Multiple sequence alignment - TraesCS7B01G073900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G073900 chr7B 100.000 4685 0 0 1 4685 83906793 83902109 0.000000e+00 8652
1 TraesCS7B01G073900 chr7B 87.255 102 12 1 1953 2053 88840334 88840233 1.070000e-21 115
2 TraesCS7B01G073900 chr7B 90.476 84 8 0 1970 2053 6508370 6508453 1.380000e-20 111
3 TraesCS7B01G073900 chr7D 88.992 3225 156 100 1454 4535 122844168 122847336 0.000000e+00 3805
4 TraesCS7B01G073900 chr7D 88.423 1287 55 42 208 1463 122842914 122844137 0.000000e+00 1465
5 TraesCS7B01G073900 chr7D 93.506 154 9 1 4533 4685 122847439 122847592 1.310000e-55 228
6 TraesCS7B01G073900 chr7A 87.071 3202 166 104 1491 4548 125713489 125716586 0.000000e+00 3391
7 TraesCS7B01G073900 chr7A 85.859 1287 59 46 208 1451 125712201 125713407 0.000000e+00 1254
8 TraesCS7B01G073900 chr7A 93.662 142 8 1 4545 4685 125716672 125716813 1.320000e-50 211
9 TraesCS7B01G073900 chr1B 96.939 196 5 1 1 195 612400304 612400499 1.260000e-85 327
10 TraesCS7B01G073900 chr4B 97.340 188 5 0 1 188 70104592 70104405 2.100000e-83 320
11 TraesCS7B01G073900 chr4B 90.476 84 8 0 1970 2053 649511517 649511600 1.380000e-20 111
12 TraesCS7B01G073900 chr5B 96.809 188 5 1 1 188 578920279 578920093 3.520000e-81 313
13 TraesCS7B01G073900 chr5B 95.745 188 8 0 1 188 641391186 641391373 2.120000e-78 303
14 TraesCS7B01G073900 chr5B 90.476 84 8 0 1970 2053 325493409 325493492 1.380000e-20 111
15 TraesCS7B01G073900 chr5B 90.476 84 8 0 1970 2053 469466470 469466387 1.380000e-20 111
16 TraesCS7B01G073900 chr2B 95.855 193 8 0 1 193 679037180 679036988 3.520000e-81 313
17 TraesCS7B01G073900 chr2B 95.385 195 8 1 1 195 737765117 737765310 4.550000e-80 309
18 TraesCS7B01G073900 chr2B 95.288 191 9 0 1 191 554915665 554915475 2.120000e-78 303
19 TraesCS7B01G073900 chr2B 95.263 190 9 0 1 190 27625953 27626142 7.620000e-78 302
20 TraesCS7B01G073900 chr2B 90.476 84 8 0 1970 2053 785018406 785018489 1.380000e-20 111
21 TraesCS7B01G073900 chr4A 96.277 188 7 0 1 188 689946959 689946772 4.550000e-80 309
22 TraesCS7B01G073900 chr3B 90.476 84 8 0 1970 2053 56840364 56840281 1.380000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G073900 chr7B 83902109 83906793 4684 True 8652.000000 8652 100.000 1 4685 1 chr7B.!!$R1 4684
1 TraesCS7B01G073900 chr7D 122842914 122847592 4678 False 1832.666667 3805 90.307 208 4685 3 chr7D.!!$F1 4477
2 TraesCS7B01G073900 chr7A 125712201 125716813 4612 False 1618.666667 3391 88.864 208 4685 3 chr7A.!!$F1 4477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.035056 GCCTTATGCAGGGCGGATAT 60.035 55.0 11.43 0.0 44.16 1.63 F
1756 1911 0.038526 TCACGTCGGCTTTTCTCTCC 60.039 55.0 0.00 0.0 0.00 3.71 F
2196 2405 0.108329 ATTTACCAGCTGTCGGTCGG 60.108 55.0 13.81 0.0 37.99 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2229 0.027455 TTTCGCAAGCACAACAGACG 59.973 50.000 0.00 0.00 37.18 4.18 R
2688 2901 1.011574 GCGGCGCAATTAAGGTACG 60.012 57.895 29.21 0.00 0.00 3.67 R
4143 4442 0.668535 CTGGACCGATGCTCGTATCA 59.331 55.000 5.15 0.69 38.40 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.813513 AGTGTAGTGTCATGCAAGCC 58.186 50.000 0.00 0.00 0.00 4.35
21 22 1.349026 AGTGTAGTGTCATGCAAGCCT 59.651 47.619 0.00 0.00 0.00 4.58
22 23 2.154462 GTGTAGTGTCATGCAAGCCTT 58.846 47.619 0.00 0.00 0.00 4.35
23 24 2.160417 GTGTAGTGTCATGCAAGCCTTC 59.840 50.000 0.00 0.00 0.00 3.46
24 25 2.224499 TGTAGTGTCATGCAAGCCTTCA 60.224 45.455 0.00 0.00 0.00 3.02
25 26 2.211250 AGTGTCATGCAAGCCTTCAT 57.789 45.000 0.00 0.00 0.00 2.57
26 27 2.522185 AGTGTCATGCAAGCCTTCATT 58.478 42.857 0.00 0.00 0.00 2.57
27 28 2.895404 AGTGTCATGCAAGCCTTCATTT 59.105 40.909 0.00 0.00 0.00 2.32
28 29 4.081406 AGTGTCATGCAAGCCTTCATTTA 58.919 39.130 0.00 0.00 0.00 1.40
29 30 4.708421 AGTGTCATGCAAGCCTTCATTTAT 59.292 37.500 0.00 0.00 0.00 1.40
30 31 5.186409 AGTGTCATGCAAGCCTTCATTTATT 59.814 36.000 0.00 0.00 0.00 1.40
31 32 6.377996 AGTGTCATGCAAGCCTTCATTTATTA 59.622 34.615 0.00 0.00 0.00 0.98
32 33 7.069085 AGTGTCATGCAAGCCTTCATTTATTAT 59.931 33.333 0.00 0.00 0.00 1.28
33 34 7.168637 GTGTCATGCAAGCCTTCATTTATTATG 59.831 37.037 0.00 0.00 0.00 1.90
34 35 7.147863 TGTCATGCAAGCCTTCATTTATTATGT 60.148 33.333 0.00 0.00 0.00 2.29
35 36 7.707893 GTCATGCAAGCCTTCATTTATTATGTT 59.292 33.333 0.00 0.00 0.00 2.71
36 37 7.707464 TCATGCAAGCCTTCATTTATTATGTTG 59.293 33.333 0.00 0.00 0.00 3.33
37 38 6.934056 TGCAAGCCTTCATTTATTATGTTGT 58.066 32.000 0.00 0.00 0.00 3.32
38 39 8.060931 TGCAAGCCTTCATTTATTATGTTGTA 57.939 30.769 0.00 0.00 0.00 2.41
39 40 8.190122 TGCAAGCCTTCATTTATTATGTTGTAG 58.810 33.333 0.00 0.00 0.00 2.74
40 41 8.405531 GCAAGCCTTCATTTATTATGTTGTAGA 58.594 33.333 0.00 0.00 0.00 2.59
41 42 9.722056 CAAGCCTTCATTTATTATGTTGTAGAC 57.278 33.333 0.00 0.00 0.00 2.59
42 43 9.686683 AAGCCTTCATTTATTATGTTGTAGACT 57.313 29.630 0.00 0.00 0.00 3.24
43 44 9.331282 AGCCTTCATTTATTATGTTGTAGACTC 57.669 33.333 0.00 0.00 0.00 3.36
44 45 9.109393 GCCTTCATTTATTATGTTGTAGACTCA 57.891 33.333 0.00 0.00 0.00 3.41
56 57 7.447374 TGTTGTAGACTCATTTTGTATTGGG 57.553 36.000 0.00 0.00 0.00 4.12
57 58 6.432783 TGTTGTAGACTCATTTTGTATTGGGG 59.567 38.462 0.00 0.00 0.00 4.96
58 59 6.134535 TGTAGACTCATTTTGTATTGGGGT 57.865 37.500 0.00 0.00 0.00 4.95
59 60 5.943416 TGTAGACTCATTTTGTATTGGGGTG 59.057 40.000 0.00 0.00 0.00 4.61
60 61 3.763897 AGACTCATTTTGTATTGGGGTGC 59.236 43.478 0.00 0.00 0.00 5.01
61 62 2.491693 ACTCATTTTGTATTGGGGTGCG 59.508 45.455 0.00 0.00 0.00 5.34
62 63 2.491693 CTCATTTTGTATTGGGGTGCGT 59.508 45.455 0.00 0.00 0.00 5.24
63 64 2.894126 TCATTTTGTATTGGGGTGCGTT 59.106 40.909 0.00 0.00 0.00 4.84
64 65 4.079970 TCATTTTGTATTGGGGTGCGTTA 58.920 39.130 0.00 0.00 0.00 3.18
65 66 4.707448 TCATTTTGTATTGGGGTGCGTTAT 59.293 37.500 0.00 0.00 0.00 1.89
66 67 4.442375 TTTTGTATTGGGGTGCGTTATG 57.558 40.909 0.00 0.00 0.00 1.90
67 68 2.791347 TGTATTGGGGTGCGTTATGT 57.209 45.000 0.00 0.00 0.00 2.29
68 69 3.074675 TGTATTGGGGTGCGTTATGTT 57.925 42.857 0.00 0.00 0.00 2.71
69 70 4.217836 TGTATTGGGGTGCGTTATGTTA 57.782 40.909 0.00 0.00 0.00 2.41
70 71 4.783055 TGTATTGGGGTGCGTTATGTTAT 58.217 39.130 0.00 0.00 0.00 1.89
71 72 4.576873 TGTATTGGGGTGCGTTATGTTATG 59.423 41.667 0.00 0.00 0.00 1.90
72 73 2.045561 TGGGGTGCGTTATGTTATGG 57.954 50.000 0.00 0.00 0.00 2.74
73 74 1.282447 TGGGGTGCGTTATGTTATGGT 59.718 47.619 0.00 0.00 0.00 3.55
74 75 2.504585 TGGGGTGCGTTATGTTATGGTA 59.495 45.455 0.00 0.00 0.00 3.25
75 76 3.054582 TGGGGTGCGTTATGTTATGGTAA 60.055 43.478 0.00 0.00 0.00 2.85
76 77 3.313249 GGGGTGCGTTATGTTATGGTAAC 59.687 47.826 0.00 0.00 0.00 2.50
98 99 6.693315 ACATATTATGTTACCACAAGCACC 57.307 37.500 3.40 0.00 41.63 5.01
99 100 6.423182 ACATATTATGTTACCACAAGCACCT 58.577 36.000 3.40 0.00 41.63 4.00
100 101 6.542370 ACATATTATGTTACCACAAGCACCTC 59.458 38.462 3.40 0.00 41.63 3.85
101 102 4.634012 TTATGTTACCACAAGCACCTCT 57.366 40.909 0.00 0.00 36.16 3.69
102 103 2.543777 TGTTACCACAAGCACCTCTC 57.456 50.000 0.00 0.00 0.00 3.20
103 104 2.047061 TGTTACCACAAGCACCTCTCT 58.953 47.619 0.00 0.00 0.00 3.10
