Multiple sequence alignment - TraesCS7B01G073300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G073300 chr7B 100.000 5731 0 0 1 5731 81689948 81695678 0.000000e+00 10584.0
1 TraesCS7B01G073300 chr7D 93.722 1991 84 12 2884 4863 120323563 120325523 0.000000e+00 2946.0
2 TraesCS7B01G073300 chr7D 95.742 1409 21 9 701 2104 120321210 120322584 0.000000e+00 2233.0
3 TraesCS7B01G073300 chr7D 94.434 539 22 4 2347 2883 120322948 120323480 0.000000e+00 822.0
4 TraesCS7B01G073300 chr7D 92.143 280 21 1 3717 3995 539382082 539381803 1.500000e-105 394.0
5 TraesCS7B01G073300 chr7D 91.795 195 16 0 2153 2347 120322584 120322778 7.320000e-69 272.0
6 TraesCS7B01G073300 chr7D 90.909 55 5 0 2101 2155 447760507 447760453 2.210000e-09 75.0
7 TraesCS7B01G073300 chr7D 100.000 33 0 0 2100 2132 304144491 304144459 1.720000e-05 62.1
8 TraesCS7B01G073300 chr7A 92.504 2001 90 19 2884 4866 125264696 125266654 0.000000e+00 2809.0
9 TraesCS7B01G073300 chr7A 93.470 1761 61 27 361 2104 125262062 125263785 0.000000e+00 2566.0
10 TraesCS7B01G073300 chr7A 91.031 524 28 6 2363 2883 125264110 125264617 0.000000e+00 689.0
11 TraesCS7B01G073300 chr7A 94.359 195 11 0 2153 2347 125263785 125263979 3.360000e-77 300.0
12 TraesCS7B01G073300 chr7A 80.997 321 46 10 5425 5731 602710009 602710328 2.060000e-59 241.0
13 TraesCS7B01G073300 chr7A 80.745 322 46 10 5425 5731 602740032 602740352 2.670000e-58 237.0
14 TraesCS7B01G073300 chr7A 87.097 93 10 2 5305 5396 660129058 660129149 2.820000e-18 104.0
15 TraesCS7B01G073300 chr7A 97.297 37 1 0 2096 2132 4898719 4898755 4.790000e-06 63.9
16 TraesCS7B01G073300 chr6A 85.512 635 89 3 1167 1798 562377879 562377245 0.000000e+00 660.0
17 TraesCS7B01G073300 chr6A 89.189 296 32 0 3716 4011 503240926 503241221 2.520000e-98 370.0
18 TraesCS7B01G073300 chr6A 100.000 36 0 0 2120 2155 19035410 19035375 3.710000e-07 67.6
19 TraesCS7B01G073300 chr6A 100.000 36 0 0 2120 2155 19125135 19125100 3.710000e-07 67.6
20 TraesCS7B01G073300 chr6A 89.796 49 5 0 562 610 219634160 219634112 4.790000e-06 63.9
21 TraesCS7B01G073300 chr6A 97.222 36 1 0 2097 2132 220501096 220501131 1.720000e-05 62.1
22 TraesCS7B01G073300 chr6B 86.088 611 84 1 1188 1797 631203475 631202865 0.000000e+00 656.0
23 TraesCS7B01G073300 chr6B 85.668 614 87 1 1185 1797 630846918 630847531 0.000000e+00 645.0
24 TraesCS7B01G073300 chr6B 88.462 78 9 0 4937 5014 508497506 508497429 1.700000e-15 95.3
25 TraesCS7B01G073300 chr6B 88.462 78 9 0 4937 5014 508519490 508519413 1.700000e-15 95.3
26 TraesCS7B01G073300 chr6B 95.122 41 2 0 567 607 54696131 54696171 1.330000e-06 65.8
27 TraesCS7B01G073300 chr6B 94.872 39 1 1 2097 2135 46425169 46425132 6.200000e-05 60.2
28 TraesCS7B01G073300 chr6D 85.574 610 88 0 1189 1798 418742534 418741925 1.740000e-179 640.0
29 TraesCS7B01G073300 chr6D 90.196 306 26 3 3709 4011 233990170 233990474 4.160000e-106 396.0
30 TraesCS7B01G073300 chr6D 73.043 460 80 20 4942 5371 322974349 322973904 7.800000e-24 122.0
31 TraesCS7B01G073300 chr6D 88.421 95 8 3 5305 5397 450567634 450567727 1.690000e-20 111.0
32 TraesCS7B01G073300 chr6D 87.671 73 9 0 4942 5014 132285064 132285136 1.020000e-12 86.1
33 TraesCS7B01G073300 chr6D 92.727 55 4 0 2101 2155 469492411 469492357 4.760000e-11 80.5
34 TraesCS7B01G073300 chr6D 92.727 55 4 0 2101 2155 469511219 469511165 4.760000e-11 80.5
35 TraesCS7B01G073300 chr6D 100.000 36 0 0 2120 2155 18902693 18902658 3.710000e-07 67.6
36 TraesCS7B01G073300 chr6D 97.222 36 0 1 2097 2132 131848480 131848446 6.200000e-05 60.2
37 TraesCS7B01G073300 chr6D 91.111 45 1 3 224 268 439170857 439170816 2.230000e-04 58.4
38 TraesCS7B01G073300 chr4D 91.438 292 23 2 3720 4009 508709705 508709414 3.220000e-107 399.0
39 TraesCS7B01G073300 chr4D 100.000 33 0 0 2100 2132 386014672 386014640 1.720000e-05 62.1
40 TraesCS7B01G073300 chr4D 100.000 32 0 0 2101 2132 108100127 108100096 6.200000e-05 60.2
41 TraesCS7B01G073300 chr4D 100.000 32 0 0 2101 2132 418423494 418423525 6.200000e-05 60.2
42 TraesCS7B01G073300 chr4D 89.362 47 2 3 2099 2144 321804862 321804818 8.020000e-04 56.5
43 TraesCS7B01G073300 chr1D 92.963 270 18 1 3716 3984 103032237 103031968 5.380000e-105 392.0
44 TraesCS7B01G073300 chr1D 87.192 203 21 5 5530 5731 480979901 480980099 5.780000e-55 226.0
45 TraesCS7B01G073300 chr1D 81.481 135 18 6 5308 5441 450115024 450114896 2.820000e-18 104.0
46 TraesCS7B01G073300 chr1D 83.186 113 15 4 5323 5435 375364355 375364247 3.650000e-17 100.0
47 TraesCS7B01G073300 chr1D 89.041 73 8 0 4942 5014 256203652 256203724 2.200000e-14 91.6
48 TraesCS7B01G073300 chr1D 97.222 36 1 0 5026 5061 403763931 403763896 1.720000e-05 62.1
49 TraesCS7B01G073300 chr3A 91.135 282 23 2 3715 3995 151313252 151313532 1.170000e-101 381.0
50 TraesCS7B01G073300 chr3A 86.486 74 10 0 4941 5014 523606681 523606608 1.320000e-11 82.4
51 TraesCS7B01G073300 chr1A 90.000 290 29 0 3719 4008 497854750 497855039 5.420000e-100 375.0
52 TraesCS7B01G073300 chr1A 88.177 203 20 4 5530 5731 548235897 548236096 7.420000e-59 239.0
53 TraesCS7B01G073300 chr1A 97.368 38 0 1 2098 2135 247339070 247339034 4.790000e-06 63.9
54 TraesCS7B01G073300 chr1A 100.000 33 0 0 2100 2132 22827638 22827606 1.720000e-05 62.1
55 TraesCS7B01G073300 chr3D 84.337 332 29 7 3711 4021 588147810 588148139 2.590000e-78 303.0
56 TraesCS7B01G073300 chr3D 80.495 323 43 12 5425 5731 504420351 504420033 4.470000e-56 230.0
57 TraesCS7B01G073300 chr3D 86.111 144 19 1 4942 5085 563226222 563226080 2.770000e-33 154.0
58 TraesCS7B01G073300 chr3D 84.138 145 21 2 4942 5085 562999259 562999116 7.740000e-29 139.0
59 TraesCS7B01G073300 chr2D 74.146 820 125 49 4966 5731 537517138 537516352 5.700000e-65 259.0
60 TraesCS7B01G073300 chr2D 86.058 208 25 4 5526 5731 489573416 489573211 2.690000e-53 220.0
61 TraesCS7B01G073300 chr2D 86.341 205 23 4 5530 5731 52589360 52589158 9.670000e-53 219.0
62 TraesCS7B01G073300 chr2D 97.368 38 1 0 558 595 404031828 404031865 1.330000e-06 65.8
63 TraesCS7B01G073300 chr5D 81.481 297 39 8 5448 5731 22457366 22457073 4.470000e-56 230.0
64 TraesCS7B01G073300 chr5D 76.654 257 42 12 5155 5397 497016438 497016690 6.030000e-25 126.0
65 TraesCS7B01G073300 chr5D 90.217 92 7 2 5305 5396 259455352 259455441 1.010000e-22 119.0
66 TraesCS7B01G073300 chr5D 87.234 94 6 6 5306 5397 52268587 52268676 1.020000e-17 102.0
67 TraesCS7B01G073300 chr5D 86.458 96 6 6 5306 5398 52266649 52266740 1.310000e-16 99.0
68 TraesCS7B01G073300 chr5D 92.500 40 3 0 567 606 362890952 362890913 2.230000e-04 58.4
69 TraesCS7B01G073300 chr5D 97.059 34 0 1 567 599 362891035 362891002 8.020000e-04 56.5
70 TraesCS7B01G073300 chr5A 80.062 321 48 11 5425 5731 7498929 7499247 2.080000e-54 224.0
71 TraesCS7B01G073300 chr3B 86.316 95 9 4 5305 5397 204806364 204806456 3.650000e-17 100.0
72 TraesCS7B01G073300 chr3B 100.000 36 0 0 2120 2155 133204181 133204146 3.710000e-07 67.6
73 TraesCS7B01G073300 chr3B 87.755 49 6 0 562 610 20086486 20086438 2.230000e-04 58.4
74 TraesCS7B01G073300 chr2A 83.486 109 16 2 4938 5046 82878432 82878538 3.650000e-17 100.0
75 TraesCS7B01G073300 chr1B 87.342 79 9 1 2884 2961 89696446 89696524 7.910000e-14 89.8
76 TraesCS7B01G073300 chr1B 91.837 49 4 0 562 610 512768231 512768183 1.030000e-07 69.4
77 TraesCS7B01G073300 chr1B 95.238 42 1 1 2091 2132 470591084 470591044 1.330000e-06 65.8
78 TraesCS7B01G073300 chr1B 100.000 32 0 0 2101 2132 133429253 133429222 6.200000e-05 60.2
79 TraesCS7B01G073300 chr2B 88.732 71 8 0 4942 5012 263826689 263826619 2.840000e-13 87.9
80 TraesCS7B01G073300 chr2B 95.556 45 2 0 562 606 438927386 438927342 7.970000e-09 73.1
81 TraesCS7B01G073300 chr2B 93.478 46 3 0 562 607 143954019 143954064 1.030000e-07 69.4
82 TraesCS7B01G073300 chr5B 90.323 62 6 0 2890 2951 13248764 13248703 1.320000e-11 82.4
83 TraesCS7B01G073300 chr5B 86.567 67 7 2 567 632 429394222 429394157 7.970000e-09 73.1
84 TraesCS7B01G073300 chr5B 85.965 57 6 2 567 622 429362752 429362697 6.200000e-05 60.2
85 TraesCS7B01G073300 chr4A 90.000 50 4 1 562 610 681706315 681706266 4.790000e-06 63.9
86 TraesCS7B01G073300 chr4A 90.698 43 3 1 2093 2135 151301150 151301191 8.020000e-04 56.5
87 TraesCS7B01G073300 chrUn 100.000 33 0 0 2100 2132 323375471 323375503 1.720000e-05 62.1
88 TraesCS7B01G073300 chrUn 90.909 44 4 0 567 610 103547272 103547229 6.200000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G073300 chr7B 81689948 81695678 5730 False 10584.00 10584 100.00000 1 5731 1 chr7B.!!$F1 5730
1 TraesCS7B01G073300 chr7D 120321210 120325523 4313 False 1568.25 2946 93.92325 701 4863 4 chr7D.!!$F1 4162
