Multiple sequence alignment - TraesCS7B01G073500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G073500 chr7B 100.000 3059 0 0 1 3059 82443811 82446869 0.000000e+00 5650.0
1 TraesCS7B01G073500 chr7A 92.118 1459 106 4 938 2392 125277455 125278908 0.000000e+00 2049.0
2 TraesCS7B01G073500 chr7A 80.534 1310 221 16 1094 2380 19547553 19546255 0.000000e+00 976.0
3 TraesCS7B01G073500 chr7A 83.361 595 85 11 4 588 125276217 125276807 3.470000e-149 538.0
4 TraesCS7B01G073500 chr7A 83.333 198 10 5 679 876 125277277 125277451 8.780000e-36 161.0
5 TraesCS7B01G073500 chr4D 80.376 1330 224 21 1078 2381 488607630 488608948 0.000000e+00 976.0
6 TraesCS7B01G073500 chr4D 77.393 1327 240 36 1078 2380 488514063 488515353 0.000000e+00 734.0
7 TraesCS7B01G073500 chr4D 86.207 58 6 2 270 325 436953136 436953193 9.160000e-06 62.1
8 TraesCS7B01G073500 chr3B 97.519 524 9 2 2536 3059 545494422 545493903 0.000000e+00 893.0
9 TraesCS7B01G073500 chr3B 97.024 168 5 0 2848 3015 801017102 801017269 1.800000e-72 283.0
10 TraesCS7B01G073500 chr5A 77.794 1396 244 40 1021 2392 670344921 670346274 0.000000e+00 800.0
11 TraesCS7B01G073500 chr5A 77.318 1111 205 29 1274 2374 670401078 670402151 2.020000e-171 612.0
12 TraesCS7B01G073500 chr5A 88.679 53 4 2 285 335 474580050 474579998 2.550000e-06 63.9
13 TraesCS7B01G073500 chr4A 77.957 1175 213 27 1270 2429 731238204 731239347 0.000000e+00 693.0
14 TraesCS7B01G073500 chr4A 86.207 58 6 2 270 325 26746423 26746366 9.160000e-06 62.1
15 TraesCS7B01G073500 chr4A 97.222 36 1 0 290 325 26766231 26766196 9.160000e-06 62.1
16 TraesCS7B01G073500 chr4B 75.639 1408 270 44 1001 2380 625400985 625402347 1.550000e-177 632.0
17 TraesCS7B01G073500 chr4B 77.903 534 96 15 1078 1591 625380720 625381251 2.290000e-81 313.0
18 TraesCS7B01G073500 chr4B 85.965 57 6 2 271 325 538963946 538964002 3.290000e-05 60.2
19 TraesCS7B01G073500 chr7D 87.709 537 47 5 2540 3059 346803676 346803142 2.610000e-170 608.0
20 TraesCS7B01G073500 chr7D 89.583 48 5 0 278 325 161480325 161480278 9.160000e-06 62.1
21 TraesCS7B01G073500 chr2D 91.667 48 4 0 278 325 255617877 255617924 1.970000e-07 67.6
22 TraesCS7B01G073500 chr6D 90.000 50 1 4 278 325 249956874 249956921 9.160000e-06 62.1
23 TraesCS7B01G073500 chr6D 97.297 37 0 1 493 528 369693848 369693884 9.160000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G073500 chr7B 82443811 82446869 3058 False 5650 5650 100.000000 1 3059 1 chr7B.!!$F1 3058
1 TraesCS7B01G073500 chr7A 19546255 19547553 1298 True 976 976 80.534000 1094 2380 1 chr7A.!!$R1 1286
2 TraesCS7B01G073500 chr7A 125276217 125278908 2691 False 916 2049 86.270667 4 2392 3 chr7A.!!$F1 2388
3 TraesCS7B01G073500 chr4D 488607630 488608948 1318 False 976 976 80.376000 1078 2381 1 chr4D.!!$F3 1303
4 TraesCS7B01G073500 chr4D 488514063 488515353 1290 False 734 734 77.393000 1078 2380 1 chr4D.!!$F2 1302
5 TraesCS7B01G073500 chr3B 545493903 545494422 519 True 893 893 97.519000 2536 3059 1 chr3B.!!$R1 523
6 TraesCS7B01G073500 chr5A 670344921 670346274 1353 False 800 800 77.794000 1021 2392 1 chr5A.!!$F1 1371
7 TraesCS7B01G073500 chr5A 670401078 670402151 1073 False 612 612 77.318000 1274 2374 1 chr5A.!!$F2 1100
8 TraesCS7B01G073500 chr4A 731238204 731239347 1143 False 693 693 77.957000 1270 2429 1 chr4A.!!$F1 1159
9 TraesCS7B01G073500 chr4B 625400985 625402347 1362 False 632 632 75.639000 1001 2380 1 chr4B.!!$F3 1379
10 TraesCS7B01G073500 chr4B 625380720 625381251 531 False 313 313 77.903000 1078 1591 1 chr4B.!!$F2 513
11 TraesCS7B01G073500 chr7D 346803142 346803676 534 True 608 608 87.709000 2540 3059 1 chr7D.!!$R2 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.02877 TTCGTGCGAGCCAGTTTTTG 59.971 50.0 0.0 0.0 0.00 2.44 F
606 617 0.03213 TTCGGCTGATGGATAGCGAC 59.968 55.0 0.0 0.0 42.03 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2479 0.249489 CCGAGTCGATGATTGTCCCC 60.249 60.0 15.64 0.0 0.00 4.81 R
2474 3013 0.028902 GCCTGTGACAAAACCACGAC 59.971 55.0 0.00 0.0 37.34 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.110823 AGCGCTTTAAGTTTCGTGCG 60.111 50.000 2.64 0.00 45.12 5.34
26 27 1.853230 CGCTTTAAGTTTCGTGCGAG 58.147 50.000 0.00 0.00 45.15 5.03
30 31 1.144969 TTAAGTTTCGTGCGAGCCAG 58.855 50.000 0.00 0.00 0.00 4.85
34 35 0.028902 GTTTCGTGCGAGCCAGTTTT 59.971 50.000 0.00 0.00 0.00 2.43
36 37 0.028770 TTCGTGCGAGCCAGTTTTTG 59.971 50.000 0.00 0.00 0.00 2.44
44 45 1.065600 GCCAGTTTTTGCGTGCAGA 59.934 52.632 0.00 0.00 0.00 4.26
57 58 1.076412 TGCAGACCAGGCAACCAAA 60.076 52.632 0.00 0.00 38.54 3.28
64 65 2.890945 GACCAGGCAACCAAACAACTAT 59.109 45.455 0.00 0.00 37.17 2.12
65 66 2.627699 ACCAGGCAACCAAACAACTATG 59.372 45.455 0.00 0.00 37.17 2.23
68 69 4.462483 CCAGGCAACCAAACAACTATGTAT 59.538 41.667 0.00 0.00 36.22 2.29
72 73 7.754924 CAGGCAACCAAACAACTATGTATTTAG 59.245 37.037 0.00 0.00 36.22 1.85
74 75 6.530181 GCAACCAAACAACTATGTATTTAGCC 59.470 38.462 0.00 0.00 39.40 3.93
77 78 5.270853 CAAACAACTATGTATTTAGCCCGC 58.729 41.667 0.00 0.00 39.40 6.13
83 84 1.200519 TGTATTTAGCCCGCCAGAGT 58.799 50.000 0.00 0.00 0.00 3.24
100 101 0.250467 AGTCTGGTTGCGCTTGATGT 60.250 50.000 9.73 0.00 0.00 3.06
102 103 1.804151 GTCTGGTTGCGCTTGATGTAA 59.196 47.619 9.73 0.00 0.00 2.41
107 108 2.095372 GGTTGCGCTTGATGTAACCTAC 59.905 50.000 9.73 0.00 38.16 3.18
122 123 2.223745 ACCTACCAAACGCGTCATTTT 58.776 42.857 14.44 0.00 0.00 1.82
124 125 2.224549 CCTACCAAACGCGTCATTTTGA 59.775 45.455 19.98 3.40 35.13 2.69
126 127 2.456010 ACCAAACGCGTCATTTTGAAC 58.544 42.857 19.98 0.00 35.13 3.18
127 128 1.446465 CCAAACGCGTCATTTTGAACG 59.554 47.619 19.98 3.06 35.13 3.95
139 143 0.874390 TTTGAACGTGATGCTCTGCC 59.126 50.000 0.00 0.00 0.00 4.85
149 154 2.131183 GATGCTCTGCCATCGTTCTAC 58.869 52.381 0.00 0.00 33.06 2.59
150 155 0.175760 TGCTCTGCCATCGTTCTACC 59.824 55.000 0.00 0.00 0.00 3.18
151 156 0.530870 GCTCTGCCATCGTTCTACCC 60.531 60.000 0.00 0.00 0.00 3.69
160 165 0.524862 TCGTTCTACCCGCTTGTCTC 59.475 55.000 0.00 0.00 0.00 3.36
161 166 0.526662 CGTTCTACCCGCTTGTCTCT 59.473 55.000 0.00 0.00 0.00 3.10
163 168 2.338500 GTTCTACCCGCTTGTCTCTTG 58.662 52.381 0.00 0.00 0.00 3.02
168 176 0.875059 CCCGCTTGTCTCTTGGTTTC 59.125 55.000 0.00 0.00 0.00 2.78
173 181 3.433615 CGCTTGTCTCTTGGTTTCCTAAG 59.566 47.826 0.00 0.00 0.00 2.18
177 185 5.130292 TGTCTCTTGGTTTCCTAAGTACG 57.870 43.478 0.00 0.00 0.00 3.67
178 186 4.021719 TGTCTCTTGGTTTCCTAAGTACGG 60.022 45.833 0.00 0.00 0.00 4.02
179 187 4.021632 GTCTCTTGGTTTCCTAAGTACGGT 60.022 45.833 0.00 0.00 0.00 4.83
