Multiple sequence alignment - TraesCS7B01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G072700 chr7B 100.000 5842 0 0 1 5842 80663738 80657897 0.000000e+00 10789.0
1 TraesCS7B01G072700 chr7D 92.459 3156 137 42 32 3149 119570060 119566968 0.000000e+00 4416.0
2 TraesCS7B01G072700 chr7D 94.371 1812 55 30 3152 4933 119566989 119565195 0.000000e+00 2737.0
3 TraesCS7B01G072700 chr7D 85.655 481 15 21 5370 5825 119563715 119563264 1.920000e-124 457.0
4 TraesCS7B01G072700 chr7D 84.433 379 14 21 4921 5274 119564280 119563922 1.210000e-86 331.0
5 TraesCS7B01G072700 chr7D 91.071 56 5 0 4083 4138 249429163 249429218 6.280000e-10 76.8
6 TraesCS7B01G072700 chr7A 91.029 2798 123 44 420 3151 124071475 124068740 0.000000e+00 3659.0
7 TraesCS7B01G072700 chr7A 93.225 1476 56 13 3158 4612 124068758 124067306 0.000000e+00 2132.0
8 TraesCS7B01G072700 chr7A 87.150 1284 52 45 4604 5839 124067181 124065963 0.000000e+00 1352.0
9 TraesCS7B01G072700 chr7A 93.519 324 19 1 92 415 124072132 124071811 1.140000e-131 481.0
10 TraesCS7B01G072700 chr7A 89.189 111 5 3 1 106 124072369 124072261 1.320000e-26 132.0
11 TraesCS7B01G072700 chr6B 85.909 220 31 0 2584 2803 623082732 623082513 9.790000e-58 235.0
12 TraesCS7B01G072700 chr6B 80.000 140 28 0 2906 3045 623082411 623082272 2.880000e-18 104.0
13 TraesCS7B01G072700 chr6D 84.932 219 33 0 2585 2803 413271006 413270788 7.620000e-54 222.0
14 TraesCS7B01G072700 chr6D 82.857 140 24 0 2906 3045 413270693 413270554 6.150000e-25 126.0
15 TraesCS7B01G072700 chr6A 84.932 219 33 0 2585 2803 558787239 558787021 7.620000e-54 222.0
16 TraesCS7B01G072700 chr6A 81.429 140 26 0 2906 3045 558786919 558786780 1.330000e-21 115.0
17 TraesCS7B01G072700 chr1B 83.065 124 19 2 1353 1475 377969155 377969033 1.720000e-20 111.0
18 TraesCS7B01G072700 chr1A 83.065 124 19 2 1353 1475 350400269 350400147 1.720000e-20 111.0
19 TraesCS7B01G072700 chr1D 82.258 124 20 2 1353 1475 278109820 278109698 8.010000e-19 106.0
20 TraesCS7B01G072700 chr1D 91.071 56 5 0 4083 4138 453205151 453205206 6.280000e-10 76.8
21 TraesCS7B01G072700 chr2D 91.071 56 5 0 4083 4138 523630157 523630212 6.280000e-10 76.8
22 TraesCS7B01G072700 chr2A 77.692 130 26 3 1353 1481 654907886 654908013 6.280000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G072700 chr7B 80657897 80663738 5841 True 10789.00 10789 100.0000 1 5842 1 chr7B.!!$R1 5841
1 TraesCS7B01G072700 chr7D 119563264 119570060 6796 True 1985.25 4416 89.2295 32 5825 4 chr7D.!!$R1 5793
2 TraesCS7B01G072700 chr7A 124065963 124072369 6406 True 1551.20 3659 90.8224 1 5839 5 chr7A.!!$R1 5838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 1499 0.244450 CGTATAAATAGGCGCGGGGA 59.756 55.0 8.83 0.0 0.00 4.81 F
1258 1778 0.034186 TCATGCACCCCACTCCATTC 60.034 55.0 0.00 0.0 0.00 2.67 F