2 TraesCS7B01G073300 chr7A 125262062 125266654 4592 False 1591.00 2809 92.84100 361 4866 4 chr7A.!!$F5 4505
3 TraesCS7B01G073300 chr6A 562377245 562377879 634 True 660.00 660 85.51200 1167 1798 1 chr6A.!!$R4 631
4 TraesCS7B01G073300 chr6B 631202865 631203475 610 True 656.00 656 86.08800 1188 1797 1 chr6B.!!$R4 609
5 TraesCS7B01G073300 chr6B 630846918 630847531 613 False 645.00 645 85.66800 1185 1797 1 chr6B.!!$F2 612
6 TraesCS7B01G073300 chr6D 418741925 418742534 609 True 640.00 640 85.57400 1189 1798 1 chr6D.!!$R4 609
7 TraesCS7B01G073300 chr2D 537516352 537517138 786 True 259.00 259 74.14600 4966 5731 1 chr2D.!!$R3 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 637 0.118346 TCCCCTCCTGCTAAACCTGA 59.882 55.000 0.00 0.00 0.0 3.86 F
636 638 0.543749 CCCCTCCTGCTAAACCTGAG 59.456 60.000 0.00 0.00 0.0 3.35 F
2289 2328 0.038166 ACAGTTGGCGGTTGGATGAT 59.962 50.000 0.00 0.00 0.0 2.45 F
2638 2850 0.037590 TTGGTGAGGTACATGTGGCC 59.962 55.000 9.11 10.79 0.0 5.36 F
3015 3328 1.006571 CTGCTTGCCTGCTTTGGTG 60.007 57.895 0.00 0.00 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 2206 0.263172 TTTTGGGTCTGGGCTGGAAA 59.737 50.000 0.00 0.00 0.00 3.13 R
2349 2388 1.131883 GCTGCACTAAGAATGCTGTGG 59.868 52.381 0.00 0.00 43.77 4.17 R
3112 3425 0.322098 CATAGGTCCCGTTTGCCACA 60.322 55.000 0.00 0.00 0.00 4.17 R
4391 4724 0.804933 GGTACGAGTCGTGGATTGCC 60.805 60.000 27.85 14.93 41.39 4.52 R
4872 5217 0.109132 GCCCAATTTCCTTGTCAGCG 60.109 55.000 0.00 0.00 32.61 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 181 8.706656 AAAAACAGAAAACGACAACAAAATTG 57.293 26.923 0.00 0.00 0.00 2.32
181 182 6.401955 AACAGAAAACGACAACAAAATTGG 57.598 33.333 0.00 0.00 0.00 3.16
182 183 5.715070 ACAGAAAACGACAACAAAATTGGA 58.285 33.333 0.00 0.00 0.00 3.53
183 184 6.159988 ACAGAAAACGACAACAAAATTGGAA 58.840 32.000 0.00 0.00 0.00 3.53
184 185 6.647067 ACAGAAAACGACAACAAAATTGGAAA 59.353 30.769 0.00 0.00 0.00 3.13
185 186 7.333174 ACAGAAAACGACAACAAAATTGGAAAT 59.667 29.630 0.00 0.00 0.00 2.17
186 187 8.812329 CAGAAAACGACAACAAAATTGGAAATA 58.188 29.630 0.00 0.00 0.00 1.40
187 188 9.541143 AGAAAACGACAACAAAATTGGAAATAT 57.459 25.926 0.00 0.00 0.00 1.28
188 189 9.791838 GAAAACGACAACAAAATTGGAAATATC 57.208 29.630 0.00 0.00 0.00 1.63
189 190 8.879342 AAACGACAACAAAATTGGAAATATCA 57.121 26.923 0.00 0.00 0.00 2.15
190 191 8.879342 AACGACAACAAAATTGGAAATATCAA 57.121 26.923 0.00 0.00 0.00 2.57
191 192 8.293114 ACGACAACAAAATTGGAAATATCAAC 57.707 30.769 0.00 0.00 0.00 3.18
192 193 8.141268 ACGACAACAAAATTGGAAATATCAACT 58.859 29.630 0.00 0.00 0.00 3.16
193 194 9.619316 CGACAACAAAATTGGAAATATCAACTA 57.381 29.630 0.00 0.00 0.00 2.24
219 220 8.816640 TTTAAAGATGAACCATTTTTGAGAGC 57.183 30.769 5.92 0.00 32.01 4.09
220 221 6.409524 AAAGATGAACCATTTTTGAGAGCA 57.590 33.333 0.00 0.00 29.15 4.26
221 222 6.600882 AAGATGAACCATTTTTGAGAGCAT 57.399 33.333 0.00 0.00 0.00 3.79
222 223 5.962433 AGATGAACCATTTTTGAGAGCATG 58.038 37.500 0.00 0.00 0.00 4.06
223 224 5.713389 AGATGAACCATTTTTGAGAGCATGA 59.287 36.000 0.00 0.00 0.00 3.07
224 225 5.988310 TGAACCATTTTTGAGAGCATGAT 57.012 34.783 0.00 0.00 0.00 2.45
225 226 6.349243 TGAACCATTTTTGAGAGCATGATT 57.651 33.333 0.00 0.00 0.00 2.57
226 227 6.761312 TGAACCATTTTTGAGAGCATGATTT 58.239 32.000 0.00 0.00 0.00 2.17
227 228 7.218614 TGAACCATTTTTGAGAGCATGATTTT 58.781 30.769 0.00 0.00 0.00 1.82
228 229 7.716123 TGAACCATTTTTGAGAGCATGATTTTT 59.284 29.630 0.00 0.00 0.00 1.94
261 262 9.645059 TGTGAACAATTTTTGAAAATACAGACA 57.355 25.926 2.41 1.34 37.62 3.41
276 277 8.697507 AAATACAGACATATTTTCAGATCCCC 57.302 34.615 0.00 0.00 32.00 4.81
277 278 5.053978 ACAGACATATTTTCAGATCCCCC 57.946 43.478 0.00 0.00 0.00 5.40
278 279 4.478317 ACAGACATATTTTCAGATCCCCCA 59.522 41.667 0.00 0.00 0.00 4.96
279 280 5.044179 ACAGACATATTTTCAGATCCCCCAA 60.044 40.000 0.00 0.00 0.00 4.12
280 281 5.893255 CAGACATATTTTCAGATCCCCCAAA 59.107 40.000 0.00 0.00 0.00 3.28
281 282 6.380846 CAGACATATTTTCAGATCCCCCAAAA 59.619 38.462 0.00 0.00 0.00 2.44
282 283 6.959366 AGACATATTTTCAGATCCCCCAAAAA 59.041 34.615 0.00 0.00 0.00 1.94
283 284 7.624879 AGACATATTTTCAGATCCCCCAAAAAT 59.375 33.333 0.00 0.00 34.76 1.82
284 285 8.161640 ACATATTTTCAGATCCCCCAAAAATT 57.838 30.769 0.00 0.00 33.12 1.82
285 286 8.048514 ACATATTTTCAGATCCCCCAAAAATTG 58.951 33.333 0.00 0.00 33.12 2.32
286 287 6.700845 ATTTTCAGATCCCCCAAAAATTGA 57.299 33.333 0.00 0.00 0.00 2.57
287 288 6.506538 TTTTCAGATCCCCCAAAAATTGAA 57.493 33.333 0.00 0.00 0.00 2.69
288 289 6.506538 TTTCAGATCCCCCAAAAATTGAAA 57.493 33.333 0.00 0.00 32.68 2.69
289 290 6.506538 TTCAGATCCCCCAAAAATTGAAAA 57.493 33.333 0.00 0.00 0.00 2.29
290 291 5.863965 TCAGATCCCCCAAAAATTGAAAAC 58.136 37.500 0.00 0.00 0.00 2.43
291 292 4.690280 CAGATCCCCCAAAAATTGAAAACG 59.310 41.667 0.00 0.00 0.00 3.60
292 293 4.346709 AGATCCCCCAAAAATTGAAAACGT 59.653 37.500 0.00 0.00 0.00 3.99
293 294 5.540719 AGATCCCCCAAAAATTGAAAACGTA 59.459 36.000 0.00 0.00 0.00 3.57
294 295 5.810080 TCCCCCAAAAATTGAAAACGTAT 57.190 34.783 0.00 0.00 0.00 3.06
295 296 6.176014 TCCCCCAAAAATTGAAAACGTATT 57.824 33.333 0.00 0.00 0.00 1.89
296 297 5.992217 TCCCCCAAAAATTGAAAACGTATTG 59.008 36.000 0.00 0.00 0.00 1.90
297 298 5.760743 CCCCCAAAAATTGAAAACGTATTGT 59.239 36.000 0.00 0.00 0.00 2.71
298 299 6.261158 CCCCCAAAAATTGAAAACGTATTGTT 59.739 34.615 0.00 0.00 44.59 2.83
399 400 8.699749 GTGATAAACAGGAAAAAGAAAAATCGG 58.300 33.333 0.00 0.00 0.00 4.18
400 401 8.634444 TGATAAACAGGAAAAAGAAAAATCGGA 58.366 29.630 0.00 0.00 0.00 4.55
401 402 9.471084 GATAAACAGGAAAAAGAAAAATCGGAA 57.529 29.630 0.00 0.00 0.00 4.30
416 417 8.958175 AAAAATCGGAAAAGAAAACCAAAAAC 57.042 26.923 0.00 0.00 0.00 2.43
417 418 7.915293 AAATCGGAAAAGAAAACCAAAAACT 57.085 28.000 0.00 0.00 0.00 2.66
464 465 2.158813 GGGTATCCCGATGAAGAAGCAA 60.159 50.000 0.00 0.00 32.13 3.91
478 479 4.342427 GCAACATGCATGGGGAGA 57.658 55.556 29.41 0.00 44.26 3.71
483 484 2.045132 ATGCATGGGGAGAGGGGT 59.955 61.111 0.00 0.00 0.00 4.95
499 500 2.622962 GGTAGCCGGGCAACACAAC 61.623 63.158 23.09 8.71 39.74 3.32
503 504 1.068921 GCCGGGCAACACAACAATT 59.931 52.632 15.62 0.00 39.74 2.32
523 524 1.144708 TGGTGAGGATTGTTTGGCAGA 59.855 47.619 0.00 0.00 0.00 4.26
524 525 1.815003 GGTGAGGATTGTTTGGCAGAG 59.185 52.381 0.00 0.00 0.00 3.35
560 562 0.676782 GATTAGCACCTTGTGGCGGT 60.677 55.000 0.00 0.00 36.63 5.68
562 564 0.320946 TTAGCACCTTGTGGCGGTAC 60.321 55.000 0.00 0.00 36.63 3.34
568 570 0.802494 CCTTGTGGCGGTACAACATC 59.198 55.000 0.00 0.00 35.75 3.06
579 581 4.572389 GCGGTACAACATCTTGAGATTGAT 59.428 41.667 0.00 0.00 31.21 2.57
592 594 4.488879 TGAGATTGATGAAGTCGTCACAG 58.511 43.478 2.65 0.00 41.18 3.66
607 609 3.120792 GTCACAGACGCTTTTGTAGTCA 58.879 45.455 0.00 0.00 37.36 3.41
610 612 3.308595 CACAGACGCTTTTGTAGTCAACA 59.691 43.478 0.00 0.00 37.36 3.33
611 613 4.024893 CACAGACGCTTTTGTAGTCAACAT 60.025 41.667 0.00 0.00 38.10 2.71
618 620 5.379827 GCTTTTGTAGTCAACATAACGTCC 58.620 41.667 0.00 0.00 38.10 4.79
633 635 1.265454 CGTCCCCTCCTGCTAAACCT 61.265 60.000 0.00 0.00 0.00 3.50
634 636 0.253327 GTCCCCTCCTGCTAAACCTG 59.747 60.000 0.00 0.00 0.00 4.00
635 637 0.118346 TCCCCTCCTGCTAAACCTGA 59.882 55.000 0.00 0.00 0.00 3.86
636 638 0.543749 CCCCTCCTGCTAAACCTGAG 59.456 60.000 0.00 0.00 0.00 3.35
637 639 1.280457 CCCTCCTGCTAAACCTGAGT 58.720 55.000 0.00 0.00 0.00 3.41
638 640 1.630878 CCCTCCTGCTAAACCTGAGTT 59.369 52.381 0.00 0.00 38.03 3.01
639 641 2.616510 CCCTCCTGCTAAACCTGAGTTG 60.617 54.545 0.00 0.00 35.97 3.16
640 642 2.303022 CCTCCTGCTAAACCTGAGTTGA 59.697 50.000 0.00 0.00 35.97 3.18
641 643 3.054802 CCTCCTGCTAAACCTGAGTTGAT 60.055 47.826 0.00 0.00 35.97 2.57
642 644 4.566488 CCTCCTGCTAAACCTGAGTTGATT 60.566 45.833 0.00 0.00 35.97 2.57
643 645 4.579869 TCCTGCTAAACCTGAGTTGATTC 58.420 43.478 0.00 0.00 35.97 2.52
644 646 3.691609 CCTGCTAAACCTGAGTTGATTCC 59.308 47.826 0.00 0.00 35.97 3.01
645 647 4.326826 CTGCTAAACCTGAGTTGATTCCA 58.673 43.478 0.00 0.00 35.97 3.53
646 648 4.072131 TGCTAAACCTGAGTTGATTCCAC 58.928 43.478 0.00 0.00 35.97 4.02
647 649 3.440522 GCTAAACCTGAGTTGATTCCACC 59.559 47.826 0.00 0.00 35.97 4.61
648 650 3.593442 AAACCTGAGTTGATTCCACCA 57.407 42.857 0.00 0.00 35.97 4.17
649 651 2.568623 ACCTGAGTTGATTCCACCAC 57.431 50.000 0.00 0.00 0.00 4.16
650 652 1.270839 ACCTGAGTTGATTCCACCACG 60.271 52.381 0.00 0.00 0.00 4.94
651 653 1.001974 CCTGAGTTGATTCCACCACGA 59.998 52.381 0.00 0.00 0.00 4.35
652 654 2.341257 CTGAGTTGATTCCACCACGAG 58.659 52.381 0.00 0.00 0.00 4.18
712 718 4.380867 GGAATGTAACCATCTTTGTGGCAG 60.381 45.833 0.00 0.00 43.27 4.85
756 762 6.681777 ACAAGGCAAATCATCAAAGTACTTC 58.318 36.000 8.95 0.00 0.00 3.01
