Multiple sequence alignment - TraesCS7B01G072800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G072800 | chr7B | 100.000 | 2694 | 0 | 0 | 1 | 2694 | 80710978 | 80708285 | 0.000000e+00 | 4975.0 |
1 | TraesCS7B01G072800 | chr7B | 81.746 | 882 | 102 | 34 | 875 | 1728 | 80688863 | 80688013 | 0.000000e+00 | 682.0 |
2 | TraesCS7B01G072800 | chr7B | 83.721 | 301 | 35 | 6 | 296 | 594 | 80689331 | 80689043 | 3.420000e-69 | 272.0 |
3 | TraesCS7B01G072800 | chr7B | 79.545 | 176 | 14 | 7 | 2185 | 2360 | 80687607 | 80687454 | 3.670000e-19 | 106.0 |
4 | TraesCS7B01G072800 | chr7B | 94.828 | 58 | 2 | 1 | 2492 | 2549 | 80687002 | 80686946 | 3.690000e-14 | 89.8 |
5 | TraesCS7B01G072800 | chr7D | 94.187 | 1686 | 62 | 19 | 764 | 2429 | 119761559 | 119759890 | 0.000000e+00 | 2538.0 |
6 | TraesCS7B01G072800 | chr7D | 80.870 | 1103 | 128 | 41 | 867 | 1939 | 119747682 | 119746633 | 0.000000e+00 | 791.0 |
7 | TraesCS7B01G072800 | chr7D | 88.065 | 620 | 37 | 17 | 1 | 594 | 119768353 | 119767745 | 0.000000e+00 | 701.0 |
8 | TraesCS7B01G072800 | chr7D | 94.483 | 145 | 7 | 1 | 2507 | 2651 | 119759891 | 119759748 | 3.490000e-54 | 222.0 |
9 | TraesCS7B01G072800 | chr7D | 87.701 | 187 | 14 | 5 | 296 | 480 | 119748205 | 119748026 | 2.720000e-50 | 209.0 |
10 | TraesCS7B01G072800 | chr7D | 87.273 | 165 | 17 | 2 | 594 | 754 | 332131686 | 332131522 | 4.580000e-43 | 185.0 |
11 | TraesCS7B01G072800 | chr7D | 87.273 | 165 | 17 | 2 | 594 | 754 | 332865521 | 332865357 | 4.580000e-43 | 185.0 |
12 | TraesCS7B01G072800 | chr7D | 85.475 | 179 | 19 | 3 | 4 | 177 | 119749346 | 119749170 | 2.130000e-41 | 180.0 |
13 | TraesCS7B01G072800 | chr7D | 86.667 | 165 | 18 | 2 | 594 | 754 | 332172586 | 332172422 | 2.130000e-41 | 180.0 |
14 | TraesCS7B01G072800 | chr7D | 86.747 | 166 | 16 | 3 | 594 | 754 | 332176207 | 332176043 | 2.130000e-41 | 180.0 |
15 | TraesCS7B01G072800 | chr7D | 86.747 | 166 | 16 | 3 | 594 | 754 | 332180393 | 332180229 | 2.130000e-41 | 180.0 |
16 | TraesCS7B01G072800 | chr7D | 86.747 | 166 | 16 | 3 | 594 | 754 | 332184583 | 332184419 | 2.130000e-41 | 180.0 |
17 | TraesCS7B01G072800 | chr7D | 86.667 | 165 | 18 | 2 | 594 | 754 | 332880099 | 332879935 | 2.130000e-41 | 180.0 |
18 | TraesCS7B01G072800 | chr7D | 85.714 | 105 | 7 | 5 | 2257 | 2361 | 119744300 | 119744204 | 1.320000e-18 | 104.0 |
19 | TraesCS7B01G072800 | chr7A | 92.833 | 1451 | 63 | 22 | 748 | 2166 | 124410948 | 124409507 | 0.000000e+00 | 2065.0 |
20 | TraesCS7B01G072800 | chr7A | 90.110 | 1638 | 69 | 34 | 748 | 2312 | 124457036 | 124455419 | 0.000000e+00 | 2041.0 |
21 | TraesCS7B01G072800 | chr7A | 91.843 | 613 | 29 | 10 | 1 | 594 | 124457713 | 124457103 | 0.000000e+00 | 835.0 |
22 | TraesCS7B01G072800 | chr7A | 88.657 | 432 | 29 | 9 | 35 | 448 | 124412284 | 124411855 | 2.390000e-140 | 508.0 |
23 | TraesCS7B01G072800 | chr7A | 89.881 | 168 | 7 | 6 | 436 | 594 | 124411173 | 124411007 | 9.780000e-50 | 207.0 |
24 | TraesCS7B01G072800 | chr7A | 87.135 | 171 | 18 | 2 | 588 | 754 | 375281663 | 375281493 | 9.840000e-45 | 191.0 |
25 | TraesCS7B01G072800 | chr7A | 87.273 | 165 | 17 | 2 | 594 | 754 | 375419413 | 375419249 | 4.580000e-43 | 185.0 |
26 | TraesCS7B01G072800 | chr7A | 83.200 | 125 | 9 | 6 | 2241 | 2361 | 124436246 | 124436130 | 1.320000e-18 | 104.0 |
27 | TraesCS7B01G072800 | chr7A | 96.552 | 58 | 1 | 1 | 2492 | 2549 | 124434233 | 124434177 | 7.940000e-16 | 95.3 |
28 | TraesCS7B01G072800 | chr7A | 96.226 | 53 | 2 | 0 | 747 | 799 | 124457077 | 124457025 | 1.330000e-13 | 87.9 |
29 | TraesCS7B01G072800 | chr7A | 94.340 | 53 | 3 | 0 | 747 | 799 | 124410989 | 124410937 | 6.180000e-12 | 82.4 |
30 | TraesCS7B01G072800 | chr7A | 91.379 | 58 | 4 | 1 | 2492 | 2549 | 124380139 | 124380083 | 8.000000e-11 | 78.7 |
31 | TraesCS7B01G072800 | chr6D | 95.652 | 46 | 0 | 1 | 2432 | 2477 | 327349008 | 327348965 | 3.720000e-09 | 73.1 |
32 | TraesCS7B01G072800 | chr3D | 95.652 | 46 | 0 | 1 | 2432 | 2477 | 436251458 | 436251415 | 3.720000e-09 | 73.1 |
33 | TraesCS7B01G072800 | chr5D | 100.000 | 33 | 0 | 0 | 2432 | 2464 | 438434425 | 438434457 | 8.050000e-06 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G072800 | chr7B | 80708285 | 80710978 | 2693 | True | 4975.000000 | 4975 | 100.000000 | 1 | 2694 | 1 | chr7B.!!$R1 | 2693 |
1 | TraesCS7B01G072800 | chr7B | 80686946 | 80689331 | 2385 | True | 287.450000 | 682 | 84.960000 | 296 | 2549 | 4 | chr7B.!!$R2 | 2253 |
2 | TraesCS7B01G072800 | chr7D | 119759748 | 119761559 | 1811 | True | 1380.000000 | 2538 | 94.335000 | 764 | 2651 | 2 | chr7D.!!$R8 | 1887 |
3 | TraesCS7B01G072800 | chr7D | 119767745 | 119768353 | 608 | True | 701.000000 | 701 | 88.065000 | 1 | 594 | 1 | chr7D.!!$R1 | 593 |
4 | TraesCS7B01G072800 | chr7D | 119744204 | 119749346 | 5142 | True | 321.000000 | 791 | 84.940000 | 4 | 2361 | 4 | chr7D.!!$R7 | 2357 |
5 | TraesCS7B01G072800 | chr7A | 124455419 | 124457713 | 2294 | True | 987.966667 | 2041 | 92.726333 | 1 | 2312 | 3 | chr7A.!!$R6 | 2311 |
6 | TraesCS7B01G072800 | chr7A | 124409507 | 124412284 | 2777 | True | 715.600000 | 2065 | 91.427750 | 35 | 2166 | 4 | chr7A.!!$R4 | 2131 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
640 | 2273 | 0.033366 | GCCGCCCTGAAATTTTGTGT | 59.967 | 50.0 | 0.0 | 0.0 | 0.0 | 3.72 | F |
702 | 2335 | 0.114954 | TGCCAGGAATGCCCTCTTTT | 59.885 | 50.0 | 0.0 | 0.0 | 45.6 | 2.27 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1595 | 3382 | 1.450312 | GGTCGATGCAGTCCTTGGG | 60.450 | 63.158 | 0.0 | 0.0 | 0.0 | 4.12 | R |
2655 | 7078 | 1.007271 | CGCGTGGATGGGTAGCTAG | 60.007 | 63.158 | 0.0 | 0.0 | 0.0 | 3.42 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
52 | 53 | 6.276847 | CACCTAAAATACTCGAGCATCTTCT | 58.723 | 40.000 | 13.61 | 0.00 | 0.00 | 2.85 |
227 | 808 | 0.528249 | GCAATGCCGCGGATCATTTT | 60.528 | 50.000 | 33.48 | 7.59 | 31.15 | 1.82 |
269 | 860 | 1.379916 | CAGGGTCCAAGGCACATGA | 59.620 | 57.895 | 0.00 | 0.00 | 0.00 | 3.07 |
357 | 1231 | 0.249489 | ATCGGCTCTGTGGTAATCGC | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
