Multiple sequence alignment - TraesCS7B01G072800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G072800 chr7B 100.000 2694 0 0 1 2694 80710978 80708285 0.000000e+00 4975.0
1 TraesCS7B01G072800 chr7B 81.746 882 102 34 875 1728 80688863 80688013 0.000000e+00 682.0
2 TraesCS7B01G072800 chr7B 83.721 301 35 6 296 594 80689331 80689043 3.420000e-69 272.0
3 TraesCS7B01G072800 chr7B 79.545 176 14 7 2185 2360 80687607 80687454 3.670000e-19 106.0
4 TraesCS7B01G072800 chr7B 94.828 58 2 1 2492 2549 80687002 80686946 3.690000e-14 89.8
5 TraesCS7B01G072800 chr7D 94.187 1686 62 19 764 2429 119761559 119759890 0.000000e+00 2538.0
6 TraesCS7B01G072800 chr7D 80.870 1103 128 41 867 1939 119747682 119746633 0.000000e+00 791.0
7 TraesCS7B01G072800 chr7D 88.065 620 37 17 1 594 119768353 119767745 0.000000e+00 701.0
8 TraesCS7B01G072800 chr7D 94.483 145 7 1 2507 2651 119759891 119759748 3.490000e-54 222.0
9 TraesCS7B01G072800 chr7D 87.701 187 14 5 296 480 119748205 119748026 2.720000e-50 209.0
10 TraesCS7B01G072800 chr7D 87.273 165 17 2 594 754 332131686 332131522 4.580000e-43 185.0
11 TraesCS7B01G072800 chr7D 87.273 165 17 2 594 754 332865521 332865357 4.580000e-43 185.0
12 TraesCS7B01G072800 chr7D 85.475 179 19 3 4 177 119749346 119749170 2.130000e-41 180.0
13 TraesCS7B01G072800 chr7D 86.667 165 18 2 594 754 332172586 332172422 2.130000e-41 180.0
14 TraesCS7B01G072800 chr7D 86.747 166 16 3 594 754 332176207 332176043 2.130000e-41 180.0
15 TraesCS7B01G072800 chr7D 86.747 166 16 3 594 754 332180393 332180229 2.130000e-41 180.0
16 TraesCS7B01G072800 chr7D 86.747 166 16 3 594 754 332184583 332184419 2.130000e-41 180.0
17 TraesCS7B01G072800 chr7D 86.667 165 18 2 594 754 332880099 332879935 2.130000e-41 180.0
18 TraesCS7B01G072800 chr7D 85.714 105 7 5 2257 2361 119744300 119744204 1.320000e-18 104.0
19 TraesCS7B01G072800 chr7A 92.833 1451 63 22 748 2166 124410948 124409507 0.000000e+00 2065.0
20 TraesCS7B01G072800 chr7A 90.110 1638 69 34 748 2312 124457036 124455419 0.000000e+00 2041.0
21 TraesCS7B01G072800 chr7A 91.843 613 29 10 1 594 124457713 124457103 0.000000e+00 835.0
22 TraesCS7B01G072800 chr7A 88.657 432 29 9 35 448 124412284 124411855 2.390000e-140 508.0
23 TraesCS7B01G072800 chr7A 89.881 168 7 6 436 594 124411173 124411007 9.780000e-50 207.0
24 TraesCS7B01G072800 chr7A 87.135 171 18 2 588 754 375281663 375281493 9.840000e-45 191.0
25 TraesCS7B01G072800 chr7A 87.273 165 17 2 594 754 375419413 375419249 4.580000e-43 185.0
26 TraesCS7B01G072800 chr7A 83.200 125 9 6 2241 2361 124436246 124436130 1.320000e-18 104.0
27 TraesCS7B01G072800 chr7A 96.552 58 1 1 2492 2549 124434233 124434177 7.940000e-16 95.3
28 TraesCS7B01G072800 chr7A 96.226 53 2 0 747 799 124457077 124457025 1.330000e-13 87.9
29 TraesCS7B01G072800 chr7A 94.340 53 3 0 747 799 124410989 124410937 6.180000e-12 82.4
30 TraesCS7B01G072800 chr7A 91.379 58 4 1 2492 2549 124380139 124380083 8.000000e-11 78.7
31 TraesCS7B01G072800 chr6D 95.652 46 0 1 2432 2477 327349008 327348965 3.720000e-09 73.1
32 TraesCS7B01G072800 chr3D 95.652 46 0 1 2432 2477 436251458 436251415 3.720000e-09 73.1
33 TraesCS7B01G072800 chr5D 100.000 33 0 0 2432 2464 438434425 438434457 8.050000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G072800 chr7B 80708285 80710978 2693 True 4975.000000 4975 100.000000 1 2694 1 chr7B.!!$R1 2693
1 TraesCS7B01G072800 chr7B 80686946 80689331 2385 True 287.450000 682 84.960000 296 2549 4 chr7B.!!$R2 2253
2 TraesCS7B01G072800 chr7D 119759748 119761559 1811 True 1380.000000 2538 94.335000 764 2651 2 chr7D.!!$R8 1887
3 TraesCS7B01G072800 chr7D 119767745 119768353 608 True 701.000000 701 88.065000 1 594 1 chr7D.!!$R1 593
4 TraesCS7B01G072800 chr7D 119744204 119749346 5142 True 321.000000 791 84.940000 4 2361 4 chr7D.!!$R7 2357
5 TraesCS7B01G072800 chr7A 124455419 124457713 2294 True 987.966667 2041 92.726333 1 2312 3 chr7A.!!$R6 2311
6 TraesCS7B01G072800 chr7A 124409507 124412284 2777 True 715.600000 2065 91.427750 35 2166 4 chr7A.!!$R4 2131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 2273 0.033366 GCCGCCCTGAAATTTTGTGT 59.967 50.0 0.0 0.0 0.0 3.72 F
702 2335 0.114954 TGCCAGGAATGCCCTCTTTT 59.885 50.0 0.0 0.0 45.6 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 3382 1.450312 GGTCGATGCAGTCCTTGGG 60.450 63.158 0.0 0.0 0.0 4.12 R
2655 7078 1.007271 CGCGTGGATGGGTAGCTAG 60.007 63.158 0.0 0.0 0.0 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 6.276847 CACCTAAAATACTCGAGCATCTTCT 58.723 40.000 13.61 0.00 0.00 2.85
227 808 0.528249 GCAATGCCGCGGATCATTTT 60.528 50.000 33.48 7.59 31.15 1.82