769 776 9.663904 CATCAAAGTACTTCAAAATTTCGAGAA 57.336 29.630 8.95 0.00 0.00 2.87
820 828 0.942252 TGGTCACGAGATATCGGTCG 59.058 55.000 15.07 11.61 42.04 4.79
848 875 0.798776 CCGCACAAGACACAGATTCC 59.201 55.000 0.00 0.00 0.00 3.01
849 876 1.511850 CGCACAAGACACAGATTCCA 58.488 50.000 0.00 0.00 0.00 3.53
850 877 1.872952 CGCACAAGACACAGATTCCAA 59.127 47.619 0.00 0.00 0.00 3.53
851 878 2.096069 CGCACAAGACACAGATTCCAAG 60.096 50.000 0.00 0.00 0.00 3.61
852 879 2.351157 GCACAAGACACAGATTCCAAGC 60.351 50.000 0.00 0.00 0.00 4.01
853 880 2.880268 CACAAGACACAGATTCCAAGCA 59.120 45.455 0.00 0.00 0.00 3.91
854 881 2.880890 ACAAGACACAGATTCCAAGCAC 59.119 45.455 0.00 0.00 0.00 4.40
855 882 2.880268 CAAGACACAGATTCCAAGCACA 59.120 45.455 0.00 0.00 0.00 4.57
856 883 3.213206 AGACACAGATTCCAAGCACAA 57.787 42.857 0.00 0.00 0.00 3.33
857 884 3.554934 AGACACAGATTCCAAGCACAAA 58.445 40.909 0.00 0.00 0.00 2.83
858 885 3.316308 AGACACAGATTCCAAGCACAAAC 59.684 43.478 0.00 0.00 0.00 2.93
859 886 3.023119 ACACAGATTCCAAGCACAAACA 58.977 40.909 0.00 0.00 0.00 2.83
860 887 3.067180 ACACAGATTCCAAGCACAAACAG 59.933 43.478 0.00 0.00 0.00 3.16
861 888 3.067180 CACAGATTCCAAGCACAAACAGT 59.933 43.478 0.00 0.00 0.00 3.55
862 889 4.275689 CACAGATTCCAAGCACAAACAGTA 59.724 41.667 0.00 0.00 0.00 2.74
863 890 5.048504 CACAGATTCCAAGCACAAACAGTAT 60.049 40.000 0.00 0.00 0.00 2.12
864 891 5.536161 ACAGATTCCAAGCACAAACAGTATT 59.464 36.000 0.00 0.00 0.00 1.89
865 892 6.040842 ACAGATTCCAAGCACAAACAGTATTT 59.959 34.615 0.00 0.00 0.00 1.40
866 893 6.583806 CAGATTCCAAGCACAAACAGTATTTC 59.416 38.462 0.00 0.00 0.00 2.17
1454 1489 3.129502 CCGTCTCCGTCCGCTACA 61.130 66.667 0.00 0.00 0.00 2.74
1661 1696 1.158434 CGCCGTCTACCTCTCCTATC 58.842 60.000 0.00 0.00 0.00 2.08
1852 1887 2.125912 CTGAACCCGACTGCCTCG 60.126 66.667 0.00 0.00 42.54 4.63
1855 1890 2.600769 AACCCGACTGCCTCGACT 60.601 61.111 2.57 0.00 46.14 4.18
2104 2143 8.970691 AAAGATTGTTTGCATACAACATACTC 57.029 30.769 22.46 15.93 40.53 2.59
2106 2145 5.637006 TTGTTTGCATACAACATACTCCC 57.363 39.130 17.34 0.00 34.87 4.30
2107 2146 4.917385 TGTTTGCATACAACATACTCCCT 58.083 39.130 7.58 0.00 34.87 4.20
2108 2147 4.941263 TGTTTGCATACAACATACTCCCTC 59.059 41.667 7.58 0.00 34.87 4.30
2109 2148 5.186198 GTTTGCATACAACATACTCCCTCT 58.814 41.667 2.09 0.00 34.87 3.69
2110 2149 4.406648 TGCATACAACATACTCCCTCTG 57.593 45.455 0.00 0.00 0.00 3.35
2111 2150 3.774766 TGCATACAACATACTCCCTCTGT 59.225 43.478 0.00 0.00 0.00 3.41
2112 2151 4.959839 TGCATACAACATACTCCCTCTGTA 59.040 41.667 0.00 0.00 0.00 2.74
2113 2152 5.423931 TGCATACAACATACTCCCTCTGTAA 59.576 40.000 0.00 0.00 0.00 2.41
2114 2153 6.070481 TGCATACAACATACTCCCTCTGTAAA 60.070 38.462 0.00 0.00 0.00 2.01
2115 2154 6.258068 GCATACAACATACTCCCTCTGTAAAC 59.742 42.308 0.00 0.00 0.00 2.01
2116 2155 7.556844 CATACAACATACTCCCTCTGTAAACT 58.443 38.462 0.00 0.00 0.00 2.66
2117 2156 6.435292 ACAACATACTCCCTCTGTAAACTT 57.565 37.500 0.00 0.00 0.00 2.66
2118 2157 6.838382 ACAACATACTCCCTCTGTAAACTTT 58.162 36.000 0.00 0.00 0.00 2.66
2119 2158 7.287810 ACAACATACTCCCTCTGTAAACTTTT 58.712 34.615 0.00 0.00 0.00 2.27
2120 2159 8.434392 ACAACATACTCCCTCTGTAAACTTTTA 58.566 33.333 0.00 0.00 0.00 1.52
2121 2160 9.449719 CAACATACTCCCTCTGTAAACTTTTAT 57.550 33.333 0.00 0.00 0.00 1.40
2127 2166 8.041919 ACTCCCTCTGTAAACTTTTATAAGAGC 58.958 37.037 13.76 0.00 36.27 4.09
2128 2167 7.039882 TCCCTCTGTAAACTTTTATAAGAGCG 58.960 38.462 13.76 9.07 36.27 5.03
2129 2168 6.817140 CCCTCTGTAAACTTTTATAAGAGCGT 59.183 38.462 13.76 0.00 36.27 5.07
2130 2169 7.333672 CCCTCTGTAAACTTTTATAAGAGCGTT 59.666 37.037 13.76 1.38 36.27 4.84
2131 2170 8.718734 CCTCTGTAAACTTTTATAAGAGCGTTT 58.281 33.333 13.76 6.02 36.27 3.60
2140 2179 9.654663 ACTTTTATAAGAGCGTTTTAGTGATCT 57.345 29.630 3.00 0.00 35.30 2.75
2145 2184 6.390987 AAGAGCGTTTTAGTGATCTAAACG 57.609 37.500 20.70 20.70 43.20 3.60
2147 2186 4.579270 GCGTTTTAGTGATCTAAACGCT 57.421 40.909 30.30 10.16 46.70 5.07
2148 2187 4.566177 GCGTTTTAGTGATCTAAACGCTC 58.434 43.478 30.30 16.83 46.70 5.03
2149 2188 4.326548 GCGTTTTAGTGATCTAAACGCTCT 59.673 41.667 30.30 9.60 46.70 4.09
2150 2189 5.163982 GCGTTTTAGTGATCTAAACGCTCTT 60.164 40.000 30.30 1.57 46.70 2.85
2151 2190 6.034256 GCGTTTTAGTGATCTAAACGCTCTTA 59.966 38.462 30.30 2.87 46.70 2.10
2152 2191 7.254017 GCGTTTTAGTGATCTAAACGCTCTTAT 60.254 37.037 30.30 0.52 46.70 1.73
2167 2206 9.998106 AAACGCTCTTATATGATTATTACCAGT 57.002 29.630 0.00 0.00 0.00 4.00
2194 2233 2.175715 GCCCAGACCCAAAAGGATAGAT 59.824 50.000 0.00 0.00 39.89 1.98
2199 2238 4.342378 CAGACCCAAAAGGATAGATCGAGA 59.658 45.833 0.00 0.00 39.89 4.04
2289 2328 0.038166 ACAGTTGGCGGTTGGATGAT 59.962 50.000 0.00 0.00 0.00 2.45
2294 2333 1.199615 TGGCGGTTGGATGATAGTGA 58.800 50.000 0.00 0.00 0.00 3.41
2297 2336 2.417719 GCGGTTGGATGATAGTGATCC 58.582 52.381 0.00 0.00 40.04 3.36
2312 2351 5.614324 AGTGATCCGGTTATTCAGATTCA 57.386 39.130 0.00 0.00 0.00 2.57
2328 2367 7.053316 TCAGATTCAGAATTTTGGCTTTTGA 57.947 32.000 0.00 0.00 0.00 2.69
2347 2386 9.415544 GCTTTTGACAATTACTTTGAATGATCT 57.584 29.630 0.00 0.00 38.76 2.75
2349 2388 8.746922 TTTGACAATTACTTTGAATGATCTGC 57.253 30.769 0.00 0.00 38.76 4.26
2350 2389 6.855836 TGACAATTACTTTGAATGATCTGCC 58.144 36.000 0.00 0.00 38.76 4.85
2351 2390 6.433716 TGACAATTACTTTGAATGATCTGCCA 59.566 34.615 0.00 0.00 38.76 4.92
2352 2391 6.624423 ACAATTACTTTGAATGATCTGCCAC 58.376 36.000 0.00 0.00 38.76 5.01
2354 2393 5.885230 TTACTTTGAATGATCTGCCACAG 57.115 39.130 0.00 0.00 0.00 3.66
2355 2394 2.490903 ACTTTGAATGATCTGCCACAGC 59.509 45.455 0.00 0.00 40.48 4.40
2374 2585 4.021719 ACAGCATTCTTAGTGCAGCAAAAT 60.022 37.500 0.00 0.00 44.87 1.82
2377 2588 6.198403 CAGCATTCTTAGTGCAGCAAAATATG 59.802 38.462 0.00 3.65 44.87 1.78
2380 2591 5.818136 TCTTAGTGCAGCAAAATATGGAC 57.182 39.130 0.00 0.00 37.97 4.02
2399 2610 3.075884 GACAAGTCCGAGTCTGAGTACT 58.924 50.000 0.00 0.00 0.00 2.73
2418 2629 6.428295 AGTACTACTTCATTAGGCTGAGTCT 58.572 40.000 0.00 0.00 0.00 3.24
2422 2633 5.083533 ACTTCATTAGGCTGAGTCTGAAG 57.916 43.478 15.55 15.55 43.17 3.02
2437 2648 4.453819 AGTCTGAAGCTTGTACTGAATTGC 59.546 41.667 2.10 0.00 0.00 3.56
2461 2672 3.665745 ATTGCTCCAACATTTCCACAC 57.334 42.857 0.00 0.00 0.00 3.82
2472 2683 3.783362 TTCCACACGGCCCAACAGG 62.783 63.158 0.00 0.00 39.47 4.00
2565 2777 3.851979 TCATATCGGTGGTCCAGGATTA 58.148 45.455 9.94 0.00 0.00 1.75
2582 2794 3.445096 GGATTAGGACAAAGCATGCTTGT 59.555 43.478 32.54 28.40 36.26 3.16
2610 2822 7.414208 GCCTGCTAGGTTGTAAAAGATTAACTC 60.414 40.741 4.45 0.00 37.80 3.01
2618 2830 7.803659 GGTTGTAAAAGATTAACTCTTCTGTGC 59.196 37.037 0.00 0.00 43.60 4.57
2629 2841 2.300152 CTCTTCTGTGCTTGGTGAGGTA 59.700 50.000 0.00 0.00 0.00 3.08
2630 2842 2.037251 TCTTCTGTGCTTGGTGAGGTAC 59.963 50.000 0.00 0.00 0.00 3.34
2631 2843 1.419381 TCTGTGCTTGGTGAGGTACA 58.581 50.000 0.00 0.00 0.00 2.90
2632 2844 1.977854 TCTGTGCTTGGTGAGGTACAT 59.022 47.619 0.00 0.00 0.00 2.29
2633 2845 2.079158 CTGTGCTTGGTGAGGTACATG 58.921 52.381 0.00 0.00 0.00 3.21
2634 2846 1.419762 TGTGCTTGGTGAGGTACATGT 59.580 47.619 2.69 2.69 0.00 3.21
2635 2847 1.806542 GTGCTTGGTGAGGTACATGTG 59.193 52.381 9.11 0.00 0.00 3.21
2636 2848 1.271325 TGCTTGGTGAGGTACATGTGG 60.271 52.381 9.11 0.00 0.00 4.17
2637 2849 1.453155 CTTGGTGAGGTACATGTGGC 58.547 55.000 9.11 0.81 0.00 5.01
2638 2850 0.037590 TTGGTGAGGTACATGTGGCC 59.962 55.000 9.11 10.79 0.00 5.36
2712 2934 7.038048 GCACATATCAATCAGTATGCTAGCTA 58.962 38.462 17.23 2.58 34.76 3.32
2713 2935 7.547019 GCACATATCAATCAGTATGCTAGCTAA 59.453 37.037 17.23 0.31 34.76 3.09
2714 2936 9.428097 CACATATCAATCAGTATGCTAGCTAAA 57.572 33.333 17.23 0.00 34.76 1.85
2715 2937 9.429359 ACATATCAATCAGTATGCTAGCTAAAC 57.571 33.333 17.23 11.03 34.76 2.01
2716 2938 9.428097 CATATCAATCAGTATGCTAGCTAAACA 57.572 33.333 17.23 0.00 34.76 2.83
2717 2939 7.959689 ATCAATCAGTATGCTAGCTAAACAG 57.040 36.000 17.23 8.29 34.76 3.16
3015 3328 1.006571 CTGCTTGCCTGCTTTGGTG 60.007 57.895 0.00 0.00 0.00 4.17
3020 3333 3.376918 GCCTGCTTTGGTGCCTCC 61.377 66.667 0.00 0.00 0.00 4.30
3048 3361 7.760794 TGTTTATTTTTCTAATGATGCCTGCTG 59.239 33.333 0.00 0.00 0.00 4.41
3070 3383 6.569226 GCTGTTTGTTTCTCTGATTAGCATGT 60.569 38.462 0.00 0.00 0.00 3.21
3112 3425 2.092968 TGCTTCGGACTATGGATTGCTT 60.093 45.455 0.00 0.00 0.00 3.91
3127 3440 3.039134 CTTGTGGCAAACGGGACC 58.961 61.111 0.00 0.00 0.00 4.46
3136 3449 1.406341 GCAAACGGGACCTATGCACTA 60.406 52.381 0.00 0.00 37.00 2.74
3154 3467 4.798263 GCACTAACTGCTGGTAACTGTGTA 60.798 45.833 7.89 0.00 43.33 2.90
3212 3525 6.273071 AGTTACCTTGTCTTTTGTTCAATGC 58.727 36.000 0.00 0.00 0.00 3.56
3219 3532 6.201226 TGTCTTTTGTTCAATGCAGTTGTA 57.799 33.333 0.00 0.00 38.95 2.41