359 | 1233 | 1.523938 | GGCTCTGTGGTAATCGCCC | 60.524 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
433 | 1307 | 7.288810 | TGAATCATGGCTAAAACAAAGAAGT | 57.711 | 32.000 | 0.00 | 0.00 | 0.00 | 3.01 |
440 | 1314 | 5.235616 | TGGCTAAAACAAAGAAGTACGTCAG | 59.764 | 40.000 | 11.47 | 3.40 | 0.00 | 3.51 |
520 | 2143 | 5.530915 | TCCTCAAATAATGGTAATTCTGGCG | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 5.69 |
594 | 2227 | 1.897560 | CACCCACCAAAAGAGAGGAC | 58.102 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
595 | 2228 | 1.421646 | CACCCACCAAAAGAGAGGACT | 59.578 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
596 | 2229 | 2.136026 | ACCCACCAAAAGAGAGGACTT | 58.864 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
597 | 2230 | 2.106684 | ACCCACCAAAAGAGAGGACTTC | 59.893 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
600 | 2233 | 4.401925 | CCACCAAAAGAGAGGACTTCATT | 58.598 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
601 | 2234 | 4.829492 | CCACCAAAAGAGAGGACTTCATTT | 59.171 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
602 | 2235 | 5.302823 | CCACCAAAAGAGAGGACTTCATTTT | 59.697 | 40.000 | 0.00 | 0.00 | 31.18 | 1.82 |
603 | 2236 | 6.442112 | CACCAAAAGAGAGGACTTCATTTTC | 58.558 | 40.000 | 0.00 | 0.00 | 29.61 | 2.29 |
604 | 2237 | 6.264067 | CACCAAAAGAGAGGACTTCATTTTCT | 59.736 | 38.462 | 0.00 | 0.00 | 29.61 | 2.52 |
605 | 2238 | 7.445402 | CACCAAAAGAGAGGACTTCATTTTCTA | 59.555 | 37.037 | 0.00 | 0.00 | 29.61 | 2.10 |
607 | 2240 | 7.663493 | CCAAAAGAGAGGACTTCATTTTCTAGT | 59.337 | 37.037 | 0.00 | 0.00 | 29.61 | 2.57 |
608 | 2241 | 8.502387 | CAAAAGAGAGGACTTCATTTTCTAGTG | 58.498 | 37.037 | 0.00 | 0.00 | 29.61 | 2.74 |
610 | 2243 | 6.930731 | AGAGAGGACTTCATTTTCTAGTGAC | 58.069 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
611 | 2244 | 5.715070 | AGAGGACTTCATTTTCTAGTGACG | 58.285 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
612 | 2245 | 4.246458 | AGGACTTCATTTTCTAGTGACGC | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
613 | 2246 | 3.060895 | GGACTTCATTTTCTAGTGACGCG | 59.939 | 47.826 | 3.53 | 3.53 | 0.00 | 6.01 |
614 | 2247 | 3.650139 | ACTTCATTTTCTAGTGACGCGT | 58.350 | 40.909 | 13.85 | 13.85 | 0.00 | 6.01 |
615 | 2248 | 4.056050 | ACTTCATTTTCTAGTGACGCGTT | 58.944 | 39.130 | 15.53 | 0.00 | 0.00 | 4.84 |
616 | 2249 | 4.150098 | ACTTCATTTTCTAGTGACGCGTTC | 59.850 | 41.667 | 15.53 | 10.42 | 0.00 | 3.95 |
617 | 2250 | 3.909430 | TCATTTTCTAGTGACGCGTTCT | 58.091 | 40.909 | 15.53 | 17.55 | 0.00 | 3.01 |
618 | 2251 | 3.673338 | TCATTTTCTAGTGACGCGTTCTG | 59.327 | 43.478 | 15.53 | 10.14 | 0.00 | 3.02 |
619 | 2252 | 2.060326 | TTTCTAGTGACGCGTTCTGG | 57.940 | 50.000 | 15.53 | 16.87 | 0.00 | 3.86 |
620 | 2253 | 0.388134 | TTCTAGTGACGCGTTCTGGC | 60.388 | 55.000 | 15.53 | 0.00 | 0.00 | 4.85 |
635 | 2268 | 3.758931 | GGCGCCGCCCTGAAATTT | 61.759 | 61.111 | 19.58 | 0.00 | 44.06 | 1.82 |
636 | 2269 | 2.261361 | GCGCCGCCCTGAAATTTT | 59.739 | 55.556 | 0.00 | 0.00 | 0.00 | 1.82 |
637 | 2270 | 2.094066 | GCGCCGCCCTGAAATTTTG | 61.094 | 57.895 | 0.00 | 0.00 | 0.00 | 2.44 |
638 | 2271 | 1.288752 | CGCCGCCCTGAAATTTTGT | 59.711 | 52.632 | 0.00 | 0.00 | 0.00 | 2.83 |
639 | 2272 | 1.008361 | CGCCGCCCTGAAATTTTGTG | 61.008 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
640 | 2273 | 0.033366 | GCCGCCCTGAAATTTTGTGT | 59.967 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
641 | 2274 | 1.934849 | GCCGCCCTGAAATTTTGTGTC | 60.935 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
642 | 2275 | 1.336795 | CCGCCCTGAAATTTTGTGTCC | 60.337 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
643 | 2276 | 1.613437 | CGCCCTGAAATTTTGTGTCCT | 59.387 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
644 | 2277 | 2.351738 | CGCCCTGAAATTTTGTGTCCTC | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
645 | 2278 | 2.351738 | GCCCTGAAATTTTGTGTCCTCG | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
646 | 2279 | 3.146066 | CCCTGAAATTTTGTGTCCTCGA | 58.854 | 45.455 | 0.00 | 0.00 | 0.00 | 4.04 |
647 | 2280 | 3.758554 | CCCTGAAATTTTGTGTCCTCGAT | 59.241 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
648 | 2281 | 4.218417 | CCCTGAAATTTTGTGTCCTCGATT | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
649 | 2282 | 5.156355 | CCTGAAATTTTGTGTCCTCGATTG | 58.844 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
650 | 2283 | 5.278463 | CCTGAAATTTTGTGTCCTCGATTGT | 60.278 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
651 | 2284 | 5.518812 | TGAAATTTTGTGTCCTCGATTGTG | 58.481 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
652 | 2285 | 5.298026 | TGAAATTTTGTGTCCTCGATTGTGA | 59.702 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
653 | 2286 | 5.766150 | AATTTTGTGTCCTCGATTGTGAA | 57.234 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
654 | 2287 | 4.811555 | TTTTGTGTCCTCGATTGTGAAG | 57.188 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
655 | 2288 | 3.744238 | TTGTGTCCTCGATTGTGAAGA | 57.256 | 42.857 | 0.00 | 0.00 | 0.00 | 2.87 |
656 | 2289 | 3.961480 | TGTGTCCTCGATTGTGAAGAT | 57.039 | 42.857 | 0.00 | 0.00 | 0.00 | 2.40 |
657 | 2290 | 3.588955 | TGTGTCCTCGATTGTGAAGATG | 58.411 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
658 | 2291 | 3.006859 | TGTGTCCTCGATTGTGAAGATGT | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
659 | 2292 | 3.997021 | GTGTCCTCGATTGTGAAGATGTT | 59.003 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
660 | 2293 | 5.168569 | GTGTCCTCGATTGTGAAGATGTTA | 58.831 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
661 | 2294 | 5.812642 | GTGTCCTCGATTGTGAAGATGTTAT | 59.187 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
662 | 2295 | 6.313905 | GTGTCCTCGATTGTGAAGATGTTATT | 59.686 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
663 | 2296 | 6.878923 | TGTCCTCGATTGTGAAGATGTTATTT | 59.121 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
664 | 2297 | 7.064609 | TGTCCTCGATTGTGAAGATGTTATTTC | 59.935 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