181 189 2.460757 TGGTTTCCTAAGTACGGTGC 57.539 50.000 0.00 0.00 0.00 5.01
187 195 5.413499 GTTTCCTAAGTACGGTGCATCTTA 58.587 41.667 0.00 0.00 0.00 2.10
188 196 5.864418 TTCCTAAGTACGGTGCATCTTAT 57.136 39.130 0.00 0.00 0.00 1.73
191 199 6.278363 TCCTAAGTACGGTGCATCTTATTTC 58.722 40.000 0.00 0.00 0.00 2.17
194 202 7.381678 CCTAAGTACGGTGCATCTTATTTCTAC 59.618 40.741 0.00 0.00 0.00 2.59
196 204 6.273825 AGTACGGTGCATCTTATTTCTACTG 58.726 40.000 0.00 0.00 0.00 2.74
221 229 8.935844 TGTAGATGTTATGTCAGTTGATTGAAC 58.064 33.333 0.00 0.00 34.40 3.18
232 240 2.488153 GTTGATTGAACCTAGCCACACC 59.512 50.000 0.00 0.00 0.00 4.16
240 248 2.037144 ACCTAGCCACACCCTATTACG 58.963 52.381 0.00 0.00 0.00 3.18
241 249 1.270147 CCTAGCCACACCCTATTACGC 60.270 57.143 0.00 0.00 0.00 4.42
242 250 0.754472 TAGCCACACCCTATTACGCC 59.246 55.000 0.00 0.00 0.00 5.68
247 255 2.681344 CCACACCCTATTACGCCTTTTC 59.319 50.000 0.00 0.00 0.00 2.29
320 328 9.967451 TGTCCCATAATATAAGAGTGTTTTTGA 57.033 29.630 0.00 0.00 0.00 2.69
336 344 7.897575 TGTTTTTGACACTGCTTTGTATTTT 57.102 28.000 0.00 0.00 32.00 1.82
337 345 8.988064 TGTTTTTGACACTGCTTTGTATTTTA 57.012 26.923 0.00 0.00 32.00 1.52
376 384 8.662781 TGGTTGATTGATCTGCTAATACTAAC 57.337 34.615 0.00 0.00 0.00 2.34
386 394 9.849166 GATCTGCTAATACTAACTGATAGTTCC 57.151 37.037 2.83 0.00 42.31 3.62
394 402 8.859236 ATACTAACTGATAGTTCCGCTATACA 57.141 34.615 2.83 0.00 42.31 2.29
419 427 9.740239 CATACATTAAGCAAAGAAATAGCACAT 57.260 29.630 0.00 0.00 0.00 3.21
449 457 5.446260 AAAATGGTATACTCCCTCCGTTT 57.554 39.130 2.25 0.00 39.77 3.60
450 458 4.417426 AATGGTATACTCCCTCCGTTTG 57.583 45.455 2.25 0.00 0.00 2.93
464 472 5.240844 CCCTCCGTTTGAAAATAAGTGTCTT 59.759 40.000 0.00 0.00 0.00 3.01
466 474 7.040961 CCCTCCGTTTGAAAATAAGTGTCTTTA 60.041 37.037 0.00 0.00 0.00 1.85
514 525 8.310122 AGTATCAGCAACATTTATTTTGGGAT 57.690 30.769 0.00 0.00 0.00 3.85
518 529 7.999679 TCAGCAACATTTATTTTGGGATAGAG 58.000 34.615 0.00 0.00 0.00 2.43
522 533 8.348507 GCAACATTTATTTTGGGATAGAGAGAG 58.651 37.037 0.00 0.00 0.00 3.20
548 559 5.949650 TGAAATAATCAACGGTGTCGAGCG 61.950 45.833 0.00 0.00 40.13 5.03
556 567 2.506438 GTGTCGAGCGTAGGTGCC 60.506 66.667 0.00 0.00 39.88 5.01
582 593 1.798813 ACGGTCGAGAGCAACATTTTC 59.201 47.619 3.15 0.00 0.00 2.29
588 599 3.751175 TCGAGAGCAACATTTTCCGATTT 59.249 39.130 0.00 0.00 0.00 2.17
589 600 4.091424 CGAGAGCAACATTTTCCGATTTC 58.909 43.478 0.00 0.00 0.00 2.17
603 614 1.728971 CGATTTCGGCTGATGGATAGC 59.271 52.381 0.00 0.00 40.41 2.97
604 615 1.728971 GATTTCGGCTGATGGATAGCG 59.271 52.381 0.00 0.00 42.03 4.26
606 617 0.032130 TTCGGCTGATGGATAGCGAC 59.968 55.000 0.00 0.00 42.03 5.19
622 1063 1.871772 GACTTTGAGTGCGCTGCAT 59.128 52.632 3.44 0.00 41.91 3.96
629 1070 0.649475 GAGTGCGCTGCATGACTTAG 59.351 55.000 3.44 0.00 41.91 2.18
630 1071 1.061570 GTGCGCTGCATGACTTAGC 59.938 57.895 9.73 0.00 41.91 3.09
631 1072 1.375780 TGCGCTGCATGACTTAGCA 60.376 52.632 9.73 0.00 37.29 3.49
636 1077 3.888424 TGCATGACTTAGCAGCCAT 57.112 47.368 0.00 0.00 35.51 4.40
637 1078 1.385528 TGCATGACTTAGCAGCCATG 58.614 50.000 0.00 4.64 42.36 3.66
638 1079 1.065272 TGCATGACTTAGCAGCCATGA 60.065 47.619 11.53 0.00 42.12 3.07
639 1080 1.602851 GCATGACTTAGCAGCCATGAG 59.397 52.381 11.53 0.00 42.12 2.90
640 1081 1.602851 CATGACTTAGCAGCCATGAGC 59.397 52.381 0.00 0.00 42.12 4.26
641 1082 3.003408 CATGACTTAGCAGCCATGAGCA 61.003 50.000 8.58 0.00 42.12 4.26
642 1083 4.304434 CATGACTTAGCAGCCATGAGCAT 61.304 47.826 8.58 0.00 42.12 3.79
643 1084 5.041051 CATGACTTAGCAGCCATGAGCATA 61.041 45.833 8.58 0.00 42.12 3.14
644 1085 6.318266 CATGACTTAGCAGCCATGAGCATAT 61.318 44.000 8.58 0.00 42.12 1.78
645 1086 8.268065 CATGACTTAGCAGCCATGAGCATATG 62.268 46.154 0.00 0.00 42.12 1.78
653 1094 3.365832 GCCATGAGCATATGTTGTTTCG 58.634 45.455 4.29 0.00 42.97 3.46
654 1095 3.365832 CCATGAGCATATGTTGTTTCGC 58.634 45.455 4.29 0.00 0.00 4.70
655 1096 3.365832 CATGAGCATATGTTGTTTCGCC 58.634 45.455 4.29 0.00 0.00 5.54
656 1097 2.431454 TGAGCATATGTTGTTTCGCCA 58.569 42.857 4.29 0.00 0.00 5.69
657 1098 2.816672 TGAGCATATGTTGTTTCGCCAA 59.183 40.909 4.29 0.00 0.00 4.52
658 1099 3.254411 TGAGCATATGTTGTTTCGCCAAA 59.746 39.130 4.29 0.00 0.00 3.28
659 1100 4.233789 GAGCATATGTTGTTTCGCCAAAA 58.766 39.130 4.29 0.00 0.00 2.44
660 1101 4.626042 AGCATATGTTGTTTCGCCAAAAA 58.374 34.783 4.29 0.00 0.00 1.94
694 1135 5.058128 CATAAGCATATGTTCGACGTAGACG 59.942 44.000 4.29 0.00 39.48 4.18
706 1147 1.892468 CGTAGACGTACCACTTGCTC 58.108 55.000 0.00 0.00 34.11 4.26
731 1172 2.093394 TCGTTGGTTGGAGTCTTGTCAA 60.093 45.455 0.00 0.00 0.00 3.18
751 1192 4.277423 TCAAATGTATGCATGCATCCAGAG 59.723 41.667 35.35 22.12 37.82 3.35
759 1200 3.644738 TGCATGCATCCAGAGATCTTCTA 59.355 43.478 18.46 0.00 33.83 2.10
760 1201 4.102054 TGCATGCATCCAGAGATCTTCTAA 59.898 41.667 18.46 0.00 33.83 2.10
761 1202 5.061853 GCATGCATCCAGAGATCTTCTAAA 58.938 41.667 14.21 0.00 33.83 1.85
762 1203 5.530171 GCATGCATCCAGAGATCTTCTAAAA 59.470 40.000 14.21 0.00 33.83 1.52
763 1204 6.039047 GCATGCATCCAGAGATCTTCTAAAAA 59.961 38.462 14.21 0.00 33.83 1.94
764 1205 6.992063 TGCATCCAGAGATCTTCTAAAAAC 57.008 37.500 0.00 0.00 33.83 2.43
765 1206 6.715280 TGCATCCAGAGATCTTCTAAAAACT 58.285 36.000 0.00 0.00 33.83 2.66
766 1207 6.820656 TGCATCCAGAGATCTTCTAAAAACTC 59.179 38.462 0.00 0.00 33.83 3.01
767 1208 6.820656 GCATCCAGAGATCTTCTAAAAACTCA 59.179 38.462 0.00 0.00 33.83 3.41
768 1209 7.498570 GCATCCAGAGATCTTCTAAAAACTCAT 59.501 37.037 0.00 0.00 33.83 2.90
779 1220 9.371136 TCTTCTAAAAACTCATATACAGTGCTG 57.629 33.333 0.00 0.00 0.00 4.41
780 1221 7.539712 TCTAAAAACTCATATACAGTGCTGC 57.460 36.000 0.00 0.00 0.00 5.25
781 1222 7.331026 TCTAAAAACTCATATACAGTGCTGCT 58.669 34.615 0.00 0.00 0.00 4.24
862 1303 2.743928 GAGAACCCACGGCTGCTG 60.744 66.667 6.98 6.98 0.00 4.41
881 1322 3.454573 CCCGCGTGTGTAGGGCTA 61.455 66.667 4.92 0.00 38.51 3.93
882 1323 2.792947 CCCGCGTGTGTAGGGCTAT 61.793 63.158 4.92 0.00 38.51 2.97
883 1324 1.143183 CCGCGTGTGTAGGGCTATT 59.857 57.895 4.92 0.00 0.00 1.73
884 1325 1.151777 CCGCGTGTGTAGGGCTATTG 61.152 60.000 4.92 0.00 0.00 1.90
885 1326 0.459585 CGCGTGTGTAGGGCTATTGT 60.460 55.000 0.00 0.00 0.00 2.71
886 1327 1.287425 GCGTGTGTAGGGCTATTGTC 58.713 55.000 0.00 0.00 0.00 3.18
887 1328 1.404986 GCGTGTGTAGGGCTATTGTCA 60.405 52.381 0.00 0.00 0.00 3.58
888 1329 2.933492 GCGTGTGTAGGGCTATTGTCAA 60.933 50.000 0.00 0.00 0.00 3.18
889 1330 2.930040 CGTGTGTAGGGCTATTGTCAAG 59.070 50.000 0.00 0.00 0.00 3.02
890 1331 3.270877 GTGTGTAGGGCTATTGTCAAGG 58.729 50.000 0.00 0.00 0.00 3.61