3220 3533 6.804677 TGTCTTTTGTTCAATGCAGTTGTAT 58.195 32.000 0.00 0.00 38.95 2.29
3221 3534 7.264221 TGTCTTTTGTTCAATGCAGTTGTATT 58.736 30.769 0.00 0.00 38.95 1.89
3222 3535 8.409371 TGTCTTTTGTTCAATGCAGTTGTATTA 58.591 29.630 0.00 0.00 38.95 0.98
3223 3536 8.690840 GTCTTTTGTTCAATGCAGTTGTATTAC 58.309 33.333 0.00 0.00 38.95 1.89
3224 3537 8.629158 TCTTTTGTTCAATGCAGTTGTATTACT 58.371 29.630 0.00 0.00 38.95 2.24
3225 3538 8.572828 TTTTGTTCAATGCAGTTGTATTACTG 57.427 30.769 0.00 0.00 46.55 2.74
3402 3715 1.954146 GCGGTGTCTCGTCTTGCAA 60.954 57.895 0.00 0.00 0.00 4.08
3675 3988 4.788925 TCCAAAAGGACAAGGAGAAGAA 57.211 40.909 0.00 0.00 0.00 2.52
3760 4073 8.556589 TGGAGGAATCTTGTAGGAATTTCATAA 58.443 33.333 0.00 0.00 0.00 1.90
3768 4081 8.772250 TCTTGTAGGAATTTCATAAGACAGGAT 58.228 33.333 0.00 0.00 0.00 3.24
3769 4082 9.401058 CTTGTAGGAATTTCATAAGACAGGATT 57.599 33.333 0.00 0.00 0.00 3.01
3770 4083 9.753674 TTGTAGGAATTTCATAAGACAGGATTT 57.246 29.630 0.00 0.00 0.00 2.17
3771 4084 9.396022 TGTAGGAATTTCATAAGACAGGATTTC 57.604 33.333 0.00 0.00 0.00 2.17
3772 4085 9.620259 GTAGGAATTTCATAAGACAGGATTTCT 57.380 33.333 0.00 0.00 0.00 2.52
4107 4437 8.934023 ATAGTTTTTGACTTCTTGTTGGGATA 57.066 30.769 0.00 0.00 39.86 2.59
4208 4541 7.961326 ATAAGGGAATTTTCTACTTGCATGT 57.039 32.000 10.40 10.40 0.00 3.21
4228 4561 6.470235 GCATGTTAAATTCAGGATCAACTTCG 59.530 38.462 0.00 0.00 0.00 3.79
4237 4570 3.868077 CAGGATCAACTTCGACCTCATTC 59.132 47.826 0.00 0.00 0.00 2.67
4421 4754 1.476891 GACTCGTACCTTGCTCCATCA 59.523 52.381 0.00 0.00 0.00 3.07
4517 4850 4.214327 GGAAGCCTCTCGCCCTCG 62.214 72.222 0.00 0.00 38.78 4.63
4524 4857 2.441348 TCTCGCCCTCGGTGCATA 60.441 61.111 0.00 0.00 36.13 3.14
4526 4859 1.153449 CTCGCCCTCGGTGCATAAA 60.153 57.895 0.00 0.00 36.13 1.40
4665 4998 0.512952 CTCGACGGCAAGGTTTTCTG 59.487 55.000 0.00 0.00 0.00 3.02
4764 5102 5.515270 TCTCTACGAAATTGTATCTGTTGCG 59.485 40.000 0.00 0.00 0.00 4.85
4774 5112 5.493133 TGTATCTGTTGCGTTGAAGTTTT 57.507 34.783 0.00 0.00 0.00 2.43
4778 5116 1.996191 TGTTGCGTTGAAGTTTTTGGC 59.004 42.857 0.00 0.00 0.00 4.52
4806 5144 7.213216 TCAGATCTCAGTCAACATATCTAGC 57.787 40.000 0.00 0.00 0.00 3.42
4819 5157 9.177608 TCAACATATCTAGCTTGCTACAATTTT 57.822 29.630 0.00 0.00 0.00 1.82
4855 5200 8.420222 TCAAACTCATTAAATGGCAGAAGAAAA 58.580 29.630 0.00 0.00 0.00 2.29
4874 5219 1.499049 AAAGAAGACAAGTCCGTCGC 58.501 50.000 0.00 0.00 40.98 5.19
4875 5220 0.674534 AAGAAGACAAGTCCGTCGCT 59.325 50.000 0.00 0.00 40.98 4.93
4876 5221 0.039074 AGAAGACAAGTCCGTCGCTG 60.039 55.000 0.00 0.00 40.98 5.18
4877 5222 0.039437 GAAGACAAGTCCGTCGCTGA 60.039 55.000 0.00 0.00 40.98 4.26
4878 5223 0.318784 AAGACAAGTCCGTCGCTGAC 60.319 55.000 0.00 0.00 40.98 3.51
4879 5224 1.007734 GACAAGTCCGTCGCTGACA 60.008 57.895 8.91 0.00 35.15 3.58
4880 5225 0.596600 GACAAGTCCGTCGCTGACAA 60.597 55.000 8.91 0.00 35.15 3.18
4881 5226 0.597637 ACAAGTCCGTCGCTGACAAG 60.598 55.000 8.91 0.01 35.15 3.16
4882 5227 1.006102 AAGTCCGTCGCTGACAAGG 60.006 57.895 8.91 3.78 35.15 3.61
4883 5228 1.461091 AAGTCCGTCGCTGACAAGGA 61.461 55.000 8.91 5.68 35.15 3.36
4884 5229 1.006571 GTCCGTCGCTGACAAGGAA 60.007 57.895 8.91 0.00 32.20 3.36
4885 5230 0.599204 GTCCGTCGCTGACAAGGAAA 60.599 55.000 8.91 0.00 32.20 3.13
4886 5231 0.320374 TCCGTCGCTGACAAGGAAAT 59.680 50.000 8.91 0.00 32.09 2.17
4887 5232 1.156736 CCGTCGCTGACAAGGAAATT 58.843 50.000 8.91 0.00 32.09 1.82
4888 5233 1.135972 CCGTCGCTGACAAGGAAATTG 60.136 52.381 8.91 0.00 45.01 2.32
4889 5234 1.135972 CGTCGCTGACAAGGAAATTGG 60.136 52.381 8.91 0.00 43.68 3.16
4890 5235 1.200020 GTCGCTGACAAGGAAATTGGG 59.800 52.381 4.20 0.00 43.68 4.12
4891 5236 0.109132 CGCTGACAAGGAAATTGGGC 60.109 55.000 0.00 0.00 43.68 5.36
4892 5237 1.260544 GCTGACAAGGAAATTGGGCT 58.739 50.000 0.00 0.00 43.68 5.19
4893 5238 2.446435 GCTGACAAGGAAATTGGGCTA 58.554 47.619 0.00 0.00 43.68 3.93
4894 5239 2.825532 GCTGACAAGGAAATTGGGCTAA 59.174 45.455 0.00 0.00 43.68 3.09
4895 5240 3.119352 GCTGACAAGGAAATTGGGCTAAG 60.119 47.826 0.00 0.00 43.68 2.18
4896 5241 4.082125 CTGACAAGGAAATTGGGCTAAGT 58.918 43.478 0.00 0.00 43.68 2.24
4897 5242 4.479158 TGACAAGGAAATTGGGCTAAGTT 58.521 39.130 0.00 0.00 43.68 2.66
4898 5243 4.522789 TGACAAGGAAATTGGGCTAAGTTC 59.477 41.667 14.31 14.31 43.68 3.01
4899 5244 4.479158 ACAAGGAAATTGGGCTAAGTTCA 58.521 39.130 22.09 0.00 43.29 3.18
4900 5245 4.280929 ACAAGGAAATTGGGCTAAGTTCAC 59.719 41.667 22.09 13.03 43.29 3.18
4901 5246 4.112634 AGGAAATTGGGCTAAGTTCACA 57.887 40.909 22.09 0.00 43.29 3.58
4902 5247 4.082125 AGGAAATTGGGCTAAGTTCACAG 58.918 43.478 22.09 0.00 43.29 3.66
4903 5248 3.193479 GGAAATTGGGCTAAGTTCACAGG 59.807 47.826 22.09 0.00 43.29 4.00
4904 5249 2.514458 ATTGGGCTAAGTTCACAGGG 57.486 50.000 0.00 0.00 0.00 4.45
4905 5250 1.440618 TTGGGCTAAGTTCACAGGGA 58.559 50.000 0.00 0.00 0.00 4.20
4906 5251 0.984230 TGGGCTAAGTTCACAGGGAG 59.016 55.000 0.00 0.00 0.00 4.30
4907 5252 0.393132 GGGCTAAGTTCACAGGGAGC 60.393 60.000 0.00 0.00 0.00 4.70
4908 5253 0.324943 GGCTAAGTTCACAGGGAGCA 59.675 55.000 0.00 0.00 0.00 4.26
4909 5254 1.065126 GGCTAAGTTCACAGGGAGCAT 60.065 52.381 0.00 0.00 0.00 3.79
4910 5255 2.284190 GCTAAGTTCACAGGGAGCATC 58.716 52.381 0.00 0.00 0.00 3.91
4911 5256 2.093235 GCTAAGTTCACAGGGAGCATCT 60.093 50.000 0.00 0.00 33.73 2.90
4912 5257 3.133003 GCTAAGTTCACAGGGAGCATCTA 59.867 47.826 0.00 0.00 33.73 1.98
4913 5258 4.202305 GCTAAGTTCACAGGGAGCATCTAT 60.202 45.833 0.00 0.00 33.73 1.98
4914 5259 5.011125 GCTAAGTTCACAGGGAGCATCTATA 59.989 44.000 0.00 0.00 33.73 1.31
4915 5260 6.295575 GCTAAGTTCACAGGGAGCATCTATAT 60.296 42.308 0.00 0.00 33.73 0.86
4916 5261 7.093727 GCTAAGTTCACAGGGAGCATCTATATA 60.094 40.741 0.00 0.00 33.73 0.86
4917 5262 6.849085 AGTTCACAGGGAGCATCTATATAG 57.151 41.667 3.10 3.10 33.73 1.31
4918 5263 6.556639 AGTTCACAGGGAGCATCTATATAGA 58.443 40.000 14.76 14.76 36.65 1.98
4919 5264 6.435904 AGTTCACAGGGAGCATCTATATAGAC 59.564 42.308 14.71 3.59 34.72 2.59
4920 5265 5.265191 TCACAGGGAGCATCTATATAGACC 58.735 45.833 14.71 10.94 34.72 3.85
4921 5266 5.015710 TCACAGGGAGCATCTATATAGACCT 59.984 44.000 14.71 12.78 34.72 3.85
4922 5267 5.359576 CACAGGGAGCATCTATATAGACCTC 59.640 48.000 22.50 22.50 34.72 3.85
4923 5268 5.255207 ACAGGGAGCATCTATATAGACCTCT 59.745 44.000 26.04 18.58 35.78 3.69
4924 5269 6.194235 CAGGGAGCATCTATATAGACCTCTT 58.806 44.000 26.04 18.16 35.78 2.85
4925 5270 6.667414 CAGGGAGCATCTATATAGACCTCTTT 59.333 42.308 26.04 17.95 35.78 2.52
4926 5271 7.180051 CAGGGAGCATCTATATAGACCTCTTTT 59.820 40.741 26.04 16.46 35.78 2.27
4927 5272 7.737149 AGGGAGCATCTATATAGACCTCTTTTT 59.263 37.037 26.04 14.99 35.78 1.94
4959 5304 5.613358 AAAAGGAGCAAATAGTTGACGAG 57.387 39.130 7.18 0.00 36.83 4.18
4960 5305 3.963428 AGGAGCAAATAGTTGACGAGT 57.037 42.857 7.18 0.00 36.83 4.18
4961 5306 3.589988 AGGAGCAAATAGTTGACGAGTG 58.410 45.455 7.18 0.00 36.83 3.51
4962 5307 2.094417 GGAGCAAATAGTTGACGAGTGC 59.906 50.000 7.18 0.00 36.83 4.40
4963 5308 2.996621 GAGCAAATAGTTGACGAGTGCT 59.003 45.455 7.18 0.00 36.83 4.40
4964 5309 2.996621 AGCAAATAGTTGACGAGTGCTC 59.003 45.455 7.18 0.00 36.83 4.26
4965 5310 2.996621 GCAAATAGTTGACGAGTGCTCT 59.003 45.455 7.18 0.00 36.83 4.09
4966 5311 3.433615 GCAAATAGTTGACGAGTGCTCTT 59.566 43.478 7.18 0.00 36.83 2.85
4967 5312 4.083802 GCAAATAGTTGACGAGTGCTCTTT 60.084 41.667 7.18 0.00 36.83 2.52
4968 5313 5.612865 CAAATAGTTGACGAGTGCTCTTTC 58.387 41.667 0.00 0.00 36.83 2.62
4969 5314 2.890808 AGTTGACGAGTGCTCTTTCA 57.109 45.000 0.00 0.00 0.00 2.69
5040 5387 0.532573 CTATGTGTCGTGCTCTGGGT 59.467 55.000 0.00 0.00 0.00 4.51
5045 5392 3.695606 TCGTGCTCTGGGTGCTCC 61.696 66.667 0.00 0.00 0.00 4.70
5058 5405 2.529632 GGTGCTCCCTCTGGAATTTTT 58.470 47.619 0.00 0.00 41.17 1.94
5084 5431 2.795117 ACGCGTTTTCGGCTTTTTAAA 58.205 38.095 5.58 0.00 44.29 1.52
5086 5433 2.784928 CGCGTTTTCGGCTTTTTAAACT 59.215 40.909 0.00 0.00 44.29 2.66
5087 5434 3.241091 CGCGTTTTCGGCTTTTTAAACTT 59.759 39.130 0.00 0.00 44.29 2.66
5088 5435 4.602308 CGCGTTTTCGGCTTTTTAAACTTC 60.602 41.667 0.00 0.00 44.29 3.01
5089 5436 4.317558 GCGTTTTCGGCTTTTTAAACTTCC 60.318 41.667 0.00 0.00 44.29 3.46
5093 5453 7.412129 CGTTTTCGGCTTTTTAAACTTCCTTTT 60.412 33.333 0.00 0.00 39.94 2.27
5096 5456 6.037726 TCGGCTTTTTAAACTTCCTTTTGAC 58.962 36.000 0.00 0.00 0.00 3.18
5100 5460 8.388103 GGCTTTTTAAACTTCCTTTTGACTTTC 58.612 33.333 0.00 0.00 0.00 2.62
5105 5465 5.836821 AACTTCCTTTTGACTTTCTGGTC 57.163 39.130 0.00 0.00 36.81 4.02
5108 5468 5.590663 ACTTCCTTTTGACTTTCTGGTCTTC 59.409 40.000 0.00 0.00 37.16 2.87
5127 5493 6.176896 GTCTTCTCTTCCTTAGCTTTTGGAT 58.823 40.000 0.00 0.00 0.00 3.41