665 | 2298 | 6.538742 | TCCTCGATTGTGAAGATGTTATTTCC | 59.461 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
666 | 2299 | 6.316140 | CCTCGATTGTGAAGATGTTATTTCCA | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
667 | 2300 | 7.072177 | TCGATTGTGAAGATGTTATTTCCAC | 57.928 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
668 | 2301 | 6.652900 | TCGATTGTGAAGATGTTATTTCCACA | 59.347 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
669 | 2302 | 7.336679 | TCGATTGTGAAGATGTTATTTCCACAT | 59.663 | 33.333 | 0.00 | 0.00 | 37.58 | 3.21 |
670 | 2303 | 8.611757 | CGATTGTGAAGATGTTATTTCCACATA | 58.388 | 33.333 | 0.00 | 0.00 | 34.89 | 2.29 |
687 | 2320 | 9.531158 | TTTCCACATATATATTGATCAATGCCA | 57.469 | 29.630 | 27.59 | 14.25 | 32.50 | 4.92 |
688 | 2321 | 8.741603 | TCCACATATATATTGATCAATGCCAG | 57.258 | 34.615 | 27.59 | 15.50 | 32.50 | 4.85 |
689 | 2322 | 7.776500 | TCCACATATATATTGATCAATGCCAGG | 59.224 | 37.037 | 27.59 | 17.64 | 32.50 | 4.45 |
690 | 2323 | 7.776500 | CCACATATATATTGATCAATGCCAGGA | 59.224 | 37.037 | 27.59 | 9.70 | 32.50 | 3.86 |
691 | 2324 | 9.181061 | CACATATATATTGATCAATGCCAGGAA | 57.819 | 33.333 | 27.59 | 9.00 | 32.50 | 3.36 |
692 | 2325 | 9.931698 | ACATATATATTGATCAATGCCAGGAAT | 57.068 | 29.630 | 27.59 | 15.00 | 32.50 | 3.01 |
694 | 2327 | 3.746045 | ATTGATCAATGCCAGGAATGC | 57.254 | 42.857 | 20.11 | 0.00 | 0.00 | 3.56 |
695 | 2328 | 1.405872 | TGATCAATGCCAGGAATGCC | 58.594 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
696 | 2329 | 0.677842 | GATCAATGCCAGGAATGCCC | 59.322 | 55.000 | 0.00 | 0.00 | 33.31 | 5.36 |
697 | 2330 | 7.704730 | TATTGATCAATGCCAGGAATGCCCT | 62.705 | 44.000 | 27.59 | 2.09 | 37.75 | 5.19 |
698 | 2331 | 0.396139 | TCAATGCCAGGAATGCCCTC | 60.396 | 55.000 | 0.00 | 0.00 | 45.60 | 4.30 |
699 | 2332 | 0.396695 | CAATGCCAGGAATGCCCTCT | 60.397 | 55.000 | 0.00 | 0.00 | 45.60 | 3.69 |
700 | 2333 | 0.337428 | AATGCCAGGAATGCCCTCTT | 59.663 | 50.000 | 0.00 | 0.00 | 45.60 | 2.85 |
701 | 2334 | 0.337428 | ATGCCAGGAATGCCCTCTTT | 59.663 | 50.000 | 0.00 | 0.00 | 45.60 | 2.52 |
702 | 2335 | 0.114954 | TGCCAGGAATGCCCTCTTTT | 59.885 | 50.000 | 0.00 | 0.00 | 45.60 | 2.27 |
703 | 2336 | 1.269958 | GCCAGGAATGCCCTCTTTTT | 58.730 | 50.000 | 0.00 | 0.00 | 45.60 | 1.94 |
704 | 2337 | 1.205655 | GCCAGGAATGCCCTCTTTTTC | 59.794 | 52.381 | 0.00 | 0.00 | 45.60 | 2.29 |
705 | 2338 | 2.812658 | CCAGGAATGCCCTCTTTTTCT | 58.187 | 47.619 | 0.00 | 0.00 | 45.60 | 2.52 |
706 | 2339 | 3.168292 | CCAGGAATGCCCTCTTTTTCTT | 58.832 | 45.455 | 0.00 | 0.00 | 45.60 | 2.52 |
707 | 2340 | 3.056322 | CCAGGAATGCCCTCTTTTTCTTG | 60.056 | 47.826 | 0.00 | 0.00 | 45.60 | 3.02 |
708 | 2341 | 3.056322 | CAGGAATGCCCTCTTTTTCTTGG | 60.056 | 47.826 | 0.00 | 0.00 | 45.60 | 3.61 |
709 | 2342 | 2.354103 | GGAATGCCCTCTTTTTCTTGGC | 60.354 | 50.000 | 0.00 | 0.00 | 42.49 | 4.52 |
710 | 2343 | 1.269958 | ATGCCCTCTTTTTCTTGGCC | 58.730 | 50.000 | 0.00 | 0.00 | 41.46 | 5.36 |
711 | 2344 | 1.178534 | TGCCCTCTTTTTCTTGGCCG | 61.179 | 55.000 | 0.00 | 0.00 | 41.46 | 6.13 |
712 | 2345 | 1.179174 | GCCCTCTTTTTCTTGGCCGT | 61.179 | 55.000 | 0.00 | 0.00 | 36.07 | 5.68 |
713 | 2346 | 0.881796 | CCCTCTTTTTCTTGGCCGTC | 59.118 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
714 | 2347 | 1.604604 | CCTCTTTTTCTTGGCCGTCA | 58.395 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
715 | 2348 | 1.266989 | CCTCTTTTTCTTGGCCGTCAC | 59.733 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
716 | 2349 | 1.946768 | CTCTTTTTCTTGGCCGTCACA | 59.053 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
717 | 2350 | 1.673920 | TCTTTTTCTTGGCCGTCACAC | 59.326 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
718 | 2351 | 1.403679 | CTTTTTCTTGGCCGTCACACA | 59.596 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
719 | 2352 | 1.686355 | TTTTCTTGGCCGTCACACAT | 58.314 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
720 | 2353 | 2.552599 | TTTCTTGGCCGTCACACATA | 57.447 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
721 | 2354 | 1.803334 | TTCTTGGCCGTCACACATAC | 58.197 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
722 | 2355 | 0.389296 | TCTTGGCCGTCACACATACG | 60.389 | 55.000 | 0.00 | 0.00 | 40.01 | 3.06 |
723 | 2356 | 0.389296 | CTTGGCCGTCACACATACGA | 60.389 | 55.000 | 0.00 | 0.00 | 42.90 | 3.43 |
724 | 2357 | 0.248012 | TTGGCCGTCACACATACGAT | 59.752 | 50.000 | 0.00 | 0.00 | 42.90 | 3.73 |
725 | 2358 | 1.104630 | TGGCCGTCACACATACGATA | 58.895 | 50.000 | 0.00 | 0.00 | 42.90 | 2.92 |
726 | 2359 | 1.202325 | TGGCCGTCACACATACGATAC | 60.202 | 52.381 | 0.00 | 0.00 | 42.90 | 2.24 |
727 | 2360 | 1.118033 | GCCGTCACACATACGATACG | 58.882 | 55.000 | 0.00 | 0.00 | 42.90 | 3.06 |
728 | 2361 | 1.750351 | CCGTCACACATACGATACGG | 58.250 | 55.000 | 0.00 | 0.00 | 42.90 | 4.02 |
729 | 2362 | 1.118033 | CGTCACACATACGATACGGC | 58.882 | 55.000 | 0.00 | 0.00 | 42.90 | 5.68 |
730 | 2363 | 1.532298 | CGTCACACATACGATACGGCA | 60.532 | 52.381 | 0.00 | 0.00 | 42.90 | 5.69 |
731 | 2364 | 2.739292 | GTCACACATACGATACGGCAT | 58.261 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
732 | 2365 | 2.471370 | GTCACACATACGATACGGCATG | 59.529 | 50.000 | 0.00 | 0.00 | 32.45 | 4.06 |
733 | 2366 | 1.192312 | CACACATACGATACGGCATGC | 59.808 | 52.381 | 9.90 | 9.90 | 30.39 | 4.06 |
734 | 2367 | 0.790207 | CACATACGATACGGCATGCC | 59.210 | 55.000 | 27.67 | 27.67 | 30.39 | 4.40 |
735 | 2368 | 0.391228 | ACATACGATACGGCATGCCA | 59.609 | 50.000 | 34.93 | 18.52 | 35.37 | 4.92 |
736 | 2369 | 0.790207 | CATACGATACGGCATGCCAC | 59.210 | 55.000 | 34.93 | 20.82 | 35.37 | 5.01 |
737 | 2370 | 0.391228 | ATACGATACGGCATGCCACA | 59.609 | 50.000 | 34.93 | 22.42 | 35.37 | 4.17 |
738 | 2371 | 0.528901 | TACGATACGGCATGCCACAC | 60.529 | 55.000 | 34.93 | 20.82 | 35.37 | 3.82 |
739 | 2372 | 2.870341 | CGATACGGCATGCCACACG | 61.870 | 63.158 | 34.93 | 27.13 | 35.37 | 4.49 |
740 | 2373 | 2.513666 | ATACGGCATGCCACACGG | 60.514 | 61.111 | 34.93 | 20.96 | 35.37 | 4.94 |