104 105 2.037251 TGTTACCACAAGCACCTCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
105 106 1.267121 TACCACAAGCACCTCTCTCC 58.733 55.000 0.00 0.00 0.00 3.71
106 107 0.472734 ACCACAAGCACCTCTCTCCT 60.473 55.000 0.00 0.00 0.00 3.69
107 108 0.248843 CCACAAGCACCTCTCTCCTC 59.751 60.000 0.00 0.00 0.00 3.71
108 109 0.972134 CACAAGCACCTCTCTCCTCA 59.028 55.000 0.00 0.00 0.00 3.86
109 110 1.554160 CACAAGCACCTCTCTCCTCAT 59.446 52.381 0.00 0.00 0.00 2.90
110 111 2.027377 CACAAGCACCTCTCTCCTCATT 60.027 50.000 0.00 0.00 0.00 2.57
111 112 3.196469 CACAAGCACCTCTCTCCTCATTA 59.804 47.826 0.00 0.00 0.00 1.90
112 113 3.840666 ACAAGCACCTCTCTCCTCATTAA 59.159 43.478 0.00 0.00 0.00 1.40
113 114 4.187694 CAAGCACCTCTCTCCTCATTAAC 58.812 47.826 0.00 0.00 0.00 2.01
114 115 3.718723 AGCACCTCTCTCCTCATTAACT 58.281 45.455 0.00 0.00 0.00 2.24
115 116 4.100373 AGCACCTCTCTCCTCATTAACTT 58.900 43.478 0.00 0.00 0.00 2.66
116 117 4.161377 AGCACCTCTCTCCTCATTAACTTC 59.839 45.833 0.00 0.00 0.00 3.01
117 118 4.081420 GCACCTCTCTCCTCATTAACTTCA 60.081 45.833 0.00 0.00 0.00 3.02
118 119 5.396213 GCACCTCTCTCCTCATTAACTTCAT 60.396 44.000 0.00 0.00 0.00 2.57
119 120 6.047870 CACCTCTCTCCTCATTAACTTCATG 58.952 44.000 0.00 0.00 0.00 3.07
120 121 5.055812 CCTCTCTCCTCATTAACTTCATGC 58.944 45.833 0.00 0.00 0.00 4.06
121 122 5.028549 TCTCTCCTCATTAACTTCATGCC 57.971 43.478 0.00 0.00 0.00 4.40
122 123 4.471025 TCTCTCCTCATTAACTTCATGCCA 59.529 41.667 0.00 0.00 0.00 4.92
123 124 4.517285 TCTCCTCATTAACTTCATGCCAC 58.483 43.478 0.00 0.00 0.00 5.01
124 125 4.019411 TCTCCTCATTAACTTCATGCCACA 60.019 41.667 0.00 0.00 0.00 4.17
125 126 4.858850 TCCTCATTAACTTCATGCCACAT 58.141 39.130 0.00 0.00 0.00 3.21
126 127 6.000246 TCCTCATTAACTTCATGCCACATA 58.000 37.500 0.00 0.00 0.00 2.29
127 128 6.422333 TCCTCATTAACTTCATGCCACATAA 58.578 36.000 0.00 0.00 0.00 1.90
128 129 6.543465 TCCTCATTAACTTCATGCCACATAAG 59.457 38.462 0.00 0.00 0.00 1.73
129 130 6.135290 TCATTAACTTCATGCCACATAAGC 57.865 37.500 0.00 0.00 0.00 3.09
130 131 5.651576 TCATTAACTTCATGCCACATAAGCA 59.348 36.000 0.00 0.00 45.94 3.91
141 142 6.806388 TGCCACATAAGCATATATGTCTTG 57.194 37.500 22.21 14.67 43.00 3.02
142 143 5.706833 TGCCACATAAGCATATATGTCTTGG 59.293 40.000 22.21 18.33 43.00 3.61
143 144 5.124457 GCCACATAAGCATATATGTCTTGGG 59.876 44.000 22.21 18.92 43.00 4.12
144 145 6.475504 CCACATAAGCATATATGTCTTGGGA 58.524 40.000 22.21 10.62 43.00 4.37
145 146 7.114754 CCACATAAGCATATATGTCTTGGGAT 58.885 38.462 22.21 11.85 43.00 3.85
146 147 7.066645 CCACATAAGCATATATGTCTTGGGATG 59.933 40.741 22.21 19.89 43.00 3.51
147 148 7.609146 CACATAAGCATATATGTCTTGGGATGT 59.391 37.037 22.21 20.29 43.00 3.06
148 149 7.609146 ACATAAGCATATATGTCTTGGGATGTG 59.391 37.037 22.21 15.66 41.50 3.21
149 150 4.330250 AGCATATATGTCTTGGGATGTGC 58.670 43.478 14.14 0.00 0.00 4.57
150 151 4.042560 AGCATATATGTCTTGGGATGTGCT 59.957 41.667 14.14 0.00 34.68 4.40
151 152 5.249163 AGCATATATGTCTTGGGATGTGCTA 59.751 40.000 14.14 0.00 37.43 3.49
152 153 6.069789 AGCATATATGTCTTGGGATGTGCTAT 60.070 38.462 14.14 0.00 37.43 2.97
153 154 6.037940 GCATATATGTCTTGGGATGTGCTATG 59.962 42.308 14.14 0.00 0.00 2.23
154 155 3.939740 ATGTCTTGGGATGTGCTATGT 57.060 42.857 0.00 0.00 0.00 2.29
155 156 3.719268 TGTCTTGGGATGTGCTATGTT 57.281 42.857 0.00 0.00 0.00 2.71
156 157 4.835284 TGTCTTGGGATGTGCTATGTTA 57.165 40.909 0.00 0.00 0.00 2.41
157 158 4.513442 TGTCTTGGGATGTGCTATGTTAC 58.487 43.478 0.00 0.00 0.00 2.50
158 159 4.225042 TGTCTTGGGATGTGCTATGTTACT 59.775 41.667 0.00 0.00 0.00 2.24
159 160 5.423931 TGTCTTGGGATGTGCTATGTTACTA 59.576 40.000 0.00 0.00 0.00 1.82
160 161 5.753921 GTCTTGGGATGTGCTATGTTACTAC 59.246 44.000 0.00 0.00 0.00 2.73
161 162 4.316205 TGGGATGTGCTATGTTACTACG 57.684 45.455 0.00 0.00 0.00 3.51
162 163 3.702548 TGGGATGTGCTATGTTACTACGT 59.297 43.478 0.00 0.00 0.00 3.57
163 164 4.888823 TGGGATGTGCTATGTTACTACGTA 59.111 41.667 0.00 0.00 0.00 3.57
164 165 5.360429 TGGGATGTGCTATGTTACTACGTAA 59.640 40.000 0.00 0.00 0.00 3.18
185 186 7.076983 CGTAAGTTACTTCCACTATAGCTAGC 58.923 42.308 6.62 6.62 0.00 3.42
186 187 6.408107 AAGTTACTTCCACTATAGCTAGCC 57.592 41.667 12.13 0.00 0.00 3.93
187 188 5.707495 AGTTACTTCCACTATAGCTAGCCT 58.293 41.667 12.13 1.34 0.00 4.58
188 189 6.137559 AGTTACTTCCACTATAGCTAGCCTT 58.862 40.000 12.13 1.13 0.00 4.35
189 190 7.296098 AGTTACTTCCACTATAGCTAGCCTTA 58.704 38.462 12.13 2.43 0.00 2.69
190 191 7.951245 AGTTACTTCCACTATAGCTAGCCTTAT 59.049 37.037 12.13 6.41 0.00 1.73
191 192 6.597832 ACTTCCACTATAGCTAGCCTTATG 57.402 41.667 12.13 3.88 0.00 1.90
192 193 5.046950 ACTTCCACTATAGCTAGCCTTATGC 60.047 44.000 12.13 0.00 41.71 3.14
193 194 4.416516 TCCACTATAGCTAGCCTTATGCA 58.583 43.478 12.13 0.00 44.83 3.96
194 195 4.464244 TCCACTATAGCTAGCCTTATGCAG 59.536 45.833 12.13 2.04 44.83 4.41
196 197 3.772025 ACTATAGCTAGCCTTATGCAGGG 59.228 47.826 12.13 0.00 44.16 4.45
197 198 0.687354 TAGCTAGCCTTATGCAGGGC 59.313 55.000 12.13 17.08 44.16 5.19
201 202 2.113986 GCCTTATGCAGGGCGGAT 59.886 61.111 11.43 0.00 44.16 4.18
202 203 1.374947 GCCTTATGCAGGGCGGATA 59.625 57.895 11.43 0.00 44.16 2.59
203 204 0.035056 GCCTTATGCAGGGCGGATAT 60.035 55.000 11.43 0.00 44.16 1.63
204 205 1.614317 GCCTTATGCAGGGCGGATATT 60.614 52.381 11.43 0.00 44.16 1.28
205 206 2.795329 CCTTATGCAGGGCGGATATTT 58.205 47.619 0.00 0.00 39.39 1.40
206 207 3.872240 GCCTTATGCAGGGCGGATATTTA 60.872 47.826 11.43 0.00 44.16 1.40
214 215 6.919721 TGCAGGGCGGATATTTAATATTTTC 58.080 36.000 0.00 0.00 0.00 2.29
215 216 6.719370 TGCAGGGCGGATATTTAATATTTTCT 59.281 34.615 0.00 0.00 0.00 2.52
217 218 8.088365 GCAGGGCGGATATTTAATATTTTCTTT 58.912 33.333 0.00 0.00 0.00 2.52
218 219 9.626045 CAGGGCGGATATTTAATATTTTCTTTC 57.374 33.333 0.00 0.00 0.00 2.62
220 221 9.841880 GGGCGGATATTTAATATTTTCTTTCTC 57.158 33.333 0.00 0.00 0.00 2.87
236 237 7.726033 TTCTTTCTCTAGCTACTTCCTTCAT 57.274 36.000 0.00 0.00 0.00 2.57
240 241 3.223435 TCTAGCTACTTCCTTCATCCCG 58.777 50.000 0.00 0.00 0.00 5.14
273 274 4.575236 ACGCTCGAACAGATGTATCTAGAA 59.425 41.667 0.00 0.00 34.85 2.10
282 283 7.461182 ACAGATGTATCTAGAAGGTAGCATC 57.539 40.000 0.00 5.22 34.85 3.91
294 295 1.807742 GGTAGCATCGCTATCGTCTCT 59.192 52.381 0.00 0.00 43.30 3.10
304 305 3.803231 CGCTATCGTCTCTATACGGCTAT 59.197 47.826 0.00 0.00 43.05 2.97
305 306 4.270566 CGCTATCGTCTCTATACGGCTATT 59.729 45.833 0.00 0.00 43.05 1.73
306 307 5.556758 CGCTATCGTCTCTATACGGCTATTC 60.557 48.000 0.00 0.00 43.05 1.75
307 308 5.524646 GCTATCGTCTCTATACGGCTATTCT 59.475 44.000 0.00 0.00 43.05 2.40
308 309 5.804692 ATCGTCTCTATACGGCTATTCTG 57.195 43.478 0.00 0.00 43.05 3.02
309 310 4.639334 TCGTCTCTATACGGCTATTCTGT 58.361 43.478 0.00 0.00 43.05 3.41
310 311 5.787380 TCGTCTCTATACGGCTATTCTGTA 58.213 41.667 0.00 0.00 43.05 2.74
312 313 5.638657 CGTCTCTATACGGCTATTCTGTAGT 59.361 44.000 0.00 0.00 39.71 2.73
313 314 6.183360 CGTCTCTATACGGCTATTCTGTAGTC 60.183 46.154 0.00 0.00 39.71 2.59
315 316 8.034215 GTCTCTATACGGCTATTCTGTAGTCTA 58.966 40.741 0.00 0.00 39.71 2.59