5132 5500 9.533831 TTCTCTTCCTTAGCTTTTGGATAAAAT 57.466 29.630 0.00 0.00 35.39 1.82
5139 5507 9.598517 CCTTAGCTTTTGGATAAAATAATTGCA 57.401 29.630 0.00 0.00 35.39 4.08
5164 5532 5.793026 AAAACGCATTTCTTTTGCTTTCA 57.207 30.435 0.00 0.00 37.96 2.69
5166 5534 4.977741 ACGCATTTCTTTTGCTTTCATG 57.022 36.364 0.00 0.00 37.96 3.07
5167 5535 4.619973 ACGCATTTCTTTTGCTTTCATGA 58.380 34.783 0.00 0.00 37.96 3.07
5169 5537 4.919168 CGCATTTCTTTTGCTTTCATGAGA 59.081 37.500 0.00 0.00 37.96 3.27
5171 5539 5.347907 GCATTTCTTTTGCTTTCATGAGAGG 59.652 40.000 14.60 1.88 37.14 3.69
5172 5540 4.510038 TTCTTTTGCTTTCATGAGAGGC 57.490 40.909 14.60 11.46 0.00 4.70
5174 5542 4.084287 TCTTTTGCTTTCATGAGAGGCAT 58.916 39.130 14.60 0.00 35.43 4.40
5188 5560 5.237048 TGAGAGGCATGGTTTTATTTTTGC 58.763 37.500 0.00 0.00 0.00 3.68
5194 5566 4.327087 GCATGGTTTTATTTTTGCGAGAGG 59.673 41.667 0.00 0.00 0.00 3.69
5195 5567 5.708948 CATGGTTTTATTTTTGCGAGAGGA 58.291 37.500 0.00 0.00 0.00 3.71
5198 5570 5.067936 TGGTTTTATTTTTGCGAGAGGAACA 59.932 36.000 0.00 0.00 42.67 3.18
5199 5571 6.156519 GGTTTTATTTTTGCGAGAGGAACAT 58.843 36.000 0.00 0.00 42.67 2.71
5202 5574 2.559698 TTTTGCGAGAGGAACATCCA 57.440 45.000 0.00 0.00 42.67 3.41
5203 5575 2.559698 TTTGCGAGAGGAACATCCAA 57.440 45.000 0.00 0.00 42.67 3.53
5210 5582 2.323968 GAGGAACATCCAAGCCTCTC 57.676 55.000 0.00 0.00 42.81 3.20
5216 5588 1.339151 ACATCCAAGCCTCTCGGAAAC 60.339 52.381 0.00 0.00 31.18 2.78
5217 5589 0.984230 ATCCAAGCCTCTCGGAAACA 59.016 50.000 0.00 0.00 31.18 2.83
5219 5591 0.674895 CCAAGCCTCTCGGAAACAGG 60.675 60.000 0.00 0.00 0.00 4.00
5268 5645 2.094390 AGATGCATGAATTTGCTTGCGT 60.094 40.909 2.46 2.29 43.18 5.24
5271 5648 1.652124 GCATGAATTTGCTTGCGTGAG 59.348 47.619 0.00 0.00 39.57 3.51
5272 5649 2.923605 GCATGAATTTGCTTGCGTGAGT 60.924 45.455 0.00 0.00 39.57 3.41
5277 5654 1.454572 TTTGCTTGCGTGAGTGGCAT 61.455 50.000 0.00 0.00 40.62 4.40
5278 5655 0.605050 TTGCTTGCGTGAGTGGCATA 60.605 50.000 0.00 0.00 40.62 3.14
5279 5656 0.605050 TGCTTGCGTGAGTGGCATAA 60.605 50.000 0.00 0.00 40.62 1.90
5291 5668 5.870978 GTGAGTGGCATAATTTTGCTTTCAT 59.129 36.000 18.46 3.38 42.38 2.57
5295 5672 6.071221 AGTGGCATAATTTTGCTTTCATGAGA 60.071 34.615 18.46 0.00 42.38 3.27
5297 5674 5.751990 GGCATAATTTTGCTTTCATGAGAGG 59.248 40.000 18.46 1.88 42.38 3.69
5298 5675 5.233689 GCATAATTTTGCTTTCATGAGAGGC 59.766 40.000 14.60 11.46 39.57 4.70
5299 5676 4.877378 AATTTTGCTTTCATGAGAGGCA 57.123 36.364 14.60 13.67 34.29 4.75
5301 5678 1.159285 TTGCTTTCATGAGAGGCACG 58.841 50.000 14.60 0.00 35.28 5.34
5302 5679 0.674581 TGCTTTCATGAGAGGCACGG 60.675 55.000 14.60 0.00 32.29 4.94
5304 5681 1.081892 CTTTCATGAGAGGCACGGTG 58.918 55.000 5.33 3.15 0.00 4.94
5305 5682 0.684535 TTTCATGAGAGGCACGGTGA 59.315 50.000 13.29 0.00 0.00 4.02
5306 5683 0.684535 TTCATGAGAGGCACGGTGAA 59.315 50.000 13.29 0.00 0.00 3.18
5354 5740 1.148273 TGAGAGGCACGGTTTTGCT 59.852 52.632 0.00 0.00 42.56 3.91
5356 5742 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
5358 5744 1.152756 AGGCACGGTTTTGCTTCCT 60.153 52.632 0.00 0.00 42.56 3.36
5359 5745 1.007387 GGCACGGTTTTGCTTCCTG 60.007 57.895 0.00 0.00 42.56 3.86
5360 5746 1.661509 GCACGGTTTTGCTTCCTGC 60.662 57.895 0.00 0.00 39.59 4.85
5362 5748 1.525077 ACGGTTTTGCTTCCTGCGA 60.525 52.632 0.00 0.00 46.63 5.10
5383 5769 4.402851 GCATGGTTGTGCCTCTCA 57.597 55.556 0.00 0.00 39.18 3.27
5384 5770 2.177950 GCATGGTTGTGCCTCTCAG 58.822 57.895 0.00 0.00 39.18 3.35
5389 5775 1.211703 TGGTTGTGCCTCTCAGAAACA 59.788 47.619 0.00 0.00 42.52 2.83
5390 5776 2.297701 GGTTGTGCCTCTCAGAAACAA 58.702 47.619 0.00 0.00 35.85 2.83
5447 5833 1.895707 ACGAGAGGAACGACCGTGT 60.896 57.895 0.00 0.00 44.74 4.49
5449 5835 1.575576 CGAGAGGAACGACCGTGTCT 61.576 60.000 0.00 0.00 44.74 3.41
5451 5837 0.250814 AGAGGAACGACCGTGTCTCT 60.251 55.000 16.49 16.49 44.74 3.10
5452 5838 0.168568 GAGGAACGACCGTGTCTCTC 59.831 60.000 13.96 7.88 44.74 3.20
5518 5906 2.818130 GCATGGTTTTGCCTTCTTGA 57.182 45.000 0.00 0.00 36.60 3.02
5519 5907 3.110447 GCATGGTTTTGCCTTCTTGAA 57.890 42.857 0.00 0.00 36.60 2.69
5520 5908 3.465871 GCATGGTTTTGCCTTCTTGAAA 58.534 40.909 0.00 0.00 36.60 2.69
5521 5909 3.495753 GCATGGTTTTGCCTTCTTGAAAG 59.504 43.478 0.00 0.00 36.60 2.62
5522 5910 3.817709 TGGTTTTGCCTTCTTGAAAGG 57.182 42.857 0.00 0.00 40.39 3.11
5559 5947 0.110192 CCGTGCCTCTTTCGAAAAGC 60.110 55.000 12.41 14.74 0.00 3.51
5583 5971 2.577449 AAAAACTGTGCTTCCGGTTG 57.423 45.000 0.00 0.00 0.00 3.77
5587 5984 1.238439 ACTGTGCTTCCGGTTGATTG 58.762 50.000 0.00 0.00 0.00 2.67
5598 5995 0.519961 GGTTGATTGTTTCGTCCGGG 59.480 55.000 0.00 0.00 0.00 5.73
5640 6037 8.408043 AAGTTCATCAAAACCTATCAACATGA 57.592 30.769 0.00 0.00 0.00 3.07
5644 6041 8.812513 TCATCAAAACCTATCAACATGAGATT 57.187 30.769 0.00 0.00 0.00 2.40
5666 6063 3.026630 AGTTTTGAAGATCTCGACGCA 57.973 42.857 0.00 0.00 0.00 5.24
5675 6072 0.824109 ATCTCGACGCAAGGAATCCA 59.176 50.000 0.61 0.00 46.39 3.41
5679 6076 1.011968 CGACGCAAGGAATCCAACGA 61.012 55.000 13.98 0.00 46.39 3.85
5686 6083 4.675146 CGCAAGGAATCCAACGATGAAAAT 60.675 41.667 0.61 0.00 0.00 1.82
5691 6088 4.864247 GGAATCCAACGATGAAAATGGTTG 59.136 41.667 0.00 6.61 39.12 3.77
5697 6094 5.335127 CAACGATGAAAATGGTTGGAGATC 58.665 41.667 5.88 0.00 36.86 2.75
5702 6099 4.996793 TGAAAATGGTTGGAGATCTGGAA 58.003 39.130 0.00 0.00 0.00 3.53
5705 6102 0.250234 TGGTTGGAGATCTGGAAGCG 59.750 55.000 0.00 0.00 0.00 4.68
5712 6109 0.535335 AGATCTGGAAGCGCGGTTTA 59.465 50.000 25.80 15.88 0.00 2.01
5724 6121 5.156804 AGCGCGGTTTAAGAGATAAAATG 57.843 39.130 4.23 0.00 35.33 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 7.800847 CCAATTTTGTTGTCGTTTTCTGTTTTT 59.199 29.630 0.00 0.00 0.00 1.94
156 157 7.171678 TCCAATTTTGTTGTCGTTTTCTGTTTT 59.828 29.630 0.00 0.00 0.00 2.43
157 158 6.647067 TCCAATTTTGTTGTCGTTTTCTGTTT 59.353 30.769 0.00 0.00 0.00 2.83
158 159 6.159988 TCCAATTTTGTTGTCGTTTTCTGTT 58.840 32.000 0.00 0.00 0.00 3.16
159 160 5.715070 TCCAATTTTGTTGTCGTTTTCTGT 58.285 33.333 0.00 0.00 0.00 3.41
160 161 6.639671 TTCCAATTTTGTTGTCGTTTTCTG 57.360 33.333 0.00 0.00 0.00 3.02
161 162 7.841915 ATTTCCAATTTTGTTGTCGTTTTCT 57.158 28.000 0.00 0.00 0.00 2.52
162 163 9.791838 GATATTTCCAATTTTGTTGTCGTTTTC 57.208 29.630 0.00 0.00 0.00 2.29
163 164 9.319143 TGATATTTCCAATTTTGTTGTCGTTTT 57.681 25.926 0.00 0.00 0.00 2.43
164 165 8.879342 TGATATTTCCAATTTTGTTGTCGTTT 57.121 26.923 0.00 0.00 0.00 3.60
165 166 8.760569 GTTGATATTTCCAATTTTGTTGTCGTT 58.239 29.630 0.00 0.00 0.00 3.85
166 167 8.141268 AGTTGATATTTCCAATTTTGTTGTCGT 58.859 29.630 0.00 0.00 0.00 4.34
167 168 8.519492 AGTTGATATTTCCAATTTTGTTGTCG 57.481 30.769 0.00 0.00 0.00 4.35
193 194 9.428097 GCTCTCAAAAATGGTTCATCTTTAAAT 57.572 29.630 0.00 0.00 0.00 1.40
194 195 8.420222 TGCTCTCAAAAATGGTTCATCTTTAAA 58.580 29.630 0.00 0.00 0.00 1.52
195 196 7.950512 TGCTCTCAAAAATGGTTCATCTTTAA 58.049 30.769 0.00 0.00 0.00 1.52
196 197 7.523293 TGCTCTCAAAAATGGTTCATCTTTA 57.477 32.000 0.00 0.00 0.00 1.85
197 198 6.409524 TGCTCTCAAAAATGGTTCATCTTT 57.590 33.333 0.00 0.00 0.00 2.52
198 199 6.209986 TCATGCTCTCAAAAATGGTTCATCTT 59.790 34.615 0.00 0.00 0.00 2.40
199 200 5.713389 TCATGCTCTCAAAAATGGTTCATCT 59.287 36.000 0.00 0.00 0.00 2.90
200 201 5.957798 TCATGCTCTCAAAAATGGTTCATC 58.042 37.500 0.00 0.00 0.00 2.92
201 202 5.988310 TCATGCTCTCAAAAATGGTTCAT 57.012 34.783 0.00 0.00 0.00 2.57
202 203 5.988310 ATCATGCTCTCAAAAATGGTTCA 57.012 34.783 0.00 0.00 0.00 3.18
203 204 7.662604 AAAATCATGCTCTCAAAAATGGTTC 57.337 32.000 0.00 0.00 0.00 3.62
235 236 9.645059 TGTCTGTATTTTCAAAAATTGTTCACA 57.355 25.926 6.06 4.01 39.24 3.58
250 251 9.136323 GGGGATCTGAAAATATGTCTGTATTTT 57.864 33.333 4.76 4.76 43.37 1.82
251 252 7.725844 GGGGGATCTGAAAATATGTCTGTATTT 59.274 37.037 0.00 0.00 36.18 1.40
252 253 7.147141 TGGGGGATCTGAAAATATGTCTGTATT 60.147 37.037 0.00 0.00 0.00 1.89
253 254 6.332635 TGGGGGATCTGAAAATATGTCTGTAT 59.667 38.462 0.00 0.00 0.00 2.29
254 255 5.669904 TGGGGGATCTGAAAATATGTCTGTA 59.330 40.000 0.00 0.00 0.00 2.74
255 256 4.478317 TGGGGGATCTGAAAATATGTCTGT 59.522 41.667 0.00 0.00 0.00 3.41
256 257 5.052693 TGGGGGATCTGAAAATATGTCTG 57.947 43.478 0.00 0.00 0.00 3.51
257 258 5.732331 TTGGGGGATCTGAAAATATGTCT 57.268 39.130 0.00 0.00 0.00 3.41
258 259 6.790232 TTTTGGGGGATCTGAAAATATGTC 57.210 37.500 0.00 0.00 0.00 3.06
259 260 7.754091 ATTTTTGGGGGATCTGAAAATATGT 57.246 32.000 0.00 0.00 30.57 2.29
260 261 8.266473 TCAATTTTTGGGGGATCTGAAAATATG 58.734 33.333 0.00 0.00 31.70 1.78
261 262 8.391305 TCAATTTTTGGGGGATCTGAAAATAT 57.609 30.769 0.00 0.00 31.70 1.28
262 263 7.805083 TCAATTTTTGGGGGATCTGAAAATA 57.195 32.000 0.00 0.00 31.70 1.40
263 264 6.700845 TCAATTTTTGGGGGATCTGAAAAT 57.299 33.333 0.00 0.00 32.89 1.82