269 860 1.379916 CAGGGTCCAAGGCACATGA 59.620 57.895 0.00 0.00 0.00 3.07
357 1231 0.249489 ATCGGCTCTGTGGTAATCGC 60.249 55.000 0.00 0.00 0.00 4.58
359 1233 1.523938 GGCTCTGTGGTAATCGCCC 60.524 63.158 0.00 0.00 0.00 6.13
433 1307 7.288810 TGAATCATGGCTAAAACAAAGAAGT 57.711 32.000 0.00 0.00 0.00 3.01
440 1314 5.235616 TGGCTAAAACAAAGAAGTACGTCAG 59.764 40.000 11.47 3.40 0.00 3.51
520 2143 5.530915 TCCTCAAATAATGGTAATTCTGGCG 59.469 40.000 0.00 0.00 0.00 5.69
594 2227 1.897560 CACCCACCAAAAGAGAGGAC 58.102 55.000 0.00 0.00 0.00 3.85
595 2228 1.421646 CACCCACCAAAAGAGAGGACT 59.578 52.381 0.00 0.00 0.00 3.85
596 2229 2.136026 ACCCACCAAAAGAGAGGACTT 58.864 47.619 0.00 0.00 0.00 3.01
597 2230 2.106684 ACCCACCAAAAGAGAGGACTTC 59.893 50.000 0.00 0.00 0.00 3.01
600 2233 4.401925 CCACCAAAAGAGAGGACTTCATT 58.598 43.478 0.00 0.00 0.00 2.57
601 2234 4.829492 CCACCAAAAGAGAGGACTTCATTT 59.171 41.667 0.00 0.00 0.00 2.32
602 2235 5.302823 CCACCAAAAGAGAGGACTTCATTTT 59.697 40.000 0.00 0.00 31.18 1.82
603 2236 6.442112 CACCAAAAGAGAGGACTTCATTTTC 58.558 40.000 0.00 0.00 29.61 2.29
604 2237 6.264067 CACCAAAAGAGAGGACTTCATTTTCT 59.736 38.462 0.00 0.00 29.61 2.52
605 2238 7.445402 CACCAAAAGAGAGGACTTCATTTTCTA 59.555 37.037 0.00 0.00 29.61 2.10
607 2240 7.663493 CCAAAAGAGAGGACTTCATTTTCTAGT 59.337 37.037 0.00 0.00 29.61 2.57
608 2241 8.502387 CAAAAGAGAGGACTTCATTTTCTAGTG 58.498 37.037 0.00 0.00 29.61 2.74
610 2243 6.930731 AGAGAGGACTTCATTTTCTAGTGAC 58.069 40.000 0.00 0.00 0.00 3.67
611 2244 5.715070 AGAGGACTTCATTTTCTAGTGACG 58.285 41.667 0.00 0.00 0.00 4.35
612 2245 4.246458 AGGACTTCATTTTCTAGTGACGC 58.754 43.478 0.00 0.00 0.00 5.19
613 2246 3.060895 GGACTTCATTTTCTAGTGACGCG 59.939 47.826 3.53 3.53 0.00 6.01
614 2247 3.650139 ACTTCATTTTCTAGTGACGCGT 58.350 40.909 13.85 13.85 0.00 6.01
615 2248 4.056050 ACTTCATTTTCTAGTGACGCGTT 58.944 39.130 15.53 0.00 0.00 4.84
616 2249 4.150098 ACTTCATTTTCTAGTGACGCGTTC 59.850 41.667 15.53 10.42 0.00 3.95
617 2250 3.909430 TCATTTTCTAGTGACGCGTTCT 58.091 40.909 15.53 17.55 0.00 3.01
618 2251 3.673338 TCATTTTCTAGTGACGCGTTCTG 59.327 43.478 15.53 10.14 0.00 3.02
619 2252 2.060326 TTTCTAGTGACGCGTTCTGG 57.940 50.000 15.53 16.87 0.00 3.86
620 2253 0.388134 TTCTAGTGACGCGTTCTGGC 60.388 55.000 15.53 0.00 0.00 4.85
635 2268 3.758931 GGCGCCGCCCTGAAATTT 61.759 61.111 19.58 0.00 44.06 1.82
636 2269 2.261361 GCGCCGCCCTGAAATTTT 59.739 55.556 0.00 0.00 0.00 1.82
637 2270 2.094066 GCGCCGCCCTGAAATTTTG 61.094 57.895 0.00 0.00 0.00 2.44
638 2271 1.288752 CGCCGCCCTGAAATTTTGT 59.711 52.632 0.00 0.00 0.00 2.83
639 2272 1.008361 CGCCGCCCTGAAATTTTGTG 61.008 55.000 0.00 0.00 0.00 3.33
640 2273 0.033366 GCCGCCCTGAAATTTTGTGT 59.967 50.000 0.00 0.00 0.00 3.72
641 2274 1.934849 GCCGCCCTGAAATTTTGTGTC 60.935 52.381 0.00 0.00 0.00 3.67
642 2275 1.336795 CCGCCCTGAAATTTTGTGTCC 60.337 52.381 0.00 0.00 0.00 4.02
643 2276 1.613437 CGCCCTGAAATTTTGTGTCCT 59.387 47.619 0.00 0.00 0.00 3.85
644 2277 2.351738 CGCCCTGAAATTTTGTGTCCTC 60.352 50.000 0.00 0.00 0.00 3.71
645 2278 2.351738 GCCCTGAAATTTTGTGTCCTCG 60.352 50.000 0.00 0.00 0.00 4.63
646 2279 3.146066 CCCTGAAATTTTGTGTCCTCGA 58.854 45.455 0.00 0.00 0.00 4.04
647 2280 3.758554 CCCTGAAATTTTGTGTCCTCGAT 59.241 43.478 0.00 0.00 0.00 3.59
648 2281 4.218417 CCCTGAAATTTTGTGTCCTCGATT 59.782 41.667 0.00 0.00 0.00 3.34
649 2282 5.156355 CCTGAAATTTTGTGTCCTCGATTG 58.844 41.667 0.00 0.00 0.00 2.67
650 2283 5.278463 CCTGAAATTTTGTGTCCTCGATTGT 60.278 40.000 0.00 0.00 0.00 2.71
651 2284 5.518812 TGAAATTTTGTGTCCTCGATTGTG 58.481 37.500 0.00 0.00 0.00 3.33
652 2285 5.298026 TGAAATTTTGTGTCCTCGATTGTGA 59.702 36.000 0.00 0.00 0.00 3.58
653 2286 5.766150 AATTTTGTGTCCTCGATTGTGAA 57.234 34.783 0.00 0.00 0.00 3.18
654 2287 4.811555 TTTTGTGTCCTCGATTGTGAAG 57.188 40.909 0.00 0.00 0.00 3.02
655 2288 3.744238 TTGTGTCCTCGATTGTGAAGA 57.256 42.857 0.00 0.00 0.00 2.87
656 2289 3.961480 TGTGTCCTCGATTGTGAAGAT 57.039 42.857 0.00 0.00 0.00 2.40
657 2290 3.588955 TGTGTCCTCGATTGTGAAGATG 58.411 45.455 0.00 0.00 0.00 2.90
658 2291 3.006859 TGTGTCCTCGATTGTGAAGATGT 59.993 43.478 0.00 0.00 0.00 3.06
659 2292 3.997021 GTGTCCTCGATTGTGAAGATGTT 59.003 43.478 0.00 0.00 0.00 2.71
660 2293 5.168569 GTGTCCTCGATTGTGAAGATGTTA 58.831 41.667 0.00 0.00 0.00 2.41
661 2294 5.812642 GTGTCCTCGATTGTGAAGATGTTAT 59.187 40.000 0.00 0.00 0.00 1.89
662 2295 6.313905 GTGTCCTCGATTGTGAAGATGTTATT 59.686 38.462 0.00 0.00 0.00 1.40
663 2296 6.878923 TGTCCTCGATTGTGAAGATGTTATTT 59.121 34.615 0.00 0.00 0.00 1.40
664 2297 7.064609 TGTCCTCGATTGTGAAGATGTTATTTC 59.935 37.037 0.00 0.00 0.00 2.17