761 | 2394 | 3.444818 | AAAACAAGGAGCGGGGGCA | 62.445 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
790 | 2463 | 3.140325 | AGATGGACGAAAGAAGCCAAA | 57.860 | 42.857 | 0.00 | 0.00 | 35.03 | 3.28 |
799 | 2472 | 2.034221 | GAAGCCAAAGAGCGGGGT | 59.966 | 61.111 | 0.00 | 0.00 | 38.01 | 4.95 |
821 | 2515 | 4.216411 | TGGTTAGTAGATGGAGCCAAAC | 57.784 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
825 | 2519 | 2.716217 | AGTAGATGGAGCCAAACAAGC | 58.284 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
885 | 2629 | 1.376812 | GGGGGTTACCACTGCTTCG | 60.377 | 63.158 | 2.75 | 0.00 | 42.91 | 3.79 |
1197 | 2960 | 6.990939 | TCTTCATACTACTGCGTACTAGACAT | 59.009 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
1280 | 3050 | 1.284785 | GACCACCCCAATGAGATCCAA | 59.715 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
1444 | 3222 | 0.163788 | CGTGTCCTCGTTGATGCAAC | 59.836 | 55.000 | 0.00 | 0.00 | 40.54 | 4.17 |
1650 | 3440 | 2.048127 | GAACGCTCGCCTCAAGGT | 60.048 | 61.111 | 0.00 | 0.00 | 37.57 | 3.50 |
1734 | 3524 | 0.678048 | GTTCCTCCGCCATGCTTTCT | 60.678 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1847 | 3685 | 3.791973 | AGTTGTCAGATCTCCATCGAC | 57.208 | 47.619 | 0.00 | 0.00 | 35.17 | 4.20 |
1904 | 3753 | 1.344438 | TGTAACTGAGGACTGTGCCTG | 59.656 | 52.381 | 0.00 | 0.00 | 38.73 | 4.85 |
2015 | 3873 | 7.147742 | GGAGAAGTCAGAACAAAGGAGATCTAT | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 1.98 |
2016 | 3874 | 8.830915 | AGAAGTCAGAACAAAGGAGATCTATA | 57.169 | 34.615 | 0.00 | 0.00 | 0.00 | 1.31 |
2062 | 3922 | 6.431234 | AGATTATTTCGTGAAAAGCCTGTTCT | 59.569 | 34.615 | 0.00 | 0.00 | 33.56 | 3.01 |
2063 | 3923 | 3.691049 | TTTCGTGAAAAGCCTGTTCTG | 57.309 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
2064 | 3924 | 0.944386 | TCGTGAAAAGCCTGTTCTGC | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2065 | 3925 | 0.947244 | CGTGAAAAGCCTGTTCTGCT | 59.053 | 50.000 | 0.00 | 0.00 | 41.89 | 4.24 |
2066 | 3926 | 2.143122 | CGTGAAAAGCCTGTTCTGCTA | 58.857 | 47.619 | 0.00 | 0.00 | 38.34 | 3.49 |
2067 | 3927 | 2.096218 | CGTGAAAAGCCTGTTCTGCTAC | 60.096 | 50.000 | 0.00 | 0.00 | 38.34 | 3.58 |
2068 | 3928 | 2.226674 | GTGAAAAGCCTGTTCTGCTACC | 59.773 | 50.000 | 0.00 | 0.00 | 38.34 | 3.18 |
2069 | 3929 | 2.106511 | TGAAAAGCCTGTTCTGCTACCT | 59.893 | 45.455 | 0.00 | 0.00 | 38.34 | 3.08 |
2070 | 3930 | 2.481289 | AAAGCCTGTTCTGCTACCTC | 57.519 | 50.000 | 0.00 | 0.00 | 38.34 | 3.85 |
2071 | 3931 | 0.615850 | AAGCCTGTTCTGCTACCTCC | 59.384 | 55.000 | 0.00 | 0.00 | 38.34 | 4.30 |
2178 | 4080 | 2.156051 | GACGCGGTTGGTTCCTCTCT | 62.156 | 60.000 | 12.47 | 0.00 | 0.00 | 3.10 |
2262 | 6294 | 1.472480 | CTAACACGCCAAATCCAAGGG | 59.528 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
2303 | 6335 | 5.728741 | AGAGACTAAGATTGATGGGTTTCCT | 59.271 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2304 | 6336 | 6.903534 | AGAGACTAAGATTGATGGGTTTCCTA | 59.096 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
2306 | 6338 | 7.928873 | AGACTAAGATTGATGGGTTTCCTAAA | 58.071 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2307 | 6339 | 8.560903 | AGACTAAGATTGATGGGTTTCCTAAAT | 58.439 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2308 | 6340 | 9.190317 | GACTAAGATTGATGGGTTTCCTAAATT | 57.810 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2309 | 6341 | 8.971073 | ACTAAGATTGATGGGTTTCCTAAATTG | 58.029 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2310 | 6342 | 9.189156 | CTAAGATTGATGGGTTTCCTAAATTGA | 57.811 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2311 | 6343 | 8.613922 | AAGATTGATGGGTTTCCTAAATTGAT | 57.386 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
2312 | 6344 | 8.613922 | AGATTGATGGGTTTCCTAAATTGATT | 57.386 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
2313 | 6345 | 8.480501 | AGATTGATGGGTTTCCTAAATTGATTG | 58.519 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
2398 | 6821 | 2.230025 | CCTGATGGAGGCATAGAGTACG | 59.770 | 54.545 | 0.00 | 0.00 | 34.01 | 3.67 |
2399 | 6822 | 2.887783 | CTGATGGAGGCATAGAGTACGT | 59.112 | 50.000 | 0.00 | 0.00 | 0.00 | 3.57 |
2400 | 6823 | 4.072839 | CTGATGGAGGCATAGAGTACGTA | 58.927 | 47.826 | 0.00 | 0.00 | 0.00 | 3.57 |
2401 | 6824 | 3.819337 | TGATGGAGGCATAGAGTACGTAC | 59.181 | 47.826 | 18.10 | 18.10 | 0.00 | 3.67 |
2427 | 6850 | 9.020813 | CCTTCGATAATATATACCACATCGTTG | 57.979 | 37.037 | 12.82 | 0.00 | 37.24 | 4.10 |
2429 | 6852 | 9.917129 | TTCGATAATATATACCACATCGTTGTT | 57.083 | 29.630 | 0.00 | 0.00 | 37.24 | 2.83 |
2442 | 6865 | 9.880157 | ACCACATCGTTGTTATAACTTAATACT | 57.120 | 29.630 | 16.33 | 0.00 | 32.34 | 2.12 |
2469 | 6892 | 8.358148 | ACCTGTTATGTTGAGTAGTATAATCCG | 58.642 | 37.037 | 0.00 | 0.00 | 34.16 | 4.18 |
2470 | 6893 | 8.358148 | CCTGTTATGTTGAGTAGTATAATCCGT | 58.642 | 37.037 | 0.00 | 0.00 | 34.16 | 4.69 |
2473 | 6896 | 9.617975 | GTTATGTTGAGTAGTATAATCCGTACC | 57.382 | 37.037 | 0.00 | 0.00 | 34.16 | 3.34 |
2474 | 6897 | 6.304356 | TGTTGAGTAGTATAATCCGTACCG | 57.696 | 41.667 | 0.00 | 0.00 | 34.16 | 4.02 |
2475 | 6898 | 5.822519 | TGTTGAGTAGTATAATCCGTACCGT | 59.177 | 40.000 | 0.00 | 0.00 | 34.16 | 4.83 |
2476 | 6899 | 6.989759 | TGTTGAGTAGTATAATCCGTACCGTA | 59.010 | 38.462 | 0.00 | 0.00 | 34.16 | 4.02 |
2477 | 6900 | 7.661437 | TGTTGAGTAGTATAATCCGTACCGTAT | 59.339 | 37.037 | 0.00 | 0.00 | 34.16 | 3.06 |
2478 | 6901 | 7.601073 | TGAGTAGTATAATCCGTACCGTATG | 57.399 | 40.000 | 0.00 | 0.00 | 34.16 | 2.39 |
2479 | 6902 | 7.161404 | TGAGTAGTATAATCCGTACCGTATGT | 58.839 | 38.462 | 0.00 | 0.00 | 34.16 | 2.29 |
2480 | 6903 | 8.311109 | TGAGTAGTATAATCCGTACCGTATGTA | 58.689 | 37.037 | 0.00 | 0.00 | 34.16 | 2.29 |
2481 | 6904 | 8.480643 | AGTAGTATAATCCGTACCGTATGTAC | 57.519 | 38.462 | 0.00 | 0.00 | 45.31 | 2.90 |
2482 | 6905 | 6.743575 | AGTATAATCCGTACCGTATGTACC | 57.256 | 41.667 | 0.00 | 0.00 | 45.89 | 3.34 |
2483 | 6906 | 4.685169 | ATAATCCGTACCGTATGTACCG | 57.315 | 45.455 | 0.00 | 0.00 | 45.89 | 4.02 |
2484 | 6907 | 1.967319 | ATCCGTACCGTATGTACCGT | 58.033 | 50.000 | 0.00 | 0.00 | 45.89 | 4.83 |