264 265 6.506538 TTCAATTTTTGGGGGATCTGAAAA 57.493 33.333 0.00 0.00 0.00 2.29
265 266 6.506538 TTTCAATTTTTGGGGGATCTGAAA 57.493 33.333 0.00 0.00 31.13 2.69
266 267 6.295249 GTTTTCAATTTTTGGGGGATCTGAA 58.705 36.000 0.00 0.00 0.00 3.02
267 268 5.510520 CGTTTTCAATTTTTGGGGGATCTGA 60.511 40.000 0.00 0.00 0.00 3.27
268 269 4.690280 CGTTTTCAATTTTTGGGGGATCTG 59.310 41.667 0.00 0.00 0.00 2.90
269 270 4.346709 ACGTTTTCAATTTTTGGGGGATCT 59.653 37.500 0.00 0.00 0.00 2.75
270 271 4.637276 ACGTTTTCAATTTTTGGGGGATC 58.363 39.130 0.00 0.00 0.00 3.36
271 272 4.698201 ACGTTTTCAATTTTTGGGGGAT 57.302 36.364 0.00 0.00 0.00 3.85
272 273 5.810080 ATACGTTTTCAATTTTTGGGGGA 57.190 34.783 0.00 0.00 0.00 4.81
273 274 5.760743 ACAATACGTTTTCAATTTTTGGGGG 59.239 36.000 0.00 0.00 0.00 5.40
274 275 6.852858 ACAATACGTTTTCAATTTTTGGGG 57.147 33.333 0.00 0.00 0.00 4.96
375 376 9.471084 TTCCGATTTTTCTTTTTCCTGTTTATC 57.529 29.630 0.00 0.00 0.00 1.75
388 389 8.554835 TTTGGTTTTCTTTTCCGATTTTTCTT 57.445 26.923 0.00 0.00 0.00 2.52
395 396 7.778083 ACTAGTTTTTGGTTTTCTTTTCCGAT 58.222 30.769 0.00 0.00 0.00 4.18
397 398 8.914328 TTACTAGTTTTTGGTTTTCTTTTCCG 57.086 30.769 0.00 0.00 0.00 4.30
454 455 1.546923 CCCATGCATGTTGCTTCTTCA 59.453 47.619 24.58 0.00 45.31 3.02
464 465 2.389449 CCCCTCTCCCCATGCATGT 61.389 63.158 24.58 0.00 0.00 3.21
476 477 4.733725 TTGCCCGGCTACCCCTCT 62.734 66.667 11.61 0.00 0.00 3.69
477 478 4.484872 GTTGCCCGGCTACCCCTC 62.485 72.222 12.50 0.00 0.00 4.30
483 484 0.538516 ATTGTTGTGTTGCCCGGCTA 60.539 50.000 11.61 0.00 0.00 3.93
492 493 4.405358 ACAATCCTCACCAATTGTTGTGTT 59.595 37.500 12.67 0.60 42.00 3.32
499 500 3.244146 TGCCAAACAATCCTCACCAATTG 60.244 43.478 0.00 0.00 38.54 2.32
503 504 1.144708 TCTGCCAAACAATCCTCACCA 59.855 47.619 0.00 0.00 0.00 4.17
523 524 3.073735 CAGCTGCCCGACCTCTCT 61.074 66.667 0.00 0.00 0.00 3.10
524 525 4.154347 CCAGCTGCCCGACCTCTC 62.154 72.222 8.66 0.00 0.00 3.20
560 562 7.276438 CGACTTCATCAATCTCAAGATGTTGTA 59.724 37.037 2.11 0.00 41.74 2.41
562 564 6.091849 ACGACTTCATCAATCTCAAGATGTTG 59.908 38.462 0.00 0.00 41.74 3.33
568 570 4.925646 TGTGACGACTTCATCAATCTCAAG 59.074 41.667 0.00 0.00 36.32 3.02
592 594 5.070862 CGTTATGTTGACTACAAAAGCGTC 58.929 41.667 0.00 0.00 40.89 5.19
595 597 5.379827 GGACGTTATGTTGACTACAAAAGC 58.620 41.667 0.00 0.00 40.89 3.51
607 609 0.252197 GCAGGAGGGGACGTTATGTT 59.748 55.000 0.00 0.00 0.00 2.71
610 612 2.169978 GTTTAGCAGGAGGGGACGTTAT 59.830 50.000 0.00 0.00 0.00 1.89
611 613 1.551883 GTTTAGCAGGAGGGGACGTTA 59.448 52.381 0.00 0.00 0.00 3.18
618 620 1.280457 ACTCAGGTTTAGCAGGAGGG 58.720 55.000 0.00 0.00 0.00 4.30
633 635 1.001974 CCTCGTGGTGGAATCAACTCA 59.998 52.381 0.00 0.00 0.00 3.41
634 636 1.275291 TCCTCGTGGTGGAATCAACTC 59.725 52.381 2.99 0.00 34.23 3.01
635 637 1.348064 TCCTCGTGGTGGAATCAACT 58.652 50.000 2.99 0.00 34.23 3.16
636 638 2.178912 TTCCTCGTGGTGGAATCAAC 57.821 50.000 2.99 0.00 38.53 3.18
641 643 2.289819 GGTTACATTCCTCGTGGTGGAA 60.290 50.000 2.99 4.17 46.16 3.53
642 644 1.276989 GGTTACATTCCTCGTGGTGGA 59.723 52.381 2.99 0.00 34.23 4.02
643 645 1.002659 TGGTTACATTCCTCGTGGTGG 59.997 52.381 2.99 0.00 34.23 4.61
644 646 2.465860 TGGTTACATTCCTCGTGGTG 57.534 50.000 2.99 0.00 34.23 4.17
645 647 2.838202 AGATGGTTACATTCCTCGTGGT 59.162 45.455 2.99 0.00 37.47 4.16
646 648 3.458189 GAGATGGTTACATTCCTCGTGG 58.542 50.000 0.00 0.00 37.47 4.94
647 649 3.458189 GGAGATGGTTACATTCCTCGTG 58.542 50.000 0.00 0.00 37.47 4.35
648 650 2.434702 GGGAGATGGTTACATTCCTCGT 59.565 50.000 0.00 0.00 37.47 4.18
649 651 2.224305 GGGGAGATGGTTACATTCCTCG 60.224 54.545 0.00 0.00 37.47 4.63
650 652 2.224305 CGGGGAGATGGTTACATTCCTC 60.224 54.545 0.00 0.00 37.47 3.71
651 653 1.768870 CGGGGAGATGGTTACATTCCT 59.231 52.381 0.00 0.00 37.47 3.36
652 654 1.814248 GCGGGGAGATGGTTACATTCC 60.814 57.143 0.00 0.00 37.47 3.01
712 718 7.466320 GCCTTGTTTCCATTGCAATTTATCATC 60.466 37.037 9.83 0.00 0.00 2.92
776 783 9.273016 CAACTCTATTATGTCGGGTAAATTGAT 57.727 33.333 0.00 0.00 0.00 2.57
820 828 4.785453 CTTGTGCGGGGAGGAGGC 62.785 72.222 0.00 0.00 0.00 4.70
848 875 3.983344 GGCAGAAATACTGTTTGTGCTTG 59.017 43.478 16.56 0.00 44.80 4.01
849 876 3.636300 TGGCAGAAATACTGTTTGTGCTT 59.364 39.130 16.56 0.00 44.80 3.91
850 877 3.221771 TGGCAGAAATACTGTTTGTGCT 58.778 40.909 16.56 0.00 44.80 4.40
851 878 7.174440 TTTTCTGGCAGAAATACTGTTTGTGC 61.174 38.462 35.58 10.78 43.06 4.57
852 879 6.198966 GTTTTCTGGCAGAAATACTGTTTGTG 59.801 38.462 35.58 0.00 43.06 3.33
853 880 6.127479 TGTTTTCTGGCAGAAATACTGTTTGT 60.127 34.615 35.58 0.00 43.06 2.83
854 881 6.272318 TGTTTTCTGGCAGAAATACTGTTTG 58.728 36.000 35.58 0.00 43.06 2.93
855 882 6.463995 TGTTTTCTGGCAGAAATACTGTTT 57.536 33.333 35.58 0.00 43.06 2.83
856 883 6.273071 GTTGTTTTCTGGCAGAAATACTGTT 58.727 36.000 35.58 0.00 43.06 3.16
857 884 5.505654 CGTTGTTTTCTGGCAGAAATACTGT 60.506 40.000 35.58 0.00 43.06 3.55
858 885 4.911610 CGTTGTTTTCTGGCAGAAATACTG 59.088 41.667 35.58 24.01 43.06 2.74
859 886 4.578928 ACGTTGTTTTCTGGCAGAAATACT 59.421 37.500 35.58 21.10 43.06 2.12
860 887 4.855531 ACGTTGTTTTCTGGCAGAAATAC 58.144 39.130 35.58 31.45 43.06 1.89
861 888 4.023536 GGACGTTGTTTTCTGGCAGAAATA 60.024 41.667 35.58 26.21 43.06 1.40
862 889 3.243401 GGACGTTGTTTTCTGGCAGAAAT 60.243 43.478 35.58 23.28 43.06 2.17
863 890 2.098443 GGACGTTGTTTTCTGGCAGAAA 59.902 45.455 32.85 32.85 42.00 2.52
864 891 1.673920 GGACGTTGTTTTCTGGCAGAA 59.326 47.619 25.38 25.38 31.28 3.02
865 892 1.305201 GGACGTTGTTTTCTGGCAGA 58.695 50.000 14.43 14.43 0.00 4.26
866 893 0.310854 GGGACGTTGTTTTCTGGCAG 59.689 55.000 8.58 8.58 0.00 4.85
1852 1887 4.706476 TGGGAAAATGATGTGGAATGAGTC 59.294 41.667 0.00 0.00 0.00 3.36
1855 1890 3.768757 GGTGGGAAAATGATGTGGAATGA 59.231 43.478 0.00 0.00 0.00 2.57
2104 2143 6.817140 ACGCTCTTATAAAAGTTTACAGAGGG 59.183 38.462 22.31 22.31 43.34 4.30
2114 2153 9.654663 AGATCACTAAAACGCTCTTATAAAAGT 57.345 29.630 0.00 0.00 34.13 2.66
2119 2158 9.229784 CGTTTAGATCACTAAAACGCTCTTATA 57.770 33.333 16.74 0.00 45.97 0.98
2120 2159 8.116624 CGTTTAGATCACTAAAACGCTCTTAT 57.883 34.615 16.74 0.00 45.97 1.73
2121 2160 7.502177 CGTTTAGATCACTAAAACGCTCTTA 57.498 36.000 16.74 0.00 45.97 2.10
2122 2161 6.390987 CGTTTAGATCACTAAAACGCTCTT 57.609 37.500 16.74 0.00 45.97 2.85
2127 2166 6.390987 AAGAGCGTTTAGATCACTAAAACG 57.609 37.500 21.13 21.13 45.97 3.60
2141 2180 9.998106 ACTGGTAATAATCATATAAGAGCGTTT 57.002 29.630 0.00 0.00 0.00 3.60
2142 2181 9.998106 AACTGGTAATAATCATATAAGAGCGTT 57.002 29.630 0.00 0.00 0.00 4.84
2143 2182 9.998106 AAACTGGTAATAATCATATAAGAGCGT 57.002 29.630 0.00 0.00 0.00 5.07
2149 2188 9.515226 GGCTGGAAACTGGTAATAATCATATAA 57.485 33.333 0.00 0.00 0.00 0.98
2150 2189 8.107095 GGGCTGGAAACTGGTAATAATCATATA 58.893 37.037 0.00 0.00 0.00 0.86
2151 2190 6.948309 GGGCTGGAAACTGGTAATAATCATAT 59.052 38.462 0.00 0.00 0.00 1.78
2152 2191 6.126332 TGGGCTGGAAACTGGTAATAATCATA 60.126 38.462 0.00 0.00 0.00 2.15
2167 2206 0.263172 TTTTGGGTCTGGGCTGGAAA 59.737 50.000 0.00 0.00 0.00 3.13
2170 2209 1.607467 CCTTTTGGGTCTGGGCTGG 60.607 63.158 0.00 0.00 35.46 4.85
2194 2233 2.821378 TCACGGTAGTTCCATTTCTCGA 59.179 45.455 0.00 0.00 35.57 4.04
2199 2238 7.513371 TTAATTGTTCACGGTAGTTCCATTT 57.487 32.000 0.00 0.00 35.57 2.32
2245 2284 6.649141 TGCAAATGACTGTCGTTTTAGTATCT 59.351 34.615 21.93 0.11 33.65 1.98
2289 2328 6.549736 TCTGAATCTGAATAACCGGATCACTA 59.450 38.462 9.46 0.00 31.30 2.74
2294 2333 8.408601 CAAAATTCTGAATCTGAATAACCGGAT 58.591 33.333 9.46 0.00 33.02 4.18
2297 2336 6.473455 GCCAAAATTCTGAATCTGAATAACCG 59.527 38.462 14.30 5.93 33.02 4.44
2312 2351 8.962884 AAGTAATTGTCAAAAGCCAAAATTCT 57.037 26.923 0.00 0.00 0.00 2.40
2328 2367 6.209192 TGTGGCAGATCATTCAAAGTAATTGT 59.791 34.615 0.00 0.00 40.11 2.71
2349 2388 1.131883 GCTGCACTAAGAATGCTGTGG 59.868 52.381 0.00 0.00 43.77 4.17
2350 2389 1.808343 TGCTGCACTAAGAATGCTGTG 59.192 47.619 0.00 0.00 43.77 3.66
2351 2390 2.189594 TGCTGCACTAAGAATGCTGT 57.810 45.000 0.00 0.00 43.77 4.40
2352 2391 3.564235 TTTGCTGCACTAAGAATGCTG 57.436 42.857 0.00 0.00 43.77 4.41
2354 2393 5.461078 CCATATTTTGCTGCACTAAGAATGC 59.539 40.000 0.00 0.00 43.68 3.56
2355 2394 6.694411 GTCCATATTTTGCTGCACTAAGAATG 59.306 38.462 0.00 8.00 0.00 2.67
2356 2395 6.377996 TGTCCATATTTTGCTGCACTAAGAAT 59.622 34.615 0.00 1.12 0.00 2.40
2361 2572 5.009631 ACTTGTCCATATTTTGCTGCACTA 58.990 37.500 0.00 0.00 0.00 2.74
2374 2585 3.017442 CTCAGACTCGGACTTGTCCATA 58.983 50.000 18.51 6.21 34.02 2.74
2377 2588 1.249407 ACTCAGACTCGGACTTGTCC 58.751 55.000 9.62 9.62 34.02 4.02
2380 2591 4.255301 AGTAGTACTCAGACTCGGACTTG 58.745 47.826 0.00 0.00 0.00 3.16