316 317 8.252417 TCTCTATACGGCTATTCTGTAGTCTAG 58.748 40.741 0.00 0.00 39.71 2.43
318 319 8.034215 TCTATACGGCTATTCTGTAGTCTAGAC 58.966 40.741 15.41 15.41 39.71 2.59
319 320 3.808726 ACGGCTATTCTGTAGTCTAGACG 59.191 47.826 17.07 13.32 45.84 4.18
320 321 3.186817 CGGCTATTCTGTAGTCTAGACGG 59.813 52.174 17.07 9.08 38.70 4.79
321 322 4.136051 GGCTATTCTGTAGTCTAGACGGT 58.864 47.826 17.07 3.55 36.20 4.83
322 323 5.303971 GGCTATTCTGTAGTCTAGACGGTA 58.696 45.833 17.07 2.52 36.20 4.02
323 324 5.409214 GGCTATTCTGTAGTCTAGACGGTAG 59.591 48.000 17.07 15.07 36.20 3.18
324 325 5.106987 GCTATTCTGTAGTCTAGACGGTAGC 60.107 48.000 17.07 17.00 36.20 3.58
325 326 3.900966 TCTGTAGTCTAGACGGTAGCA 57.099 47.619 17.07 11.24 36.20 3.49
326 327 4.418973 TCTGTAGTCTAGACGGTAGCAT 57.581 45.455 17.07 0.56 36.20 3.79
327 328 4.127907 TCTGTAGTCTAGACGGTAGCATG 58.872 47.826 17.07 4.30 36.20 4.06
328 329 2.617308 TGTAGTCTAGACGGTAGCATGC 59.383 50.000 17.07 10.51 36.20 4.06
329 330 2.060050 AGTCTAGACGGTAGCATGCT 57.940 50.000 25.99 25.99 36.20 3.79
330 331 3.210232 AGTCTAGACGGTAGCATGCTA 57.790 47.619 23.52 23.52 36.20 3.49
331 332 3.757270 AGTCTAGACGGTAGCATGCTAT 58.243 45.455 29.17 14.69 36.20 2.97
332 333 4.145807 AGTCTAGACGGTAGCATGCTATT 58.854 43.478 29.17 16.96 36.20 1.73
333 334 4.216687 AGTCTAGACGGTAGCATGCTATTC 59.783 45.833 29.17 23.22 36.20 1.75
334 335 2.821991 AGACGGTAGCATGCTATTCC 57.178 50.000 29.17 23.90 0.00 3.01
335 336 1.000163 AGACGGTAGCATGCTATTCCG 60.000 52.381 36.47 36.47 41.21 4.30
336 337 1.000607 GACGGTAGCATGCTATTCCGA 60.001 52.381 41.02 19.71 39.21 4.55
337 338 1.411246 ACGGTAGCATGCTATTCCGAA 59.589 47.619 41.02 19.06 39.21 4.30
338 339 2.061773 CGGTAGCATGCTATTCCGAAG 58.938 52.381 35.83 17.50 39.21 3.79
339 340 2.545952 CGGTAGCATGCTATTCCGAAGT 60.546 50.000 35.83 11.55 39.21 3.01
342 343 1.202698 AGCATGCTATTCCGAAGTCCC 60.203 52.381 21.21 0.00 0.00 4.46
361 362 5.067805 AGTCCCTTTCTGAAAACACACATTC 59.932 40.000 4.18 0.00 0.00 2.67
362 363 5.067805 GTCCCTTTCTGAAAACACACATTCT 59.932 40.000 4.18 0.00 0.00 2.40
363 364 5.299279 TCCCTTTCTGAAAACACACATTCTC 59.701 40.000 4.18 0.00 0.00 2.87
364 365 5.300286 CCCTTTCTGAAAACACACATTCTCT 59.700 40.000 4.18 0.00 0.00 3.10
365 366 6.204359 CCTTTCTGAAAACACACATTCTCTG 58.796 40.000 4.18 0.00 0.00 3.35
497 513 2.908817 GTTTCGGGAAACGCTCTGA 58.091 52.632 8.38 0.00 40.85 3.27
498 514 0.790814 GTTTCGGGAAACGCTCTGAG 59.209 55.000 8.38 0.00 40.85 3.35
499 515 0.677288 TTTCGGGAAACGCTCTGAGA 59.323 50.000 9.28 0.00 43.86 3.27
500 516 0.677288 TTCGGGAAACGCTCTGAGAA 59.323 50.000 9.28 0.00 43.86 2.87
501 517 0.677288 TCGGGAAACGCTCTGAGAAA 59.323 50.000 9.28 0.00 43.86 2.52
502 518 1.069513 TCGGGAAACGCTCTGAGAAAA 59.930 47.619 9.28 0.00 43.86 2.29
503 519 1.871039 CGGGAAACGCTCTGAGAAAAA 59.129 47.619 9.28 0.00 34.82 1.94
556 572 3.353836 CACTCCGTTGCCGTTGGG 61.354 66.667 0.00 0.00 0.00 4.12
637 654 1.675801 CACAGGAAGCAGAGCAGGA 59.324 57.895 0.00 0.00 0.00 3.86
639 656 1.221293 CAGGAAGCAGAGCAGGAGG 59.779 63.158 0.00 0.00 0.00 4.30
640 657 2.124778 GGAAGCAGAGCAGGAGGC 60.125 66.667 0.00 0.00 45.30 4.70
818 852 1.361271 GTCTCCGTCGACACCACAA 59.639 57.895 17.16 0.00 34.11 3.33
819 853 0.938168 GTCTCCGTCGACACCACAAC 60.938 60.000 17.16 1.87 34.11 3.32
820 854 1.663702 CTCCGTCGACACCACAACC 60.664 63.158 17.16 0.00 0.00 3.77
857 891 4.291777 ACACCAACTCCTACTACTCCTACT 59.708 45.833 0.00 0.00 0.00 2.57
952 987 2.829384 GCTGACCTCACCCCCACAA 61.829 63.158 0.00 0.00 0.00 3.33
980 1015 0.536460 CCCGCTATAAATTGCCCCGT 60.536 55.000 0.00 0.00 0.00 5.28
993 1028 4.514577 CCCGTCCGCGAGCTCATT 62.515 66.667 15.40 0.00 41.33 2.57
1314 1361 1.005394 CACCTACCGCAACCTCGTT 60.005 57.895 0.00 0.00 0.00 3.85
1407 1466 1.187087 CTACCTTGCTTCTCCGTCCT 58.813 55.000 0.00 0.00 0.00 3.85
1408 1467 1.550976 CTACCTTGCTTCTCCGTCCTT 59.449 52.381 0.00 0.00 0.00 3.36
1410 1469 0.610687 CCTTGCTTCTCCGTCCTTCT 59.389 55.000 0.00 0.00 0.00 2.85
1411 1470 1.404851 CCTTGCTTCTCCGTCCTTCTC 60.405 57.143 0.00 0.00 0.00 2.87
1418 1477 3.664551 TCTCCGTCCTTCTCCATCTAA 57.335 47.619 0.00 0.00 0.00 2.10
1505 1619 1.051556 AGCCTAGCCTAGCTTCCACC 61.052 60.000 0.00 0.00 40.44 4.61
1612 1744 6.694877 TCAATGTTATCTGCTCGTACTAGT 57.305 37.500 0.00 0.00 0.00 2.57
1613 1745 7.797038 TCAATGTTATCTGCTCGTACTAGTA 57.203 36.000 0.00 0.00 0.00 1.82
1614 1746 7.637229 TCAATGTTATCTGCTCGTACTAGTAC 58.363 38.462 21.06 21.06 0.00 2.73
1694 1827 1.078848 GAGACACCAGGAGCGCAAT 60.079 57.895 11.47 0.00 0.00 3.56
1730 1867 1.188863 GATGCATGCCCAGGTCTTTT 58.811 50.000 16.68 0.00 0.00 2.27
1756 1911 0.038526 TCACGTCGGCTTTTCTCTCC 60.039 55.000 0.00 0.00 0.00 3.71
1758 1913 1.186267 ACGTCGGCTTTTCTCTCCCT 61.186 55.000 0.00 0.00 0.00 4.20
1759 1914 0.458716 CGTCGGCTTTTCTCTCCCTC 60.459 60.000 0.00 0.00 0.00 4.30
1760 1915 0.458716 GTCGGCTTTTCTCTCCCTCG 60.459 60.000 0.00 0.00 0.00 4.63
1761 1916 0.611062 TCGGCTTTTCTCTCCCTCGA 60.611 55.000 0.00 0.00 0.00 4.04
1762 1917 0.179124 CGGCTTTTCTCTCCCTCGAG 60.179 60.000 5.13 5.13 37.48 4.04
1763 1918 0.176910 GGCTTTTCTCTCCCTCGAGG 59.823 60.000 25.36 25.36 36.70 4.63
1764 1919 0.461163 GCTTTTCTCTCCCTCGAGGC 60.461 60.000 26.87 6.59 36.70 4.70
1765 1920 0.176910 CTTTTCTCTCCCTCGAGGCC 59.823 60.000 26.87 0.00 36.70 5.19
1766 1921 0.252284 TTTTCTCTCCCTCGAGGCCT 60.252 55.000 26.87 3.86 36.70 5.19
1767 1922 0.684805 TTTCTCTCCCTCGAGGCCTC 60.685 60.000 26.87 23.79 36.70 4.70
1830 1989 5.419155 CAGGACGCCTCTGGATTAATCTATA 59.581 44.000 14.95 1.29 0.00 1.31
1848 2007 0.604243 TACCCAACCGACACATGCAC 60.604 55.000 0.00 0.00 0.00 4.57
1849 2008 2.555782 CCAACCGACACATGCACG 59.444 61.111 0.00 0.00 0.00 5.34
1881 2040 1.069049 ACAACCTTTGCTTCCATGTGC 59.931 47.619 0.00 0.00 0.00 4.57
1886 2045 1.338973 CTTTGCTTCCATGTGCTGTGT 59.661 47.619 0.00 0.00 0.00 3.72
1892 2051 2.857186 TCCATGTGCTGTGTGTGTAT 57.143 45.000 0.00 0.00 0.00 2.29
1893 2052 3.971245 TCCATGTGCTGTGTGTGTATA 57.029 42.857 0.00 0.00 0.00 1.47
1894 2053 4.278975 TCCATGTGCTGTGTGTGTATAA 57.721 40.909 0.00 0.00 0.00 0.98
1895 2054 4.000325 TCCATGTGCTGTGTGTGTATAAC 59.000 43.478 0.00 0.00 0.00 1.89
1897 2056 2.409012 TGTGCTGTGTGTGTATAACCG 58.591 47.619 0.00 0.00 0.00 4.44
1899 2058 1.270358 TGCTGTGTGTGTATAACCGCA 60.270 47.619 0.00 0.00 0.00 5.69
1900 2059 1.127951 GCTGTGTGTGTATAACCGCAC 59.872 52.381 8.80 8.80 44.23 5.34
1901 2060 2.683968 CTGTGTGTGTATAACCGCACT 58.316 47.619 14.26 0.00 44.28 4.40
1904 2063 3.506844 TGTGTGTGTATAACCGCACTAGA 59.493 43.478 14.26 0.00 44.28 2.43
1913 2076 6.588756 TGTATAACCGCACTAGAGTTCTTTTG 59.411 38.462 0.00 0.00 0.00 2.44
1983 2151 1.330521 TGAGCTGTGCTTTCGTTTCAC 59.669 47.619 0.00 0.00 39.88 3.18
1987 2155 0.660488 TGTGCTTTCGTTTCACGCAT 59.340 45.000 0.00 0.00 42.21 4.73
1996 2164 5.351233 TTCGTTTCACGCATGATAAACTT 57.649 34.783 0.00 0.00 42.21 2.66
2035 2207 2.953466 TGGCGTCTTGTATGGAGTAC 57.047 50.000 0.00 0.00 0.00 2.73
2040 2215 3.315749 GCGTCTTGTATGGAGTACTAGCT 59.684 47.826 0.00 0.00 36.49 3.32
2123 2303 3.387374 ACTCCGCATCTTCATCAAGATCT 59.613 43.478 0.00 0.00 44.86 2.75