665 2298 6.538742 TCCTCGATTGTGAAGATGTTATTTCC 59.461 38.462 0.00 0.00 0.00 3.13
666 2299 6.316140 CCTCGATTGTGAAGATGTTATTTCCA 59.684 38.462 0.00 0.00 0.00 3.53
667 2300 7.072177 TCGATTGTGAAGATGTTATTTCCAC 57.928 36.000 0.00 0.00 0.00 4.02
668 2301 6.652900 TCGATTGTGAAGATGTTATTTCCACA 59.347 34.615 0.00 0.00 0.00 4.17
669 2302 7.336679 TCGATTGTGAAGATGTTATTTCCACAT 59.663 33.333 0.00 0.00 37.58 3.21
670 2303 8.611757 CGATTGTGAAGATGTTATTTCCACATA 58.388 33.333 0.00 0.00 34.89 2.29
687 2320 9.531158 TTTCCACATATATATTGATCAATGCCA 57.469 29.630 27.59 14.25 32.50 4.92
688 2321 8.741603 TCCACATATATATTGATCAATGCCAG 57.258 34.615 27.59 15.50 32.50 4.85
689 2322 7.776500 TCCACATATATATTGATCAATGCCAGG 59.224 37.037 27.59 17.64 32.50 4.45
690 2323 7.776500 CCACATATATATTGATCAATGCCAGGA 59.224 37.037 27.59 9.70 32.50 3.86
691 2324 9.181061 CACATATATATTGATCAATGCCAGGAA 57.819 33.333 27.59 9.00 32.50 3.36
692 2325 9.931698 ACATATATATTGATCAATGCCAGGAAT 57.068 29.630 27.59 15.00 32.50 3.01
694 2327 3.746045 ATTGATCAATGCCAGGAATGC 57.254 42.857 20.11 0.00 0.00 3.56
695 2328 1.405872 TGATCAATGCCAGGAATGCC 58.594 50.000 0.00 0.00 0.00 4.40
696 2329 0.677842 GATCAATGCCAGGAATGCCC 59.322 55.000 0.00 0.00 33.31 5.36
697 2330 7.704730 TATTGATCAATGCCAGGAATGCCCT 62.705 44.000 27.59 2.09 37.75 5.19
698 2331 0.396139 TCAATGCCAGGAATGCCCTC 60.396 55.000 0.00 0.00 45.60 4.30
699 2332 0.396695 CAATGCCAGGAATGCCCTCT 60.397 55.000 0.00 0.00 45.60 3.69
700 2333 0.337428 AATGCCAGGAATGCCCTCTT 59.663 50.000 0.00 0.00 45.60 2.85
701 2334 0.337428 ATGCCAGGAATGCCCTCTTT 59.663 50.000 0.00 0.00 45.60 2.52
702 2335 0.114954 TGCCAGGAATGCCCTCTTTT 59.885 50.000 0.00 0.00 45.60 2.27
703 2336 1.269958 GCCAGGAATGCCCTCTTTTT 58.730 50.000 0.00 0.00 45.60 1.94
704 2337 1.205655 GCCAGGAATGCCCTCTTTTTC 59.794 52.381 0.00 0.00 45.60 2.29
705 2338 2.812658 CCAGGAATGCCCTCTTTTTCT 58.187 47.619 0.00 0.00 45.60 2.52
706 2339 3.168292 CCAGGAATGCCCTCTTTTTCTT 58.832 45.455 0.00 0.00 45.60 2.52
707 2340 3.056322 CCAGGAATGCCCTCTTTTTCTTG 60.056 47.826 0.00 0.00 45.60 3.02
708 2341 3.056322 CAGGAATGCCCTCTTTTTCTTGG 60.056 47.826 0.00 0.00 45.60 3.61
709 2342 2.354103 GGAATGCCCTCTTTTTCTTGGC 60.354 50.000 0.00 0.00 42.49 4.52
710 2343 1.269958 ATGCCCTCTTTTTCTTGGCC 58.730 50.000 0.00 0.00 41.46 5.36
711 2344 1.178534 TGCCCTCTTTTTCTTGGCCG 61.179 55.000 0.00 0.00 41.46 6.13
712 2345 1.179174 GCCCTCTTTTTCTTGGCCGT 61.179 55.000 0.00 0.00 36.07 5.68
713 2346 0.881796 CCCTCTTTTTCTTGGCCGTC 59.118 55.000 0.00 0.00 0.00 4.79
714 2347 1.604604 CCTCTTTTTCTTGGCCGTCA 58.395 50.000 0.00 0.00 0.00 4.35
715 2348 1.266989 CCTCTTTTTCTTGGCCGTCAC 59.733 52.381 0.00 0.00 0.00 3.67
716 2349 1.946768 CTCTTTTTCTTGGCCGTCACA 59.053 47.619 0.00 0.00 0.00 3.58
717 2350 1.673920 TCTTTTTCTTGGCCGTCACAC 59.326 47.619 0.00 0.00 0.00 3.82
718 2351 1.403679 CTTTTTCTTGGCCGTCACACA 59.596 47.619 0.00 0.00 0.00 3.72
719 2352 1.686355 TTTTCTTGGCCGTCACACAT 58.314 45.000 0.00 0.00 0.00 3.21
720 2353 2.552599 TTTCTTGGCCGTCACACATA 57.447 45.000 0.00 0.00 0.00 2.29
721 2354 1.803334 TTCTTGGCCGTCACACATAC 58.197 50.000 0.00 0.00 0.00 2.39
722 2355 0.389296 TCTTGGCCGTCACACATACG 60.389 55.000 0.00 0.00 40.01 3.06
723 2356 0.389296 CTTGGCCGTCACACATACGA 60.389 55.000 0.00 0.00 42.90 3.43
724 2357 0.248012 TTGGCCGTCACACATACGAT 59.752 50.000 0.00 0.00 42.90 3.73
725 2358 1.104630 TGGCCGTCACACATACGATA 58.895 50.000 0.00 0.00 42.90 2.92
726 2359 1.202325 TGGCCGTCACACATACGATAC 60.202 52.381 0.00 0.00 42.90 2.24
727 2360 1.118033 GCCGTCACACATACGATACG 58.882 55.000 0.00 0.00 42.90 3.06
728 2361 1.750351 CCGTCACACATACGATACGG 58.250 55.000 0.00 0.00 42.90 4.02
729 2362 1.118033 CGTCACACATACGATACGGC 58.882 55.000 0.00 0.00 42.90 5.68
730 2363 1.532298 CGTCACACATACGATACGGCA 60.532 52.381 0.00 0.00 42.90 5.69
731 2364 2.739292 GTCACACATACGATACGGCAT 58.261 47.619 0.00 0.00 0.00 4.40
732 2365 2.471370 GTCACACATACGATACGGCATG 59.529 50.000 0.00 0.00 32.45 4.06
733 2366 1.192312 CACACATACGATACGGCATGC 59.808 52.381 9.90 9.90 30.39 4.06
734 2367 0.790207 CACATACGATACGGCATGCC 59.210 55.000 27.67 27.67 30.39 4.40
735 2368 0.391228 ACATACGATACGGCATGCCA 59.609 50.000 34.93 18.52 35.37 4.92
736 2369 0.790207 CATACGATACGGCATGCCAC 59.210 55.000 34.93 20.82 35.37 5.01
737 2370 0.391228 ATACGATACGGCATGCCACA 59.609 50.000 34.93 22.42 35.37 4.17
738 2371 0.528901 TACGATACGGCATGCCACAC 60.529 55.000 34.93 20.82 35.37 3.82
739 2372 2.870341 CGATACGGCATGCCACACG 61.870 63.158 34.93 27.13 35.37 4.49
740 2373 2.513666 ATACGGCATGCCACACGG 60.514 61.111 34.93 20.96 35.37 4.94
761 2394 3.444818 AAAACAAGGAGCGGGGGCA 62.445 57.895 0.00 0.00 0.00 5.36