2399 2610 5.394663 GCTTCAGACTCAGCCTAATGAAGTA 60.395 44.000 12.70 0.00 43.42 2.24
2418 2629 3.485394 TGGCAATTCAGTACAAGCTTCA 58.515 40.909 0.00 0.00 0.00 3.02
2422 2633 4.741676 GCAATATGGCAATTCAGTACAAGC 59.258 41.667 0.00 0.00 0.00 4.01
2437 2648 4.160065 TGTGGAAATGTTGGAGCAATATGG 59.840 41.667 0.00 0.00 0.00 2.74
2472 2683 1.226773 GTTCATCAATGGCCGCTGC 60.227 57.895 0.00 0.00 0.00 5.25
2509 2721 9.887629 AAAATGTATTTATGCATCCAACATTCA 57.112 25.926 20.64 7.31 35.61 2.57
2565 2777 1.815003 GCTACAAGCATGCTTTGTCCT 59.185 47.619 30.07 12.39 41.89 3.85
2569 2781 2.273370 CAGGCTACAAGCATGCTTTG 57.727 50.000 30.07 24.65 46.23 2.77
2582 2794 5.693769 ATCTTTTACAACCTAGCAGGCTA 57.306 39.130 0.49 0.49 39.63 3.93
2610 2822 2.224281 TGTACCTCACCAAGCACAGAAG 60.224 50.000 0.00 0.00 0.00 2.85
2618 2830 1.453155 GCCACATGTACCTCACCAAG 58.547 55.000 0.00 0.00 0.00 3.61
2632 2844 3.880040 CATCACCTATGTGGCCACA 57.120 52.632 39.23 39.23 46.44 4.17
2917 3223 2.202932 ATAGCTCCCGCTTGCACG 60.203 61.111 0.00 0.00 46.47 5.34
2919 3225 1.450134 CACATAGCTCCCGCTTGCA 60.450 57.895 0.00 0.00 46.47 4.08
2979 3292 4.764172 AGCAGATCCAACTCAACTATCAC 58.236 43.478 0.00 0.00 0.00 3.06
2990 3303 0.964358 AGCAGGCAAGCAGATCCAAC 60.964 55.000 4.78 0.00 36.85 3.77
3015 3328 7.404671 TCATTAGAAAAATAAACAGGGAGGC 57.595 36.000 0.00 0.00 0.00 4.70
3020 3333 7.223387 GCAGGCATCATTAGAAAAATAAACAGG 59.777 37.037 0.00 0.00 0.00 4.00
3048 3361 5.570589 GCACATGCTAATCAGAGAAACAAAC 59.429 40.000 0.00 0.00 38.21 2.93
3070 3383 4.153475 GCAAAGTTAGGAAATGTAGACGCA 59.847 41.667 0.00 0.00 0.00 5.24
3079 3392 4.652822 AGTCCGAAGCAAAGTTAGGAAAT 58.347 39.130 0.00 0.00 33.53 2.17
3112 3425 0.322098 CATAGGTCCCGTTTGCCACA 60.322 55.000 0.00 0.00 0.00 4.17
3136 3449 4.682778 TTCTACACAGTTACCAGCAGTT 57.317 40.909 0.00 0.00 0.00 3.16
3154 3467 2.362120 GGCCCACAGCTGCATTCT 60.362 61.111 15.27 0.00 43.05 2.40
3212 3525 9.639601 TCACTTCAGTAATCAGTAATACAACTG 57.360 33.333 0.00 0.00 46.78 3.16
3219 3532 9.429359 CTGAAACTCACTTCAGTAATCAGTAAT 57.571 33.333 5.38 0.00 44.86 1.89
3220 3533 8.818141 CTGAAACTCACTTCAGTAATCAGTAA 57.182 34.615 5.38 0.00 44.86 2.24
3263 3576 1.529152 TACAGACTGCGCGGGAAGAA 61.529 55.000 22.44 0.00 0.00 2.52
3402 3715 2.268298 CGTTAACGAAGCCAGCATAGT 58.732 47.619 23.35 0.00 43.02 2.12
3460 3773 9.898152 TGAACAAAGATTATTTGGGTTTTTCTT 57.102 25.926 8.49 0.00 33.92 2.52
3461 3774 9.546428 CTGAACAAAGATTATTTGGGTTTTTCT 57.454 29.630 8.49 0.00 33.92 2.52
3462 3775 8.282592 GCTGAACAAAGATTATTTGGGTTTTTC 58.717 33.333 8.49 3.69 33.92 2.29
3463 3776 7.992608 AGCTGAACAAAGATTATTTGGGTTTTT 59.007 29.630 8.49 0.00 33.92 1.94
3464 3777 7.508687 AGCTGAACAAAGATTATTTGGGTTTT 58.491 30.769 8.49 0.00 33.92 2.43
3465 3778 7.066307 AGCTGAACAAAGATTATTTGGGTTT 57.934 32.000 8.49 0.00 33.92 3.27
3468 3781 6.928520 AGAAGCTGAACAAAGATTATTTGGG 58.071 36.000 8.49 0.00 33.92 4.12
3705 4018 7.069826 CCAAAGAAGGCCTTAATGATATTTCCA 59.930 37.037 20.54 0.00 34.00 3.53
3760 4073 9.634021 GGAATTTTTCCTATAGAAATCCTGTCT 57.366 33.333 0.00 0.00 46.57 3.41
3777 4090 6.464222 CCAAAGGGGTCTAAAGGAATTTTTC 58.536 40.000 0.00 0.00 0.00 2.29
3778 4091 6.433847 CCAAAGGGGTCTAAAGGAATTTTT 57.566 37.500 0.00 0.00 0.00 1.94
3899 4228 6.376248 AGATGCCCTTTGGTTCACATAATAT 58.624 36.000 0.00 0.00 0.00 1.28
3903 4232 3.620488 GAGATGCCCTTTGGTTCACATA 58.380 45.455 0.00 0.00 0.00 2.29
4107 4437 8.906867 CACCTGATTTTCCATTGTTCTATGTAT 58.093 33.333 0.00 0.00 0.00 2.29
4208 4541 6.472887 AGGTCGAAGTTGATCCTGAATTTAA 58.527 36.000 0.00 0.00 0.00 1.52
4228 4561 5.359194 TCTTGTATCTTGGGAATGAGGTC 57.641 43.478 0.00 0.00 0.00 3.85
4237 4570 5.278660 GCATATGCCTTTCTTGTATCTTGGG 60.279 44.000 17.26 0.00 34.31 4.12
4391 4724 0.804933 GGTACGAGTCGTGGATTGCC 60.805 60.000 27.85 14.93 41.39 4.52
4421 4754 3.322466 CCAGGTCCTGGCGAAGGT 61.322 66.667 25.31 0.00 45.13 3.50
4453 4786 2.125912 CAGACGAGCCGGGAACAG 60.126 66.667 2.18 0.00 0.00 3.16
4463 4796 2.888863 GCTCCAGGGTCAGACGAG 59.111 66.667 0.00 0.00 0.00 4.18
4653 4986 0.884514 GAGGAGCCAGAAAACCTTGC 59.115 55.000 0.00 0.00 34.01 4.01
4665 4998 1.220477 GGTGAGCAAGAGAGGAGCC 59.780 63.158 0.00 0.00 0.00 4.70
4764 5102 5.186996 TCTGATGAGCCAAAAACTTCAAC 57.813 39.130 0.00 0.00 0.00 3.18
4774 5112 3.102204 TGACTGAGATCTGATGAGCCAA 58.898 45.455 0.00 0.00 0.00 4.52
4778 5116 7.888424 AGATATGTTGACTGAGATCTGATGAG 58.112 38.462 0.00 0.00 0.00 2.90
4819 5157 9.202273 CCATTTAATGAGTTTGATTTCGGAAAA 57.798 29.630 7.33 0.00 0.00 2.29
4822 5167 6.071672 TGCCATTTAATGAGTTTGATTTCGGA 60.072 34.615 6.50 0.00 0.00 4.55
4829 5174 7.523293 TTCTTCTGCCATTTAATGAGTTTGA 57.477 32.000 6.50 0.00 0.00 2.69
4855 5200 1.068741 AGCGACGGACTTGTCTTCTTT 59.931 47.619 0.00 0.00 36.71 2.52
4859 5204 0.318784 GTCAGCGACGGACTTGTCTT 60.319 55.000 0.00 0.00 36.71 3.01
4861 5206 0.596600 TTGTCAGCGACGGACTTGTC 60.597 55.000 0.00 0.00 34.95 3.18
4862 5207 0.597637 CTTGTCAGCGACGGACTTGT 60.598 55.000 0.00 0.00 34.95 3.16
4863 5208 1.284982 CCTTGTCAGCGACGGACTTG 61.285 60.000 0.00 4.77 34.95 3.16
4864 5209 1.006102 CCTTGTCAGCGACGGACTT 60.006 57.895 0.00 0.00 34.95 3.01
4866 5211 0.599204 TTTCCTTGTCAGCGACGGAC 60.599 55.000 0.00 0.00 34.95 4.79
4867 5212 0.320374 ATTTCCTTGTCAGCGACGGA 59.680 50.000 0.00 3.66 34.95 4.69
4868 5213 1.135972 CAATTTCCTTGTCAGCGACGG 60.136 52.381 0.00 1.70 34.95 4.79
4869 5214 1.135972 CCAATTTCCTTGTCAGCGACG 60.136 52.381 0.00 0.00 34.95 5.12
4870 5215 1.200020 CCCAATTTCCTTGTCAGCGAC 59.800 52.381 0.00 2.32 32.61 5.19
4871 5216 1.533625 CCCAATTTCCTTGTCAGCGA 58.466 50.000 0.00 0.00 32.61 4.93
4872 5217 0.109132 GCCCAATTTCCTTGTCAGCG 60.109 55.000 0.00 0.00 32.61 5.18
4873 5218 1.260544 AGCCCAATTTCCTTGTCAGC 58.739 50.000 0.00 0.00 32.61 4.26
4874 5219 4.082125 ACTTAGCCCAATTTCCTTGTCAG 58.918 43.478 0.00 0.00 32.61 3.51
4875 5220 4.112634 ACTTAGCCCAATTTCCTTGTCA 57.887 40.909 0.00 0.00 32.61 3.58
4876 5221 4.522789 TGAACTTAGCCCAATTTCCTTGTC 59.477 41.667 0.00 0.00 32.61 3.18
4877 5222 4.280929 GTGAACTTAGCCCAATTTCCTTGT 59.719 41.667 0.00 0.00 32.61 3.16
4878 5223 4.280677 TGTGAACTTAGCCCAATTTCCTTG 59.719 41.667 0.00 0.00 34.42 3.61
4879 5224 4.479158 TGTGAACTTAGCCCAATTTCCTT 58.521 39.130 0.00 0.00 0.00 3.36
4880 5225 4.082125 CTGTGAACTTAGCCCAATTTCCT 58.918 43.478 0.00 0.00 0.00 3.36
4881 5226 3.193479 CCTGTGAACTTAGCCCAATTTCC 59.807 47.826 0.00 0.00 0.00 3.13
4882 5227 3.193479 CCCTGTGAACTTAGCCCAATTTC 59.807 47.826 0.00 0.00 0.00 2.17
4883 5228 3.165071 CCCTGTGAACTTAGCCCAATTT 58.835 45.455 0.00 0.00 0.00 1.82
4884 5229 2.378547 TCCCTGTGAACTTAGCCCAATT 59.621 45.455 0.00 0.00 0.00 2.32
4885 5230 1.992557 TCCCTGTGAACTTAGCCCAAT 59.007 47.619 0.00 0.00 0.00 3.16
4886 5231 1.351017 CTCCCTGTGAACTTAGCCCAA 59.649 52.381 0.00 0.00 0.00 4.12
4887 5232 0.984230 CTCCCTGTGAACTTAGCCCA 59.016 55.000 0.00 0.00 0.00 5.36
4888 5233 0.393132 GCTCCCTGTGAACTTAGCCC 60.393 60.000 0.00 0.00 0.00 5.19
4889 5234 0.324943 TGCTCCCTGTGAACTTAGCC 59.675 55.000 0.00 0.00 0.00 3.93
4890 5235 2.093235 AGATGCTCCCTGTGAACTTAGC 60.093 50.000 0.00 0.00 0.00 3.09
4891 5236 3.902881 AGATGCTCCCTGTGAACTTAG 57.097 47.619 0.00 0.00 0.00 2.18
4892 5237 8.170730 TCTATATAGATGCTCCCTGTGAACTTA 58.829 37.037 8.44 0.00 0.00 2.24
4893 5238 7.013220 TCTATATAGATGCTCCCTGTGAACTT 58.987 38.462 8.44 0.00 0.00 2.66
4894 5239 6.435904 GTCTATATAGATGCTCCCTGTGAACT 59.564 42.308 15.43 0.00 34.39 3.01
4895 5240 6.350612 GGTCTATATAGATGCTCCCTGTGAAC 60.351 46.154 15.43 0.00 34.39 3.18
4896 5241 5.717178 GGTCTATATAGATGCTCCCTGTGAA 59.283 44.000 15.43 0.00 34.39 3.18
4897 5242 5.015710 AGGTCTATATAGATGCTCCCTGTGA 59.984 44.000 15.43 0.00 34.39 3.58
4898 5243 5.268387 AGGTCTATATAGATGCTCCCTGTG 58.732 45.833 15.43 0.00 34.39 3.66
4899 5244 5.255207 AGAGGTCTATATAGATGCTCCCTGT 59.745 44.000 18.80 13.96 34.39 4.00
4900 5245 5.765510 AGAGGTCTATATAGATGCTCCCTG 58.234 45.833 18.80 0.00 34.39 4.45
4901 5246 6.416044 AAGAGGTCTATATAGATGCTCCCT 57.584 41.667 15.43 15.40 34.39 4.20
4902 5247 7.489239 AAAAGAGGTCTATATAGATGCTCCC 57.511 40.000 15.43 11.20 34.39 4.30
4936 5281 5.531287 ACTCGTCAACTATTTGCTCCTTTTT 59.469 36.000 0.00 0.00 32.17 1.94
4937 5282 5.049405 CACTCGTCAACTATTTGCTCCTTTT 60.049 40.000 0.00 0.00 32.17 2.27
4938 5283 4.452455 CACTCGTCAACTATTTGCTCCTTT 59.548 41.667 0.00 0.00 32.17 3.11
4939 5284 3.997021 CACTCGTCAACTATTTGCTCCTT 59.003 43.478 0.00 0.00 32.17 3.36
4940 5285 3.589988 CACTCGTCAACTATTTGCTCCT 58.410 45.455 0.00 0.00 32.17 3.69
4941 5286 2.094417 GCACTCGTCAACTATTTGCTCC 59.906 50.000 0.00 0.00 32.17 4.70
4942 5287 2.996621 AGCACTCGTCAACTATTTGCTC 59.003 45.455 0.00 0.00 33.63 4.26
4943 5288 2.996621 GAGCACTCGTCAACTATTTGCT 59.003 45.455 0.00 0.00 41.43 3.91