2156 2336 1.062685 CTCGAGTACGTGCGATGCT 59.937 57.895 3.62 0.00 40.69 3.79
2158 2338 0.109458 TCGAGTACGTGCGATGCTTT 60.109 50.000 0.00 0.00 40.69 3.51
2159 2339 0.713883 CGAGTACGTGCGATGCTTTT 59.286 50.000 0.00 0.00 34.56 2.27
2191 2400 5.997385 ACTGTTTTTATTTACCAGCTGTCG 58.003 37.500 13.81 0.00 0.00 4.35
2195 2404 2.572191 TATTTACCAGCTGTCGGTCG 57.428 50.000 13.81 0.00 37.99 4.79
2196 2405 0.108329 ATTTACCAGCTGTCGGTCGG 60.108 55.000 13.81 0.00 37.99 4.79
2198 2407 1.870055 TTACCAGCTGTCGGTCGGTC 61.870 60.000 13.81 0.00 37.99 4.79
2199 2408 3.680786 CCAGCTGTCGGTCGGTCA 61.681 66.667 13.81 0.00 0.00 4.02
2200 2409 2.338620 CAGCTGTCGGTCGGTCAA 59.661 61.111 5.25 0.00 0.00 3.18
2201 2410 1.079819 CAGCTGTCGGTCGGTCAAT 60.080 57.895 5.25 0.00 0.00 2.57
2202 2411 1.079819 AGCTGTCGGTCGGTCAATG 60.080 57.895 0.00 0.00 0.00 2.82
2203 2412 1.080093 GCTGTCGGTCGGTCAATGA 60.080 57.895 0.00 0.00 0.00 2.57
2204 2413 0.669318 GCTGTCGGTCGGTCAATGAA 60.669 55.000 0.00 0.00 0.00 2.57
2206 2415 2.346803 CTGTCGGTCGGTCAATGAATT 58.653 47.619 0.00 0.00 0.00 2.17
2207 2416 3.517602 CTGTCGGTCGGTCAATGAATTA 58.482 45.455 0.00 0.00 0.00 1.40
2209 2418 3.868661 TGTCGGTCGGTCAATGAATTATG 59.131 43.478 0.00 0.00 0.00 1.90
2211 2420 3.118555 TCGGTCGGTCAATGAATTATGGT 60.119 43.478 0.00 0.00 0.00 3.55
2212 2421 3.002246 CGGTCGGTCAATGAATTATGGTG 59.998 47.826 0.00 0.00 0.00 4.17
2213 2422 3.945285 GGTCGGTCAATGAATTATGGTGT 59.055 43.478 0.00 0.00 0.00 4.16
2216 2425 5.815740 GTCGGTCAATGAATTATGGTGTACT 59.184 40.000 0.00 0.00 0.00 2.73
2217 2426 5.815222 TCGGTCAATGAATTATGGTGTACTG 59.185 40.000 0.00 0.00 0.00 2.74
2218 2427 5.815222 CGGTCAATGAATTATGGTGTACTGA 59.185 40.000 0.00 0.00 0.00 3.41
2219 2428 6.483307 CGGTCAATGAATTATGGTGTACTGAT 59.517 38.462 0.00 0.00 0.00 2.90
2221 2430 9.337396 GGTCAATGAATTATGGTGTACTGATTA 57.663 33.333 0.00 0.00 0.00 1.75
2230 2439 9.692749 ATTATGGTGTACTGATTATTACTCGTG 57.307 33.333 0.00 0.00 0.00 4.35
2231 2440 5.898174 TGGTGTACTGATTATTACTCGTGG 58.102 41.667 0.00 0.00 0.00 4.94
2667 2880 1.205179 CCATTAATGGCAGCAGCAACA 59.795 47.619 21.32 0.00 44.61 3.33
2668 2881 2.536365 CATTAATGGCAGCAGCAACAG 58.464 47.619 7.62 0.00 44.61 3.16
2669 2882 0.244450 TTAATGGCAGCAGCAACAGC 59.756 50.000 2.65 0.00 44.61 4.40
2670 2883 0.609957 TAATGGCAGCAGCAACAGCT 60.610 50.000 2.65 0.00 44.61 4.24
2671 2884 0.609957 AATGGCAGCAGCAACAGCTA 60.610 50.000 2.65 0.00 44.61 3.32
2672 2885 1.030488 ATGGCAGCAGCAACAGCTAG 61.030 55.000 2.65 0.00 44.61 3.42
2673 2886 1.673665 GGCAGCAGCAACAGCTAGT 60.674 57.895 2.65 0.00 44.61 2.57
2674 2887 0.391661 GGCAGCAGCAACAGCTAGTA 60.392 55.000 2.65 0.00 44.61 1.82
2675 2888 0.723981 GCAGCAGCAACAGCTAGTAC 59.276 55.000 0.00 0.00 41.14 2.73
2677 2890 1.998315 CAGCAGCAACAGCTAGTACTG 59.002 52.381 5.39 11.52 41.14 2.74
2854 3086 3.499737 GCGTGGGTCATCGGCTTG 61.500 66.667 0.00 0.00 0.00 4.01
2900 3132 3.717294 CGGTAAGCAGTGCCCCCT 61.717 66.667 12.58 0.00 0.00 4.79
2917 3157 1.676746 CCTAGTCAAGCTGCATGCAT 58.323 50.000 22.97 3.95 45.94 3.96
2918 3158 1.333931 CCTAGTCAAGCTGCATGCATG 59.666 52.381 22.97 22.70 45.94 4.06
2947 3187 2.438434 GGCCAGTCGACCCCATTG 60.438 66.667 13.01 3.11 0.00 2.82
2969 3214 9.214957 CATTGGTTATTAACGAGCTAATGGATA 57.785 33.333 0.00 0.00 0.00 2.59
2983 3228 4.829064 AATGGATAAATTATGCGCGTGT 57.171 36.364 13.61 0.00 0.00 4.49
3155 3400 4.012374 ACTCTCGGAAGGTGATTACGTTA 58.988 43.478 0.00 0.00 45.96 3.18
3156 3401 4.096081 ACTCTCGGAAGGTGATTACGTTAG 59.904 45.833 0.00 0.00 45.96 2.34
3157 3402 3.114065 CTCGGAAGGTGATTACGTTAGC 58.886 50.000 0.00 0.00 45.96 3.09
3193 3443 8.920174 TCTCTTGATATTAATTAAGACCCGTCA 58.080 33.333 3.94 0.00 33.94 4.35
3199 3449 9.268268 GATATTAATTAAGACCCGTCACAATCA 57.732 33.333 3.94 0.00 0.00 2.57
3211 3464 3.679502 CGTCACAATCACTGCAGTAATCA 59.320 43.478 21.20 4.14 0.00 2.57
3223 3479 7.764443 TCACTGCAGTAATCAGTTAACTAATCC 59.236 37.037 21.20 0.00 42.38 3.01
3394 3656 2.667199 ACTAACGGCACCAACGGC 60.667 61.111 0.00 0.00 35.23 5.68
3515 3777 4.058732 ATCCGTGGTGCGTGCGTA 62.059 61.111 0.00 0.00 39.32 4.42
3516 3778 3.365291 ATCCGTGGTGCGTGCGTAT 62.365 57.895 0.00 0.00 39.32 3.06
3550 3815 2.925352 GCACGTGCGTTTCTTCGA 59.075 55.556 26.77 0.00 0.00 3.71
3567 3832 4.338400 TCTTCGATCTCGTGTATGGTCAAT 59.662 41.667 0.00 0.00 40.80 2.57
3568 3833 4.224715 TCGATCTCGTGTATGGTCAATC 57.775 45.455 0.00 0.00 40.80 2.67
3687 3955 9.071276 ACCACATAAATTTATGAGCTCCTTATG 57.929 33.333 34.28 21.62 42.38 1.90
3838 4115 0.248296 GAGCACCGATCACTCGTCTC 60.248 60.000 0.00 0.00 43.49 3.36
3840 4117 0.171455 GCACCGATCACTCGTCTCTT 59.829 55.000 0.00 0.00 43.49 2.85
3841 4118 1.402984 GCACCGATCACTCGTCTCTTT 60.403 52.381 0.00 0.00 43.49 2.52
3842 4119 2.159421 GCACCGATCACTCGTCTCTTTA 60.159 50.000 0.00 0.00 43.49 1.85
3843 4120 3.672511 GCACCGATCACTCGTCTCTTTAA 60.673 47.826 0.00 0.00 43.49 1.52
3876 4153 5.725325 ACTCCTAACACTAACTCCAGTTC 57.275 43.478 0.00 0.00 39.31 3.01
3889 4166 3.633986 ACTCCAGTTCAGAAAAGCAAAGG 59.366 43.478 0.00 0.00 0.00 3.11
3919 4200 6.128035 TGTCCTGTGTGTGCAATAATCAATAC 60.128 38.462 0.00 0.00 0.00 1.89
3931 4222 8.397906 TGCAATAATCAATACTACTCTTGTTGC 58.602 33.333 7.36 7.36 34.15 4.17
3959 4254 6.872670 GCAACTAGCTTAACACTACTACTG 57.127 41.667 0.00 0.00 41.15 2.74
4008 4303 2.170607 CGTGTTCCCTGGTATGGAATCT 59.829 50.000 0.00 0.00 43.44 2.40
4027 4322 4.216411 TCTAACAGTATCCCAAAGGTGC 57.784 45.455 0.00 0.00 0.00 5.01
4063 4358 2.733593 ACGTCGCCGTCTGCTTTC 60.734 61.111 0.00 0.00 46.28 2.62
4065 4360 2.357034 GTCGCCGTCTGCTTTCCA 60.357 61.111 0.00 0.00 38.05 3.53
4116 4415 3.000815 TCCGGCAGGAATAATTCGC 57.999 52.632 1.89 0.00 45.12 4.70
4168 4467 0.674895 GAGCATCGGTCCAGCTTTGT 60.675 55.000 2.37 0.00 39.02 2.83
4214 4513 4.554162 CGATCGATCGCCTTATCTTTTC 57.446 45.455 32.34 0.00 43.84 2.29
4215 4514 4.230657 CGATCGATCGCCTTATCTTTTCT 58.769 43.478 32.34 0.00 43.84 2.52
4216 4515 5.391449 CGATCGATCGCCTTATCTTTTCTA 58.609 41.667 32.34 0.00 43.84 2.10
4217 4516 6.030849 CGATCGATCGCCTTATCTTTTCTAT 58.969 40.000 32.34 0.00 43.84 1.98
4219 4518 7.696872 CGATCGATCGCCTTATCTTTTCTATTA 59.303 37.037 32.34 0.00 43.84 0.98
4220 4519 8.918961 ATCGATCGCCTTATCTTTTCTATTAG 57.081 34.615 11.09 0.00 0.00 1.73
4221 4520 8.107399 TCGATCGCCTTATCTTTTCTATTAGA 57.893 34.615 11.09 0.00 0.00 2.10
4222 4521 8.740906 TCGATCGCCTTATCTTTTCTATTAGAT 58.259 33.333 11.09 0.00 35.41 1.98
4223 4522 9.360093 CGATCGCCTTATCTTTTCTATTAGATT 57.640 33.333 0.26 0.00 33.38 2.40
4248 4547 1.754621 TGCCCGTGCAGGACAAAAA 60.755 52.632 8.24 0.00 44.23 1.94
4249 4548 1.299850 GCCCGTGCAGGACAAAAAC 60.300 57.895 8.24 0.00 45.00 2.43
4250 4549 1.734388 GCCCGTGCAGGACAAAAACT 61.734 55.000 8.24 0.00 45.00 2.66
4252 4551 0.310854 CCGTGCAGGACAAAAACTCC 59.689 55.000 8.24 0.00 45.00 3.85
4267 4570 1.682740 ACTCCTAAGCTAGTCGCCTC 58.317 55.000 0.00 0.00 40.39 4.70
4278 4599 2.438614 TCGCCTCTAGTGCTCGCT 60.439 61.111 5.67 0.00 0.00 4.93
4286 4607 1.472878 TCTAGTGCTCGCTAGTTGTGG 59.527 52.381 14.83 0.00 39.44 4.17