790 2463 3.140325 AGATGGACGAAAGAAGCCAAA 57.860 42.857 0.00 0.00 35.03 3.28
799 2472 2.034221 GAAGCCAAAGAGCGGGGT 59.966 61.111 0.00 0.00 38.01 4.95
821 2515 4.216411 TGGTTAGTAGATGGAGCCAAAC 57.784 45.455 0.00 0.00 0.00 2.93
825 2519 2.716217 AGTAGATGGAGCCAAACAAGC 58.284 47.619 0.00 0.00 0.00 4.01
885 2629 1.376812 GGGGGTTACCACTGCTTCG 60.377 63.158 2.75 0.00 42.91 3.79
1197 2960 6.990939 TCTTCATACTACTGCGTACTAGACAT 59.009 38.462 0.00 0.00 0.00 3.06
1280 3050 1.284785 GACCACCCCAATGAGATCCAA 59.715 52.381 0.00 0.00 0.00 3.53
1444 3222 0.163788 CGTGTCCTCGTTGATGCAAC 59.836 55.000 0.00 0.00 40.54 4.17
1650 3440 2.048127 GAACGCTCGCCTCAAGGT 60.048 61.111 0.00 0.00 37.57 3.50
1734 3524 0.678048 GTTCCTCCGCCATGCTTTCT 60.678 55.000 0.00 0.00 0.00 2.52
1847 3685 3.791973 AGTTGTCAGATCTCCATCGAC 57.208 47.619 0.00 0.00 35.17 4.20
1904 3753 1.344438 TGTAACTGAGGACTGTGCCTG 59.656 52.381 0.00 0.00 38.73 4.85
2015 3873 7.147742 GGAGAAGTCAGAACAAAGGAGATCTAT 60.148 40.741 0.00 0.00 0.00 1.98
2016 3874 8.830915 AGAAGTCAGAACAAAGGAGATCTATA 57.169 34.615 0.00 0.00 0.00 1.31
2062 3922 6.431234 AGATTATTTCGTGAAAAGCCTGTTCT 59.569 34.615 0.00 0.00 33.56 3.01
2063 3923 3.691049 TTTCGTGAAAAGCCTGTTCTG 57.309 42.857 0.00 0.00 0.00 3.02
2064 3924 0.944386 TCGTGAAAAGCCTGTTCTGC 59.056 50.000 0.00 0.00 0.00 4.26
2065 3925 0.947244 CGTGAAAAGCCTGTTCTGCT 59.053 50.000 0.00 0.00 41.89 4.24
2066 3926 2.143122 CGTGAAAAGCCTGTTCTGCTA 58.857 47.619 0.00 0.00 38.34 3.49
2067 3927 2.096218 CGTGAAAAGCCTGTTCTGCTAC 60.096 50.000 0.00 0.00 38.34 3.58
2068 3928 2.226674 GTGAAAAGCCTGTTCTGCTACC 59.773 50.000 0.00 0.00 38.34 3.18
2069 3929 2.106511 TGAAAAGCCTGTTCTGCTACCT 59.893 45.455 0.00 0.00 38.34 3.08
2070 3930 2.481289 AAAGCCTGTTCTGCTACCTC 57.519 50.000 0.00 0.00 38.34 3.85
2071 3931 0.615850 AAGCCTGTTCTGCTACCTCC 59.384 55.000 0.00 0.00 38.34 4.30
2178 4080 2.156051 GACGCGGTTGGTTCCTCTCT 62.156 60.000 12.47 0.00 0.00 3.10
2262 6294 1.472480 CTAACACGCCAAATCCAAGGG 59.528 52.381 0.00 0.00 0.00 3.95
2303 6335 5.728741 AGAGACTAAGATTGATGGGTTTCCT 59.271 40.000 0.00 0.00 0.00 3.36
2304 6336 6.903534 AGAGACTAAGATTGATGGGTTTCCTA 59.096 38.462 0.00 0.00 0.00 2.94
2306 6338 7.928873 AGACTAAGATTGATGGGTTTCCTAAA 58.071 34.615 0.00 0.00 0.00 1.85
2307 6339 8.560903 AGACTAAGATTGATGGGTTTCCTAAAT 58.439 33.333 0.00 0.00 0.00 1.40
2308 6340 9.190317 GACTAAGATTGATGGGTTTCCTAAATT 57.810 33.333 0.00 0.00 0.00 1.82
2309 6341 8.971073 ACTAAGATTGATGGGTTTCCTAAATTG 58.029 33.333 0.00 0.00 0.00 2.32
2310 6342 9.189156 CTAAGATTGATGGGTTTCCTAAATTGA 57.811 33.333 0.00 0.00 0.00 2.57
2311 6343 8.613922 AAGATTGATGGGTTTCCTAAATTGAT 57.386 30.769 0.00 0.00 0.00 2.57
2312 6344 8.613922 AGATTGATGGGTTTCCTAAATTGATT 57.386 30.769 0.00 0.00 0.00 2.57
2313 6345 8.480501 AGATTGATGGGTTTCCTAAATTGATTG 58.519 33.333 0.00 0.00 0.00 2.67
2398 6821 2.230025 CCTGATGGAGGCATAGAGTACG 59.770 54.545 0.00 0.00 34.01 3.67
2399 6822 2.887783 CTGATGGAGGCATAGAGTACGT 59.112 50.000 0.00 0.00 0.00 3.57
2400 6823 4.072839 CTGATGGAGGCATAGAGTACGTA 58.927 47.826 0.00 0.00 0.00 3.57
2401 6824 3.819337 TGATGGAGGCATAGAGTACGTAC 59.181 47.826 18.10 18.10 0.00 3.67
2427 6850 9.020813 CCTTCGATAATATATACCACATCGTTG 57.979 37.037 12.82 0.00 37.24 4.10
2429 6852 9.917129 TTCGATAATATATACCACATCGTTGTT 57.083 29.630 0.00 0.00 37.24 2.83
2442 6865 9.880157 ACCACATCGTTGTTATAACTTAATACT 57.120 29.630 16.33 0.00 32.34 2.12
2469 6892 8.358148 ACCTGTTATGTTGAGTAGTATAATCCG 58.642 37.037 0.00 0.00 34.16 4.18
2470 6893 8.358148 CCTGTTATGTTGAGTAGTATAATCCGT 58.642 37.037 0.00 0.00 34.16 4.69
2473 6896 9.617975 GTTATGTTGAGTAGTATAATCCGTACC 57.382 37.037 0.00 0.00 34.16 3.34
2474 6897 6.304356 TGTTGAGTAGTATAATCCGTACCG 57.696 41.667 0.00 0.00 34.16 4.02
2475 6898 5.822519 TGTTGAGTAGTATAATCCGTACCGT 59.177 40.000 0.00 0.00 34.16 4.83
2476 6899 6.989759 TGTTGAGTAGTATAATCCGTACCGTA 59.010 38.462 0.00 0.00 34.16 4.02
2477 6900 7.661437 TGTTGAGTAGTATAATCCGTACCGTAT 59.339 37.037 0.00 0.00 34.16 3.06
2478 6901 7.601073 TGAGTAGTATAATCCGTACCGTATG 57.399 40.000 0.00 0.00 34.16 2.39
2479 6902 7.161404 TGAGTAGTATAATCCGTACCGTATGT 58.839 38.462 0.00 0.00 34.16 2.29
2480 6903 8.311109 TGAGTAGTATAATCCGTACCGTATGTA 58.689 37.037 0.00 0.00 34.16 2.29
2481 6904 8.480643 AGTAGTATAATCCGTACCGTATGTAC 57.519 38.462 0.00 0.00 45.31 2.90
2482 6905 6.743575 AGTATAATCCGTACCGTATGTACC 57.256 41.667 0.00 0.00 45.89 3.34
2483 6906 4.685169 ATAATCCGTACCGTATGTACCG 57.315 45.455 0.00 0.00 45.89 4.02
2484 6907 1.967319 ATCCGTACCGTATGTACCGT 58.033 50.000 0.00 0.00 45.89 4.83
2485 6908 2.605837 TCCGTACCGTATGTACCGTA 57.394 50.000 0.00 0.00 45.89 4.02