891 1332 2.289565 GTGTAGGGCTATTGTCAAGGC 58.710 52.381 5.14 5.14 38.73 4.35
892 1333 1.912731 TGTAGGGCTATTGTCAAGGCA 59.087 47.619 13.08 0.00 41.11 4.75
893 1334 2.289565 GTAGGGCTATTGTCAAGGCAC 58.710 52.381 13.08 10.35 41.11 5.01
894 1335 0.034089 AGGGCTATTGTCAAGGCACC 60.034 55.000 10.68 10.40 41.11 5.01
895 1336 1.037579 GGGCTATTGTCAAGGCACCC 61.038 60.000 13.08 7.52 41.11 4.61
896 1337 1.376609 GGCTATTGTCAAGGCACCCG 61.377 60.000 13.08 0.00 39.24 5.28
897 1338 0.676782 GCTATTGTCAAGGCACCCGT 60.677 55.000 8.01 0.00 0.00 5.28
898 1339 1.406341 GCTATTGTCAAGGCACCCGTA 60.406 52.381 8.01 0.00 0.00 4.02
899 1340 2.937873 GCTATTGTCAAGGCACCCGTAA 60.938 50.000 8.01 0.00 0.00 3.18
900 1341 2.279935 ATTGTCAAGGCACCCGTAAA 57.720 45.000 0.00 0.00 0.00 2.01
901 1342 2.054232 TTGTCAAGGCACCCGTAAAA 57.946 45.000 0.00 0.00 0.00 1.52
902 1343 1.310904 TGTCAAGGCACCCGTAAAAC 58.689 50.000 0.00 0.00 0.00 2.43
903 1344 1.134037 TGTCAAGGCACCCGTAAAACT 60.134 47.619 0.00 0.00 0.00 2.66
904 1345 1.951602 GTCAAGGCACCCGTAAAACTT 59.048 47.619 0.00 0.00 0.00 2.66
905 1346 2.031420 GTCAAGGCACCCGTAAAACTTC 60.031 50.000 0.00 0.00 0.00 3.01
906 1347 1.268625 CAAGGCACCCGTAAAACTTCC 59.731 52.381 0.00 0.00 0.00 3.46
907 1348 0.475044 AGGCACCCGTAAAACTTCCA 59.525 50.000 0.00 0.00 0.00 3.53
908 1349 1.133730 AGGCACCCGTAAAACTTCCAA 60.134 47.619 0.00 0.00 0.00 3.53
909 1350 1.001048 GGCACCCGTAAAACTTCCAAC 60.001 52.381 0.00 0.00 0.00 3.77
910 1351 1.951602 GCACCCGTAAAACTTCCAACT 59.048 47.619 0.00 0.00 0.00 3.16
911 1352 2.031420 GCACCCGTAAAACTTCCAACTC 60.031 50.000 0.00 0.00 0.00 3.01
912 1353 3.207778 CACCCGTAAAACTTCCAACTCA 58.792 45.455 0.00 0.00 0.00 3.41
913 1354 3.250040 CACCCGTAAAACTTCCAACTCAG 59.750 47.826 0.00 0.00 0.00 3.35
914 1355 2.225727 CCCGTAAAACTTCCAACTCAGC 59.774 50.000 0.00 0.00 0.00 4.26
915 1356 2.875933 CCGTAAAACTTCCAACTCAGCA 59.124 45.455 0.00 0.00 0.00 4.41
916 1357 3.058914 CCGTAAAACTTCCAACTCAGCAG 60.059 47.826 0.00 0.00 0.00 4.24
917 1358 3.607078 CGTAAAACTTCCAACTCAGCAGC 60.607 47.826 0.00 0.00 0.00 5.25
918 1359 2.057137 AAACTTCCAACTCAGCAGCA 57.943 45.000 0.00 0.00 0.00 4.41
919 1360 1.312815 AACTTCCAACTCAGCAGCAC 58.687 50.000 0.00 0.00 0.00 4.40
920 1361 0.882042 ACTTCCAACTCAGCAGCACG 60.882 55.000 0.00 0.00 0.00 5.34
921 1362 0.601046 CTTCCAACTCAGCAGCACGA 60.601 55.000 0.00 0.00 0.00 4.35
922 1363 0.601046 TTCCAACTCAGCAGCACGAG 60.601 55.000 9.71 9.71 35.30 4.18
923 1364 2.675056 CCAACTCAGCAGCACGAGC 61.675 63.158 10.93 0.00 42.56 5.03
933 1374 4.504132 GCACGAGCGAGGAATCTT 57.496 55.556 0.00 0.00 0.00 2.40
934 1375 2.755929 GCACGAGCGAGGAATCTTT 58.244 52.632 0.00 0.00 0.00 2.52
935 1376 0.371645 GCACGAGCGAGGAATCTTTG 59.628 55.000 0.00 0.00 0.00 2.77
936 1377 1.002366 CACGAGCGAGGAATCTTTGG 58.998 55.000 0.00 0.00 0.00 3.28
948 1389 6.702282 CGAGGAATCTTTGGAGGACTATAAAC 59.298 42.308 0.00 0.00 0.00 2.01
957 1398 3.181478 GGAGGACTATAAACCCACGTCTG 60.181 52.174 0.00 0.00 0.00 3.51
962 1403 4.752146 ACTATAAACCCACGTCTGCTAAC 58.248 43.478 0.00 0.00 0.00 2.34
963 1404 2.460757 TAAACCCACGTCTGCTAACC 57.539 50.000 0.00 0.00 0.00 2.85
964 1405 0.470766 AAACCCACGTCTGCTAACCA 59.529 50.000 0.00 0.00 0.00 3.67
965 1406 0.470766 AACCCACGTCTGCTAACCAA 59.529 50.000 0.00 0.00 0.00 3.67
966 1407 0.034896 ACCCACGTCTGCTAACCAAG 59.965 55.000 0.00 0.00 0.00 3.61
967 1408 0.034896 CCCACGTCTGCTAACCAAGT 59.965 55.000 0.00 0.00 0.00 3.16
968 1409 1.274167 CCCACGTCTGCTAACCAAGTA 59.726 52.381 0.00 0.00 0.00 2.24
992 1433 2.638480 AGGTGCTAGCACTTCAAACA 57.362 45.000 38.82 4.61 45.52 2.83
1029 1470 0.104855 TGTCAGTGTCGCAGCTCTTT 59.895 50.000 0.00 0.00 0.00 2.52
1070 1511 4.404654 CTTGTTCGCTTGGCCGGC 62.405 66.667 21.18 21.18 0.00 6.13
1214 1676 4.154347 CCTGCACTCCTCCGCCTC 62.154 72.222 0.00 0.00 0.00 4.70
1291 1760 1.100510 TTCCGAGTACCTCATCCACG 58.899 55.000 0.00 0.00 0.00 4.94
1353 1822 4.681978 GACACCGGCAGCGACCTT 62.682 66.667 0.00 0.00 0.00 3.50
1449 1918 1.212751 CCGTGATGTCTCGTGCTCA 59.787 57.895 4.14 0.00 0.00 4.26
1554 2026 1.220749 CGGATCCGTCACAATGGGT 59.779 57.895 26.35 0.00 31.84 4.51
1594 2072 2.676121 CATTCAAGGCGCCCCACA 60.676 61.111 26.15 5.47 0.00 4.17
1595 2073 2.117206 ATTCAAGGCGCCCCACAA 59.883 55.556 26.15 11.72 0.00 3.33
1596 2074 2.275380 ATTCAAGGCGCCCCACAAC 61.275 57.895 26.15 0.00 0.00 3.32
1597 2075 2.992817 ATTCAAGGCGCCCCACAACA 62.993 55.000 26.15 0.48 0.00 3.33
1598 2076 3.222855 CAAGGCGCCCCACAACAA 61.223 61.111 26.15 0.00 0.00 2.83
1599 2077 2.912025 AAGGCGCCCCACAACAAG 60.912 61.111 26.15 0.00 0.00 3.16
1600 2078 3.731766 AAGGCGCCCCACAACAAGT 62.732 57.895 26.15 0.00 0.00 3.16
1667 2160 1.963515 GGACAACAAAGGCACCTTCAT 59.036 47.619 1.61 0.00 34.84 2.57
1680 2173 3.489398 GCACCTTCATATCGAACGAGTCT 60.489 47.826 2.94 0.00 0.00 3.24
1745 2238 2.157738 GCTCAAGGTGCACAGATTCTT 58.842 47.619 20.43 9.32 0.00 2.52
1758 2251 3.181451 ACAGATTCTTCCACTGCTTGACA 60.181 43.478 0.00 0.00 35.38 3.58
1764 2257 2.363306 TCCACTGCTTGACAACCATT 57.637 45.000 0.00 0.00 0.00 3.16
1774 2267 3.313012 TGACAACCATTGTAGAGTCCG 57.687 47.619 0.00 0.00 45.52 4.79
1823 2319 3.036084 CAACCTCGAAGCGCACGT 61.036 61.111 21.87 2.52 0.00 4.49
1862 2358 1.302993 CCCCGTTCGTCCCAAACAT 60.303 57.895 0.00 0.00 0.00 2.71
1992 2497 0.249489 GGGGGACAATCATCGACTCG 60.249 60.000 0.00 0.00 0.00 4.18
2013 2518 1.536072 GGCACGAGCATCACGATCTTA 60.536 52.381 7.26 0.00 44.61 2.10
2015 2520 2.797491 CACGAGCATCACGATCTTACA 58.203 47.619 0.00 0.00 33.17 2.41
2023 2528 2.355986 ACGATCTTACAGCGGGCCA 61.356 57.895 4.39 0.00 0.00 5.36
2076 2581 4.530857 GTGCCGCTACCCATCGCT 62.531 66.667 0.00 0.00 0.00 4.93
2139 2650 1.679898 CCCGAAGAAGAAGGTGCCT 59.320 57.895 0.00 0.00 0.00 4.75
2158 2669 2.202570 CCGTGCCGAACCTAGTCG 60.203 66.667 0.00 0.00 40.77 4.18
2286 2821 1.429825 CGAGAGCGACTGGACGATT 59.570 57.895 0.00 0.00 40.82 3.34
2316 2851 1.913778 TCCAGCAACAGAACATGCAT 58.086 45.000 0.00 0.00 44.95 3.96
2319 2854 4.018490 TCCAGCAACAGAACATGCATATT 58.982 39.130 0.00 0.00 44.95 1.28
2337 2872 1.835494 TTGTCTACGACCTGGAGAGG 58.165 55.000 0.00 0.00 46.21 3.69
2343 2878 0.680061 ACGACCTGGAGAGGAACAAC 59.320 55.000 0.00 0.00 42.93 3.32
2387 2926 1.332028 CGACAAGTTGTGACTGAACGC 60.332 52.381 14.57 0.00 35.91 4.84
2392 2931 1.520564 TTGTGACTGAACGCGCACT 60.521 52.632 5.73 0.00 32.69 4.40
2394 2933 1.087202 TGTGACTGAACGCGCACTTT 61.087 50.000 5.73 0.00 32.69 2.66
2399 2938 1.061799 CTGAACGCGCACTTTCATGC 61.062 55.000 5.73 0.00 42.48 4.06
2421 2960 1.650912 CATGTATGCTTCAGCGCCC 59.349 57.895 2.29 0.00 45.83 6.13