2485 | 6908 | 2.605837 | TCCGTACCGTATGTACCGTA | 57.394 | 50.000 | 0.00 | 0.00 | 45.89 | 4.02 |
2486 | 6909 | 2.907634 | TCCGTACCGTATGTACCGTAA | 58.092 | 47.619 | 0.00 | 0.00 | 45.89 | 3.18 |
2487 | 6910 | 3.271729 | TCCGTACCGTATGTACCGTAAA | 58.728 | 45.455 | 0.00 | 0.00 | 45.89 | 2.01 |
2488 | 6911 | 3.690139 | TCCGTACCGTATGTACCGTAAAA | 59.310 | 43.478 | 0.00 | 0.00 | 45.89 | 1.52 |
2489 | 6912 | 4.156190 | TCCGTACCGTATGTACCGTAAAAA | 59.844 | 41.667 | 0.00 | 0.00 | 45.89 | 1.94 |
2557 | 6980 | 0.888285 | GCAAGTTCAGCCTGCAGACT | 60.888 | 55.000 | 17.39 | 5.81 | 0.00 | 3.24 |
2559 | 6982 | 2.344950 | CAAGTTCAGCCTGCAGACTAG | 58.655 | 52.381 | 17.39 | 4.18 | 0.00 | 2.57 |
2569 | 6992 | 1.279496 | TGCAGACTAGCAGATGGGTT | 58.721 | 50.000 | 0.00 | 0.00 | 40.11 | 4.11 |
2578 | 7001 | 4.594920 | ACTAGCAGATGGGTTGTAGCATAT | 59.405 | 41.667 | 0.00 | 0.00 | 31.27 | 1.78 |
2603 | 7026 | 2.693591 | TCCTACACTGCATAGTACTGCC | 59.306 | 50.000 | 5.39 | 0.00 | 41.58 | 4.85 |
2651 | 7074 | 3.623960 | TGTATATGTTTGCCAACGCTACC | 59.376 | 43.478 | 0.00 | 0.00 | 35.40 | 3.18 |
2652 | 7075 | 2.483014 | TATGTTTGCCAACGCTACCT | 57.517 | 45.000 | 0.00 | 0.00 | 35.40 | 3.08 |
2653 | 7076 | 1.616159 | ATGTTTGCCAACGCTACCTT | 58.384 | 45.000 | 0.00 | 0.00 | 35.40 | 3.50 |
2654 | 7077 | 0.948678 | TGTTTGCCAACGCTACCTTC | 59.051 | 50.000 | 0.00 | 0.00 | 35.40 | 3.46 |
2655 | 7078 | 0.240145 | GTTTGCCAACGCTACCTTCC | 59.760 | 55.000 | 0.00 | 0.00 | 35.36 | 3.46 |
2656 | 7079 | 0.109723 | TTTGCCAACGCTACCTTCCT | 59.890 | 50.000 | 0.00 | 0.00 | 35.36 | 3.36 |
2657 | 7080 | 0.978151 | TTGCCAACGCTACCTTCCTA | 59.022 | 50.000 | 0.00 | 0.00 | 35.36 | 2.94 |
2658 | 7081 | 0.535335 | TGCCAACGCTACCTTCCTAG | 59.465 | 55.000 | 0.00 | 0.00 | 35.36 | 3.02 |
2659 | 7082 | 0.810426 | GCCAACGCTACCTTCCTAGC | 60.810 | 60.000 | 0.00 | 0.00 | 36.53 | 3.42 |
2660 | 7083 | 0.824759 | CCAACGCTACCTTCCTAGCT | 59.175 | 55.000 | 0.00 | 0.00 | 37.57 | 3.32 |
2661 | 7084 | 2.029623 | CCAACGCTACCTTCCTAGCTA | 58.970 | 52.381 | 0.00 | 0.00 | 37.57 | 3.32 |
2662 | 7085 | 2.223758 | CCAACGCTACCTTCCTAGCTAC | 60.224 | 54.545 | 0.00 | 0.00 | 37.57 | 3.58 |
2663 | 7086 | 1.689984 | ACGCTACCTTCCTAGCTACC | 58.310 | 55.000 | 0.00 | 0.00 | 37.57 | 3.18 |
2664 | 7087 | 0.960286 | CGCTACCTTCCTAGCTACCC | 59.040 | 60.000 | 0.00 | 0.00 | 37.57 | 3.69 |
2665 | 7088 | 1.753141 | CGCTACCTTCCTAGCTACCCA | 60.753 | 57.143 | 0.00 | 0.00 | 37.57 | 4.51 |
2666 | 7089 | 2.610873 | GCTACCTTCCTAGCTACCCAT | 58.389 | 52.381 | 0.00 | 0.00 | 36.88 | 4.00 |
2667 | 7090 | 2.563620 | GCTACCTTCCTAGCTACCCATC | 59.436 | 54.545 | 0.00 | 0.00 | 36.88 | 3.51 |
2668 | 7091 | 2.104669 | ACCTTCCTAGCTACCCATCC | 57.895 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2669 | 7092 | 1.294068 | ACCTTCCTAGCTACCCATCCA | 59.706 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2670 | 7093 | 1.694696 | CCTTCCTAGCTACCCATCCAC | 59.305 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
2671 | 7094 | 1.341531 | CTTCCTAGCTACCCATCCACG | 59.658 | 57.143 | 0.00 | 0.00 | 0.00 | 4.94 |
2672 | 7095 | 1.113517 | TCCTAGCTACCCATCCACGC | 61.114 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2673 | 7096 | 1.007271 | CTAGCTACCCATCCACGCG | 60.007 | 63.158 | 3.53 | 3.53 | 0.00 | 6.01 |
2674 | 7097 | 1.735376 | CTAGCTACCCATCCACGCGT | 61.735 | 60.000 | 5.58 | 5.58 | 0.00 | 6.01 |
2675 | 7098 | 1.731433 | TAGCTACCCATCCACGCGTC | 61.731 | 60.000 | 9.86 | 0.00 | 0.00 | 5.19 |
2676 | 7099 | 2.106332 | CTACCCATCCACGCGTCC | 59.894 | 66.667 | 9.86 | 0.00 | 0.00 | 4.79 |
2677 | 7100 | 2.680707 | TACCCATCCACGCGTCCA | 60.681 | 61.111 | 9.86 | 0.00 | 0.00 | 4.02 |
2678 | 7101 | 2.028125 | CTACCCATCCACGCGTCCAT | 62.028 | 60.000 | 9.86 | 0.00 | 0.00 | 3.41 |
2679 | 7102 | 2.023414 | TACCCATCCACGCGTCCATC | 62.023 | 60.000 | 9.86 | 0.00 | 0.00 | 3.51 |
2680 | 7103 | 2.588877 | CCATCCACGCGTCCATCC | 60.589 | 66.667 | 9.86 | 0.00 | 0.00 | 3.51 |
2681 | 7104 | 2.588877 | CATCCACGCGTCCATCCC | 60.589 | 66.667 | 9.86 | 0.00 | 0.00 | 3.85 |
2682 | 7105 | 2.764128 | ATCCACGCGTCCATCCCT | 60.764 | 61.111 | 9.86 | 0.00 | 0.00 | 4.20 |
2683 | 7106 | 2.797278 | ATCCACGCGTCCATCCCTC | 61.797 | 63.158 | 9.86 | 0.00 | 0.00 | 4.30 |
2684 | 7107 | 4.530857 | CCACGCGTCCATCCCTCC | 62.531 | 72.222 | 9.86 | 0.00 | 0.00 | 4.30 |
2685 | 7108 | 3.770040 | CACGCGTCCATCCCTCCA | 61.770 | 66.667 | 9.86 | 0.00 | 0.00 | 3.86 |
2686 | 7109 | 2.764128 | ACGCGTCCATCCCTCCAT | 60.764 | 61.111 | 5.58 | 0.00 | 0.00 | 3.41 |
2687 | 7110 | 2.029666 | CGCGTCCATCCCTCCATC | 59.970 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2688 | 7111 | 2.029666 | GCGTCCATCCCTCCATCG | 59.970 | 66.667 | 0.00 | 0.00 | 0.00 | 3.84 |
2689 | 7112 | 2.029666 | CGTCCATCCCTCCATCGC | 59.970 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
2690 | 7113 | 2.502492 | CGTCCATCCCTCCATCGCT | 61.502 | 63.158 | 0.00 | 0.00 | 0.00 | 4.93 |
2691 | 7114 | 1.070445 | GTCCATCCCTCCATCGCTG | 59.930 | 63.158 | 0.00 | 0.00 | 0.00 | 5.18 |
2692 | 7115 | 2.281345 | CCATCCCTCCATCGCTGC | 60.281 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
2693 | 7116 | 2.664185 | CATCCCTCCATCGCTGCG | 60.664 | 66.667 | 17.25 | 17.25 | 0.00 | 5.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
73 | 75 | 7.990886 | TGAACAGTGAATTCCAACTAAAGTAGT | 59.009 | 33.333 | 2.27 | 0.00 | 41.73 | 2.73 |
135 | 142 | 6.163476 | TCATGCTTAGTTGATTCGTAACACT | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
227 | 808 | 9.640952 | CTGTATTTTCTTTTCCCCCTATCAATA | 57.359 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
269 | 860 | 0.981183 | TACACTCTTTGGGACGCCAT | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
359 | 1233 | 5.333721 | GCATTTTTGTCACGTAAATTTGGGG | 60.334 | 40.000 | 0.00 | 0.00 | 0.00 | 4.96 |
399 | 1273 | 4.108501 | AGCCATGATTCATTCCATGCTA | 57.891 | 40.909 | 0.00 | 0.00 | 38.95 | 3.49 |
433 | 1307 | 5.450137 | GCAGTCCTATTCTAAAGCTGACGTA | 60.450 | 44.000 | 0.00 | 0.00 | 0.00 | 3.57 |
440 | 1314 | 3.782046 | TCACGCAGTCCTATTCTAAAGC | 58.218 | 45.455 | 0.00 | 0.00 | 41.61 | 3.51 |
