852 ACAACCGGGTGATTTTTATTACAAC 58.551 36.000 30.18 0.00 0.00 3.32
668 669 6.651975 AACAACCGGGTGATTTTTATTACA 57.348 33.333 30.18 0.00 0.00 2.41
671 672 9.210329 GATTTAAACAACCGGGTGATTTTTATT 57.790 29.630 30.18 11.01 0.00 1.40
672 673 7.820386 GGATTTAAACAACCGGGTGATTTTTAT 59.180 33.333 30.18 14.24 0.00 1.40
673 674 7.153315 GGATTTAAACAACCGGGTGATTTTTA 58.847 34.615 30.18 17.77 0.00 1.52
677 678 4.153411 TGGATTTAAACAACCGGGTGATT 58.847 39.130 30.18 24.36 0.00 2.57
678 679 3.761752 CTGGATTTAAACAACCGGGTGAT 59.238 43.478 30.18 12.98 0.00 3.06
679 680 3.150767 CTGGATTTAAACAACCGGGTGA 58.849 45.455 30.18 2.46 0.00 4.02
680 681 2.888414 ACTGGATTTAAACAACCGGGTG 59.112 45.455 20.60 20.60 33.56 4.61
681 682 3.232720 ACTGGATTTAAACAACCGGGT 57.767 42.857 6.32 0.00 33.56 5.28
682 683 4.038162 TCAAACTGGATTTAAACAACCGGG 59.962 41.667 6.32 0.00 33.56 5.73
689 690 8.372521 CGCATACATTTCAAACTGGATTTAAAC 58.627 33.333 0.00 0.00 0.00 2.01
690 691 7.543868 CCGCATACATTTCAAACTGGATTTAAA 59.456 33.333 0.00 0.00 0.00 1.52
693 694 5.184864 TCCGCATACATTTCAAACTGGATTT 59.815 36.000 0.00 0.00 0.00 2.17
700 701 3.190535 ACCTGTCCGCATACATTTCAAAC 59.809 43.478 0.00 0.00 0.00 2.93
722 723 2.165641 CGGTCATACAGTAGCAGGTCAA 59.834 50.000 0.00 0.00 0.00 3.18
724 725 1.749634 ACGGTCATACAGTAGCAGGTC 59.250 52.381 0.00 0.00 0.00 3.85
725 726 1.749634 GACGGTCATACAGTAGCAGGT 59.250 52.381 2.62 0.00 0.00 4.00
726 727 1.268589 CGACGGTCATACAGTAGCAGG 60.269 57.143 9.10 0.00 0.00 4.85
727 728 1.268589 CCGACGGTCATACAGTAGCAG 60.269 57.143 5.48 0.00 0.00 4.24
732 738 0.963856 TCTGCCGACGGTCATACAGT 60.964 55.000 16.73 0.00 0.00 3.55
734 740 1.245376 TGTCTGCCGACGGTCATACA 61.245 55.000 16.73 17.87 43.21 2.29
739 745 0.731855 GTACTTGTCTGCCGACGGTC 60.732 60.000 16.73 8.54 43.21 4.79
742 748 1.390123 CATTGTACTTGTCTGCCGACG 59.610 52.381 3.71 0.00 43.21 5.12
746 752 9.341899 CTAAAATTAACATTGTACTTGTCTGCC 57.658 33.333 0.00 0.00 0.00 4.85
747 753 9.341899 CCTAAAATTAACATTGTACTTGTCTGC 57.658 33.333 0.00 0.00 0.00 4.26
748 754 9.840427 CCCTAAAATTAACATTGTACTTGTCTG 57.160 33.333 0.00 0.00 0.00 3.51
749 755 9.582648 ACCCTAAAATTAACATTGTACTTGTCT 57.417 29.630 0.00 0.00 0.00 3.41
755 761 6.466730 CGCGAACCCTAAAATTAACATTGTAC 59.533 38.462 0.00 0.00 0.00 2.90
758 764 5.395642 ACGCGAACCCTAAAATTAACATTG 58.604 37.500 15.93 0.00 0.00 2.82
759 765 5.632244 ACGCGAACCCTAAAATTAACATT 57.368 34.783 15.93 0.00 0.00 2.71
766 772 2.081462 CTCCAACGCGAACCCTAAAAT 58.919 47.619 15.93 0.00 0.00 1.82
778 784 1.680338 AATAAGGGCATCTCCAACGC 58.320 50.000 0.00 0.00 36.21 4.84
779 785 3.016736 ACAAATAAGGGCATCTCCAACG 58.983 45.455 0.00 0.00 36.21 4.10
855 861 3.059386 GATGGTTGCGGCCCGAAA 61.059 61.111 7.68 0.00 0.00 3.46
859 865 3.451894 CTTGGATGGTTGCGGCCC 61.452 66.667 0.00 0.00 0.00 5.80
860 866 4.133796 GCTTGGATGGTTGCGGCC 62.134 66.667 0.00 0.00 0.00 6.13
984 1015 2.639286 CGTCTTGTGCACCTTGCC 59.361 61.111 15.69 0.00 44.23 4.52
985 1016 1.891919 TCCGTCTTGTGCACCTTGC 60.892 57.895 15.69 1.38 45.29 4.01
1004 1035 4.611355 CGTCCATGTGTTACTGCTTCTTTG 60.611 45.833 0.00 0.00 0.00 2.77