2424 2963 2.511373 TATGCTTCAGCGCCCGTG 60.511 61.111 2.29 0.00 45.83 4.94
2425 2964 3.309436 TATGCTTCAGCGCCCGTGT 62.309 57.895 2.29 0.00 45.83 4.49
2426 2965 1.950973 TATGCTTCAGCGCCCGTGTA 61.951 55.000 2.29 0.00 45.83 2.90
2427 2966 3.488090 GCTTCAGCGCCCGTGTAC 61.488 66.667 2.29 0.00 0.00 2.90
2428 2967 2.261671 CTTCAGCGCCCGTGTACT 59.738 61.111 2.29 0.00 0.00 2.73
2429 2968 2.048597 TTCAGCGCCCGTGTACTG 60.049 61.111 2.29 0.00 0.00 2.74
2430 2969 2.765250 CTTCAGCGCCCGTGTACTGT 62.765 60.000 2.29 0.00 0.00 3.55
2431 2970 3.112075 CAGCGCCCGTGTACTGTG 61.112 66.667 2.29 0.00 0.00 3.66
2432 2971 3.612681 AGCGCCCGTGTACTGTGT 61.613 61.111 2.29 0.00 0.00 3.72
2433 2972 2.259204 GCGCCCGTGTACTGTGTA 59.741 61.111 0.00 0.00 0.00 2.90
2434 2973 2.090524 GCGCCCGTGTACTGTGTAC 61.091 63.158 0.00 1.33 0.00 2.90
2435 2974 1.286570 CGCCCGTGTACTGTGTACA 59.713 57.895 6.48 6.48 0.00 2.90
2451 2990 7.069852 CTGTGTACAGTTCTACTACATACGT 57.930 40.000 0.00 0.00 39.09 3.57
2452 2991 8.189709 CTGTGTACAGTTCTACTACATACGTA 57.810 38.462 0.00 0.00 39.09 3.57
2453 2992 7.963981 TGTGTACAGTTCTACTACATACGTAC 58.036 38.462 0.00 0.00 0.00 3.67
2454 2993 7.819415 TGTGTACAGTTCTACTACATACGTACT 59.181 37.037 0.00 0.00 0.00 2.73
2455 2994 8.113062 GTGTACAGTTCTACTACATACGTACTG 58.887 40.741 0.00 1.50 0.00 2.74
2456 2995 6.674694 ACAGTTCTACTACATACGTACTGG 57.325 41.667 11.27 1.84 0.00 4.00
2457 2996 6.176183 ACAGTTCTACTACATACGTACTGGT 58.824 40.000 11.27 7.05 0.00 4.00
2458 2997 6.656693 ACAGTTCTACTACATACGTACTGGTT 59.343 38.462 11.27 0.00 0.00 3.67
2459 2998 7.148340 ACAGTTCTACTACATACGTACTGGTTC 60.148 40.741 11.27 0.00 0.00 3.62
2460 2999 7.065563 CAGTTCTACTACATACGTACTGGTTCT 59.934 40.741 0.00 0.00 0.00 3.01
2461 3000 8.260818 AGTTCTACTACATACGTACTGGTTCTA 58.739 37.037 0.00 0.00 0.00 2.10
2462 3001 8.883731 GTTCTACTACATACGTACTGGTTCTAA 58.116 37.037 0.00 0.00 0.00 2.10
2463 3002 8.654230 TCTACTACATACGTACTGGTTCTAAG 57.346 38.462 0.00 0.00 0.00 2.18
2464 3003 8.260818 TCTACTACATACGTACTGGTTCTAAGT 58.739 37.037 0.00 0.52 0.00 2.24
2465 3004 9.534565 CTACTACATACGTACTGGTTCTAAGTA 57.465 37.037 0.00 1.61 0.00 2.24
2466 3005 8.792830 ACTACATACGTACTGGTTCTAAGTAA 57.207 34.615 0.00 0.00 32.10 2.24
2467 3006 9.231297 ACTACATACGTACTGGTTCTAAGTAAA 57.769 33.333 0.00 0.00 32.10 2.01
2470 3009 9.415544 ACATACGTACTGGTTCTAAGTAAAAAG 57.584 33.333 0.00 0.00 32.10 2.27
2471 3010 9.630098 CATACGTACTGGTTCTAAGTAAAAAGA 57.370 33.333 0.00 0.00 32.10 2.52
2472 3011 9.852091 ATACGTACTGGTTCTAAGTAAAAAGAG 57.148 33.333 0.00 0.00 32.10 2.85
2473 3012 7.720442 ACGTACTGGTTCTAAGTAAAAAGAGT 58.280 34.615 0.00 0.00 32.10 3.24
2474 3013 7.650903 ACGTACTGGTTCTAAGTAAAAAGAGTG 59.349 37.037 0.00 0.00 32.10 3.51
2475 3014 7.650903 CGTACTGGTTCTAAGTAAAAAGAGTGT 59.349 37.037 0.00 0.00 32.10 3.55
2476 3015 8.976471 GTACTGGTTCTAAGTAAAAAGAGTGTC 58.024 37.037 0.00 0.00 32.10 3.67
2477 3016 6.700520 ACTGGTTCTAAGTAAAAAGAGTGTCG 59.299 38.462 0.00 0.00 0.00 4.35
2478 3017 6.576185 TGGTTCTAAGTAAAAAGAGTGTCGT 58.424 36.000 0.00 0.00 0.00 4.34
2479 3018 6.477688 TGGTTCTAAGTAAAAAGAGTGTCGTG 59.522 38.462 0.00 0.00 0.00 4.35
2480 3019 6.073927 GGTTCTAAGTAAAAAGAGTGTCGTGG 60.074 42.308 0.00 0.00 0.00 4.94
2481 3020 6.152932 TCTAAGTAAAAAGAGTGTCGTGGT 57.847 37.500 0.00 0.00 0.00 4.16
2482 3021 6.576185 TCTAAGTAAAAAGAGTGTCGTGGTT 58.424 36.000 0.00 0.00 0.00 3.67
2483 3022 7.043565 TCTAAGTAAAAAGAGTGTCGTGGTTT 58.956 34.615 0.00 0.00 0.00 3.27
2484 3023 6.505044 AAGTAAAAAGAGTGTCGTGGTTTT 57.495 33.333 0.00 0.00 0.00 2.43
2485 3024 5.875930 AGTAAAAAGAGTGTCGTGGTTTTG 58.124 37.500 0.00 0.00 0.00 2.44
2486 3025 4.776795 AAAAAGAGTGTCGTGGTTTTGT 57.223 36.364 0.00 0.00 0.00 2.83
2487 3026 4.351131 AAAAGAGTGTCGTGGTTTTGTC 57.649 40.909 0.00 0.00 0.00 3.18
2488 3027 2.684001 AGAGTGTCGTGGTTTTGTCA 57.316 45.000 0.00 0.00 0.00 3.58
2489 3028 2.277084 AGAGTGTCGTGGTTTTGTCAC 58.723 47.619 0.00 0.00 0.00 3.67
2490 3029 2.004017 GAGTGTCGTGGTTTTGTCACA 58.996 47.619 0.00 0.00 35.03 3.58
2491 3030 2.006888 AGTGTCGTGGTTTTGTCACAG 58.993 47.619 0.00 0.00 35.03 3.66
2492 3031 1.063469 GTGTCGTGGTTTTGTCACAGG 59.937 52.381 0.00 0.00 35.03 4.00
2493 3032 0.028902 GTCGTGGTTTTGTCACAGGC 59.971 55.000 0.00 0.00 35.03 4.85
2494 3033 1.010125 CGTGGTTTTGTCACAGGCG 60.010 57.895 0.00 0.00 35.03 5.52
2495 3034 1.433053 CGTGGTTTTGTCACAGGCGA 61.433 55.000 0.00 0.00 35.03 5.54
2496 3035 0.028902 GTGGTTTTGTCACAGGCGAC 59.971 55.000 0.00 0.00 35.39 5.19
2497 3036 0.107410 TGGTTTTGTCACAGGCGACT 60.107 50.000 0.00 0.00 46.44 4.18
2498 3037 1.139256 TGGTTTTGTCACAGGCGACTA 59.861 47.619 0.00 0.00 40.21 2.59
2499 3038 2.215196 GGTTTTGTCACAGGCGACTAA 58.785 47.619 0.00 0.00 40.21 2.24
2500 3039 2.614983 GGTTTTGTCACAGGCGACTAAA 59.385 45.455 0.00 0.00 40.21 1.85
2501 3040 3.065648 GGTTTTGTCACAGGCGACTAAAA 59.934 43.478 0.00 0.00 40.55 1.52
2502 3041 4.261447 GGTTTTGTCACAGGCGACTAAAAT 60.261 41.667 0.00 0.00 40.55 1.82
2503 3042 5.278604 GTTTTGTCACAGGCGACTAAAATT 58.721 37.500 0.00 0.00 40.55 1.82
2504 3043 5.508200 TTTGTCACAGGCGACTAAAATTT 57.492 34.783 0.00 0.00 40.21 1.82
2505 3044 6.621316 TTTGTCACAGGCGACTAAAATTTA 57.379 33.333 0.00 0.00 40.21 1.40
2506 3045 6.621316 TTGTCACAGGCGACTAAAATTTAA 57.379 33.333 0.00 0.00 40.21 1.52
2507 3046 5.992729 TGTCACAGGCGACTAAAATTTAAC 58.007 37.500 0.00 0.00 40.21 2.01
2508 3047 5.527951 TGTCACAGGCGACTAAAATTTAACA 59.472 36.000 0.00 0.00 40.21 2.41
2509 3048 6.205853 TGTCACAGGCGACTAAAATTTAACAT 59.794 34.615 0.00 0.00 40.21 2.71
2510 3049 6.741358 GTCACAGGCGACTAAAATTTAACATC 59.259 38.462 0.00 0.00 40.21 3.06
2511 3050 6.027749 CACAGGCGACTAAAATTTAACATCC 58.972 40.000 0.00 0.00 40.21 3.51
2512 3051 5.124936 ACAGGCGACTAAAATTTAACATCCC 59.875 40.000 0.00 0.00 40.21 3.85
2513 3052 4.334481 AGGCGACTAAAATTTAACATCCCG 59.666 41.667 0.00 0.00 40.61 5.14
2514 3053 4.033019 GCGACTAAAATTTAACATCCCGC 58.967 43.478 0.00 0.00 0.00 6.13
2515 3054 4.594136 CGACTAAAATTTAACATCCCGCC 58.406 43.478 0.00 0.00 0.00 6.13
2516 3055 4.496840 CGACTAAAATTTAACATCCCGCCC 60.497 45.833 0.00 0.00 0.00 6.13
2517 3056 4.606210 ACTAAAATTTAACATCCCGCCCT 58.394 39.130 0.00 0.00 0.00 5.19
2518 3057 4.643334 ACTAAAATTTAACATCCCGCCCTC 59.357 41.667 0.00 0.00 0.00 4.30
2519 3058 3.382083 AAATTTAACATCCCGCCCTCT 57.618 42.857 0.00 0.00 0.00 3.69
2520 3059 2.640316 ATTTAACATCCCGCCCTCTC 57.360 50.000 0.00 0.00 0.00 3.20
2521 3060 1.580059 TTTAACATCCCGCCCTCTCT 58.420 50.000 0.00 0.00 0.00 3.10
2522 3061 0.830648 TTAACATCCCGCCCTCTCTG 59.169 55.000 0.00 0.00 0.00 3.35