594 | 2227 | 4.386049 | AGAACGCGTCACTAGAAAATGAAG | 59.614 | 41.667 | 14.44 | 0.00 | 0.00 | 3.02 |
595 | 2228 | 4.149922 | CAGAACGCGTCACTAGAAAATGAA | 59.850 | 41.667 | 14.44 | 0.00 | 0.00 | 2.57 |
596 | 2229 | 3.673338 | CAGAACGCGTCACTAGAAAATGA | 59.327 | 43.478 | 14.44 | 0.00 | 0.00 | 2.57 |
597 | 2230 | 3.181530 | CCAGAACGCGTCACTAGAAAATG | 60.182 | 47.826 | 14.44 | 2.66 | 0.00 | 2.32 |
600 | 2233 | 1.933500 | GCCAGAACGCGTCACTAGAAA | 60.934 | 52.381 | 14.44 | 0.00 | 0.00 | 2.52 |
601 | 2234 | 0.388134 | GCCAGAACGCGTCACTAGAA | 60.388 | 55.000 | 14.44 | 0.00 | 0.00 | 2.10 |
602 | 2235 | 1.211969 | GCCAGAACGCGTCACTAGA | 59.788 | 57.895 | 14.44 | 0.00 | 0.00 | 2.43 |
603 | 2236 | 3.768632 | GCCAGAACGCGTCACTAG | 58.231 | 61.111 | 14.44 | 9.80 | 0.00 | 2.57 |
619 | 2252 | 2.094066 | CAAAATTTCAGGGCGGCGC | 61.094 | 57.895 | 26.17 | 26.17 | 0.00 | 6.53 |
620 | 2253 | 1.008361 | CACAAAATTTCAGGGCGGCG | 61.008 | 55.000 | 0.51 | 0.51 | 0.00 | 6.46 |
621 | 2254 | 0.033366 | ACACAAAATTTCAGGGCGGC | 59.967 | 50.000 | 0.00 | 0.00 | 0.00 | 6.53 |
622 | 2255 | 1.336795 | GGACACAAAATTTCAGGGCGG | 60.337 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
623 | 2256 | 1.613437 | AGGACACAAAATTTCAGGGCG | 59.387 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
624 | 2257 | 2.351738 | CGAGGACACAAAATTTCAGGGC | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
625 | 2258 | 3.146066 | TCGAGGACACAAAATTTCAGGG | 58.854 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
626 | 2259 | 5.156355 | CAATCGAGGACACAAAATTTCAGG | 58.844 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
627 | 2260 | 5.626543 | CACAATCGAGGACACAAAATTTCAG | 59.373 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
628 | 2261 | 5.298026 | TCACAATCGAGGACACAAAATTTCA | 59.702 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
629 | 2262 | 5.757886 | TCACAATCGAGGACACAAAATTTC | 58.242 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
630 | 2263 | 5.766150 | TCACAATCGAGGACACAAAATTT | 57.234 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
631 | 2264 | 5.530915 | TCTTCACAATCGAGGACACAAAATT | 59.469 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
632 | 2265 | 5.063204 | TCTTCACAATCGAGGACACAAAAT | 58.937 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
633 | 2266 | 4.447290 | TCTTCACAATCGAGGACACAAAA | 58.553 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
634 | 2267 | 4.066646 | TCTTCACAATCGAGGACACAAA | 57.933 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
635 | 2268 | 3.744238 | TCTTCACAATCGAGGACACAA | 57.256 | 42.857 | 0.00 | 0.00 | 0.00 | 3.33 |
636 | 2269 | 3.006859 | ACATCTTCACAATCGAGGACACA | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
637 | 2270 | 3.589988 | ACATCTTCACAATCGAGGACAC | 58.410 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
638 | 2271 | 3.961480 | ACATCTTCACAATCGAGGACA | 57.039 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
639 | 2272 | 6.910536 | AATAACATCTTCACAATCGAGGAC | 57.089 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
640 | 2273 | 6.538742 | GGAAATAACATCTTCACAATCGAGGA | 59.461 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
641 | 2274 | 6.316140 | TGGAAATAACATCTTCACAATCGAGG | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
642 | 2275 | 7.148423 | TGTGGAAATAACATCTTCACAATCGAG | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 4.04 |
643 | 2276 | 6.652900 | TGTGGAAATAACATCTTCACAATCGA | 59.347 | 34.615 | 0.00 | 0.00 | 0.00 | 3.59 |
644 | 2277 | 6.841119 | TGTGGAAATAACATCTTCACAATCG | 58.159 | 36.000 | 0.00 | 0.00 | 0.00 | 3.34 |
661 | 2294 | 9.531158 | TGGCATTGATCAATATATATGTGGAAA | 57.469 | 29.630 | 20.32 | 0.00 | 0.00 | 3.13 |
662 | 2295 | 9.181061 | CTGGCATTGATCAATATATATGTGGAA | 57.819 | 33.333 | 20.32 | 0.00 | 0.00 | 3.53 |
663 | 2296 | 7.776500 | CCTGGCATTGATCAATATATATGTGGA | 59.224 | 37.037 | 20.32 | 0.00 | 0.00 | 4.02 |
664 | 2297 | 7.776500 | TCCTGGCATTGATCAATATATATGTGG | 59.224 | 37.037 | 20.32 | 13.50 | 0.00 | 4.17 |
665 | 2298 | 8.741603 | TCCTGGCATTGATCAATATATATGTG | 57.258 | 34.615 | 20.32 | 8.65 | 0.00 | 3.21 |
666 | 2299 | 9.931698 | ATTCCTGGCATTGATCAATATATATGT | 57.068 | 29.630 | 20.32 | 2.01 | 0.00 | 2.29 |
668 | 2301 | 8.857098 | GCATTCCTGGCATTGATCAATATATAT | 58.143 | 33.333 | 20.32 | 5.84 | 0.00 | 0.86 |
669 | 2302 | 7.286087 | GGCATTCCTGGCATTGATCAATATATA | 59.714 | 37.037 | 20.32 | 7.06 | 46.77 | 0.86 |
670 | 2303 | 6.097839 | GGCATTCCTGGCATTGATCAATATAT | 59.902 | 38.462 | 20.32 | 0.00 | 46.77 | 0.86 |
671 | 2304 | 5.419788 | GGCATTCCTGGCATTGATCAATATA | 59.580 | 40.000 | 20.32 | 9.01 | 46.77 | 0.86 |
672 | 2305 | 4.222145 | GGCATTCCTGGCATTGATCAATAT | 59.778 | 41.667 | 20.32 | 6.23 | 46.77 | 1.28 |
673 | 2306 | 3.575256 | GGCATTCCTGGCATTGATCAATA | 59.425 | 43.478 | 20.32 | 4.98 | 46.77 | 1.90 |
674 | 2307 | 2.367567 | GGCATTCCTGGCATTGATCAAT | 59.632 | 45.455 | 15.36 | 15.36 | 46.77 | 2.57 |
675 | 2308 | 1.758280 | GGCATTCCTGGCATTGATCAA | 59.242 | 47.619 | 11.26 | 11.26 | 46.77 | 2.57 |
676 | 2309 | 1.405872 | GGCATTCCTGGCATTGATCA | 58.594 | 50.000 | 0.00 | 0.00 | 46.77 | 2.92 |
688 | 2321 | 2.354103 | GCCAAGAAAAAGAGGGCATTCC | 60.354 | 50.000 | 0.00 | 0.00 | 44.01 | 3.01 |
689 | 2322 | 2.354103 | GGCCAAGAAAAAGAGGGCATTC | 60.354 | 50.000 | 0.00 | 0.00 | 46.37 | 2.67 |
690 | 2323 | 1.625315 | GGCCAAGAAAAAGAGGGCATT | 59.375 | 47.619 | 0.00 | 0.00 | 46.37 | 3.56 |
691 | 2324 | 1.269958 | GGCCAAGAAAAAGAGGGCAT | 58.730 | 50.000 | 0.00 | 0.00 | 46.37 | 4.40 |
692 | 2325 | 1.178534 | CGGCCAAGAAAAAGAGGGCA | 61.179 | 55.000 | 2.24 | 0.00 | 46.37 | 5.36 |
693 | 2326 | 1.179174 | ACGGCCAAGAAAAAGAGGGC | 61.179 | 55.000 | 2.24 | 0.00 | 43.86 | 5.19 |
694 | 2327 | 0.881796 | GACGGCCAAGAAAAAGAGGG | 59.118 | 55.000 | 2.24 | 0.00 | 0.00 | 4.30 |
695 | 2328 | 1.266989 | GTGACGGCCAAGAAAAAGAGG | 59.733 | 52.381 | 2.24 | 0.00 | 0.00 | 3.69 |
696 | 2329 | 1.946768 | TGTGACGGCCAAGAAAAAGAG | 59.053 | 47.619 | 2.24 | 0.00 | 0.00 | 2.85 |
697 | 2330 | 1.673920 | GTGTGACGGCCAAGAAAAAGA | 59.326 | 47.619 | 2.24 | 0.00 | 0.00 | 2.52 |