2486 6909 2.907634 TCCGTACCGTATGTACCGTAA 58.092 47.619 0.00 0.00 45.89 3.18
2487 6910 3.271729 TCCGTACCGTATGTACCGTAAA 58.728 45.455 0.00 0.00 45.89 2.01
2488 6911 3.690139 TCCGTACCGTATGTACCGTAAAA 59.310 43.478 0.00 0.00 45.89 1.52
2489 6912 4.156190 TCCGTACCGTATGTACCGTAAAAA 59.844 41.667 0.00 0.00 45.89 1.94
2557 6980 0.888285 GCAAGTTCAGCCTGCAGACT 60.888 55.000 17.39 5.81 0.00 3.24
2559 6982 2.344950 CAAGTTCAGCCTGCAGACTAG 58.655 52.381 17.39 4.18 0.00 2.57
2569 6992 1.279496 TGCAGACTAGCAGATGGGTT 58.721 50.000 0.00 0.00 40.11 4.11
2578 7001 4.594920 ACTAGCAGATGGGTTGTAGCATAT 59.405 41.667 0.00 0.00 31.27 1.78
2603 7026 2.693591 TCCTACACTGCATAGTACTGCC 59.306 50.000 5.39 0.00 41.58 4.85
2651 7074 3.623960 TGTATATGTTTGCCAACGCTACC 59.376 43.478 0.00 0.00 35.40 3.18
2652 7075 2.483014 TATGTTTGCCAACGCTACCT 57.517 45.000 0.00 0.00 35.40 3.08
2653 7076 1.616159 ATGTTTGCCAACGCTACCTT 58.384 45.000 0.00 0.00 35.40 3.50
2654 7077 0.948678 TGTTTGCCAACGCTACCTTC 59.051 50.000 0.00 0.00 35.40 3.46
2655 7078 0.240145 GTTTGCCAACGCTACCTTCC 59.760 55.000 0.00 0.00 35.36 3.46
2656 7079 0.109723 TTTGCCAACGCTACCTTCCT 59.890 50.000 0.00 0.00 35.36 3.36
2657 7080 0.978151 TTGCCAACGCTACCTTCCTA 59.022 50.000 0.00 0.00 35.36 2.94
2658 7081 0.535335 TGCCAACGCTACCTTCCTAG 59.465 55.000 0.00 0.00 35.36 3.02
2659 7082 0.810426 GCCAACGCTACCTTCCTAGC 60.810 60.000 0.00 0.00 36.53 3.42
2660 7083 0.824759 CCAACGCTACCTTCCTAGCT 59.175 55.000 0.00 0.00 37.57 3.32
2661 7084 2.029623 CCAACGCTACCTTCCTAGCTA 58.970 52.381 0.00 0.00 37.57 3.32
2662 7085 2.223758 CCAACGCTACCTTCCTAGCTAC 60.224 54.545 0.00 0.00 37.57 3.58
2663 7086 1.689984 ACGCTACCTTCCTAGCTACC 58.310 55.000 0.00 0.00 37.57 3.18
2664 7087 0.960286 CGCTACCTTCCTAGCTACCC 59.040 60.000 0.00 0.00 37.57 3.69
2665 7088 1.753141 CGCTACCTTCCTAGCTACCCA 60.753 57.143 0.00 0.00 37.57 4.51
2666 7089 2.610873 GCTACCTTCCTAGCTACCCAT 58.389 52.381 0.00 0.00 36.88 4.00
2667 7090 2.563620 GCTACCTTCCTAGCTACCCATC 59.436 54.545 0.00 0.00 36.88 3.51
2668 7091 2.104669 ACCTTCCTAGCTACCCATCC 57.895 55.000 0.00 0.00 0.00 3.51
2669 7092 1.294068 ACCTTCCTAGCTACCCATCCA 59.706 52.381 0.00 0.00 0.00 3.41
2670 7093 1.694696 CCTTCCTAGCTACCCATCCAC 59.305 57.143 0.00 0.00 0.00 4.02
2671 7094 1.341531 CTTCCTAGCTACCCATCCACG 59.658 57.143 0.00 0.00 0.00 4.94
2672 7095 1.113517 TCCTAGCTACCCATCCACGC 61.114 60.000 0.00 0.00 0.00 5.34
2673 7096 1.007271 CTAGCTACCCATCCACGCG 60.007 63.158 3.53 3.53 0.00 6.01
2674 7097 1.735376 CTAGCTACCCATCCACGCGT 61.735 60.000 5.58 5.58 0.00 6.01
2675 7098 1.731433 TAGCTACCCATCCACGCGTC 61.731 60.000 9.86 0.00 0.00 5.19
2676 7099 2.106332 CTACCCATCCACGCGTCC 59.894 66.667 9.86 0.00 0.00 4.79
2677 7100 2.680707 TACCCATCCACGCGTCCA 60.681 61.111 9.86 0.00 0.00 4.02
2678 7101 2.028125 CTACCCATCCACGCGTCCAT 62.028 60.000 9.86 0.00 0.00 3.41
2679 7102 2.023414 TACCCATCCACGCGTCCATC 62.023 60.000 9.86 0.00 0.00 3.51
2680 7103 2.588877 CCATCCACGCGTCCATCC 60.589 66.667 9.86 0.00 0.00 3.51
2681 7104 2.588877 CATCCACGCGTCCATCCC 60.589 66.667 9.86 0.00 0.00 3.85
2682 7105 2.764128 ATCCACGCGTCCATCCCT 60.764 61.111 9.86 0.00 0.00 4.20
2683 7106 2.797278 ATCCACGCGTCCATCCCTC 61.797 63.158 9.86 0.00 0.00 4.30
2684 7107 4.530857 CCACGCGTCCATCCCTCC 62.531 72.222 9.86 0.00 0.00 4.30
2685 7108 3.770040 CACGCGTCCATCCCTCCA 61.770 66.667 9.86 0.00 0.00 3.86
2686 7109 2.764128 ACGCGTCCATCCCTCCAT 60.764 61.111 5.58 0.00 0.00 3.41
2687 7110 2.029666 CGCGTCCATCCCTCCATC 59.970 66.667 0.00 0.00 0.00 3.51
2688 7111 2.029666 GCGTCCATCCCTCCATCG 59.970 66.667 0.00 0.00 0.00 3.84
2689 7112 2.029666 CGTCCATCCCTCCATCGC 59.970 66.667 0.00 0.00 0.00 4.58
2690 7113 2.502492 CGTCCATCCCTCCATCGCT 61.502 63.158 0.00 0.00 0.00 4.93
2691 7114 1.070445 GTCCATCCCTCCATCGCTG 59.930 63.158 0.00 0.00 0.00 5.18
2692 7115 2.281345 CCATCCCTCCATCGCTGC 60.281 66.667 0.00 0.00 0.00 5.25
2693 7116 2.664185 CATCCCTCCATCGCTGCG 60.664 66.667 17.25 17.25 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 75 7.990886 TGAACAGTGAATTCCAACTAAAGTAGT 59.009 33.333 2.27 0.00 41.73 2.73
135 142 6.163476 TCATGCTTAGTTGATTCGTAACACT 58.837 36.000 0.00 0.00 0.00 3.55
227 808 9.640952 CTGTATTTTCTTTTCCCCCTATCAATA 57.359 33.333 0.00 0.00 0.00 1.90
269 860 0.981183 TACACTCTTTGGGACGCCAT 59.019 50.000 0.00 0.00 0.00 4.40
359 1233 5.333721 GCATTTTTGTCACGTAAATTTGGGG 60.334 40.000 0.00 0.00 0.00 4.96
399 1273 4.108501 AGCCATGATTCATTCCATGCTA 57.891 40.909 0.00 0.00 38.95 3.49
433 1307 5.450137 GCAGTCCTATTCTAAAGCTGACGTA 60.450 44.000 0.00 0.00 0.00 3.57
440 1314 3.782046 TCACGCAGTCCTATTCTAAAGC 58.218 45.455 0.00 0.00 41.61 3.51