4304 4625 1.766496 TGGTTTCTAAGCCGGGGATAG 59.234 52.381 2.18 0.00 31.02 2.08
4305 4626 1.542767 GGTTTCTAAGCCGGGGATAGC 60.543 57.143 2.18 0.00 0.00 2.97
4306 4627 0.763035 TTTCTAAGCCGGGGATAGCC 59.237 55.000 2.18 0.00 0.00 3.93
4307 4628 0.105142 TTCTAAGCCGGGGATAGCCT 60.105 55.000 2.18 0.00 0.00 4.58
4308 4629 0.781920 TCTAAGCCGGGGATAGCCTA 59.218 55.000 2.18 0.00 0.00 3.93
4309 4630 1.187087 CTAAGCCGGGGATAGCCTAG 58.813 60.000 2.18 0.00 0.00 3.02
4310 4631 0.903454 TAAGCCGGGGATAGCCTAGC 60.903 60.000 2.18 0.00 0.00 3.42
4311 4632 2.604991 GCCGGGGATAGCCTAGCT 60.605 66.667 2.18 0.00 43.41 3.32
4313 4634 1.324005 GCCGGGGATAGCCTAGCTAG 61.324 65.000 14.20 14.20 44.66 3.42
4314 4635 0.331954 CCGGGGATAGCCTAGCTAGA 59.668 60.000 22.70 2.39 44.66 2.43
4328 4649 3.396260 AGCTAGAAAAAGCACGTACCA 57.604 42.857 0.00 0.00 45.30 3.25
4340 4661 0.603569 ACGTACCAGTGGCAGAAGAG 59.396 55.000 9.78 0.00 0.00 2.85
4345 4666 1.079543 CAGTGGCAGAAGAGGACGG 60.080 63.158 0.00 0.00 0.00 4.79
4368 4696 4.764172 AGATCATCACTACTCTTGTTGGC 58.236 43.478 0.00 0.00 0.00 4.52
4372 4700 2.325484 TCACTACTCTTGTTGGCTGGA 58.675 47.619 0.00 0.00 0.00 3.86
4425 4754 2.424601 CGGGAAAGAGATACGGTGTGTA 59.575 50.000 0.00 0.00 37.49 2.90
4427 4756 3.698040 GGGAAAGAGATACGGTGTGTAGA 59.302 47.826 0.00 0.00 36.25 2.59
4428 4757 4.439837 GGGAAAGAGATACGGTGTGTAGAC 60.440 50.000 0.00 0.00 36.25 2.59
4429 4758 4.341099 GAAAGAGATACGGTGTGTAGACG 58.659 47.826 0.00 0.00 36.25 4.18
4430 4759 2.983229 AGAGATACGGTGTGTAGACGT 58.017 47.619 0.00 0.00 43.88 4.34
4456 4801 3.060003 CCTTTTCTGATCGATCGTGATGC 60.060 47.826 20.03 2.07 0.00 3.91
4461 4806 1.328439 GATCGATCGTGATGCGGTAC 58.672 55.000 15.94 0.00 41.72 3.34
4485 4830 2.745884 TTGCCGATCTGCAACGGG 60.746 61.111 19.18 8.20 45.77 5.28
4487 4832 3.247056 TGCCGATCTGCAACGGGAA 62.247 57.895 21.89 0.00 45.82 3.97
4488 4833 3.486263 CCGATCTGCAACGGGAAC 58.514 61.111 15.73 0.00 44.59 3.62
4537 4991 0.672889 AAAATGCATGCACACGGTGA 59.327 45.000 25.37 0.00 35.23 4.02
4542 4996 1.600636 CATGCACACGGTGAGGGTT 60.601 57.895 16.29 0.00 35.23 4.11
4571 5026 3.245315 GAATCACGTCGCCGTCGG 61.245 66.667 6.99 6.99 46.28 4.79
4594 5049 0.593773 GTCGTTTTTGGCATGCACGT 60.594 50.000 21.36 0.00 32.65 4.49
4620 5075 4.005032 TTTGCGCGACAAAAAGCC 57.995 50.000 20.86 0.00 45.22 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.154462 GGCTTGCATGACACTACACTT 58.846 47.619 3.33 0.00 0.00 3.16
1 2 1.349026 AGGCTTGCATGACACTACACT 59.651 47.619 8.34 0.00 0.00 3.55
2 3 1.813513 AGGCTTGCATGACACTACAC 58.186 50.000 8.34 0.00 0.00 2.90
3 4 2.224499 TGAAGGCTTGCATGACACTACA 60.224 45.455 3.46 0.00 0.00 2.74
4 5 2.426522 TGAAGGCTTGCATGACACTAC 58.573 47.619 3.46 0.00 0.00 2.73
5 6 2.857186 TGAAGGCTTGCATGACACTA 57.143 45.000 3.46 0.00 0.00 2.74
6 7 2.211250 ATGAAGGCTTGCATGACACT 57.789 45.000 3.46 0.00 0.00 3.55
7 8 3.308438 AAATGAAGGCTTGCATGACAC 57.692 42.857 3.46 2.23 0.00 3.67
8 9 5.664294 AATAAATGAAGGCTTGCATGACA 57.336 34.783 3.46 0.00 0.00 3.58
9 10 7.205297 ACATAATAAATGAAGGCTTGCATGAC 58.795 34.615 3.46 0.00 0.00 3.06
10 11 7.350744 ACATAATAAATGAAGGCTTGCATGA 57.649 32.000 3.46 1.38 0.00 3.07
11 12 7.493320 ACAACATAATAAATGAAGGCTTGCATG 59.507 33.333 3.46 0.00 0.00 4.06
12 13 7.558604 ACAACATAATAAATGAAGGCTTGCAT 58.441 30.769 3.46 5.41 0.00 3.96
13 14 6.934056 ACAACATAATAAATGAAGGCTTGCA 58.066 32.000 3.46 2.93 0.00 4.08
14 15 8.405531 TCTACAACATAATAAATGAAGGCTTGC 58.594 33.333 3.46 0.00 0.00 4.01
15 16 9.722056 GTCTACAACATAATAAATGAAGGCTTG 57.278 33.333 3.46 0.00 0.00 4.01
16 17 9.686683 AGTCTACAACATAATAAATGAAGGCTT 57.313 29.630 0.00 0.00 0.00 4.35
17 18 9.331282 GAGTCTACAACATAATAAATGAAGGCT 57.669 33.333 0.00 0.00 0.00 4.58
18 19 9.109393 TGAGTCTACAACATAATAAATGAAGGC 57.891 33.333 0.00 0.00 0.00 4.35
30 31 9.173021 CCCAATACAAAATGAGTCTACAACATA 57.827 33.333 0.00 0.00 0.00 2.29
31 32 7.122650 CCCCAATACAAAATGAGTCTACAACAT 59.877 37.037 0.00 0.00 0.00 2.71
32 33 6.432783 CCCCAATACAAAATGAGTCTACAACA 59.567 38.462 0.00 0.00 0.00 3.33
33 34 6.433093 ACCCCAATACAAAATGAGTCTACAAC 59.567 38.462 0.00 0.00 0.00 3.32
34 35 6.432783 CACCCCAATACAAAATGAGTCTACAA 59.567 38.462 0.00 0.00 0.00 2.41
35 36 5.943416 CACCCCAATACAAAATGAGTCTACA 59.057 40.000 0.00 0.00 0.00 2.74
36 37 5.163652 GCACCCCAATACAAAATGAGTCTAC 60.164 44.000 0.00 0.00 0.00 2.59
37 38 4.947388 GCACCCCAATACAAAATGAGTCTA 59.053 41.667 0.00 0.00 0.00 2.59
38 39 3.763897 GCACCCCAATACAAAATGAGTCT 59.236 43.478 0.00 0.00 0.00 3.24
39 40 3.427503 CGCACCCCAATACAAAATGAGTC 60.428 47.826 0.00 0.00 0.00 3.36
40 41 2.491693 CGCACCCCAATACAAAATGAGT 59.508 45.455 0.00 0.00 0.00 3.41
41 42 2.491693 ACGCACCCCAATACAAAATGAG 59.508 45.455 0.00 0.00 0.00 2.90
42 43 2.520069 ACGCACCCCAATACAAAATGA 58.480 42.857 0.00 0.00 0.00 2.57
43 44 3.311486 AACGCACCCCAATACAAAATG 57.689 42.857 0.00 0.00 0.00 2.32
44 45 4.464597 ACATAACGCACCCCAATACAAAAT 59.535 37.500 0.00 0.00 0.00 1.82
45 46 3.827302 ACATAACGCACCCCAATACAAAA 59.173 39.130 0.00 0.00 0.00 2.44
46 47 3.422796 ACATAACGCACCCCAATACAAA 58.577 40.909 0.00 0.00 0.00 2.83
47 48 3.074675 ACATAACGCACCCCAATACAA 57.925 42.857 0.00 0.00 0.00 2.41
48 49 2.791347 ACATAACGCACCCCAATACA 57.209 45.000 0.00 0.00 0.00 2.29
49 50 4.023536 CCATAACATAACGCACCCCAATAC 60.024 45.833 0.00 0.00 0.00 1.89
50 51 4.138290 CCATAACATAACGCACCCCAATA 58.862 43.478 0.00 0.00 0.00 1.90
51 52 2.955660 CCATAACATAACGCACCCCAAT 59.044 45.455 0.00 0.00 0.00 3.16
52 53 2.291024 ACCATAACATAACGCACCCCAA 60.291 45.455 0.00 0.00 0.00 4.12
53 54 1.282447 ACCATAACATAACGCACCCCA 59.718 47.619 0.00 0.00 0.00 4.96
54 55 2.047002 ACCATAACATAACGCACCCC 57.953 50.000 0.00 0.00 0.00 4.95
55 56 3.940221 TGTTACCATAACATAACGCACCC 59.060 43.478 0.00 0.00 34.60 4.61
56 57 5.744666 ATGTTACCATAACATAACGCACC 57.255 39.130 11.57 0.00 38.94 5.01
84 85 2.613223 GGAGAGAGGTGCTTGTGGTAAC 60.613 54.545 0.00 0.00 0.00 2.50
85 86 1.623811 GGAGAGAGGTGCTTGTGGTAA 59.376 52.381 0.00 0.00 0.00 2.85
86 87 1.203187 AGGAGAGAGGTGCTTGTGGTA 60.203 52.381 0.00 0.00 0.00 3.25
87 88 0.472734 AGGAGAGAGGTGCTTGTGGT 60.473 55.000 0.00 0.00 0.00 4.16
88 89 0.248843 GAGGAGAGAGGTGCTTGTGG 59.751 60.000 0.00 0.00 0.00 4.17
89 90 0.972134 TGAGGAGAGAGGTGCTTGTG 59.028 55.000 0.00 0.00 0.00 3.33
90 91 1.949799 ATGAGGAGAGAGGTGCTTGT 58.050 50.000 0.00 0.00 0.00 3.16
91 92 4.081198 AGTTAATGAGGAGAGAGGTGCTTG 60.081 45.833 0.00 0.00 0.00 4.01
92 93 4.100373 AGTTAATGAGGAGAGAGGTGCTT 58.900 43.478 0.00 0.00 0.00 3.91
93 94 3.718723 AGTTAATGAGGAGAGAGGTGCT 58.281 45.455 0.00 0.00 0.00 4.40
94 95 4.081420 TGAAGTTAATGAGGAGAGAGGTGC 60.081 45.833 0.00 0.00 0.00 5.01
95 96 5.667539 TGAAGTTAATGAGGAGAGAGGTG 57.332 43.478 0.00 0.00 0.00 4.00
96 97 5.396213 GCATGAAGTTAATGAGGAGAGAGGT 60.396 44.000 4.20 0.00 0.00 3.85
97 98 5.055812 GCATGAAGTTAATGAGGAGAGAGG 58.944 45.833 4.20 0.00 0.00 3.69
98 99 5.055812 GGCATGAAGTTAATGAGGAGAGAG 58.944 45.833 4.20 0.00 0.00 3.20
99 100 4.471025 TGGCATGAAGTTAATGAGGAGAGA 59.529 41.667 4.20 0.00 0.00 3.10
100 101 4.574013 GTGGCATGAAGTTAATGAGGAGAG 59.426 45.833 4.20 0.00 0.00 3.20