698 | 2331 | 1.403679 | TGTGTGACGGCCAAGAAAAAG | 59.596 | 47.619 | 2.24 | 0.00 | 0.00 | 2.27 |
699 | 2332 | 1.464734 | TGTGTGACGGCCAAGAAAAA | 58.535 | 45.000 | 2.24 | 0.00 | 0.00 | 1.94 |
700 | 2333 | 1.686355 | ATGTGTGACGGCCAAGAAAA | 58.314 | 45.000 | 2.24 | 0.00 | 0.00 | 2.29 |
701 | 2334 | 2.147958 | GTATGTGTGACGGCCAAGAAA | 58.852 | 47.619 | 2.24 | 0.00 | 0.00 | 2.52 |
702 | 2335 | 1.803334 | GTATGTGTGACGGCCAAGAA | 58.197 | 50.000 | 2.24 | 0.00 | 0.00 | 2.52 |
703 | 2336 | 0.389296 | CGTATGTGTGACGGCCAAGA | 60.389 | 55.000 | 2.24 | 0.00 | 36.66 | 3.02 |
704 | 2337 | 0.389296 | TCGTATGTGTGACGGCCAAG | 60.389 | 55.000 | 2.24 | 0.00 | 40.70 | 3.61 |
705 | 2338 | 0.248012 | ATCGTATGTGTGACGGCCAA | 59.752 | 50.000 | 2.24 | 0.00 | 40.70 | 4.52 |
706 | 2339 | 1.104630 | TATCGTATGTGTGACGGCCA | 58.895 | 50.000 | 2.24 | 0.00 | 40.70 | 5.36 |
707 | 2340 | 1.484356 | GTATCGTATGTGTGACGGCC | 58.516 | 55.000 | 0.00 | 0.00 | 40.70 | 6.13 |
708 | 2341 | 1.118033 | CGTATCGTATGTGTGACGGC | 58.882 | 55.000 | 0.00 | 0.00 | 40.70 | 5.68 |
709 | 2342 | 1.750351 | CCGTATCGTATGTGTGACGG | 58.250 | 55.000 | 0.00 | 0.00 | 43.27 | 4.79 |
710 | 2343 | 1.118033 | GCCGTATCGTATGTGTGACG | 58.882 | 55.000 | 0.00 | 0.00 | 41.69 | 4.35 |
711 | 2344 | 2.197792 | TGCCGTATCGTATGTGTGAC | 57.802 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
712 | 2345 | 2.738135 | CATGCCGTATCGTATGTGTGA | 58.262 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
713 | 2346 | 1.192312 | GCATGCCGTATCGTATGTGTG | 59.808 | 52.381 | 6.36 | 0.00 | 0.00 | 3.82 |
714 | 2347 | 1.497991 | GCATGCCGTATCGTATGTGT | 58.502 | 50.000 | 6.36 | 0.00 | 0.00 | 3.72 |
715 | 2348 | 0.790207 | GGCATGCCGTATCGTATGTG | 59.210 | 55.000 | 23.48 | 0.00 | 0.00 | 3.21 |
716 | 2349 | 0.391228 | TGGCATGCCGTATCGTATGT | 59.609 | 50.000 | 30.87 | 0.00 | 39.42 | 2.29 |
717 | 2350 | 0.790207 | GTGGCATGCCGTATCGTATG | 59.210 | 55.000 | 30.87 | 0.00 | 39.42 | 2.39 |
718 | 2351 | 0.391228 | TGTGGCATGCCGTATCGTAT | 59.609 | 50.000 | 30.87 | 0.00 | 39.42 | 3.06 |
719 | 2352 | 0.528901 | GTGTGGCATGCCGTATCGTA | 60.529 | 55.000 | 30.87 | 9.56 | 39.42 | 3.43 |
720 | 2353 | 1.813753 | GTGTGGCATGCCGTATCGT | 60.814 | 57.895 | 30.87 | 0.00 | 39.42 | 3.73 |
721 | 2354 | 2.870341 | CGTGTGGCATGCCGTATCG | 61.870 | 63.158 | 30.87 | 25.53 | 39.42 | 2.92 |
722 | 2355 | 2.534019 | CCGTGTGGCATGCCGTATC | 61.534 | 63.158 | 30.87 | 20.29 | 39.42 | 2.24 |
723 | 2356 | 2.513666 | CCGTGTGGCATGCCGTAT | 60.514 | 61.111 | 30.87 | 0.00 | 39.42 | 3.06 |
733 | 2366 | 1.008995 | CCTTGTTTTCGCCGTGTGG | 60.009 | 57.895 | 0.00 | 0.00 | 38.77 | 4.17 |
734 | 2367 | 0.041312 | CTCCTTGTTTTCGCCGTGTG | 60.041 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
735 | 2368 | 1.782028 | GCTCCTTGTTTTCGCCGTGT | 61.782 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
736 | 2369 | 1.082104 | GCTCCTTGTTTTCGCCGTG | 60.082 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
737 | 2370 | 2.604174 | CGCTCCTTGTTTTCGCCGT | 61.604 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
738 | 2371 | 2.173382 | CGCTCCTTGTTTTCGCCG | 59.827 | 61.111 | 0.00 | 0.00 | 0.00 | 6.46 |
739 | 2372 | 2.561373 | CCGCTCCTTGTTTTCGCC | 59.439 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
740 | 2373 | 2.561373 | CCCGCTCCTTGTTTTCGC | 59.439 | 61.111 | 0.00 | 0.00 | 0.00 | 4.70 |
741 | 2374 | 2.332654 | CCCCCGCTCCTTGTTTTCG | 61.333 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
742 | 2375 | 2.636412 | GCCCCCGCTCCTTGTTTTC | 61.636 | 63.158 | 0.00 | 0.00 | 0.00 | 2.29 |
743 | 2376 | 2.600470 | GCCCCCGCTCCTTGTTTT | 60.600 | 61.111 | 0.00 | 0.00 | 0.00 | 2.43 |
744 | 2377 | 3.897122 | TGCCCCCGCTCCTTGTTT | 61.897 | 61.111 | 0.00 | 0.00 | 35.36 | 2.83 |
745 | 2378 | 4.660938 | GTGCCCCCGCTCCTTGTT | 62.661 | 66.667 | 0.00 | 0.00 | 35.36 | 2.83 |
761 | 2394 | 0.888619 | TTCGTCCATCTTGCTCGAGT | 59.111 | 50.000 | 15.13 | 0.00 | 32.39 | 4.18 |
790 | 2463 | 1.192428 | CTACTAACCAACCCCGCTCT | 58.808 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
799 | 2472 | 4.042311 | TGTTTGGCTCCATCTACTAACCAA | 59.958 | 41.667 | 0.00 | 0.00 | 34.06 | 3.67 |
821 | 2515 | 2.223021 | CCATGGTATCGTCGTTTGCTTG | 60.223 | 50.000 | 2.57 | 0.00 | 0.00 | 4.01 |
825 | 2519 | 2.018542 | ACCCATGGTATCGTCGTTTG | 57.981 | 50.000 | 11.73 | 0.00 | 32.11 | 2.93 |
866 | 2596 | 1.765074 | GAAGCAGTGGTAACCCCCA | 59.235 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
885 | 2629 | 3.616802 | GCCCGTGCTCTCCTATTTATACC | 60.617 | 52.174 | 0.00 | 0.00 | 33.53 | 2.73 |
1005 | 2756 | 3.934391 | CTCCTGGTGGTCGCCGAAC | 62.934 | 68.421 | 0.00 | 0.00 | 34.23 | 3.95 |
1197 | 2960 | 5.972935 | TGATTAGTTTCTGCCGATCACTAA | 58.027 | 37.500 | 10.79 | 10.79 | 33.37 | 2.24 |
1280 | 3050 | 2.816958 | CGTCCAAGCTGAGCGCAT | 60.817 | 61.111 | 11.47 | 0.00 | 42.61 | 4.73 |
1422 | 3194 | 1.337728 | TGCATCAACGAGGACACGATT | 60.338 | 47.619 | 0.00 | 0.00 | 37.03 | 3.34 |
1435 | 3213 | 1.164411 | CAGCCCGTTAGTTGCATCAA | 58.836 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1444 | 3222 | 3.069586 | TCATACAGATTCCAGCCCGTTAG | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 2.34 |
1593 | 3380 | 2.124570 | CGATGCAGTCCTTGGGGG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 5.40 |
1595 | 3382 | 1.450312 | GGTCGATGCAGTCCTTGGG | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 4.12 |
1650 | 3440 | 4.980592 | TGCAGTGGAGGAGCCCCA | 62.981 | 66.667 | 0.00 | 0.00 | 34.97 | 4.96 |
1734 | 3524 | 5.935206 | TGTTTACTCATACAATTTCCTCGCA | 59.065 | 36.000 | 0.00 | 0.00 | 0.00 | 5.10 |
1967 | 3820 | 2.237143 | CAGGAGTAATGTTGGAGCTCCA | 59.763 | 50.000 | 32.00 | 32.00 | 45.92 | 3.86 |
2062 | 3922 | 3.844211 | ACCATGTTTCTTAGGAGGTAGCA | 59.156 | 43.478 | 0.00 | 0.00 | 0.00 | 3.49 |
2063 | 3923 | 4.489306 | ACCATGTTTCTTAGGAGGTAGC | 57.511 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
2064 | 3924 | 5.880887 | GGAAACCATGTTTCTTAGGAGGTAG | 59.119 | 44.000 | 16.62 | 0.00 | 0.00 | 3.18 |