594 2227 4.386049 AGAACGCGTCACTAGAAAATGAAG 59.614 41.667 14.44 0.00 0.00 3.02
595 2228 4.149922 CAGAACGCGTCACTAGAAAATGAA 59.850 41.667 14.44 0.00 0.00 2.57
596 2229 3.673338 CAGAACGCGTCACTAGAAAATGA 59.327 43.478 14.44 0.00 0.00 2.57
597 2230 3.181530 CCAGAACGCGTCACTAGAAAATG 60.182 47.826 14.44 2.66 0.00 2.32
600 2233 1.933500 GCCAGAACGCGTCACTAGAAA 60.934 52.381 14.44 0.00 0.00 2.52
601 2234 0.388134 GCCAGAACGCGTCACTAGAA 60.388 55.000 14.44 0.00 0.00 2.10
602 2235 1.211969 GCCAGAACGCGTCACTAGA 59.788 57.895 14.44 0.00 0.00 2.43
603 2236 3.768632 GCCAGAACGCGTCACTAG 58.231 61.111 14.44 9.80 0.00 2.57
619 2252 2.094066 CAAAATTTCAGGGCGGCGC 61.094 57.895 26.17 26.17 0.00 6.53
620 2253 1.008361 CACAAAATTTCAGGGCGGCG 61.008 55.000 0.51 0.51 0.00 6.46
621 2254 0.033366 ACACAAAATTTCAGGGCGGC 59.967 50.000 0.00 0.00 0.00 6.53
622 2255 1.336795 GGACACAAAATTTCAGGGCGG 60.337 52.381 0.00 0.00 0.00 6.13
623 2256 1.613437 AGGACACAAAATTTCAGGGCG 59.387 47.619 0.00 0.00 0.00 6.13
624 2257 2.351738 CGAGGACACAAAATTTCAGGGC 60.352 50.000 0.00 0.00 0.00 5.19
625 2258 3.146066 TCGAGGACACAAAATTTCAGGG 58.854 45.455 0.00 0.00 0.00 4.45
626 2259 5.156355 CAATCGAGGACACAAAATTTCAGG 58.844 41.667 0.00 0.00 0.00 3.86
627 2260 5.626543 CACAATCGAGGACACAAAATTTCAG 59.373 40.000 0.00 0.00 0.00 3.02
628 2261 5.298026 TCACAATCGAGGACACAAAATTTCA 59.702 36.000 0.00 0.00 0.00 2.69
629 2262 5.757886 TCACAATCGAGGACACAAAATTTC 58.242 37.500 0.00 0.00 0.00 2.17
630 2263 5.766150 TCACAATCGAGGACACAAAATTT 57.234 34.783 0.00 0.00 0.00 1.82
631 2264 5.530915 TCTTCACAATCGAGGACACAAAATT 59.469 36.000 0.00 0.00 0.00 1.82
632 2265 5.063204 TCTTCACAATCGAGGACACAAAAT 58.937 37.500 0.00 0.00 0.00 1.82
633 2266 4.447290 TCTTCACAATCGAGGACACAAAA 58.553 39.130 0.00 0.00 0.00 2.44
634 2267 4.066646 TCTTCACAATCGAGGACACAAA 57.933 40.909 0.00 0.00 0.00 2.83
635 2268 3.744238 TCTTCACAATCGAGGACACAA 57.256 42.857 0.00 0.00 0.00 3.33
636 2269 3.006859 ACATCTTCACAATCGAGGACACA 59.993 43.478 0.00 0.00 0.00 3.72
637 2270 3.589988 ACATCTTCACAATCGAGGACAC 58.410 45.455 0.00 0.00 0.00 3.67
638 2271 3.961480 ACATCTTCACAATCGAGGACA 57.039 42.857 0.00 0.00 0.00 4.02
639 2272 6.910536 AATAACATCTTCACAATCGAGGAC 57.089 37.500 0.00 0.00 0.00 3.85
640 2273 6.538742 GGAAATAACATCTTCACAATCGAGGA 59.461 38.462 0.00 0.00 0.00 3.71
641 2274 6.316140 TGGAAATAACATCTTCACAATCGAGG 59.684 38.462 0.00 0.00 0.00 4.63
642 2275 7.148423 TGTGGAAATAACATCTTCACAATCGAG 60.148 37.037 0.00 0.00 0.00 4.04
643 2276 6.652900 TGTGGAAATAACATCTTCACAATCGA 59.347 34.615 0.00 0.00 0.00 3.59
644 2277 6.841119 TGTGGAAATAACATCTTCACAATCG 58.159 36.000 0.00 0.00 0.00 3.34
661 2294 9.531158 TGGCATTGATCAATATATATGTGGAAA 57.469 29.630 20.32 0.00 0.00 3.13
662 2295 9.181061 CTGGCATTGATCAATATATATGTGGAA 57.819 33.333 20.32 0.00 0.00 3.53
663 2296 7.776500 CCTGGCATTGATCAATATATATGTGGA 59.224 37.037 20.32 0.00 0.00 4.02
664 2297 7.776500 TCCTGGCATTGATCAATATATATGTGG 59.224 37.037 20.32 13.50 0.00 4.17
665 2298 8.741603 TCCTGGCATTGATCAATATATATGTG 57.258 34.615 20.32 8.65 0.00 3.21
666 2299 9.931698 ATTCCTGGCATTGATCAATATATATGT 57.068 29.630 20.32 2.01 0.00 2.29
668 2301 8.857098 GCATTCCTGGCATTGATCAATATATAT 58.143 33.333 20.32 5.84 0.00 0.86
669 2302 7.286087 GGCATTCCTGGCATTGATCAATATATA 59.714 37.037 20.32 7.06 46.77 0.86
670 2303 6.097839 GGCATTCCTGGCATTGATCAATATAT 59.902 38.462 20.32 0.00 46.77 0.86
671 2304 5.419788 GGCATTCCTGGCATTGATCAATATA 59.580 40.000 20.32 9.01 46.77 0.86
672 2305 4.222145 GGCATTCCTGGCATTGATCAATAT 59.778 41.667 20.32 6.23 46.77 1.28
673 2306 3.575256 GGCATTCCTGGCATTGATCAATA 59.425 43.478 20.32 4.98 46.77 1.90
674 2307 2.367567 GGCATTCCTGGCATTGATCAAT 59.632 45.455 15.36 15.36 46.77 2.57
675 2308 1.758280 GGCATTCCTGGCATTGATCAA 59.242 47.619 11.26 11.26 46.77 2.57
676 2309 1.405872 GGCATTCCTGGCATTGATCA 58.594 50.000 0.00 0.00 46.77 2.92
688 2321 2.354103 GCCAAGAAAAAGAGGGCATTCC 60.354 50.000 0.00 0.00 44.01 3.01
689 2322 2.354103 GGCCAAGAAAAAGAGGGCATTC 60.354 50.000 0.00 0.00 46.37 2.67
690 2323 1.625315 GGCCAAGAAAAAGAGGGCATT 59.375 47.619 0.00 0.00 46.37 3.56
691 2324 1.269958 GGCCAAGAAAAAGAGGGCAT 58.730 50.000 0.00 0.00 46.37 4.40
692 2325 1.178534 CGGCCAAGAAAAAGAGGGCA 61.179 55.000 2.24 0.00 46.37 5.36
693 2326 1.179174 ACGGCCAAGAAAAAGAGGGC 61.179 55.000 2.24 0.00 43.86 5.19
694 2327 0.881796 GACGGCCAAGAAAAAGAGGG 59.118 55.000 2.24 0.00 0.00 4.30
695 2328 1.266989 GTGACGGCCAAGAAAAAGAGG 59.733 52.381 2.24 0.00 0.00 3.69
696 2329 1.946768 TGTGACGGCCAAGAAAAAGAG 59.053 47.619 2.24 0.00 0.00 2.85
697 2330 1.673920 GTGTGACGGCCAAGAAAAAGA 59.326 47.619 2.24 0.00 0.00 2.52