1011 1042 1.419922 CGCGTCCATGTGTTACTGC 59.580 57.895 0.00 0.00 0.00 4.40
1013 1044 0.736325 GAGCGCGTCCATGTGTTACT 60.736 55.000 8.43 0.00 0.00 2.24
1017 1048 1.738099 GAAGAGCGCGTCCATGTGT 60.738 57.895 8.43 0.00 0.00 3.72
1280 2747 3.952675 CCAAATCCATCGCCGCCG 61.953 66.667 0.00 0.00 0.00 6.46
1281 2748 4.270376 GCCAAATCCATCGCCGCC 62.270 66.667 0.00 0.00 0.00 6.13
1282 2749 4.270376 GGCCAAATCCATCGCCGC 62.270 66.667 0.00 0.00 0.00 6.53
1283 2750 2.063541 GAAGGCCAAATCCATCGCCG 62.064 60.000 5.01 0.00 46.36 6.46
1284 2751 1.037030 TGAAGGCCAAATCCATCGCC 61.037 55.000 5.01 0.00 41.96 5.54
1285 2752 0.817013 TTGAAGGCCAAATCCATCGC 59.183 50.000 5.01 0.00 0.00 4.58
1286 2753 1.406539 CCTTGAAGGCCAAATCCATCG 59.593 52.381 5.01 0.00 33.76 3.84
1335 2811 0.941463 CATCGATCTTTCCCGCTCGG 60.941 60.000 0.00 0.48 0.00 4.63
1388 2864 0.535780 ACATACATGCTCATGGCCGG 60.536 55.000 13.69 0.00 42.91 6.13
1389 2865 2.168326 TACATACATGCTCATGGCCG 57.832 50.000 13.69 4.49 42.91 6.13
1390 2866 3.189910 CACATACATACATGCTCATGGCC 59.810 47.826 13.69 0.00 42.91 5.36
1391 2867 3.365666 GCACATACATACATGCTCATGGC 60.366 47.826 13.69 0.00 42.91 4.40
1455 2937 3.504906 CCATACGGACCATACGAGTACAT 59.495 47.826 0.00 0.00 34.93 2.29
1456 2938 2.880268 CCATACGGACCATACGAGTACA 59.120 50.000 0.00 0.00 34.93 2.90
1469 2951 0.324368 AGCTCTGGTGTCCATACGGA 60.324 55.000 0.00 0.00 39.79 4.69
1470 2952 1.338337 CTAGCTCTGGTGTCCATACGG 59.662 57.143 0.00 0.00 30.82 4.02
1551 3033 3.186702 TCGGACATCACAAGTTCACAA 57.813 42.857 0.00 0.00 0.00 3.33
1552 3034 2.869801 GTTCGGACATCACAAGTTCACA 59.130 45.455 0.00 0.00 0.00 3.58
1553 3035 2.096909 CGTTCGGACATCACAAGTTCAC 60.097 50.000 0.00 0.00 0.00 3.18
1554 3036 2.131972 CGTTCGGACATCACAAGTTCA 58.868 47.619 0.00 0.00 0.00 3.18
1555 3037 1.459592 CCGTTCGGACATCACAAGTTC 59.540 52.381 5.19 0.00 0.00 3.01
1556 3038 1.069513 TCCGTTCGGACATCACAAGTT 59.930 47.619 10.00 0.00 0.00 2.66
1557 3039 0.677288 TCCGTTCGGACATCACAAGT 59.323 50.000 10.00 0.00 0.00 3.16
1558 3040 1.660607 CATCCGTTCGGACATCACAAG 59.339 52.381 16.22 0.00 37.10 3.16
1559 3041 1.720805 CATCCGTTCGGACATCACAA 58.279 50.000 16.22 0.00 37.10 3.33
1563 3045 1.429148 GGTGCATCCGTTCGGACATC 61.429 60.000 16.22 7.62 37.10 3.06
1566 3048 2.047655 TGGTGCATCCGTTCGGAC 60.048 61.111 16.22 5.58 37.10 4.79
1583 3065 3.991051 CGCACCTGGTCGTCTGGT 61.991 66.667 0.00 4.80 46.82 4.00
1584 3066 3.680786 TCGCACCTGGTCGTCTGG 61.681 66.667 15.00 3.76 39.98 3.86
1585 3067 2.430921 GTCGCACCTGGTCGTCTG 60.431 66.667 15.00 0.00 0.00 3.51
1659 3182 4.056125 GCCGGAAACTGGCAAGGC 62.056 66.667 5.05 0.00 45.41 4.35
2241 3915 3.933048 GAGACCCTCCACGTCGGGA 62.933 68.421 18.31 7.68 43.44 5.14
2278 3952 0.317160 TTGATGTGCGACGAGAGGTT 59.683 50.000 0.00 0.00 0.00 3.50
2279 3953 0.388649 GTTGATGTGCGACGAGAGGT 60.389 55.000 0.00 0.00 0.00 3.85
2328 4002 3.809832 TGTTACAGAACTTGCTCTTGAGC 59.190 43.478 15.01 15.01 36.45 4.26
2430 4104 1.690845 GGGAGATCCTCTGCTGAAGGA 60.691 57.143 12.00 12.00 35.01 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.