2065 | 3925 | 5.550403 | AGGAAACCATGTTTCTTAGGAGGTA | 59.450 | 40.000 | 16.62 | 0.00 | 0.00 | 3.08 |
2066 | 3926 | 4.354087 | AGGAAACCATGTTTCTTAGGAGGT | 59.646 | 41.667 | 16.62 | 0.00 | 0.00 | 3.85 |
2067 | 3927 | 4.923415 | AGGAAACCATGTTTCTTAGGAGG | 58.077 | 43.478 | 16.62 | 0.00 | 0.00 | 4.30 |
2068 | 3928 | 5.122396 | CGAAGGAAACCATGTTTCTTAGGAG | 59.878 | 44.000 | 16.62 | 3.96 | 0.00 | 3.69 |
2069 | 3929 | 5.001232 | CGAAGGAAACCATGTTTCTTAGGA | 58.999 | 41.667 | 16.62 | 0.00 | 0.00 | 2.94 |
2070 | 3930 | 5.001232 | TCGAAGGAAACCATGTTTCTTAGG | 58.999 | 41.667 | 16.62 | 7.38 | 0.00 | 2.69 |
2071 | 3931 | 6.743575 | ATCGAAGGAAACCATGTTTCTTAG | 57.256 | 37.500 | 16.62 | 9.20 | 0.00 | 2.18 |
2178 | 4080 | 2.477972 | CTTCTCACGGTCTCGCAGCA | 62.478 | 60.000 | 0.00 | 0.00 | 40.63 | 4.41 |
2303 | 6335 | 6.798482 | AGCTGCGATCAATTCAATCAATTTA | 58.202 | 32.000 | 0.00 | 0.00 | 31.79 | 1.40 |
2304 | 6336 | 5.657474 | AGCTGCGATCAATTCAATCAATTT | 58.343 | 33.333 | 0.00 | 0.00 | 31.79 | 1.82 |
2306 | 6338 | 4.913335 | AGCTGCGATCAATTCAATCAAT | 57.087 | 36.364 | 0.00 | 0.00 | 0.00 | 2.57 |
2307 | 6339 | 4.707030 | AAGCTGCGATCAATTCAATCAA | 57.293 | 36.364 | 0.00 | 0.00 | 0.00 | 2.57 |
2308 | 6340 | 4.397103 | AGAAAGCTGCGATCAATTCAATCA | 59.603 | 37.500 | 9.73 | 0.00 | 0.00 | 2.57 |
2309 | 6341 | 4.733887 | CAGAAAGCTGCGATCAATTCAATC | 59.266 | 41.667 | 9.73 | 0.00 | 34.95 | 2.67 |
2310 | 6342 | 4.669318 | CAGAAAGCTGCGATCAATTCAAT | 58.331 | 39.130 | 9.73 | 0.00 | 34.95 | 2.57 |
2311 | 6343 | 4.087510 | CAGAAAGCTGCGATCAATTCAA | 57.912 | 40.909 | 9.73 | 0.00 | 34.95 | 2.69 |
2312 | 6344 | 3.752412 | CAGAAAGCTGCGATCAATTCA | 57.248 | 42.857 | 9.73 | 0.00 | 34.95 | 2.57 |
2333 | 6365 | 4.793216 | CGTTTTTATTTGATGAGAAGGGCG | 59.207 | 41.667 | 0.00 | 0.00 | 0.00 | 6.13 |
2398 | 6821 | 9.661187 | CGATGTGGTATATATTATCGAAGGTAC | 57.339 | 37.037 | 11.92 | 0.00 | 39.60 | 3.34 |
2399 | 6822 | 9.399797 | ACGATGTGGTATATATTATCGAAGGTA | 57.600 | 33.333 | 18.89 | 0.00 | 39.60 | 3.08 |
2400 | 6823 | 8.289939 | ACGATGTGGTATATATTATCGAAGGT | 57.710 | 34.615 | 18.89 | 3.72 | 39.60 | 3.50 |
2401 | 6824 | 9.020813 | CAACGATGTGGTATATATTATCGAAGG | 57.979 | 37.037 | 18.89 | 9.72 | 39.60 | 3.46 |
2443 | 6866 | 8.358148 | CGGATTATACTACTCAACATAACAGGT | 58.642 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
2444 | 6867 | 8.358148 | ACGGATTATACTACTCAACATAACAGG | 58.642 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
2447 | 6870 | 9.617975 | GGTACGGATTATACTACTCAACATAAC | 57.382 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
2490 | 6913 | 9.540538 | ACATCCTGCACTAATAGTTATAGAGAT | 57.459 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
2491 | 6914 | 8.941995 | ACATCCTGCACTAATAGTTATAGAGA | 57.058 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
2493 | 6916 | 8.740906 | GCTACATCCTGCACTAATAGTTATAGA | 58.259 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2494 | 6917 | 8.523658 | TGCTACATCCTGCACTAATAGTTATAG | 58.476 | 37.037 | 0.00 | 0.00 | 33.94 | 1.31 |
2495 | 6918 | 8.417273 | TGCTACATCCTGCACTAATAGTTATA | 57.583 | 34.615 | 0.00 | 0.00 | 33.94 | 0.98 |
2557 | 6980 | 5.071653 | TCAATATGCTACAACCCATCTGCTA | 59.928 | 40.000 | 0.00 | 0.00 | 0.00 | 3.49 |
2559 | 6982 | 4.136796 | TCAATATGCTACAACCCATCTGC | 58.863 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
2578 | 7001 | 5.451937 | GCAGTACTATGCAGTGTAGGATCAA | 60.452 | 44.000 | 0.00 | 0.00 | 45.77 | 2.57 |
2651 | 7074 | 1.341531 | CGTGGATGGGTAGCTAGGAAG | 59.658 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
2652 | 7075 | 1.410004 | CGTGGATGGGTAGCTAGGAA | 58.590 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2653 | 7076 | 1.113517 | GCGTGGATGGGTAGCTAGGA | 61.114 | 60.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2654 | 7077 | 1.367840 | GCGTGGATGGGTAGCTAGG | 59.632 | 63.158 | 0.00 | 0.00 | 0.00 | 3.02 |
2655 | 7078 | 1.007271 | CGCGTGGATGGGTAGCTAG | 60.007 | 63.158 | 0.00 | 0.00 | 0.00 | 3.42 |
2656 | 7079 | 1.731433 | GACGCGTGGATGGGTAGCTA | 61.731 | 60.000 | 20.70 | 0.00 | 34.88 | 3.32 |
2657 | 7080 | 3.075005 | ACGCGTGGATGGGTAGCT | 61.075 | 61.111 | 12.93 | 0.00 | 32.71 | 3.32 |
2658 | 7081 | 2.585247 | GACGCGTGGATGGGTAGC | 60.585 | 66.667 | 20.70 | 0.00 | 34.88 | 3.58 |
2659 | 7082 | 2.028125 | ATGGACGCGTGGATGGGTAG | 62.028 | 60.000 | 20.70 | 0.00 | 34.88 | 3.18 |
2660 | 7083 | 2.023414 | GATGGACGCGTGGATGGGTA | 62.023 | 60.000 | 20.70 | 0.00 | 34.88 | 3.69 |
2661 | 7084 | 3.385749 | GATGGACGCGTGGATGGGT | 62.386 | 63.158 | 20.70 | 0.00 | 37.78 | 4.51 |
2662 | 7085 | 2.588877 | GATGGACGCGTGGATGGG | 60.589 | 66.667 | 20.70 | 0.00 | 0.00 | 4.00 |
2663 | 7086 | 2.588877 | GGATGGACGCGTGGATGG | 60.589 | 66.667 | 20.70 | 0.00 | 0.00 | 3.51 |
2664 | 7087 | 2.588877 | GGGATGGACGCGTGGATG | 60.589 | 66.667 | 20.70 | 0.00 | 0.00 | 3.51 |
2665 | 7088 | 2.764128 | AGGGATGGACGCGTGGAT | 60.764 | 61.111 | 20.70 | 8.12 | 36.53 | 3.41 |
2666 | 7089 | 3.458163 | GAGGGATGGACGCGTGGA | 61.458 | 66.667 | 20.70 | 1.85 | 36.53 | 4.02 |
2667 | 7090 | 4.530857 | GGAGGGATGGACGCGTGG | 62.531 | 72.222 | 20.70 | 0.00 | 36.53 | 4.94 |
2668 | 7091 | 2.978452 | GATGGAGGGATGGACGCGTG | 62.978 | 65.000 | 20.70 | 0.00 | 36.53 | 5.34 |
2669 | 7092 | 2.764128 | ATGGAGGGATGGACGCGT | 60.764 | 61.111 | 13.85 | 13.85 | 36.53 | 6.01 |
2670 | 7093 | 2.029666 | GATGGAGGGATGGACGCG | 59.970 | 66.667 | 3.53 | 3.53 | 36.53 | 6.01 |
2671 | 7094 | 2.029666 | CGATGGAGGGATGGACGC | 59.970 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
2672 | 7095 | 2.029666 | GCGATGGAGGGATGGACG | 59.970 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
2673 | 7096 | 1.070445 | CAGCGATGGAGGGATGGAC | 59.930 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
2674 | 7097 | 2.811514 | GCAGCGATGGAGGGATGGA | 61.812 | 63.158 | 1.46 | 0.00 | 0.00 | 3.41 |
2675 | 7098 | 2.281345 | GCAGCGATGGAGGGATGG | 60.281 | 66.667 | 1.46 | 0.00 | 0.00 | 3.51 |
2676 | 7099 | 2.664185 | CGCAGCGATGGAGGGATG | 60.664 | 66.667 | 9.98 | 0.00 | 0.00 | 3.51 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.