1657 2206 0.173708 AGGAGAACGACAAGATCCGC 59.826 55.0 0.00 0.0 35.13 5.54 F
2859 3418 0.179073 CCTCTCGCCCTTGTGGTATG 60.179 60.0 0.00 0.0 36.04 2.39 F
3215 3776 0.107897 TGTTGTTGACAGTGACGGCT 60.108 50.0 0.00 0.0 33.40 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2807 3366 0.042448 GTGTCGTTGGTTCGTTGCTC 60.042 55.0 0.00 0.00 0.00 4.26 R
2891 3450 0.106335 CACCTGCCATGCCAACAAAA 59.894 50.0 0.00 0.00 0.00 2.44 R
2892 3451 0.758310 TCACCTGCCATGCCAACAAA 60.758 50.0 0.00 0.00 0.00 2.83 R
4385 4977 0.037303 GGATGCATGGACGGATGGAT 59.963 55.0 2.46 0.00 37.12 3.41 R
4934 6606 0.248949 GTAAGAGTCCGATCGTGCCC 60.249 60.0 15.09 0.58 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 43 4.519437 TCGCGGCTGAGGCATGAG 62.519 66.667 6.13 0.00 40.87 2.90
58 64 4.362677 AGAGTTCATAGGTAGGCAAAGGA 58.637 43.478 0.00 0.00 0.00 3.36
100 106 8.567285 ACATAGTCCATTTCTTAAAAGACCAG 57.433 34.615 0.00 0.00 34.13 4.00
152 304 9.772973 AACCAATTTAAAAGGATTGTAACTTCC 57.227 29.630 14.85 0.00 32.65 3.46
158 310 6.702716 AAAAGGATTGTAACTTCCGAAACA 57.297 33.333 0.00 0.00 37.10 2.83
181 333 6.037830 ACATGGTTCCAACAATAATACGTAGC 59.962 38.462 0.08 0.00 0.00 3.58
221 373 3.058501 GCAAGTATTAACCCGCGCAATAT 60.059 43.478 8.75 0.00 0.00 1.28
222 374 4.555906 GCAAGTATTAACCCGCGCAATATT 60.556 41.667 8.75 0.00 0.00 1.28
257 409 4.082408 GGCCAAGTGTCCAAAGTTAATACC 60.082 45.833 0.00 0.00 0.00 2.73
269 421 6.183360 CCAAAGTTAATACCAGCCATACCAAG 60.183 42.308 0.00 0.00 0.00 3.61
275 427 1.098050 CCAGCCATACCAAGAAGCAC 58.902 55.000 0.00 0.00 0.00 4.40
283 435 1.238439 ACCAAGAAGCACGGTCATTG 58.762 50.000 0.00 0.00 0.00 2.82
295 447 3.938334 CACGGTCATTGGATCAACATGTA 59.062 43.478 0.00 0.00 0.00 2.29
415 567 3.812053 GTGTCATGTATCATCCAGGCTTC 59.188 47.826 0.00 0.00 0.00 3.86
416 568 3.713248 TGTCATGTATCATCCAGGCTTCT 59.287 43.478 0.00 0.00 0.00 2.85
468 954 0.872388 GCAAAGGGTGTAGTGTTCGG 59.128 55.000 0.00 0.00 0.00 4.30
694 1195 4.863925 GTGGAGCGGAGAGAGCGC 62.864 72.222 0.00 0.00 40.04 5.92
724 1232 1.331399 GGGACGAAGGGAGGGAAGAG 61.331 65.000 0.00 0.00 0.00 2.85
728 1236 1.289530 ACGAAGGGAGGGAAGAGAGAT 59.710 52.381 0.00 0.00 0.00 2.75
730 1238 3.153919 CGAAGGGAGGGAAGAGAGATAG 58.846 54.545 0.00 0.00 0.00 2.08
815 1332 1.265905 GTCAAATCGGCCGTTTCAACT 59.734 47.619 27.15 4.93 0.00 3.16
816 1333 1.265635 TCAAATCGGCCGTTTCAACTG 59.734 47.619 27.15 17.35 0.00 3.16
935 1452 3.531207 TGCTCATCCTCGAGGCCG 61.531 66.667 27.39 19.05 33.36 6.13
982 1499 0.244450 CGTATAAATAGGCGCGGGGA 59.756 55.000 8.83 0.00 0.00 4.81
1064 1581 1.306141 TGCTCATCCTCCGGTCCTT 60.306 57.895 0.00 0.00 0.00 3.36
1076 1593 0.976073 CGGTCCTTTCCTCCTAGCCA 60.976 60.000 0.00 0.00 0.00 4.75
1138 1655 1.153349 GGGATCCGAGAGCAACCAC 60.153 63.158 5.45 0.00 0.00 4.16
1245 1765 5.918576 CGTACGTAATCCTCTTAATCATGCA 59.081 40.000 7.22 0.00 0.00 3.96