101 102 4.019411 TGTGGCATGAAGTTAATGAGGAGA 60.019 41.667 4.20 0.00 0.00 3.71
102 103 4.264253 TGTGGCATGAAGTTAATGAGGAG 58.736 43.478 4.20 0.00 0.00 3.69
103 104 4.299586 TGTGGCATGAAGTTAATGAGGA 57.700 40.909 4.20 0.00 0.00 3.71
104 105 6.698008 TTATGTGGCATGAAGTTAATGAGG 57.302 37.500 4.20 0.00 0.00 3.86
105 106 6.183360 TGCTTATGTGGCATGAAGTTAATGAG 60.183 38.462 4.20 0.00 34.56 2.90
106 107 5.651576 TGCTTATGTGGCATGAAGTTAATGA 59.348 36.000 4.20 0.00 34.56 2.57
107 108 5.893687 TGCTTATGTGGCATGAAGTTAATG 58.106 37.500 0.00 0.00 34.56 1.90
108 109 6.720112 ATGCTTATGTGGCATGAAGTTAAT 57.280 33.333 0.00 0.00 46.85 1.40
118 119 5.706833 CCAAGACATATATGCTTATGTGGCA 59.293 40.000 19.92 0.00 41.67 4.92
119 120 5.124457 CCCAAGACATATATGCTTATGTGGC 59.876 44.000 12.79 14.99 41.67 5.01
120 121 6.475504 TCCCAAGACATATATGCTTATGTGG 58.524 40.000 12.79 13.13 41.67 4.17
121 122 7.609146 ACATCCCAAGACATATATGCTTATGTG 59.391 37.037 20.97 12.86 41.67 3.21
122 123 7.609146 CACATCCCAAGACATATATGCTTATGT 59.391 37.037 12.79 16.77 43.70 2.29
123 124 7.414873 GCACATCCCAAGACATATATGCTTATG 60.415 40.741 12.79 16.28 35.98 1.90
124 125 6.600822 GCACATCCCAAGACATATATGCTTAT 59.399 38.462 12.79 5.54 0.00 1.73
125 126 5.939883 GCACATCCCAAGACATATATGCTTA 59.060 40.000 12.79 3.68 0.00 3.09
126 127 4.763793 GCACATCCCAAGACATATATGCTT 59.236 41.667 12.79 13.15 0.00 3.91
127 128 4.042560 AGCACATCCCAAGACATATATGCT 59.957 41.667 12.79 8.05 34.96 3.79
128 129 4.330250 AGCACATCCCAAGACATATATGC 58.670 43.478 12.79 5.91 0.00 3.14
129 130 7.108194 ACATAGCACATCCCAAGACATATATG 58.892 38.462 11.29 11.29 0.00 1.78
130 131 7.262990 ACATAGCACATCCCAAGACATATAT 57.737 36.000 0.00 0.00 0.00 0.86
131 132 6.686484 ACATAGCACATCCCAAGACATATA 57.314 37.500 0.00 0.00 0.00 0.86
132 133 5.573380 ACATAGCACATCCCAAGACATAT 57.427 39.130 0.00 0.00 0.00 1.78
133 134 5.372343 AACATAGCACATCCCAAGACATA 57.628 39.130 0.00 0.00 0.00 2.29
134 135 3.939740 ACATAGCACATCCCAAGACAT 57.060 42.857 0.00 0.00 0.00 3.06
135 136 3.719268 AACATAGCACATCCCAAGACA 57.281 42.857 0.00 0.00 0.00 3.41
136 137 4.770795 AGTAACATAGCACATCCCAAGAC 58.229 43.478 0.00 0.00 0.00 3.01
137 138 5.451381 CGTAGTAACATAGCACATCCCAAGA 60.451 44.000 0.00 0.00 0.00 3.02
138 139 4.745125 CGTAGTAACATAGCACATCCCAAG 59.255 45.833 0.00 0.00 0.00 3.61
139 140 4.160814 ACGTAGTAACATAGCACATCCCAA 59.839 41.667 0.00 0.00 41.94 4.12
140 141 3.702548 ACGTAGTAACATAGCACATCCCA 59.297 43.478 0.00 0.00 41.94 4.37
141 142 4.317671 ACGTAGTAACATAGCACATCCC 57.682 45.455 0.00 0.00 41.94 3.85
155 156 9.046296 GCTATAGTGGAAGTAACTTACGTAGTA 57.954 37.037 0.84 0.00 45.11 1.82
157 158 8.152309 AGCTATAGTGGAAGTAACTTACGTAG 57.848 38.462 0.84 0.00 0.00 3.51
158 159 9.265901 CTAGCTATAGTGGAAGTAACTTACGTA 57.734 37.037 0.84 0.00 0.00 3.57
159 160 7.255070 GCTAGCTATAGTGGAAGTAACTTACGT 60.255 40.741 7.70 0.00 0.00 3.57
160 161 7.076983 GCTAGCTATAGTGGAAGTAACTTACG 58.923 42.308 7.70 0.00 0.00 3.18
161 162 7.231115 AGGCTAGCTATAGTGGAAGTAACTTAC 59.769 40.741 15.72 0.00 0.00 2.34
162 163 7.296098 AGGCTAGCTATAGTGGAAGTAACTTA 58.704 38.462 15.72 0.00 0.00 2.24
163 164 6.137559 AGGCTAGCTATAGTGGAAGTAACTT 58.862 40.000 15.72 0.00 0.00 2.66
164 165 5.707495 AGGCTAGCTATAGTGGAAGTAACT 58.293 41.667 15.72 0.00 0.00 2.24
165 166 6.408107 AAGGCTAGCTATAGTGGAAGTAAC 57.592 41.667 15.72 0.00 0.00 2.50
166 167 7.309867 GCATAAGGCTAGCTATAGTGGAAGTAA 60.310 40.741 15.72 0.00 40.25 2.24
167 168 6.153000 GCATAAGGCTAGCTATAGTGGAAGTA 59.847 42.308 15.72 0.00 40.25 2.24
168 169 5.046950 GCATAAGGCTAGCTATAGTGGAAGT 60.047 44.000 15.72 0.00 40.25 3.01
169 170 5.047021 TGCATAAGGCTAGCTATAGTGGAAG 60.047 44.000 15.72 0.00 45.15 3.46
170 171 4.838423 TGCATAAGGCTAGCTATAGTGGAA 59.162 41.667 15.72 0.00 45.15 3.53
171 172 4.416516 TGCATAAGGCTAGCTATAGTGGA 58.583 43.478 15.72 6.26 45.15 4.02
172 173 4.382470 CCTGCATAAGGCTAGCTATAGTGG 60.382 50.000 15.72 4.45 45.15 4.00
173 174 4.382470 CCCTGCATAAGGCTAGCTATAGTG 60.382 50.000 15.72 8.72 45.89 2.74
174 175 3.772025 CCCTGCATAAGGCTAGCTATAGT 59.228 47.826 15.72 0.00 45.89 2.12
175 176 3.431486 GCCCTGCATAAGGCTAGCTATAG 60.431 52.174 15.72 0.00 45.89 1.31
176 177 2.501723 GCCCTGCATAAGGCTAGCTATA 59.498 50.000 15.72 8.51 45.89 1.31
177 178 1.280421 GCCCTGCATAAGGCTAGCTAT 59.720 52.381 15.72 6.36 45.89 2.97
178 179 0.687354 GCCCTGCATAAGGCTAGCTA 59.313 55.000 15.72 0.00 45.89 3.32
179 180 1.453669 GCCCTGCATAAGGCTAGCT 59.546 57.895 15.72 0.00 45.89 3.32
180 181 4.071459 GCCCTGCATAAGGCTAGC 57.929 61.111 6.04 6.04 45.89 3.42
184 185 0.035056 ATATCCGCCCTGCATAAGGC 60.035 55.000 11.53 11.53 45.89 4.35
185 186 2.496899 AATATCCGCCCTGCATAAGG 57.503 50.000 0.00 0.00 46.94 2.69
186 187 7.807977 ATATTAAATATCCGCCCTGCATAAG 57.192 36.000 0.00 0.00 0.00 1.73
187 188 8.588290 AAATATTAAATATCCGCCCTGCATAA 57.412 30.769 0.00 0.00 0.00 1.90
188 189 8.588290 AAAATATTAAATATCCGCCCTGCATA 57.412 30.769 0.00 0.00 0.00 3.14
189 190 7.397192 AGAAAATATTAAATATCCGCCCTGCAT 59.603 33.333 0.00 0.00 0.00 3.96
190 191 6.719370 AGAAAATATTAAATATCCGCCCTGCA 59.281 34.615 0.00 0.00 0.00 4.41
191 192 7.158099 AGAAAATATTAAATATCCGCCCTGC 57.842 36.000 0.00 0.00 0.00 4.85
192 193 9.626045 GAAAGAAAATATTAAATATCCGCCCTG 57.374 33.333 0.00 0.00 0.00 4.45
193 194 9.588096 AGAAAGAAAATATTAAATATCCGCCCT 57.412 29.630 0.00 0.00 0.00 5.19
194 195 9.841880 GAGAAAGAAAATATTAAATATCCGCCC 57.158 33.333 0.00 0.00 0.00 6.13
214 215 6.462347 GGGATGAAGGAAGTAGCTAGAGAAAG 60.462 46.154 0.00 0.00 0.00 2.62
215 216 5.364157 GGGATGAAGGAAGTAGCTAGAGAAA 59.636 44.000 0.00 0.00 0.00 2.52
217 218 4.475345 GGGATGAAGGAAGTAGCTAGAGA 58.525 47.826 0.00 0.00 0.00 3.10
218 219 3.254657 CGGGATGAAGGAAGTAGCTAGAG 59.745 52.174 0.00 0.00 0.00 2.43
220 221 2.959707 ACGGGATGAAGGAAGTAGCTAG 59.040 50.000 0.00 0.00 0.00 3.42
223 224 4.338379 AATACGGGATGAAGGAAGTAGC 57.662 45.455 0.00 0.00 0.00 3.58
225 226 7.929785 GTCAATTAATACGGGATGAAGGAAGTA 59.070 37.037 0.00 0.00 0.00 2.24
233 234 4.304110 GAGCGTCAATTAATACGGGATGA 58.696 43.478 11.62 0.00 39.46 2.92
236 237 2.358582 TCGAGCGTCAATTAATACGGGA 59.641 45.455 11.62 0.00 39.46 5.14
240 241 5.944049 TCTGTTCGAGCGTCAATTAATAC 57.056 39.130 0.00 0.00 0.00 1.89
273 274 1.807742 GAGACGATAGCGATGCTACCT 59.192 52.381 7.69 0.00 44.24 3.08
282 283 2.001159 AGCCGTATAGAGACGATAGCG 58.999 52.381 0.00 0.00 45.82 4.26
294 295 6.810676 CGTCTAGACTACAGAATAGCCGTATA 59.189 42.308 20.34 0.00 0.00 1.47
304 305 4.212143 TGCTACCGTCTAGACTACAGAA 57.788 45.455 20.34 6.24 0.00 3.02
305 306 3.900966 TGCTACCGTCTAGACTACAGA 57.099 47.619 20.34 1.16 0.00 3.41
306 307 3.304123 GCATGCTACCGTCTAGACTACAG 60.304 52.174 20.34 13.95 0.00 2.74
307 308 2.617308 GCATGCTACCGTCTAGACTACA 59.383 50.000 20.34 11.03 0.00 2.74
308 309 2.879646 AGCATGCTACCGTCTAGACTAC 59.120 50.000 21.21 6.02 0.00 2.73
309 310 3.210232 AGCATGCTACCGTCTAGACTA 57.790 47.619 21.21 6.50 0.00 2.59
310 311 2.060050 AGCATGCTACCGTCTAGACT 57.940 50.000 21.21 5.62 0.00 3.24
312 313 3.506455 GGAATAGCATGCTACCGTCTAGA 59.494 47.826 29.11 6.52 0.00 2.43