2523 3062 0.325296 TAACATCCCGCCCTCTCTGT 60.325 55.000 0.00 0.00 0.00 3.41
2524 3063 0.325296 AACATCCCGCCCTCTCTGTA 60.325 55.000 0.00 0.00 0.00 2.74
2525 3064 0.105453 ACATCCCGCCCTCTCTGTAT 60.105 55.000 0.00 0.00 0.00 2.29
2526 3065 1.147191 ACATCCCGCCCTCTCTGTATA 59.853 52.381 0.00 0.00 0.00 1.47
2527 3066 1.821753 CATCCCGCCCTCTCTGTATAG 59.178 57.143 0.00 0.00 0.00 1.31
2528 3067 0.851469 TCCCGCCCTCTCTGTATAGT 59.149 55.000 0.00 0.00 0.00 2.12
2529 3068 0.962489 CCCGCCCTCTCTGTATAGTG 59.038 60.000 0.00 0.00 0.00 2.74
2530 3069 0.962489 CCGCCCTCTCTGTATAGTGG 59.038 60.000 0.00 0.00 0.00 4.00
2531 3070 1.693627 CGCCCTCTCTGTATAGTGGT 58.306 55.000 0.00 0.00 0.00 4.16
2532 3071 2.032620 CGCCCTCTCTGTATAGTGGTT 58.967 52.381 0.00 0.00 0.00 3.67
2533 3072 2.431057 CGCCCTCTCTGTATAGTGGTTT 59.569 50.000 0.00 0.00 0.00 3.27
2534 3073 3.118738 CGCCCTCTCTGTATAGTGGTTTT 60.119 47.826 0.00 0.00 0.00 2.43
2893 3446 1.719378 AGGAGTTCTTGAGGAGGAGGA 59.281 52.381 0.00 0.00 0.00 3.71
2894 3447 2.107366 GGAGTTCTTGAGGAGGAGGAG 58.893 57.143 0.00 0.00 0.00 3.69
2895 3448 2.107366 GAGTTCTTGAGGAGGAGGAGG 58.893 57.143 0.00 0.00 0.00 4.30
2938 3497 1.392534 GAGGAGGAGGAGGTTGGGA 59.607 63.158 0.00 0.00 0.00 4.37
3016 3575 5.417894 GGAGATGGGGAAAACGAAATTTAGT 59.582 40.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.629065 CACGAAACTTAAAGCGCTCTTAG 58.371 43.478 12.06 10.78 31.02 2.18
1 2 3.120786 GCACGAAACTTAAAGCGCTCTTA 60.121 43.478 12.06 9.16 31.02 2.10
2 3 2.349532 GCACGAAACTTAAAGCGCTCTT 60.350 45.455 12.06 10.24 0.00 2.85
7 8 1.853230 CTCGCACGAAACTTAAAGCG 58.147 50.000 0.00 0.00 45.79 4.68
19 20 2.010817 GCAAAAACTGGCTCGCACG 61.011 57.895 0.00 0.00 0.00 5.34
24 25 0.936297 CTGCACGCAAAAACTGGCTC 60.936 55.000 0.00 0.00 0.00 4.70
26 27 1.065600 TCTGCACGCAAAAACTGGC 59.934 52.632 0.00 0.00 0.00 4.85
30 31 0.594796 CCTGGTCTGCACGCAAAAAC 60.595 55.000 0.00 0.00 0.00 2.43
34 35 4.560743 TGCCTGGTCTGCACGCAA 62.561 61.111 0.00 0.00 32.85 4.85
36 37 4.030452 GTTGCCTGGTCTGCACGC 62.030 66.667 0.00 0.00 38.72 5.34
44 45 2.445682 TAGTTGTTTGGTTGCCTGGT 57.554 45.000 0.00 0.00 0.00 4.00
57 58 3.118186 TGGCGGGCTAAATACATAGTTGT 60.118 43.478 2.38 0.00 39.98 3.32
64 65 1.138266 GACTCTGGCGGGCTAAATACA 59.862 52.381 2.38 0.00 0.00 2.29
65 66 1.413077 AGACTCTGGCGGGCTAAATAC 59.587 52.381 2.38 0.00 0.00 1.89
68 69 1.596934 CAGACTCTGGCGGGCTAAA 59.403 57.895 2.38 0.00 0.00 1.85
83 84 1.804151 GTTACATCAAGCGCAACCAGA 59.196 47.619 11.47 0.00 0.00 3.86
91 92 3.181524 CGTTTGGTAGGTTACATCAAGCG 60.182 47.826 0.00 0.00 39.69 4.68
100 101 2.747396 ATGACGCGTTTGGTAGGTTA 57.253 45.000 15.53 0.00 0.00 2.85
102 103 1.886886 AAATGACGCGTTTGGTAGGT 58.113 45.000 15.53 0.00 0.00 3.08
107 108 1.446465 CGTTCAAAATGACGCGTTTGG 59.554 47.619 15.53 0.76 35.79 3.28
122 123 0.036105 ATGGCAGAGCATCACGTTCA 60.036 50.000 0.00 0.00 37.82 3.18
124 125 1.086067 CGATGGCAGAGCATCACGTT 61.086 55.000 0.00 0.00 37.82 3.99
126 127 1.086067 AACGATGGCAGAGCATCACG 61.086 55.000 0.00 0.00 37.82 4.35
127 128 0.654683 GAACGATGGCAGAGCATCAC 59.345 55.000 0.00 0.00 37.82 3.06
139 143 1.135083 AGACAAGCGGGTAGAACGATG 60.135 52.381 0.00 0.00 0.00 3.84
149 154 0.875059 GAAACCAAGAGACAAGCGGG 59.125 55.000 0.00 0.00 0.00 6.13
150 155 0.875059 GGAAACCAAGAGACAAGCGG 59.125 55.000 0.00 0.00 0.00 5.52
151 156 1.884235 AGGAAACCAAGAGACAAGCG 58.116 50.000 0.00 0.00 0.00 4.68
160 165 2.740447 GCACCGTACTTAGGAAACCAAG 59.260 50.000 0.00 0.00 0.00 3.61
161 166 2.104451 TGCACCGTACTTAGGAAACCAA 59.896 45.455 0.00 0.00 0.00 3.67
163 168 2.460757 TGCACCGTACTTAGGAAACC 57.539 50.000 0.00 0.00 0.00 3.27
168 176 6.281405 AGAAATAAGATGCACCGTACTTAGG 58.719 40.000 0.00 0.00 0.00 2.69
173 181 6.040878 ACAGTAGAAATAAGATGCACCGTAC 58.959 40.000 0.00 0.00 0.00 3.67
177 185 7.928706 ACATCTACAGTAGAAATAAGATGCACC 59.071 37.037 14.46 0.00 42.51 5.01
178 186 8.879342 ACATCTACAGTAGAAATAAGATGCAC 57.121 34.615 14.46 0.00 42.51 4.57
188 196 9.639601 CAACTGACATAACATCTACAGTAGAAA 57.360 33.333 14.46 1.64 38.50 2.52
191 199 9.809096 AATCAACTGACATAACATCTACAGTAG 57.191 33.333 0.47 0.47 37.57 2.57
194 202 8.707938 TCAATCAACTGACATAACATCTACAG 57.292 34.615 0.00 0.00 0.00 2.74
196 204 8.391106 GGTTCAATCAACTGACATAACATCTAC 58.609 37.037 0.00 0.00 35.06 2.59
221 229 1.270147 GCGTAATAGGGTGTGGCTAGG 60.270 57.143 0.00 0.00 0.00 3.02
232 240 7.758495 ACATTAACAAGAAAAGGCGTAATAGG 58.242 34.615 0.00 0.00 0.00 2.57
320 328 9.734984 ACCTATTACTAAAATACAAAGCAGTGT 57.265 29.630 0.00 0.00 35.43 3.55
345 353 7.792374 TTAGCAGATCAATCAACCAATCTAC 57.208 36.000 0.00 0.00 0.00 2.59
348 356 8.388484 AGTATTAGCAGATCAATCAACCAATC 57.612 34.615 0.00 0.00 0.00 2.67
349 357 9.851686 TTAGTATTAGCAGATCAATCAACCAAT 57.148 29.630 0.00 0.00 0.00 3.16
351 359 8.486210 AGTTAGTATTAGCAGATCAATCAACCA 58.514 33.333 0.00 0.00 0.00 3.67
353 361 9.534565 TCAGTTAGTATTAGCAGATCAATCAAC 57.465 33.333 0.00 0.00 0.00 3.18
380 388 7.888424 TGCTTAATGTATGTATAGCGGAACTA 58.112 34.615 0.00 0.00 34.64 2.24
381 389 6.755206 TGCTTAATGTATGTATAGCGGAACT 58.245 36.000 0.00 0.00 0.00 3.01
385 393 7.652300 TCTTTGCTTAATGTATGTATAGCGG 57.348 36.000 0.00 0.00 0.00 5.52
431 439 3.104519 TCAAACGGAGGGAGTATACCA 57.895 47.619 0.00 0.00 0.00 3.25
432 440 4.476628 TTTCAAACGGAGGGAGTATACC 57.523 45.455 0.00 0.00 0.00 2.73
433 441 7.767659 ACTTATTTTCAAACGGAGGGAGTATAC 59.232 37.037 0.00 0.00 0.00 1.47
434 442 7.767198 CACTTATTTTCAAACGGAGGGAGTATA 59.233 37.037 0.00 0.00 0.00 1.47
440 448 4.760204 AGACACTTATTTTCAAACGGAGGG 59.240 41.667 0.00 0.00 0.00 4.30
486 497 9.868277 CCCAAAATAAATGTTGCTGATACTTTA 57.132 29.630 0.00 0.00 0.00 1.85
494 505 7.999679 TCTCTATCCCAAAATAAATGTTGCTG 58.000 34.615 0.00 0.00 0.00 4.41
514 525 9.132923 ACCGTTGATTATTTCATACTCTCTCTA 57.867 33.333 0.00 0.00 33.34 2.43
518 529 7.306051 CGACACCGTTGATTATTTCATACTCTC 60.306 40.741 0.00 0.00 33.34 3.20
522 533 6.578020 TCGACACCGTTGATTATTTCATAC 57.422 37.500 0.00 0.00 37.05 2.39
526 537 3.541516 CGCTCGACACCGTTGATTATTTC 60.542 47.826 0.00 0.00 37.05 2.17
556 567 4.477975 GCTCTCGACCGTCCACCG 62.478 72.222 0.00 0.00 0.00 4.94
588 599 0.823769 AGTCGCTATCCATCAGCCGA 60.824 55.000 0.00 0.00 35.53 5.54
589 600 0.032678 AAGTCGCTATCCATCAGCCG 59.967 55.000 0.00 0.00 35.53 5.52
591 602 2.799412 CTCAAAGTCGCTATCCATCAGC 59.201 50.000 0.00 0.00 35.61 4.26
595 606 2.555199 GCACTCAAAGTCGCTATCCAT 58.445 47.619 0.00 0.00 0.00 3.41
596 607 1.735700 CGCACTCAAAGTCGCTATCCA 60.736 52.381 0.00 0.00 0.00 3.41
597 608 0.924090 CGCACTCAAAGTCGCTATCC 59.076 55.000 0.00 0.00 0.00 2.59
598 609 0.299003 GCGCACTCAAAGTCGCTATC 59.701 55.000 0.30 0.00 39.68 2.08