698 2331 1.403679 TGTGTGACGGCCAAGAAAAAG 59.596 47.619 2.24 0.00 0.00 2.27
699 2332 1.464734 TGTGTGACGGCCAAGAAAAA 58.535 45.000 2.24 0.00 0.00 1.94
700 2333 1.686355 ATGTGTGACGGCCAAGAAAA 58.314 45.000 2.24 0.00 0.00 2.29
701 2334 2.147958 GTATGTGTGACGGCCAAGAAA 58.852 47.619 2.24 0.00 0.00 2.52
702 2335 1.803334 GTATGTGTGACGGCCAAGAA 58.197 50.000 2.24 0.00 0.00 2.52
703 2336 0.389296 CGTATGTGTGACGGCCAAGA 60.389 55.000 2.24 0.00 36.66 3.02
704 2337 0.389296 TCGTATGTGTGACGGCCAAG 60.389 55.000 2.24 0.00 40.70 3.61
705 2338 0.248012 ATCGTATGTGTGACGGCCAA 59.752 50.000 2.24 0.00 40.70 4.52
706 2339 1.104630 TATCGTATGTGTGACGGCCA 58.895 50.000 2.24 0.00 40.70 5.36
707 2340 1.484356 GTATCGTATGTGTGACGGCC 58.516 55.000 0.00 0.00 40.70 6.13
708 2341 1.118033 CGTATCGTATGTGTGACGGC 58.882 55.000 0.00 0.00 40.70 5.68
709 2342 1.750351 CCGTATCGTATGTGTGACGG 58.250 55.000 0.00 0.00 43.27 4.79
710 2343 1.118033 GCCGTATCGTATGTGTGACG 58.882 55.000 0.00 0.00 41.69 4.35
711 2344 2.197792 TGCCGTATCGTATGTGTGAC 57.802 50.000 0.00 0.00 0.00 3.67
712 2345 2.738135 CATGCCGTATCGTATGTGTGA 58.262 47.619 0.00 0.00 0.00 3.58
713 2346 1.192312 GCATGCCGTATCGTATGTGTG 59.808 52.381 6.36 0.00 0.00 3.82
714 2347 1.497991 GCATGCCGTATCGTATGTGT 58.502 50.000 6.36 0.00 0.00 3.72
715 2348 0.790207 GGCATGCCGTATCGTATGTG 59.210 55.000 23.48 0.00 0.00 3.21
716 2349 0.391228 TGGCATGCCGTATCGTATGT 59.609 50.000 30.87 0.00 39.42 2.29
717 2350 0.790207 GTGGCATGCCGTATCGTATG 59.210 55.000 30.87 0.00 39.42 2.39
718 2351 0.391228 TGTGGCATGCCGTATCGTAT 59.609 50.000 30.87 0.00 39.42 3.06
719 2352 0.528901 GTGTGGCATGCCGTATCGTA 60.529 55.000 30.87 9.56 39.42 3.43
720 2353 1.813753 GTGTGGCATGCCGTATCGT 60.814 57.895 30.87 0.00 39.42 3.73
721 2354 2.870341 CGTGTGGCATGCCGTATCG 61.870 63.158 30.87 25.53 39.42 2.92
722 2355 2.534019 CCGTGTGGCATGCCGTATC 61.534 63.158 30.87 20.29 39.42 2.24
723 2356 2.513666 CCGTGTGGCATGCCGTAT 60.514 61.111 30.87 0.00 39.42 3.06
733 2366 1.008995 CCTTGTTTTCGCCGTGTGG 60.009 57.895 0.00 0.00 38.77 4.17
734 2367 0.041312 CTCCTTGTTTTCGCCGTGTG 60.041 55.000 0.00 0.00 0.00 3.82
735 2368 1.782028 GCTCCTTGTTTTCGCCGTGT 61.782 55.000 0.00 0.00 0.00 4.49
736 2369 1.082104 GCTCCTTGTTTTCGCCGTG 60.082 57.895 0.00 0.00 0.00 4.94
737 2370 2.604174 CGCTCCTTGTTTTCGCCGT 61.604 57.895 0.00 0.00 0.00 5.68
738 2371 2.173382 CGCTCCTTGTTTTCGCCG 59.827 61.111 0.00 0.00 0.00 6.46
739 2372 2.561373 CCGCTCCTTGTTTTCGCC 59.439 61.111 0.00 0.00 0.00 5.54
740 2373 2.561373 CCCGCTCCTTGTTTTCGC 59.439 61.111 0.00 0.00 0.00 4.70
741 2374 2.332654 CCCCCGCTCCTTGTTTTCG 61.333 63.158 0.00 0.00 0.00 3.46
742 2375 2.636412 GCCCCCGCTCCTTGTTTTC 61.636 63.158 0.00 0.00 0.00 2.29
743 2376 2.600470 GCCCCCGCTCCTTGTTTT 60.600 61.111 0.00 0.00 0.00 2.43
744 2377 3.897122 TGCCCCCGCTCCTTGTTT 61.897 61.111 0.00 0.00 35.36 2.83
745 2378 4.660938 GTGCCCCCGCTCCTTGTT 62.661 66.667 0.00 0.00 35.36 2.83
761 2394 0.888619 TTCGTCCATCTTGCTCGAGT 59.111 50.000 15.13 0.00 32.39 4.18
790 2463 1.192428 CTACTAACCAACCCCGCTCT 58.808 55.000 0.00 0.00 0.00 4.09
799 2472 4.042311 TGTTTGGCTCCATCTACTAACCAA 59.958 41.667 0.00 0.00 34.06 3.67
821 2515 2.223021 CCATGGTATCGTCGTTTGCTTG 60.223 50.000 2.57 0.00 0.00 4.01
825 2519 2.018542 ACCCATGGTATCGTCGTTTG 57.981 50.000 11.73 0.00 32.11 2.93
866 2596 1.765074 GAAGCAGTGGTAACCCCCA 59.235 57.895 0.00 0.00 0.00 4.96
885 2629 3.616802 GCCCGTGCTCTCCTATTTATACC 60.617 52.174 0.00 0.00 33.53 2.73
1005 2756 3.934391 CTCCTGGTGGTCGCCGAAC 62.934 68.421 0.00 0.00 34.23 3.95
1197 2960 5.972935 TGATTAGTTTCTGCCGATCACTAA 58.027 37.500 10.79 10.79 33.37 2.24
1280 3050 2.816958 CGTCCAAGCTGAGCGCAT 60.817 61.111 11.47 0.00 42.61 4.73
1422 3194 1.337728 TGCATCAACGAGGACACGATT 60.338 47.619 0.00 0.00 37.03 3.34
1435 3213 1.164411 CAGCCCGTTAGTTGCATCAA 58.836 50.000 0.00 0.00 0.00 2.57
1444 3222 3.069586 TCATACAGATTCCAGCCCGTTAG 59.930 47.826 0.00 0.00 0.00 2.34
1593 3380 2.124570 CGATGCAGTCCTTGGGGG 60.125 66.667 0.00 0.00 0.00 5.40
1595 3382 1.450312 GGTCGATGCAGTCCTTGGG 60.450 63.158 0.00 0.00 0.00 4.12
1650 3440 4.980592 TGCAGTGGAGGAGCCCCA 62.981 66.667 0.00 0.00 34.97 4.96
1734 3524 5.935206 TGTTTACTCATACAATTTCCTCGCA 59.065 36.000 0.00 0.00 0.00 5.10
1967 3820 2.237143 CAGGAGTAATGTTGGAGCTCCA 59.763 50.000 32.00 32.00 45.92 3.86
2062 3922 3.844211 ACCATGTTTCTTAGGAGGTAGCA 59.156 43.478 0.00 0.00 0.00 3.49
2063 3923 4.489306 ACCATGTTTCTTAGGAGGTAGC 57.511 45.455 0.00 0.00 0.00 3.58
2064 3924 5.880887 GGAAACCATGTTTCTTAGGAGGTAG 59.119 44.000 16.62 0.00 0.00 3.18
2065 3925 5.550403 AGGAAACCATGTTTCTTAGGAGGTA 59.450 40.000 16.62 0.00 0.00 3.08