313 314 3.670895 CGGAATAGCATGCTACCGTCTAG 60.671 52.174 32.95 21.81 35.08 2.43
315 316 1.000163 CGGAATAGCATGCTACCGTCT 60.000 52.381 32.95 17.28 35.08 4.18
316 317 1.000607 TCGGAATAGCATGCTACCGTC 60.001 52.381 36.28 28.36 38.50 4.79
318 319 2.061773 CTTCGGAATAGCATGCTACCG 58.938 52.381 34.42 34.42 38.63 4.02
319 320 3.060602 GACTTCGGAATAGCATGCTACC 58.939 50.000 29.11 23.77 0.00 3.18
320 321 3.060602 GGACTTCGGAATAGCATGCTAC 58.939 50.000 29.11 17.20 0.00 3.58
321 322 2.037251 GGGACTTCGGAATAGCATGCTA 59.963 50.000 28.72 28.72 0.00 3.49
322 323 1.202698 GGGACTTCGGAATAGCATGCT 60.203 52.381 25.99 25.99 0.00 3.79
323 324 1.202698 AGGGACTTCGGAATAGCATGC 60.203 52.381 10.51 10.51 27.25 4.06
324 325 2.918712 AGGGACTTCGGAATAGCATG 57.081 50.000 0.00 0.00 27.25 4.06
338 339 4.918810 ATGTGTGTTTTCAGAAAGGGAC 57.081 40.909 0.00 0.00 0.00 4.46
339 340 5.200483 AGAATGTGTGTTTTCAGAAAGGGA 58.800 37.500 0.00 0.00 0.00 4.20
342 343 7.019774 TCAGAGAATGTGTGTTTTCAGAAAG 57.980 36.000 0.00 0.00 0.00 2.62
361 362 2.276540 CGTAACGACGCAGAAATCAGAG 59.723 50.000 0.00 0.00 43.21 3.35
362 363 2.247637 CGTAACGACGCAGAAATCAGA 58.752 47.619 0.00 0.00 43.21 3.27
363 364 2.678443 CGTAACGACGCAGAAATCAG 57.322 50.000 0.00 0.00 43.21 2.90
501 517 0.318614 CGACGGTGGCAAGCATTTTT 60.319 50.000 0.00 0.00 0.00 1.94
502 518 1.285641 CGACGGTGGCAAGCATTTT 59.714 52.632 0.00 0.00 0.00 1.82
503 519 2.625823 CCGACGGTGGCAAGCATTT 61.626 57.895 5.48 0.00 0.00 2.32
504 520 3.055719 CCGACGGTGGCAAGCATT 61.056 61.111 5.48 0.00 0.00 3.56
505 521 4.015406 TCCGACGGTGGCAAGCAT 62.015 61.111 14.79 0.00 0.00 3.79
506 522 4.980805 GTCCGACGGTGGCAAGCA 62.981 66.667 14.79 0.00 0.00 3.91
640 657 4.463879 CCTCCCCTGTCAGCGCTG 62.464 72.222 31.53 31.53 0.00 5.18
818 852 2.822255 GTGCGTGTGTGGTGTGGT 60.822 61.111 0.00 0.00 0.00 4.16
819 853 2.821810 TGTGCGTGTGTGGTGTGG 60.822 61.111 0.00 0.00 0.00 4.17
820 854 2.403186 GTGTGCGTGTGTGGTGTG 59.597 61.111 0.00 0.00 0.00 3.82
857 891 2.298610 AGCTAGAGTATGTGCGTGCTA 58.701 47.619 0.00 0.00 0.00 3.49
952 987 4.457466 CAATTTATAGCGGGGTACAGGTT 58.543 43.478 0.00 0.00 0.00 3.50
980 1015 0.107703 ATGGAAAATGAGCTCGCGGA 60.108 50.000 6.13 0.00 0.00 5.54
993 1028 2.509786 GGTACGCGGCGATGGAAA 60.510 61.111 30.94 3.87 0.00 3.13
1314 1361 4.377708 AGCATGACGAGCGTGGCA 62.378 61.111 0.00 0.00 37.01 4.92
1407 1466 5.111989 CACGCAAGAAGATTAGATGGAGAA 58.888 41.667 0.00 0.00 43.62 2.87
1408 1467 4.160439 ACACGCAAGAAGATTAGATGGAGA 59.840 41.667 0.00 0.00 43.62 3.71
1410 1469 4.183865 CACACGCAAGAAGATTAGATGGA 58.816 43.478 0.00 0.00 43.62 3.41
1411 1470 3.242543 GCACACGCAAGAAGATTAGATGG 60.243 47.826 0.00 0.00 43.62 3.51
1472 1581 3.339093 GGCTACCCTGCCCCTTGT 61.339 66.667 0.00 0.00 46.82 3.16
1505 1619 2.154462 ACTGGGCTTCTGAAACATTCG 58.846 47.619 0.00 0.00 0.00 3.34
1613 1745 7.702772 CGTAGTGATTGATTGAAACTAGCTAGT 59.297 37.037 20.95 20.95 38.39 2.57
1614 1746 7.702772 ACGTAGTGATTGATTGAAACTAGCTAG 59.297 37.037 19.44 19.44 42.51 3.42
1730 1867 1.658994 AAAGCCGACGTGAAGTGAAA 58.341 45.000 0.00 0.00 0.00 2.69
1733 1870 1.192534 GAGAAAAGCCGACGTGAAGTG 59.807 52.381 0.00 0.00 0.00 3.16
1734 1871 1.068741 AGAGAAAAGCCGACGTGAAGT 59.931 47.619 0.00 0.00 0.00 3.01
1735 1872 1.721926 GAGAGAAAAGCCGACGTGAAG 59.278 52.381 0.00 0.00 0.00 3.02
1760 1915 3.471806 GAAGGGGGTCGAGGCCTC 61.472 72.222 23.79 23.79 0.00 4.70
1763 1918 2.538512 GAAAGGAAGGGGGTCGAGGC 62.539 65.000 0.00 0.00 0.00 4.70
1764 1919 1.602771 GAAAGGAAGGGGGTCGAGG 59.397 63.158 0.00 0.00 0.00 4.63
1765 1920 1.602771 GGAAAGGAAGGGGGTCGAG 59.397 63.158 0.00 0.00 0.00 4.04
1766 1921 2.288025 CGGAAAGGAAGGGGGTCGA 61.288 63.158 0.00 0.00 0.00 4.20
1767 1922 2.267961 CGGAAAGGAAGGGGGTCG 59.732 66.667 0.00 0.00 0.00 4.79
1830 1989 1.896660 GTGCATGTGTCGGTTGGGT 60.897 57.895 0.00 0.00 0.00 4.51
1849 2008 2.750237 GGTTGTCGGGGTGCATCC 60.750 66.667 7.76 7.76 0.00 3.51
1850 2009 0.893727 AAAGGTTGTCGGGGTGCATC 60.894 55.000 0.00 0.00 0.00 3.91
1851 2010 1.152830 AAAGGTTGTCGGGGTGCAT 59.847 52.632 0.00 0.00 0.00 3.96
1881 2040 2.683968 AGTGCGGTTATACACACACAG 58.316 47.619 0.00 0.00 39.30 3.66
1886 2045 4.703575 AGAACTCTAGTGCGGTTATACACA 59.296 41.667 0.00 0.00 39.30 3.72
1892 2051 5.204409 TCAAAAGAACTCTAGTGCGGTTA 57.796 39.130 0.00 0.00 0.00 2.85
1893 2052 4.058817 CTCAAAAGAACTCTAGTGCGGTT 58.941 43.478 0.00 0.00 0.00 4.44
1894 2053 3.654414 CTCAAAAGAACTCTAGTGCGGT 58.346 45.455 0.00 0.00 0.00 5.68
1895 2054 2.413453 GCTCAAAAGAACTCTAGTGCGG 59.587 50.000 0.00 0.00 0.00 5.69
1897 2056 4.612486 GCTTGCTCAAAAGAACTCTAGTGC 60.612 45.833 0.00 0.00 0.00 4.40
1899 2058 4.708177 TGCTTGCTCAAAAGAACTCTAGT 58.292 39.130 0.00 0.00 0.00 2.57
1900 2059 5.679734 TTGCTTGCTCAAAAGAACTCTAG 57.320 39.130 0.00 0.00 0.00 2.43
1901 2060 5.506317 GCTTTGCTTGCTCAAAAGAACTCTA 60.506 40.000 7.72 0.00 35.75 2.43
1904 2063 3.131755 AGCTTTGCTTGCTCAAAAGAACT 59.868 39.130 7.72 0.00 33.89 3.01
1983 2151 2.176369 CAACGGCAAGTTTATCATGCG 58.824 47.619 0.00 0.00 42.02 4.73
1987 2155 4.069304 AGTTAGCAACGGCAAGTTTATCA 58.931 39.130 0.00 0.00 42.02 2.15
1996 2164 1.961793 AAGACAAGTTAGCAACGGCA 58.038 45.000 0.00 0.00 44.61 5.69
2040 2215 2.437413 ACAGACGATCAGTAGCTGTCA 58.563 47.619 0.00 0.00 34.10 3.58
2047 2222 3.317150 CAAGCACAACAGACGATCAGTA 58.683 45.455 0.00 0.00 0.00 2.74
2054 2229 0.027455 TTTCGCAAGCACAACAGACG 59.973 50.000 0.00 0.00 37.18 4.18
2167 2347 6.077838 CGACAGCTGGTAAATAAAAACAGTC 58.922 40.000 19.93 0.00 0.00 3.51
2191 2400 3.945285 ACACCATAATTCATTGACCGACC 59.055 43.478 0.00 0.00 0.00 4.79
2195 2404 7.807977 ATCAGTACACCATAATTCATTGACC 57.192 36.000 0.00 0.00 0.00 4.02
2204 2413 9.692749 CACGAGTAATAATCAGTACACCATAAT 57.307 33.333 0.00 0.00 0.00 1.28
2206 2415 7.286087 ACCACGAGTAATAATCAGTACACCATA 59.714 37.037 0.00 0.00 0.00 2.74
2207 2416 6.097839 ACCACGAGTAATAATCAGTACACCAT 59.902 38.462 0.00 0.00 0.00 3.55
2209 2418 5.899299 ACCACGAGTAATAATCAGTACACC 58.101 41.667 0.00 0.00 0.00 4.16
2211 2420 5.355071 ACGACCACGAGTAATAATCAGTACA 59.645 40.000 0.00 0.00 42.66 2.90
2212 2421 5.680229 CACGACCACGAGTAATAATCAGTAC 59.320 44.000 0.00 0.00 42.66 2.73
2213 2422 5.220912 CCACGACCACGAGTAATAATCAGTA 60.221 44.000 0.00 0.00 42.66 2.74
2216 2425 3.181484 CCCACGACCACGAGTAATAATCA 60.181 47.826 0.00 0.00 42.66 2.57
2217 2426 3.181483 ACCCACGACCACGAGTAATAATC 60.181 47.826 0.00 0.00 42.66 1.75
2218 2427 2.762327 ACCCACGACCACGAGTAATAAT 59.238 45.455 0.00 0.00 42.66 1.28
2219 2428 2.170166 ACCCACGACCACGAGTAATAA 58.830 47.619 0.00 0.00 42.66 1.40
2221 2430 0.971386 AACCCACGACCACGAGTAAT 59.029 50.000 0.00 0.00 42.66 1.89
2222 2431 0.314935 GAACCCACGACCACGAGTAA 59.685 55.000 0.00 0.00 42.66 2.24
2223 2432 1.526575 GGAACCCACGACCACGAGTA 61.527 60.000 0.00 0.00 42.66 2.59
2224 2433 2.732658 GAACCCACGACCACGAGT 59.267 61.111 0.00 0.00 42.66 4.18
2225 2434 2.048503 GGAACCCACGACCACGAG 60.049 66.667 0.00 0.00 42.66 4.18
2667 2880 8.301002 GGTACGTATACTACTACAGTACTAGCT 58.699 40.741 0.00 0.00 42.56 3.32
2668 2881 8.301002 AGGTACGTATACTACTACAGTACTAGC 58.699 40.741 0.00 0.00 42.56 3.42