599 610 0.108615 AGCGCACTCAAAGTCGCTAT 60.109 50.000 11.47 3.67 45.70 2.97
600 611 1.008875 CAGCGCACTCAAAGTCGCTA 61.009 55.000 11.47 0.00 45.75 4.26
602 613 2.171940 CAGCGCACTCAAAGTCGC 59.828 61.111 11.47 12.69 41.53 5.19
603 614 1.904852 ATGCAGCGCACTCAAAGTCG 61.905 55.000 11.47 0.00 43.04 4.18
604 615 0.453950 CATGCAGCGCACTCAAAGTC 60.454 55.000 11.47 0.00 43.04 3.01
606 617 0.453950 GTCATGCAGCGCACTCAAAG 60.454 55.000 11.47 1.88 43.04 2.77
622 1063 0.614812 TGCTCATGGCTGCTAAGTCA 59.385 50.000 0.00 0.00 43.64 3.41
629 1070 1.679680 ACAACATATGCTCATGGCTGC 59.320 47.619 1.58 0.00 42.39 5.25
630 1071 4.357142 GAAACAACATATGCTCATGGCTG 58.643 43.478 1.58 1.44 42.39 4.85
631 1072 3.065786 CGAAACAACATATGCTCATGGCT 59.934 43.478 1.58 0.00 42.39 4.75
632 1073 3.365832 CGAAACAACATATGCTCATGGC 58.634 45.455 1.58 0.00 42.22 4.40
633 1074 3.365832 GCGAAACAACATATGCTCATGG 58.634 45.455 1.58 0.00 0.00 3.66
634 1075 3.181498 TGGCGAAACAACATATGCTCATG 60.181 43.478 1.58 0.00 0.00 3.07
635 1076 3.016031 TGGCGAAACAACATATGCTCAT 58.984 40.909 1.58 0.00 0.00 2.90
636 1077 2.431454 TGGCGAAACAACATATGCTCA 58.569 42.857 1.58 0.00 0.00 4.26
637 1078 3.485947 TTGGCGAAACAACATATGCTC 57.514 42.857 1.58 0.00 0.00 4.26
638 1079 3.932545 TTTGGCGAAACAACATATGCT 57.067 38.095 1.58 0.00 0.00 3.79
639 1080 4.981389 TTTTTGGCGAAACAACATATGC 57.019 36.364 1.58 0.00 0.00 3.14
668 1109 8.662894 CGTCTACGTCGAACATATGCTTATGTT 61.663 40.741 28.48 28.48 45.25 2.71
669 1110 7.266138 CGTCTACGTCGAACATATGCTTATGT 61.266 42.308 17.17 17.17 41.18 2.29
670 1111 5.058128 CGTCTACGTCGAACATATGCTTATG 59.942 44.000 15.98 15.98 36.95 1.90
671 1112 5.145059 CGTCTACGTCGAACATATGCTTAT 58.855 41.667 1.58 0.00 34.11 1.73
672 1113 4.521010 CGTCTACGTCGAACATATGCTTA 58.479 43.478 1.58 0.00 34.11 3.09
673 1114 3.360533 CGTCTACGTCGAACATATGCTT 58.639 45.455 1.58 0.00 34.11 3.91
674 1115 2.983166 CGTCTACGTCGAACATATGCT 58.017 47.619 1.58 0.00 34.11 3.79
694 1135 2.434134 CGACGCGAGCAAGTGGTAC 61.434 63.158 15.93 0.00 0.00 3.34
706 1147 2.654912 GACTCCAACCAACGACGCG 61.655 63.158 3.53 3.53 0.00 6.01
731 1172 4.094830 TCTCTGGATGCATGCATACATT 57.905 40.909 38.96 18.09 45.22 2.71
759 1200 5.124457 CCAGCAGCACTGTATATGAGTTTTT 59.876 40.000 0.00 0.00 45.68 1.94
760 1201 4.637534 CCAGCAGCACTGTATATGAGTTTT 59.362 41.667 0.00 0.00 45.68 2.43
761 1202 4.080919 TCCAGCAGCACTGTATATGAGTTT 60.081 41.667 0.00 0.00 45.68 2.66
762 1203 3.452264 TCCAGCAGCACTGTATATGAGTT 59.548 43.478 0.00 0.00 45.68 3.01
763 1204 3.033909 TCCAGCAGCACTGTATATGAGT 58.966 45.455 0.00 0.00 45.68 3.41
764 1205 3.740631 TCCAGCAGCACTGTATATGAG 57.259 47.619 0.00 0.00 45.68 2.90
765 1206 3.742327 GCTTCCAGCAGCACTGTATATGA 60.742 47.826 0.00 0.00 45.68 2.15
766 1207 2.547211 GCTTCCAGCAGCACTGTATATG 59.453 50.000 0.00 0.00 45.68 1.78
767 1208 2.843701 GCTTCCAGCAGCACTGTATAT 58.156 47.619 0.00 0.00 45.68 0.86
768 1209 2.315925 GCTTCCAGCAGCACTGTATA 57.684 50.000 0.00 0.00 45.68 1.47
769 1210 3.165606 GCTTCCAGCAGCACTGTAT 57.834 52.632 0.00 0.00 45.68 2.29
770 1211 4.701663 GCTTCCAGCAGCACTGTA 57.298 55.556 0.00 0.00 45.68 2.74
779 1220 1.537135 GGTCTCGTCTATGCTTCCAGC 60.537 57.143 0.00 0.00 42.82 4.85
780 1221 1.268794 CGGTCTCGTCTATGCTTCCAG 60.269 57.143 0.00 0.00 0.00 3.86
781 1222 0.738975 CGGTCTCGTCTATGCTTCCA 59.261 55.000 0.00 0.00 0.00 3.53
822 1263 2.964978 GCACACAAGCATCACCCC 59.035 61.111 0.00 0.00 0.00 4.95
824 1265 0.179181 CATCGCACACAAGCATCACC 60.179 55.000 0.00 0.00 0.00 4.02
830 1271 1.900585 TTCTCGCATCGCACACAAGC 61.901 55.000 0.00 0.00 0.00 4.01
831 1272 0.179240 GTTCTCGCATCGCACACAAG 60.179 55.000 0.00 0.00 0.00 3.16
868 1309 2.665649 TGACAATAGCCCTACACACG 57.334 50.000 0.00 0.00 0.00 4.49
876 1317 1.037579 GGGTGCCTTGACAATAGCCC 61.038 60.000 7.63 7.99 0.00 5.19
878 1319 0.676782 ACGGGTGCCTTGACAATAGC 60.677 55.000 3.91 3.91 0.00 2.97
879 1320 2.684001 TACGGGTGCCTTGACAATAG 57.316 50.000 0.00 0.00 0.00 1.73
880 1321 3.420300 TTTACGGGTGCCTTGACAATA 57.580 42.857 0.00 0.00 0.00 1.90
881 1322 2.279935 TTTACGGGTGCCTTGACAAT 57.720 45.000 0.00 0.00 0.00 2.71
882 1323 1.677052 GTTTTACGGGTGCCTTGACAA 59.323 47.619 0.00 0.00 0.00 3.18
883 1324 1.134037 AGTTTTACGGGTGCCTTGACA 60.134 47.619 0.00 0.00 0.00 3.58
884 1325 1.601166 AGTTTTACGGGTGCCTTGAC 58.399 50.000 0.00 0.00 0.00 3.18
885 1326 2.223745 GAAGTTTTACGGGTGCCTTGA 58.776 47.619 0.00 0.00 0.00 3.02
886 1327 1.268625 GGAAGTTTTACGGGTGCCTTG 59.731 52.381 0.00 0.00 0.00 3.61
887 1328 1.133730 TGGAAGTTTTACGGGTGCCTT 60.134 47.619 0.00 0.00 0.00 4.35
888 1329 0.475044 TGGAAGTTTTACGGGTGCCT 59.525 50.000 0.00 0.00 0.00 4.75
889 1330 1.001048 GTTGGAAGTTTTACGGGTGCC 60.001 52.381 0.00 0.00 0.00 5.01
890 1331 1.951602 AGTTGGAAGTTTTACGGGTGC 59.048 47.619 0.00 0.00 0.00 5.01
891 1332 3.207778 TGAGTTGGAAGTTTTACGGGTG 58.792 45.455 0.00 0.00 0.00 4.61
892 1333 3.473625 CTGAGTTGGAAGTTTTACGGGT 58.526 45.455 0.00 0.00 0.00 5.28
893 1334 2.225727 GCTGAGTTGGAAGTTTTACGGG 59.774 50.000 0.00 0.00 0.00 5.28
894 1335 2.875933 TGCTGAGTTGGAAGTTTTACGG 59.124 45.455 0.00 0.00 0.00 4.02
895 1336 3.607078 GCTGCTGAGTTGGAAGTTTTACG 60.607 47.826 0.00 0.00 0.00 3.18
896 1337 3.315191 TGCTGCTGAGTTGGAAGTTTTAC 59.685 43.478 0.00 0.00 0.00 2.01
897 1338 3.315191 GTGCTGCTGAGTTGGAAGTTTTA 59.685 43.478 0.00 0.00 0.00 1.52
898 1339 2.099756 GTGCTGCTGAGTTGGAAGTTTT 59.900 45.455 0.00 0.00 0.00 2.43
899 1340 1.678101 GTGCTGCTGAGTTGGAAGTTT 59.322 47.619 0.00 0.00 0.00 2.66
900 1341 1.312815 GTGCTGCTGAGTTGGAAGTT 58.687 50.000 0.00 0.00 0.00 2.66
901 1342 0.882042 CGTGCTGCTGAGTTGGAAGT 60.882 55.000 0.00 0.00 0.00 3.01
902 1343 0.601046 TCGTGCTGCTGAGTTGGAAG 60.601 55.000 0.00 0.00 0.00 3.46
903 1344 0.601046 CTCGTGCTGCTGAGTTGGAA 60.601 55.000 12.38 0.00 0.00 3.53
904 1345 1.005748 CTCGTGCTGCTGAGTTGGA 60.006 57.895 12.38 0.00 0.00 3.53
905 1346 2.675056 GCTCGTGCTGCTGAGTTGG 61.675 63.158 18.80 1.39 34.67 3.77
906 1347 2.858868 GCTCGTGCTGCTGAGTTG 59.141 61.111 18.80 1.68 34.67 3.16
907 1348 2.736236 CGCTCGTGCTGCTGAGTT 60.736 61.111 18.80 0.00 36.97 3.01
908 1349 3.623486 CTCGCTCGTGCTGCTGAGT 62.623 63.158 18.80 0.00 36.97 3.41
909 1350 2.879933 CTCGCTCGTGCTGCTGAG 60.880 66.667 15.17 15.17 36.97 3.35
910 1351 4.426112 CCTCGCTCGTGCTGCTGA 62.426 66.667 7.97 0.00 36.97 4.26
911 1352 3.921767 TTCCTCGCTCGTGCTGCTG 62.922 63.158 7.97 0.00 36.97 4.41
912 1353 2.897641 GATTCCTCGCTCGTGCTGCT 62.898 60.000 7.97 0.00 36.97 4.24
913 1354 2.510238 ATTCCTCGCTCGTGCTGC 60.510 61.111 7.97 0.00 36.97 5.25