2066 3926 4.354087 AGGAAACCATGTTTCTTAGGAGGT 59.646 41.667 16.62 0.00 0.00 3.85
2067 3927 4.923415 AGGAAACCATGTTTCTTAGGAGG 58.077 43.478 16.62 0.00 0.00 4.30
2068 3928 5.122396 CGAAGGAAACCATGTTTCTTAGGAG 59.878 44.000 16.62 3.96 0.00 3.69
2069 3929 5.001232 CGAAGGAAACCATGTTTCTTAGGA 58.999 41.667 16.62 0.00 0.00 2.94
2070 3930 5.001232 TCGAAGGAAACCATGTTTCTTAGG 58.999 41.667 16.62 7.38 0.00 2.69
2071 3931 6.743575 ATCGAAGGAAACCATGTTTCTTAG 57.256 37.500 16.62 9.20 0.00 2.18
2178 4080 2.477972 CTTCTCACGGTCTCGCAGCA 62.478 60.000 0.00 0.00 40.63 4.41
2303 6335 6.798482 AGCTGCGATCAATTCAATCAATTTA 58.202 32.000 0.00 0.00 31.79 1.40
2304 6336 5.657474 AGCTGCGATCAATTCAATCAATTT 58.343 33.333 0.00 0.00 31.79 1.82
2306 6338 4.913335 AGCTGCGATCAATTCAATCAAT 57.087 36.364 0.00 0.00 0.00 2.57
2307 6339 4.707030 AAGCTGCGATCAATTCAATCAA 57.293 36.364 0.00 0.00 0.00 2.57
2308 6340 4.397103 AGAAAGCTGCGATCAATTCAATCA 59.603 37.500 9.73 0.00 0.00 2.57
2309 6341 4.733887 CAGAAAGCTGCGATCAATTCAATC 59.266 41.667 9.73 0.00 34.95 2.67
2310 6342 4.669318 CAGAAAGCTGCGATCAATTCAAT 58.331 39.130 9.73 0.00 34.95 2.57
2311 6343 4.087510 CAGAAAGCTGCGATCAATTCAA 57.912 40.909 9.73 0.00 34.95 2.69
2312 6344 3.752412 CAGAAAGCTGCGATCAATTCA 57.248 42.857 9.73 0.00 34.95 2.57
2333 6365 4.793216 CGTTTTTATTTGATGAGAAGGGCG 59.207 41.667 0.00 0.00 0.00 6.13
2398 6821 9.661187 CGATGTGGTATATATTATCGAAGGTAC 57.339 37.037 11.92 0.00 39.60 3.34
2399 6822 9.399797 ACGATGTGGTATATATTATCGAAGGTA 57.600 33.333 18.89 0.00 39.60 3.08
2400 6823 8.289939 ACGATGTGGTATATATTATCGAAGGT 57.710 34.615 18.89 3.72 39.60 3.50
2401 6824 9.020813 CAACGATGTGGTATATATTATCGAAGG 57.979 37.037 18.89 9.72 39.60 3.46
2443 6866 8.358148 CGGATTATACTACTCAACATAACAGGT 58.642 37.037 0.00 0.00 0.00 4.00
2444 6867 8.358148 ACGGATTATACTACTCAACATAACAGG 58.642 37.037 0.00 0.00 0.00 4.00
2447 6870 9.617975 GGTACGGATTATACTACTCAACATAAC 57.382 37.037 0.00 0.00 0.00 1.89
2490 6913 9.540538 ACATCCTGCACTAATAGTTATAGAGAT 57.459 33.333 0.00 0.00 0.00 2.75
2491 6914 8.941995 ACATCCTGCACTAATAGTTATAGAGA 57.058 34.615 0.00 0.00 0.00 3.10
2493 6916 8.740906 GCTACATCCTGCACTAATAGTTATAGA 58.259 37.037 0.00 0.00 0.00 1.98
2494 6917 8.523658 TGCTACATCCTGCACTAATAGTTATAG 58.476 37.037 0.00 0.00 33.94 1.31
2495 6918 8.417273 TGCTACATCCTGCACTAATAGTTATA 57.583 34.615 0.00 0.00 33.94 0.98
2557 6980 5.071653 TCAATATGCTACAACCCATCTGCTA 59.928 40.000 0.00 0.00 0.00 3.49
2559 6982 4.136796 TCAATATGCTACAACCCATCTGC 58.863 43.478 0.00 0.00 0.00 4.26
2578 7001 5.451937 GCAGTACTATGCAGTGTAGGATCAA 60.452 44.000 0.00 0.00 45.77 2.57
2651 7074 1.341531 CGTGGATGGGTAGCTAGGAAG 59.658 57.143 0.00 0.00 0.00 3.46
2652 7075 1.410004 CGTGGATGGGTAGCTAGGAA 58.590 55.000 0.00 0.00 0.00 3.36
2653 7076 1.113517 GCGTGGATGGGTAGCTAGGA 61.114 60.000 0.00 0.00 0.00 2.94
2654 7077 1.367840 GCGTGGATGGGTAGCTAGG 59.632 63.158 0.00 0.00 0.00 3.02
2655 7078 1.007271 CGCGTGGATGGGTAGCTAG 60.007 63.158 0.00 0.00 0.00 3.42
2656 7079 1.731433 GACGCGTGGATGGGTAGCTA 61.731 60.000 20.70 0.00 34.88 3.32
2657 7080 3.075005 ACGCGTGGATGGGTAGCT 61.075 61.111 12.93 0.00 32.71 3.32
2658 7081 2.585247 GACGCGTGGATGGGTAGC 60.585 66.667 20.70 0.00 34.88 3.58
2659 7082 2.028125 ATGGACGCGTGGATGGGTAG 62.028 60.000 20.70 0.00 34.88 3.18
2660 7083 2.023414 GATGGACGCGTGGATGGGTA 62.023 60.000 20.70 0.00 34.88 3.69
2661 7084 3.385749 GATGGACGCGTGGATGGGT 62.386 63.158 20.70 0.00 37.78 4.51
2662 7085 2.588877 GATGGACGCGTGGATGGG 60.589 66.667 20.70 0.00 0.00 4.00
2663 7086 2.588877 GGATGGACGCGTGGATGG 60.589 66.667 20.70 0.00 0.00 3.51
2664 7087 2.588877 GGGATGGACGCGTGGATG 60.589 66.667 20.70 0.00 0.00 3.51
2665 7088 2.764128 AGGGATGGACGCGTGGAT 60.764 61.111 20.70 8.12 36.53 3.41
2666 7089 3.458163 GAGGGATGGACGCGTGGA 61.458 66.667 20.70 1.85 36.53 4.02
2667 7090 4.530857 GGAGGGATGGACGCGTGG 62.531 72.222 20.70 0.00 36.53 4.94
2668 7091 2.978452 GATGGAGGGATGGACGCGTG 62.978 65.000 20.70 0.00 36.53 5.34
2669 7092 2.764128 ATGGAGGGATGGACGCGT 60.764 61.111 13.85 13.85 36.53 6.01
2670 7093 2.029666 GATGGAGGGATGGACGCG 59.970 66.667 3.53 3.53 36.53 6.01
2671 7094 2.029666 CGATGGAGGGATGGACGC 59.970 66.667 0.00 0.00 0.00 5.19
2672 7095 2.029666 GCGATGGAGGGATGGACG 59.970 66.667 0.00 0.00 0.00 4.79
2673 7096 1.070445 CAGCGATGGAGGGATGGAC 59.930 63.158 0.00 0.00 0.00 4.02
2674 7097 2.811514 GCAGCGATGGAGGGATGGA 61.812 63.158 1.46 0.00 0.00 3.41
2675 7098 2.281345 GCAGCGATGGAGGGATGG 60.281 66.667 1.46 0.00 0.00 3.51
2676 7099 2.664185 CGCAGCGATGGAGGGATG 60.664 66.667 9.98 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.