2675 2888 9.604626 GCAATTAAGGTACGTATACTACTACAG 57.395 37.037 0.00 0.00 0.00 2.74
2677 2890 7.269297 GCGCAATTAAGGTACGTATACTACTAC 59.731 40.741 0.30 0.00 0.00 2.73
2678 2891 7.298122 GCGCAATTAAGGTACGTATACTACTA 58.702 38.462 0.30 0.00 0.00 1.82
2679 2892 6.145535 GCGCAATTAAGGTACGTATACTACT 58.854 40.000 0.30 0.00 0.00 2.57
2680 2893 5.343325 GGCGCAATTAAGGTACGTATACTAC 59.657 44.000 10.83 3.13 0.00 2.73
2681 2894 5.460646 GGCGCAATTAAGGTACGTATACTA 58.539 41.667 10.83 0.00 0.00 1.82
2682 2895 4.301628 GGCGCAATTAAGGTACGTATACT 58.698 43.478 10.83 0.00 0.00 2.12
2683 2896 3.120121 CGGCGCAATTAAGGTACGTATAC 59.880 47.826 10.83 0.00 0.00 1.47
2685 2898 2.129607 CGGCGCAATTAAGGTACGTAT 58.870 47.619 10.83 0.00 0.00 3.06
2686 2899 1.558741 CGGCGCAATTAAGGTACGTA 58.441 50.000 10.83 0.00 0.00 3.57
2687 2900 1.698714 GCGGCGCAATTAAGGTACGT 61.699 55.000 29.21 0.00 0.00 3.57
2688 2901 1.011574 GCGGCGCAATTAAGGTACG 60.012 57.895 29.21 0.00 0.00 3.67
2711 2935 1.787989 CGTGTTCGACTGCATGCATTC 60.788 52.381 22.97 23.59 39.71 2.67
2852 3084 2.144078 TGAAGAGGCGGGTGTCCAA 61.144 57.895 0.00 0.00 0.00 3.53
2854 3086 2.047179 GTGAAGAGGCGGGTGTCC 60.047 66.667 0.00 0.00 0.00 4.02
3193 3443 6.936900 AGTTAACTGATTACTGCAGTGATTGT 59.063 34.615 29.57 22.87 45.27 2.71
3211 3464 6.681729 TGAGAACCACAGGATTAGTTAACT 57.318 37.500 13.68 13.68 0.00 2.24
3223 3479 3.006217 TCACACTGAGATGAGAACCACAG 59.994 47.826 0.00 0.00 0.00 3.66
3378 3634 3.784412 CGCCGTTGGTGCCGTTAG 61.784 66.667 0.00 0.00 0.00 2.34
3463 3725 4.435436 CGCTAGTGGCAGGTCGCA 62.435 66.667 0.00 0.00 45.17 5.10
3468 3730 2.105930 GAGCTCGCTAGTGGCAGG 59.894 66.667 15.95 0.00 41.91 4.85
3502 3764 4.499023 CGCATACGCACGCACCAC 62.499 66.667 0.00 0.00 38.40 4.16
3534 3796 1.057847 GAGATCGAAGAAACGCACGTG 59.942 52.381 12.28 12.28 43.58 4.49
3550 3815 5.987953 CAGATTGATTGACCATACACGAGAT 59.012 40.000 0.00 0.00 0.00 2.75
3567 3832 3.774066 CATCACACGTAGAGCAGATTGA 58.226 45.455 0.00 0.00 0.00 2.57
3568 3833 2.283617 GCATCACACGTAGAGCAGATTG 59.716 50.000 0.00 0.00 0.00 2.67
3810 4087 3.195610 AGTGATCGGTGCTCAGTTGAATA 59.804 43.478 0.00 0.00 0.00 1.75
3838 4115 9.583765 GTGTTAGGAGTAGTGGACTAATTAAAG 57.416 37.037 0.00 0.00 39.06 1.85
3840 4117 8.890410 AGTGTTAGGAGTAGTGGACTAATTAA 57.110 34.615 0.00 0.00 39.06 1.40
3841 4118 9.979897 TTAGTGTTAGGAGTAGTGGACTAATTA 57.020 33.333 0.00 0.00 39.06 1.40
3842 4119 8.747471 GTTAGTGTTAGGAGTAGTGGACTAATT 58.253 37.037 0.00 0.00 39.06 1.40
3843 4120 8.114743 AGTTAGTGTTAGGAGTAGTGGACTAAT 58.885 37.037 0.00 0.00 39.06 1.73
3889 4166 2.546494 GCACACACAGGACACAGCC 61.546 63.158 0.00 0.00 0.00 4.85
3892 4169 2.629336 TATTGCACACACAGGACACA 57.371 45.000 0.00 0.00 0.00 3.72
3938 4233 6.837471 AGCAGTAGTAGTGTTAAGCTAGTT 57.163 37.500 6.84 0.00 0.00 2.24
3940 4235 7.556733 AGTAGCAGTAGTAGTGTTAAGCTAG 57.443 40.000 6.84 0.00 34.42 3.42
3954 4249 6.701145 TCAAGTAGGATCAAGTAGCAGTAG 57.299 41.667 0.00 0.00 0.00 2.57
3955 4250 7.468768 CGAATCAAGTAGGATCAAGTAGCAGTA 60.469 40.741 0.00 0.00 0.00 2.74
3956 4251 6.552445 AATCAAGTAGGATCAAGTAGCAGT 57.448 37.500 0.00 0.00 0.00 4.40
3957 4252 5.689514 CGAATCAAGTAGGATCAAGTAGCAG 59.310 44.000 0.00 0.00 0.00 4.24
3958 4253 5.127194 ACGAATCAAGTAGGATCAAGTAGCA 59.873 40.000 0.00 0.00 0.00 3.49
3959 4254 5.460419 CACGAATCAAGTAGGATCAAGTAGC 59.540 44.000 0.00 0.00 0.00 3.58
3999 4294 7.349859 ACCTTTGGGATACTGTTAGATTCCATA 59.650 37.037 0.00 0.00 36.25 2.74
4008 4303 2.355310 CGGCACCTTTGGGATACTGTTA 60.355 50.000 0.00 0.00 36.25 2.41
4027 4322 2.666508 CGTGTGTAGATTCAAAGGACGG 59.333 50.000 0.00 0.00 0.00 4.79
4060 4355 1.631405 CCTGCACAAGGGAATGGAAA 58.369 50.000 0.00 0.00 43.15 3.13
4063 4358 1.607178 TGCCTGCACAAGGGAATGG 60.607 57.895 0.00 0.00 44.78 3.16
4116 4415 1.078759 CCGGCACTGAGCTAAAGACG 61.079 60.000 2.97 0.00 44.79 4.18
4143 4442 0.668535 CTGGACCGATGCTCGTATCA 59.331 55.000 5.15 0.69 38.40 2.15
4158 4457 2.356665 TAGTTGCCAACAAAGCTGGA 57.643 45.000 10.69 0.00 37.58 3.86
4161 4460 4.620982 GACAATTAGTTGCCAACAAAGCT 58.379 39.130 10.69 0.00 38.96 3.74
4168 4467 3.391965 ACGTACGACAATTAGTTGCCAA 58.608 40.909 24.41 0.00 38.96 4.52
4211 4510 9.599866 CACGGGCATGATATAATCTAATAGAAA 57.400 33.333 0.00 0.00 0.00 2.52
4213 4512 7.210174 GCACGGGCATGATATAATCTAATAGA 58.790 38.462 3.77 0.00 40.72 1.98
4214 4513 7.413475 GCACGGGCATGATATAATCTAATAG 57.587 40.000 3.77 0.00 40.72 1.73
4232 4531 0.310854 GAGTTTTTGTCCTGCACGGG 59.689 55.000 2.86 0.00 0.00 5.28
4267 4570 1.202582 ACCACAACTAGCGAGCACTAG 59.797 52.381 6.84 6.84 44.38 2.57
4278 4599 2.289819 CCCGGCTTAGAAACCACAACTA 60.290 50.000 0.00 0.00 0.00 2.24
4286 4607 1.542767 GGCTATCCCCGGCTTAGAAAC 60.543 57.143 0.00 0.00 0.00 2.78
4304 4625 2.347731 ACGTGCTTTTTCTAGCTAGGC 58.652 47.619 20.58 15.22 41.76 3.93
4305 4626 3.864003 GGTACGTGCTTTTTCTAGCTAGG 59.136 47.826 20.58 5.30 41.76 3.02
4306 4627 4.491676 TGGTACGTGCTTTTTCTAGCTAG 58.508 43.478 15.01 15.01 41.76 3.42
4307 4628 4.021719 ACTGGTACGTGCTTTTTCTAGCTA 60.022 41.667 3.01 0.00 41.76 3.32
4308 4629 3.244112 ACTGGTACGTGCTTTTTCTAGCT 60.244 43.478 3.01 0.00 41.76 3.32
4309 4630 3.064931 ACTGGTACGTGCTTTTTCTAGC 58.935 45.455 3.01 0.00 41.59 3.42
4310 4631 3.432252 CCACTGGTACGTGCTTTTTCTAG 59.568 47.826 3.01 0.00 33.08 2.43
4311 4632 3.395639 CCACTGGTACGTGCTTTTTCTA 58.604 45.455 3.01 0.00 33.08 2.10
4313 4634 1.334689 GCCACTGGTACGTGCTTTTTC 60.335 52.381 3.01 0.00 33.08 2.29
4314 4635 0.666374 GCCACTGGTACGTGCTTTTT 59.334 50.000 3.01 0.00 33.08 1.94
4328 4649 1.228894 TCCGTCCTCTTCTGCCACT 60.229 57.895 0.00 0.00 0.00 4.00
4340 4661 3.482436 AGAGTAGTGATGATCTCCGTCC 58.518 50.000 0.00 0.00 0.00 4.79
4345 4666 4.808364 GCCAACAAGAGTAGTGATGATCTC 59.192 45.833 0.00 0.00 0.00 2.75
4368 4696 3.058160 CTGCGCCAAAGGGTCCAG 61.058 66.667 4.18 0.00 36.17 3.86
4407 4736 4.142730 ACGTCTACACACCGTATCTCTTTC 60.143 45.833 0.00 0.00 32.22 2.62
4425 4754 2.731341 CGATCAGAAAAGGCGTACGTCT 60.731 50.000 18.34 18.34 0.00 4.18
4427 4756 1.200716 TCGATCAGAAAAGGCGTACGT 59.799 47.619 17.90 0.00 0.00 3.57
4428 4757 1.904144 TCGATCAGAAAAGGCGTACG 58.096 50.000 11.84 11.84 0.00 3.67
4429 4758 2.468040 CGATCGATCAGAAAAGGCGTAC 59.532 50.000 24.40 0.00 0.00 3.67
4430 4759 2.098607 ACGATCGATCAGAAAAGGCGTA 59.901 45.455 24.34 0.00 0.00 4.42
4456 4801 0.526954 ATCGGCAAAGCTACGTACCG 60.527 55.000 12.42 12.42 41.92 4.02
4461 4806 1.083806 TGCAGATCGGCAAAGCTACG 61.084 55.000 18.56 0.00 41.65 3.51
4462 4807 2.767536 TGCAGATCGGCAAAGCTAC 58.232 52.632 18.56 0.00 41.65 3.58
4485 4830 1.544686 CAACGCAACACACTTGGTTC 58.455 50.000 0.00 0.00 0.00 3.62
4487 4832 1.138671 GCAACGCAACACACTTGGT 59.861 52.632 0.00 0.00 0.00 3.67
4488 4833 1.938814 CGCAACGCAACACACTTGG 60.939 57.895 0.00 0.00 0.00 3.61
4489 4834 0.026933 TACGCAACGCAACACACTTG 59.973 50.000 0.00 0.00 0.00 3.16
4571 5026 1.732683 CATGCCAAAAACGACGGCC 60.733 57.895 0.00 0.00 45.63 6.13
4594 5049 1.433534 TGTCGCGCAAATGTGTCATA 58.566 45.000 8.75 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.