914 1355 0.459237 AAGATTCCTCGCTCGTGCTG 60.459 55.000 7.97 1.69 36.97 4.41
915 1356 0.247736 AAAGATTCCTCGCTCGTGCT 59.752 50.000 7.97 0.00 36.97 4.40
916 1357 0.371645 CAAAGATTCCTCGCTCGTGC 59.628 55.000 0.00 0.00 0.00 5.34
917 1358 1.002366 CCAAAGATTCCTCGCTCGTG 58.998 55.000 0.00 0.00 0.00 4.35
918 1359 0.895530 TCCAAAGATTCCTCGCTCGT 59.104 50.000 0.00 0.00 0.00 4.18
919 1360 1.565305 CTCCAAAGATTCCTCGCTCG 58.435 55.000 0.00 0.00 0.00 5.03
920 1361 1.482593 TCCTCCAAAGATTCCTCGCTC 59.517 52.381 0.00 0.00 0.00 5.03
921 1362 1.208293 GTCCTCCAAAGATTCCTCGCT 59.792 52.381 0.00 0.00 0.00 4.93
922 1363 1.208293 AGTCCTCCAAAGATTCCTCGC 59.792 52.381 0.00 0.00 0.00 5.03
923 1364 4.946478 ATAGTCCTCCAAAGATTCCTCG 57.054 45.455 0.00 0.00 0.00 4.63
924 1365 6.993308 GGTTTATAGTCCTCCAAAGATTCCTC 59.007 42.308 0.00 0.00 0.00 3.71
925 1366 6.126449 GGGTTTATAGTCCTCCAAAGATTCCT 60.126 42.308 0.00 0.00 0.00 3.36
926 1367 6.062749 GGGTTTATAGTCCTCCAAAGATTCC 58.937 44.000 0.00 0.00 0.00 3.01
927 1368 6.542735 GTGGGTTTATAGTCCTCCAAAGATTC 59.457 42.308 0.00 0.00 0.00 2.52
928 1369 6.424032 GTGGGTTTATAGTCCTCCAAAGATT 58.576 40.000 0.00 0.00 0.00 2.40
929 1370 5.396436 CGTGGGTTTATAGTCCTCCAAAGAT 60.396 44.000 0.00 0.00 0.00 2.40
930 1371 4.081309 CGTGGGTTTATAGTCCTCCAAAGA 60.081 45.833 0.00 0.00 0.00 2.52
931 1372 4.189231 CGTGGGTTTATAGTCCTCCAAAG 58.811 47.826 0.00 0.00 0.00 2.77
932 1373 3.583966 ACGTGGGTTTATAGTCCTCCAAA 59.416 43.478 0.00 0.00 0.00 3.28
933 1374 3.175594 ACGTGGGTTTATAGTCCTCCAA 58.824 45.455 0.00 0.00 0.00 3.53
934 1375 2.762327 GACGTGGGTTTATAGTCCTCCA 59.238 50.000 0.00 0.00 0.00 3.86
935 1376 3.029570 AGACGTGGGTTTATAGTCCTCC 58.970 50.000 0.00 0.00 32.70 4.30
936 1377 3.737355 GCAGACGTGGGTTTATAGTCCTC 60.737 52.174 0.00 0.00 32.70 3.71
948 1389 0.034896 ACTTGGTTAGCAGACGTGGG 59.965 55.000 0.00 0.00 0.00 4.61
957 1398 3.447944 AGCACCTACTCTACTTGGTTAGC 59.552 47.826 0.00 0.00 0.00 3.09
962 1403 3.024547 TGCTAGCACCTACTCTACTTGG 58.975 50.000 14.93 0.00 0.00 3.61
963 1404 4.035278 GTGCTAGCACCTACTCTACTTG 57.965 50.000 33.32 0.00 40.79 3.16
992 1433 2.880890 GACAAGACCTTCATGCTGTTGT 59.119 45.455 0.00 0.00 0.00 3.32
1029 1470 1.971357 GTGAGGAAGAGAACACAGGGA 59.029 52.381 0.00 0.00 34.05 4.20
1263 1725 1.743958 AGGTACTCGGAACTGATGTCG 59.256 52.381 0.00 0.00 0.00 4.35
1449 1918 3.753434 CGCGTGCAGAGAGGGTCT 61.753 66.667 0.00 0.00 35.00 3.85
1548 2020 2.361438 GTCCTCGACGATCTTACCCATT 59.639 50.000 0.00 0.00 0.00 3.16
1554 2026 3.754850 TGAAAGTGTCCTCGACGATCTTA 59.245 43.478 0.00 0.00 34.95 2.10
1594 2072 3.276846 GACCGTGCCGCACTTGTT 61.277 61.111 20.87 2.59 31.34 2.83
1615 2108 1.397390 AAGTGGAGGTTCGACACGGT 61.397 55.000 0.00 0.00 39.95 4.83
1621 2114 0.250295 CAGCCAAAGTGGAGGTTCGA 60.250 55.000 0.00 0.00 40.96 3.71
1667 2160 1.002792 CGATGCCAGACTCGTTCGATA 60.003 52.381 0.00 0.00 0.00 2.92
1745 2238 2.363306 AATGGTTGTCAAGCAGTGGA 57.637 45.000 21.04 0.00 42.84 4.02
1758 2251 1.553704 GTCCCGGACTCTACAATGGTT 59.446 52.381 10.59 0.00 0.00 3.67
1764 2257 1.681327 GCTGGTCCCGGACTCTACA 60.681 63.158 17.27 5.86 32.47 2.74
1862 2358 3.596066 GAGCTGAGCGCACTCCCAA 62.596 63.158 11.47 0.00 42.74 4.12
1867 2363 1.587043 TAGAACGAGCTGAGCGCACT 61.587 55.000 11.47 6.85 42.61 4.40
1974 2479 0.249489 CCGAGTCGATGATTGTCCCC 60.249 60.000 15.64 0.00 0.00 4.81
1980 2485 1.226974 CGTGCCCGAGTCGATGATT 60.227 57.895 15.64 0.00 35.63 2.57
1992 2497 2.202932 ATCGTGATGCTCGTGCCC 60.203 61.111 7.05 0.00 38.71 5.36
2015 2520 3.976701 CTTCGGAACATGGCCCGCT 62.977 63.158 19.28 0.00 44.96 5.52
2041 2546 1.800315 CCTACGACACGAACGCCTG 60.800 63.158 0.00 0.00 0.00 4.85
2056 2561 2.495409 CGATGGGTAGCGGCACCTA 61.495 63.158 17.14 13.41 38.73 3.08
2151 2662 1.038130 CCTCCAGGTGGACGACTAGG 61.038 65.000 0.55 0.00 39.78 3.02
2190 2701 1.592400 CCAGCACGTAGTTCTCCCGA 61.592 60.000 0.00 0.00 41.61 5.14
2286 2821 3.263170 TCTGTTGCTGGAAGTTGCCTATA 59.737 43.478 0.00 0.00 35.30 1.31
2304 2839 5.660460 TCGTAGACAATATGCATGTTCTGT 58.340 37.500 10.16 4.85 0.00 3.41
2337 2872 0.452784 GCGCGAAGACCATGTTGTTC 60.453 55.000 12.10 0.00 0.00 3.18
2374 2909 1.087202 AAGTGCGCGTTCAGTCACAA 61.087 50.000 8.43 0.00 32.25 3.33
2403 2942 1.650912 GGGCGCTGAAGCATACATG 59.349 57.895 7.64 0.00 42.21 3.21
2412 2951 2.048597 CAGTACACGGGCGCTGAA 60.049 61.111 7.64 0.00 0.00 3.02
2416 2955 2.090524 GTACACAGTACACGGGCGC 61.091 63.158 0.00 0.00 0.00 6.53
2428 2967 7.819415 AGTACGTATGTAGTAGAACTGTACACA 59.181 37.037 0.00 0.00 32.39 3.72
2429 2968 8.113062 CAGTACGTATGTAGTAGAACTGTACAC 58.887 40.741 0.00 0.00 32.89 2.90
2430 2969 7.278646 CCAGTACGTATGTAGTAGAACTGTACA 59.721 40.741 0.00 0.00 32.89 2.90
2431 2970 7.278868 ACCAGTACGTATGTAGTAGAACTGTAC 59.721 40.741 0.00 0.00 32.89 2.90
2432 2971 7.331026 ACCAGTACGTATGTAGTAGAACTGTA 58.669 38.462 0.00 0.00 32.89 2.74
2433 2972 6.176183 ACCAGTACGTATGTAGTAGAACTGT 58.824 40.000 0.00 0.38 32.89 3.55
2434 2973 6.674694 ACCAGTACGTATGTAGTAGAACTG 57.325 41.667 0.00 4.58 32.89 3.16
2435 2974 7.108847 AGAACCAGTACGTATGTAGTAGAACT 58.891 38.462 0.00 0.00 32.89 3.01
2436 2975 7.313951 AGAACCAGTACGTATGTAGTAGAAC 57.686 40.000 0.00 0.00 32.89 3.01
2437 2976 9.102757 CTTAGAACCAGTACGTATGTAGTAGAA 57.897 37.037 0.00 0.00 32.89 2.10
2438 2977 8.260818 ACTTAGAACCAGTACGTATGTAGTAGA 58.739 37.037 0.00 0.00 32.89 2.59
2439 2978 8.430801 ACTTAGAACCAGTACGTATGTAGTAG 57.569 38.462 0.00 0.00 32.89 2.57
2440 2979 9.884636 TTACTTAGAACCAGTACGTATGTAGTA 57.115 33.333 0.00 0.00 32.89 1.82
2441 2980 8.792830 TTACTTAGAACCAGTACGTATGTAGT 57.207 34.615 0.00 0.00 34.50 2.73
2444 2983 9.415544 CTTTTTACTTAGAACCAGTACGTATGT 57.584 33.333 0.00 0.00 0.00 2.29
2445 2984 9.630098 TCTTTTTACTTAGAACCAGTACGTATG 57.370 33.333 0.00 0.00 0.00 2.39
2446 2985 9.852091 CTCTTTTTACTTAGAACCAGTACGTAT 57.148 33.333 0.00 0.00 0.00 3.06
2447 2986 8.850156 ACTCTTTTTACTTAGAACCAGTACGTA 58.150 33.333 0.00 0.00 0.00 3.57
2448 2987 7.650903 CACTCTTTTTACTTAGAACCAGTACGT 59.349 37.037 0.00 0.00 0.00 3.57
2449 2988 7.650903 ACACTCTTTTTACTTAGAACCAGTACG 59.349 37.037 0.00 0.00 0.00 3.67
2450 2989 8.883954 ACACTCTTTTTACTTAGAACCAGTAC 57.116 34.615 0.00 0.00 0.00 2.73
2451 2990 7.864379 CGACACTCTTTTTACTTAGAACCAGTA 59.136 37.037 0.00 0.00 0.00 2.74
2452 2991 6.700520 CGACACTCTTTTTACTTAGAACCAGT 59.299 38.462 0.00 0.00 0.00 4.00
2453 2992 6.700520 ACGACACTCTTTTTACTTAGAACCAG 59.299 38.462 0.00 0.00 0.00 4.00
2454 2993 6.477688 CACGACACTCTTTTTACTTAGAACCA 59.522 38.462 0.00 0.00 0.00 3.67
2455 2994 6.073927 CCACGACACTCTTTTTACTTAGAACC 60.074 42.308 0.00 0.00 0.00 3.62