4944 5289 2.996621 AGAGCACTCGTCAACTATTTGC 59.003 45.455 0.00 0.00 31.62 3.68
4945 5290 5.177511 TGAAAGAGCACTCGTCAACTATTTG 59.822 40.000 5.05 0.00 34.09 2.32
4946 5291 5.297547 TGAAAGAGCACTCGTCAACTATTT 58.702 37.500 5.05 0.00 34.09 1.40
4947 5292 4.883083 TGAAAGAGCACTCGTCAACTATT 58.117 39.130 5.05 0.00 34.09 1.73
4948 5293 4.489810 CTGAAAGAGCACTCGTCAACTAT 58.510 43.478 8.00 0.00 34.07 2.12
4949 5294 3.305403 CCTGAAAGAGCACTCGTCAACTA 60.305 47.826 8.00 0.00 34.07 2.24
4950 5295 2.546795 CCTGAAAGAGCACTCGTCAACT 60.547 50.000 8.00 0.00 34.07 3.16
4951 5296 1.795286 CCTGAAAGAGCACTCGTCAAC 59.205 52.381 8.00 0.00 34.07 3.18
4952 5297 1.686587 TCCTGAAAGAGCACTCGTCAA 59.313 47.619 8.00 0.00 34.07 3.18
4953 5298 1.270826 CTCCTGAAAGAGCACTCGTCA 59.729 52.381 6.83 6.83 34.07 4.35
4954 5299 1.989430 CTCCTGAAAGAGCACTCGTC 58.011 55.000 0.00 0.00 34.07 4.20
4962 5307 3.131223 TCGTTATGAGGCTCCTGAAAGAG 59.869 47.826 12.86 0.00 34.07 2.85
4963 5308 3.096852 TCGTTATGAGGCTCCTGAAAGA 58.903 45.455 12.86 8.16 34.07 2.52
4964 5309 3.526931 TCGTTATGAGGCTCCTGAAAG 57.473 47.619 12.86 5.96 0.00 2.62
4965 5310 3.450817 TGATCGTTATGAGGCTCCTGAAA 59.549 43.478 12.86 0.00 0.00 2.69
4966 5311 3.031013 TGATCGTTATGAGGCTCCTGAA 58.969 45.455 12.86 0.16 0.00 3.02
4967 5312 2.362397 GTGATCGTTATGAGGCTCCTGA 59.638 50.000 12.86 2.99 0.00 3.86
4968 5313 2.363680 AGTGATCGTTATGAGGCTCCTG 59.636 50.000 12.86 0.00 0.00 3.86
4969 5314 2.672098 AGTGATCGTTATGAGGCTCCT 58.328 47.619 12.86 4.55 0.00 3.69
4978 5323 1.651987 CACCCGCAAGTGATCGTTAT 58.348 50.000 0.00 0.00 40.34 1.89
4979 5324 0.390603 CCACCCGCAAGTGATCGTTA 60.391 55.000 4.72 0.00 40.34 3.18
5022 5369 0.246360 CACCCAGAGCACGACACATA 59.754 55.000 0.00 0.00 0.00 2.29
5024 5371 2.421314 CACCCAGAGCACGACACA 59.579 61.111 0.00 0.00 0.00 3.72
5025 5372 3.044305 GCACCCAGAGCACGACAC 61.044 66.667 0.00 0.00 0.00 3.67
5058 5405 1.201332 GCCGAAAACGCGTACGAAA 59.799 52.632 26.10 0.00 43.93 3.46
5063 5410 3.599046 TTAAAAAGCCGAAAACGCGTA 57.401 38.095 14.46 0.00 0.00 4.42
5074 5421 7.843490 AAGTCAAAAGGAAGTTTAAAAAGCC 57.157 32.000 0.00 0.00 0.00 4.35
5084 5431 5.117406 AGACCAGAAAGTCAAAAGGAAGT 57.883 39.130 0.00 0.00 39.34 3.01
5086 5433 5.755849 AGAAGACCAGAAAGTCAAAAGGAA 58.244 37.500 0.00 0.00 39.34 3.36
5087 5434 5.131142 AGAGAAGACCAGAAAGTCAAAAGGA 59.869 40.000 0.00 0.00 39.34 3.36
5088 5435 5.372373 AGAGAAGACCAGAAAGTCAAAAGG 58.628 41.667 0.00 0.00 39.34 3.11
5089 5436 6.017523 GGAAGAGAAGACCAGAAAGTCAAAAG 60.018 42.308 0.00 0.00 39.34 2.27
5093 5453 4.227197 AGGAAGAGAAGACCAGAAAGTCA 58.773 43.478 0.00 0.00 39.34 3.41
5096 5456 5.046663 AGCTAAGGAAGAGAAGACCAGAAAG 60.047 44.000 0.00 0.00 0.00 2.62
5100 5460 4.817318 AAGCTAAGGAAGAGAAGACCAG 57.183 45.455 0.00 0.00 0.00 4.00
5105 5465 8.567285 TTTATCCAAAAGCTAAGGAAGAGAAG 57.433 34.615 5.88 0.00 34.62 2.85
5147 5515 5.347907 CCTCTCATGAAAGCAAAAGAAATGC 59.652 40.000 0.00 0.00 44.15 3.56
5149 5517 5.011329 TGCCTCTCATGAAAGCAAAAGAAAT 59.989 36.000 10.59 0.00 31.30 2.17
5153 5521 3.928727 TGCCTCTCATGAAAGCAAAAG 57.071 42.857 10.59 0.00 31.30 2.27
5164 5532 5.876460 GCAAAAATAAAACCATGCCTCTCAT 59.124 36.000 0.00 0.00 35.31 2.90
5166 5534 4.327087 CGCAAAAATAAAACCATGCCTCTC 59.673 41.667 0.00 0.00 0.00 3.20
5167 5535 4.021544 TCGCAAAAATAAAACCATGCCTCT 60.022 37.500 0.00 0.00 0.00 3.69
5169 5537 4.021544 TCTCGCAAAAATAAAACCATGCCT 60.022 37.500 0.00 0.00 0.00 4.75
5171 5539 4.327087 CCTCTCGCAAAAATAAAACCATGC 59.673 41.667 0.00 0.00 0.00 4.06
5172 5540 5.708948 TCCTCTCGCAAAAATAAAACCATG 58.291 37.500 0.00 0.00 0.00 3.66
5174 5542 5.067936 TGTTCCTCTCGCAAAAATAAAACCA 59.932 36.000 0.00 0.00 0.00 3.67
5176 5544 6.308041 GGATGTTCCTCTCGCAAAAATAAAAC 59.692 38.462 0.00 0.00 32.53 2.43
5181 5553 3.420893 TGGATGTTCCTCTCGCAAAAAT 58.579 40.909 0.00 0.00 37.46 1.82
5182 5554 2.857483 TGGATGTTCCTCTCGCAAAAA 58.143 42.857 0.00 0.00 37.46 1.94
5188 5560 0.539051 AGGCTTGGATGTTCCTCTCG 59.461 55.000 0.00 0.00 37.46 4.04
5252 5624 2.659757 CACTCACGCAAGCAAATTCATG 59.340 45.455 0.00 0.00 45.62 3.07
5253 5625 2.352030 CCACTCACGCAAGCAAATTCAT 60.352 45.455 0.00 0.00 45.62 2.57
5254 5626 1.001487 CCACTCACGCAAGCAAATTCA 60.001 47.619 0.00 0.00 45.62 2.57
5256 5628 0.318955 GCCACTCACGCAAGCAAATT 60.319 50.000 0.00 0.00 45.62 1.82
5257 5629 1.286880 GCCACTCACGCAAGCAAAT 59.713 52.632 0.00 0.00 45.62 2.32
5265 5642 1.919918 GCAAAATTATGCCACTCACGC 59.080 47.619 0.00 0.00 40.49 5.34
5277 5654 5.619757 CGTGCCTCTCATGAAAGCAAAATTA 60.620 40.000 13.72 0.00 34.62 1.40
5278 5655 4.563061 GTGCCTCTCATGAAAGCAAAATT 58.437 39.130 13.72 0.00 34.62 1.82
5279 5656 3.366679 CGTGCCTCTCATGAAAGCAAAAT 60.367 43.478 13.72 0.00 34.62 1.82
5291 5668 3.790691 TTTTTCACCGTGCCTCTCA 57.209 47.368 0.00 0.00 0.00 3.27
5327 5713 1.671742 GTGCCTCTCACGGAAGGAA 59.328 57.895 0.00 0.00 35.76 3.36
5336 5722 0.465460 AAGCAAAACCGTGCCTCTCA 60.465 50.000 0.00 0.00 46.14 3.27
5359 5745 3.044059 GCACAACCATGCCTCTCGC 62.044 63.158 0.00 0.00 39.86 5.03
5360 5746 3.181367 GCACAACCATGCCTCTCG 58.819 61.111 0.00 0.00 39.86 4.04
5369 5755 1.211703 TGTTTCTGAGAGGCACAACCA 59.788 47.619 0.00 0.00 43.14 3.67
5370 5756 1.967319 TGTTTCTGAGAGGCACAACC 58.033 50.000 0.00 0.00 39.61 3.77
5371 5757 4.370364 TTTTGTTTCTGAGAGGCACAAC 57.630 40.909 4.12 0.00 0.00 3.32
5423 5809 1.669211 GGTCGTTCCTCTCGTGAAAGG 60.669 57.143 0.00 0.00 0.00 3.11
5424 5810 1.699343 GGTCGTTCCTCTCGTGAAAG 58.301 55.000 0.00 0.00 0.00 2.62
5437 5823 2.952245 CCGAGAGACACGGTCGTT 59.048 61.111 0.00 0.00 44.57 3.85
5447 5833 3.585862 CATTTCTTCCGTTTCCGAGAGA 58.414 45.455 0.00 0.00 35.63 3.10
5449 5835 2.073816 GCATTTCTTCCGTTTCCGAGA 58.926 47.619 0.00 0.00 35.63 4.04
5451 5837 0.793861 CGCATTTCTTCCGTTTCCGA 59.206 50.000 0.00 0.00 35.63 4.55
5452 5838 0.793104 GCGCATTTCTTCCGTTTCCG 60.793 55.000 0.30 0.00 0.00 4.30
5458 5844 2.393764 ACAAAAAGCGCATTTCTTCCG 58.606 42.857 11.45 1.86 0.00 4.30
5459 5845 4.794248 AAACAAAAAGCGCATTTCTTCC 57.206 36.364 11.45 0.00 0.00 3.46
5502 5890 3.817709 CCTTTCAAGAAGGCAAAACCA 57.182 42.857 0.00 0.00 43.14 3.67
5511 5899 4.335874 CCTCTCATGATGCCTTTCAAGAAG 59.664 45.833 0.00 0.00 0.00 2.85
5515 5903 2.291089 TGCCTCTCATGATGCCTTTCAA 60.291 45.455 0.00 0.00 33.73 2.69
5516 5904 1.282738 TGCCTCTCATGATGCCTTTCA 59.717 47.619 0.00 0.00 33.73 2.69
5517 5905 1.674962 GTGCCTCTCATGATGCCTTTC 59.325 52.381 0.00 0.00 33.73 2.62
5518 5906 1.760192 GTGCCTCTCATGATGCCTTT 58.240 50.000 0.00 0.00 33.73 3.11
5519 5907 0.463295 CGTGCCTCTCATGATGCCTT 60.463 55.000 0.00 0.00 33.73 4.35
5520 5908 1.145598 CGTGCCTCTCATGATGCCT 59.854 57.895 0.00 0.00 33.73 4.75
5521 5909 1.890979 CCGTGCCTCTCATGATGCC 60.891 63.158 0.00 0.00 33.73 4.40
5522 5910 2.541120 GCCGTGCCTCTCATGATGC 61.541 63.158 0.00 0.08 33.49 3.91
5523 5911 1.890979 GGCCGTGCCTCTCATGATG 60.891 63.158 7.58 0.00 46.69 3.07
5524 5912 2.507944 GGCCGTGCCTCTCATGAT 59.492 61.111 7.58 0.00 46.69 2.45
5565 5953 1.757682 TCAACCGGAAGCACAGTTTT 58.242 45.000 9.46 0.00 0.00 2.43
5567 5955 1.608590 CAATCAACCGGAAGCACAGTT 59.391 47.619 9.46 0.00 0.00 3.16
5569 5957 1.238439 ACAATCAACCGGAAGCACAG 58.762 50.000 9.46 0.00 0.00 3.66
5570 5958 1.686355 AACAATCAACCGGAAGCACA 58.314 45.000 9.46 0.00 0.00 4.57
5571 5959 2.661594 GAAACAATCAACCGGAAGCAC 58.338 47.619 9.46 0.00 0.00 4.40
5573 5961 1.265905 ACGAAACAATCAACCGGAAGC 59.734 47.619 9.46 0.00 0.00 3.86
5577 5965 0.165079 CGGACGAAACAATCAACCGG 59.835 55.000 0.00 0.00 40.40 5.28
5578 5966 0.165079 CCGGACGAAACAATCAACCG 59.835 55.000 0.00 0.00 42.30 4.44
5579 5967 0.519961 CCCGGACGAAACAATCAACC 59.480 55.000 0.73 0.00 0.00 3.77
5580 5968 1.232119 ACCCGGACGAAACAATCAAC 58.768 50.000 0.73 0.00 0.00 3.18
5581 5969 1.970092 AACCCGGACGAAACAATCAA 58.030 45.000 0.73 0.00 0.00 2.57
5583 5971 3.358707 AAAAACCCGGACGAAACAATC 57.641 42.857 0.73 0.00 0.00 2.67
5640 6037 6.035112 GCGTCGAGATCTTCAAAACTAAATCT 59.965 38.462 0.00 0.00 0.00 2.40
5644 6041 4.552355 TGCGTCGAGATCTTCAAAACTAA 58.448 39.130 0.00 0.00 0.00 2.24
5666 6063 4.772100 ACCATTTTCATCGTTGGATTCCTT 59.228 37.500 3.95 0.00 33.36 3.36
5675 6072 5.124457 CAGATCTCCAACCATTTTCATCGTT 59.876 40.000 0.00 0.00 0.00 3.85
5679 6076 5.197224 TCCAGATCTCCAACCATTTTCAT 57.803 39.130 0.00 0.00 0.00 2.57
5686 6083 0.250234 CGCTTCCAGATCTCCAACCA 59.750 55.000 0.00 0.00 0.00 3.67
5691 6088 2.279784 CCGCGCTTCCAGATCTCC 60.280 66.667 5.56 0.00 0.00 3.71
5697 6094 0.721718 CTCTTAAACCGCGCTTCCAG 59.278 55.000 5.56 0.00 0.00 3.86
5702 6099 4.634443 ACATTTTATCTCTTAAACCGCGCT 59.366 37.500 5.56 0.00 29.47 5.92
5705 6102 8.736751 TCAAAACATTTTATCTCTTAAACCGC 57.263 30.769 0.00 0.00 29.47 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.