2456 2995 6.478016 ACCACGACACTCTTTTTACTTAGAAC 59.522 38.462 0.00 0.00 0.00 3.01
2457 2996 6.576185 ACCACGACACTCTTTTTACTTAGAA 58.424 36.000 0.00 0.00 0.00 2.10
2458 2997 6.152932 ACCACGACACTCTTTTTACTTAGA 57.847 37.500 0.00 0.00 0.00 2.10
2459 2998 6.839820 AACCACGACACTCTTTTTACTTAG 57.160 37.500 0.00 0.00 0.00 2.18
2460 2999 7.119553 ACAAAACCACGACACTCTTTTTACTTA 59.880 33.333 0.00 0.00 0.00 2.24
2461 3000 6.072342 ACAAAACCACGACACTCTTTTTACTT 60.072 34.615 0.00 0.00 0.00 2.24
2462 3001 5.413523 ACAAAACCACGACACTCTTTTTACT 59.586 36.000 0.00 0.00 0.00 2.24
2463 3002 5.633927 ACAAAACCACGACACTCTTTTTAC 58.366 37.500 0.00 0.00 0.00 2.01
2464 3003 5.411977 TGACAAAACCACGACACTCTTTTTA 59.588 36.000 0.00 0.00 0.00 1.52
2465 3004 4.216687 TGACAAAACCACGACACTCTTTTT 59.783 37.500 0.00 0.00 0.00 1.94
2466 3005 3.754323 TGACAAAACCACGACACTCTTTT 59.246 39.130 0.00 0.00 0.00 2.27
2467 3006 3.126343 GTGACAAAACCACGACACTCTTT 59.874 43.478 0.00 0.00 0.00 2.52
2468 3007 2.676342 GTGACAAAACCACGACACTCTT 59.324 45.455 0.00 0.00 0.00 2.85
2469 3008 2.277084 GTGACAAAACCACGACACTCT 58.723 47.619 0.00 0.00 0.00 3.24
2470 3009 2.004017 TGTGACAAAACCACGACACTC 58.996 47.619 0.00 0.00 37.34 3.51
2471 3010 2.006888 CTGTGACAAAACCACGACACT 58.993 47.619 0.00 0.00 37.34 3.55
2472 3011 1.063469 CCTGTGACAAAACCACGACAC 59.937 52.381 0.00 0.00 37.34 3.67
2473 3012 1.374560 CCTGTGACAAAACCACGACA 58.625 50.000 0.00 0.00 37.34 4.35
2474 3013 0.028902 GCCTGTGACAAAACCACGAC 59.971 55.000 0.00 0.00 37.34 4.34
2475 3014 1.433053 CGCCTGTGACAAAACCACGA 61.433 55.000 0.00 0.00 37.34 4.35
2476 3015 1.010125 CGCCTGTGACAAAACCACG 60.010 57.895 0.00 0.00 37.34 4.94
2477 3016 0.028902 GTCGCCTGTGACAAAACCAC 59.971 55.000 5.99 0.00 38.75 4.16
2478 3017 0.107410 AGTCGCCTGTGACAAAACCA 60.107 50.000 12.87 0.00 41.41 3.67
2479 3018 1.873698 TAGTCGCCTGTGACAAAACC 58.126 50.000 12.87 0.00 41.41 3.27
2480 3019 3.955771 TTTAGTCGCCTGTGACAAAAC 57.044 42.857 12.87 0.00 41.41 2.43
2481 3020 5.508200 AATTTTAGTCGCCTGTGACAAAA 57.492 34.783 12.87 14.87 41.41 2.44
2482 3021 5.508200 AAATTTTAGTCGCCTGTGACAAA 57.492 34.783 12.87 6.28 41.41 2.83
2483 3022 6.038382 TGTTAAATTTTAGTCGCCTGTGACAA 59.962 34.615 12.87 3.36 41.41 3.18
2484 3023 5.527951 TGTTAAATTTTAGTCGCCTGTGACA 59.472 36.000 12.87 0.00 41.41 3.58
2485 3024 5.992729 TGTTAAATTTTAGTCGCCTGTGAC 58.007 37.500 0.00 2.66 39.21 3.67
2486 3025 6.128117 GGATGTTAAATTTTAGTCGCCTGTGA 60.128 38.462 0.00 0.00 0.00 3.58
2487 3026 6.027749 GGATGTTAAATTTTAGTCGCCTGTG 58.972 40.000 0.00 0.00 0.00 3.66
2488 3027 5.124936 GGGATGTTAAATTTTAGTCGCCTGT 59.875 40.000 0.00 0.00 0.00 4.00
2489 3028 5.578776 GGGATGTTAAATTTTAGTCGCCTG 58.421 41.667 0.00 0.00 0.00 4.85
2490 3029 4.334481 CGGGATGTTAAATTTTAGTCGCCT 59.666 41.667 0.00 0.00 0.00 5.52
2491 3030 4.594136 CGGGATGTTAAATTTTAGTCGCC 58.406 43.478 0.00 0.00 0.00 5.54
2492 3031 4.033019 GCGGGATGTTAAATTTTAGTCGC 58.967 43.478 0.00 0.56 0.00 5.19
2493 3032 4.496840 GGGCGGGATGTTAAATTTTAGTCG 60.497 45.833 0.00 0.00 0.00 4.18
2494 3033 4.643334 AGGGCGGGATGTTAAATTTTAGTC 59.357 41.667 0.00 0.00 0.00 2.59
2495 3034 4.606210 AGGGCGGGATGTTAAATTTTAGT 58.394 39.130 0.00 0.00 0.00 2.24
2496 3035 4.887655 AGAGGGCGGGATGTTAAATTTTAG 59.112 41.667 0.00 0.00 0.00 1.85
2497 3036 4.862371 AGAGGGCGGGATGTTAAATTTTA 58.138 39.130 0.00 0.00 0.00 1.52
2498 3037 3.699538 GAGAGGGCGGGATGTTAAATTTT 59.300 43.478 0.00 0.00 0.00 1.82
2499 3038 3.053619 AGAGAGGGCGGGATGTTAAATTT 60.054 43.478 0.00 0.00 0.00 1.82
2500 3039 2.509964 AGAGAGGGCGGGATGTTAAATT 59.490 45.455 0.00 0.00 0.00 1.82
2501 3040 2.127708 AGAGAGGGCGGGATGTTAAAT 58.872 47.619 0.00 0.00 0.00 1.40
2502 3041 1.209504 CAGAGAGGGCGGGATGTTAAA 59.790 52.381 0.00 0.00 0.00 1.52
2503 3042 0.830648 CAGAGAGGGCGGGATGTTAA 59.169 55.000 0.00 0.00 0.00 2.01
2504 3043 0.325296 ACAGAGAGGGCGGGATGTTA 60.325 55.000 0.00 0.00 0.00 2.41
2505 3044 0.325296 TACAGAGAGGGCGGGATGTT 60.325 55.000 0.00 0.00 0.00 2.71
2506 3045 0.105453 ATACAGAGAGGGCGGGATGT 60.105 55.000 0.00 0.00 0.00 3.06
2507 3046 1.821753 CTATACAGAGAGGGCGGGATG 59.178 57.143 0.00 0.00 0.00 3.51
2508 3047 1.429687 ACTATACAGAGAGGGCGGGAT 59.570 52.381 0.00 0.00 0.00 3.85
2509 3048 0.851469 ACTATACAGAGAGGGCGGGA 59.149 55.000 0.00 0.00 0.00 5.14
2510 3049 0.962489 CACTATACAGAGAGGGCGGG 59.038 60.000 0.00 0.00 0.00 6.13
2511 3050 0.962489 CCACTATACAGAGAGGGCGG 59.038 60.000 0.00 0.00 0.00 6.13
2512 3051 1.693627 ACCACTATACAGAGAGGGCG 58.306 55.000 0.00 0.00 0.00 6.13
2513 3052 4.192317 CAAAACCACTATACAGAGAGGGC 58.808 47.826 0.00 0.00 0.00 5.19
2514 3053 4.192317 GCAAAACCACTATACAGAGAGGG 58.808 47.826 0.00 0.00 0.00 4.30
2515 3054 4.631813 GTGCAAAACCACTATACAGAGAGG 59.368 45.833 0.00 0.00 33.02 3.69
2516 3055 4.327357 CGTGCAAAACCACTATACAGAGAG 59.673 45.833 0.00 0.00 33.60 3.20
2517 3056 4.242475 CGTGCAAAACCACTATACAGAGA 58.758 43.478 0.00 0.00 33.60 3.10
2518 3057 3.370978 CCGTGCAAAACCACTATACAGAG 59.629 47.826 0.00 0.00 33.60 3.35
2519 3058 3.244284 ACCGTGCAAAACCACTATACAGA 60.244 43.478 0.00 0.00 33.60 3.41
2520 3059 3.071479 ACCGTGCAAAACCACTATACAG 58.929 45.455 0.00 0.00 33.60 2.74
2521 3060 3.128852 ACCGTGCAAAACCACTATACA 57.871 42.857 0.00 0.00 33.60 2.29
2522 3061 4.492791 AAACCGTGCAAAACCACTATAC 57.507 40.909 0.00 0.00 33.60 1.47
2523 3062 4.261656 CCAAAACCGTGCAAAACCACTATA 60.262 41.667 0.00 0.00 33.60 1.31
2524 3063 3.491792 CCAAAACCGTGCAAAACCACTAT 60.492 43.478 0.00 0.00 33.60 2.12
2525 3064 2.159226 CCAAAACCGTGCAAAACCACTA 60.159 45.455 0.00 0.00 33.60 2.74
2526 3065 1.404851 CCAAAACCGTGCAAAACCACT 60.405 47.619 0.00 0.00 33.60 4.00
2527 3066 1.003108 CCAAAACCGTGCAAAACCAC 58.997 50.000 0.00 0.00 0.00 4.16
2528 3067 0.895530 TCCAAAACCGTGCAAAACCA 59.104 45.000 0.00 0.00 0.00 3.67
2529 3068 2.232756 ATCCAAAACCGTGCAAAACC 57.767 45.000 0.00 0.00 0.00 3.27
2530 3069 3.302156 CGAAATCCAAAACCGTGCAAAAC 60.302 43.478 0.00 0.00 0.00 2.43
2531 3070 2.860735 CGAAATCCAAAACCGTGCAAAA 59.139 40.909 0.00 0.00 0.00 2.44
2532 3071 2.159226 ACGAAATCCAAAACCGTGCAAA 60.159 40.909 0.00 0.00 31.85 3.68
2533 3072 1.405821 ACGAAATCCAAAACCGTGCAA 59.594 42.857 0.00 0.00 31.85 4.08
2534 3073 1.025812 ACGAAATCCAAAACCGTGCA 58.974 45.000 0.00 0.00 31.85 4.57
2893 3446 3.999285 ACGTCCTCCCAGCCTCCT 61.999 66.667 0.00 0.00 0.00 3.69
2894 3447 3.775654 CACGTCCTCCCAGCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
2895 3448 3.775654 CCACGTCCTCCCAGCCTC 61.776 72.222 0.00 0.00 0.00 4.70
3016 3575 1.596934 CAGCGAGCCTTCCCTAACA 59.403 57.895 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.