1250 1770 2.204463 TCCTCTTAATCATGCACCCCA 58.796 47.619 0.00 0.00 0.00 4.96
1251 1771 2.092429 TCCTCTTAATCATGCACCCCAC 60.092 50.000 0.00 0.00 0.00 4.61
1252 1772 2.092212 CCTCTTAATCATGCACCCCACT 60.092 50.000 0.00 0.00 0.00 4.00
1253 1773 3.209410 CTCTTAATCATGCACCCCACTC 58.791 50.000 0.00 0.00 0.00 3.51
1254 1774 2.092429 TCTTAATCATGCACCCCACTCC 60.092 50.000 0.00 0.00 0.00 3.85
1255 1775 1.294041 TAATCATGCACCCCACTCCA 58.706 50.000 0.00 0.00 0.00 3.86
1256 1776 0.632835 AATCATGCACCCCACTCCAT 59.367 50.000 0.00 0.00 0.00 3.41
1257 1777 0.632835 ATCATGCACCCCACTCCATT 59.367 50.000 0.00 0.00 0.00 3.16
1258 1778 0.034186 TCATGCACCCCACTCCATTC 60.034 55.000 0.00 0.00 0.00 2.67
1259 1779 1.039233 CATGCACCCCACTCCATTCC 61.039 60.000 0.00 0.00 0.00 3.01
1260 1780 1.217057 ATGCACCCCACTCCATTCCT 61.217 55.000 0.00 0.00 0.00 3.36
1261 1781 1.384191 GCACCCCACTCCATTCCTT 59.616 57.895 0.00 0.00 0.00 3.36
1262 1782 0.681243 GCACCCCACTCCATTCCTTC 60.681 60.000 0.00 0.00 0.00 3.46
1308 1828 1.940613 GATCTTAATTCTTGCCGCCGT 59.059 47.619 0.00 0.00 0.00 5.68
1615 2164 4.374702 CAGGCACAGCACGAACGC 62.375 66.667 0.00 0.00 0.00 4.84
1636 2185 1.153958 GGACAATTGCTTCCTGCGC 60.154 57.895 5.05 0.00 46.63 6.09
1657 2206 0.173708 AGGAGAACGACAAGATCCGC 59.826 55.000 0.00 0.00 35.13 5.54
1663 2212 1.805539 CGACAAGATCCGCTGCGAA 60.806 57.895 25.45 2.15 0.00 4.70
1669 2218 2.309528 AGATCCGCTGCGAAAACATA 57.690 45.000 25.45 0.00 0.00 2.29
1678 2227 1.202348 GCGAAAACATAGCCATGCGC 61.202 55.000 0.00 0.00 35.39 6.09
1696 2245 2.460330 CGAGGCGCTGAAGAATGTT 58.540 52.632 7.64 0.00 0.00 2.71
1735 2284 4.609018 CCGCCCATCGCCGAAGAT 62.609 66.667 0.00 0.00 36.73 2.40
1777 2326 2.169789 CATGGAGAACGCTCGCCTG 61.170 63.158 10.04 2.54 41.85 4.85
1946 2495 4.643387 GGCACCACCAGCCGTTCT 62.643 66.667 0.00 0.00 43.15 3.01
1947 2496 3.357079 GCACCACCAGCCGTTCTG 61.357 66.667 0.00 0.00 42.49 3.02
2128 2680 2.252260 CAGCAGGGCGAAAACGTG 59.748 61.111 0.00 0.00 0.00 4.49
2274 2826 0.952984 TCGGCAATCGTGTGCATGAA 60.953 50.000 13.60 0.00 46.81 2.57
2282 2834 1.302511 GTGTGCATGAACCCCGTCT 60.303 57.895 0.00 0.00 0.00 4.18
2283 2835 1.302431 TGTGCATGAACCCCGTCTG 60.302 57.895 0.00 0.00 0.00 3.51
2390 2943 5.978814 ACTAGTTCTGAACTGACTGTTTGT 58.021 37.500 28.46 13.07 42.84 2.83
2488 3041 1.915078 AATGGCCTGAACGGGAGGAG 61.915 60.000 3.32 0.00 31.48 3.69
2495 3048 2.282958 AACGGGAGGAGCGAGTCA 60.283 61.111 0.00 0.00 0.00 3.41
2519 3072 1.326548 GTCATGGTAATGCCGTCGAAC 59.673 52.381 0.00 0.00 41.21 3.95
2532 3085 1.145803 GTCGAACCCGTTCCTTTCTG 58.854 55.000 2.08 0.00 36.27 3.02
2533 3086 0.601841 TCGAACCCGTTCCTTTCTGC 60.602 55.000 2.08 0.00 36.27 4.26
2536 3089 0.765510 AACCCGTTCCTTTCTGCTCT 59.234 50.000 0.00 0.00 0.00 4.09
2544 3097 5.415221 CGTTCCTTTCTGCTCTTAGAATCT 58.585 41.667 0.00 0.00 36.63 2.40
2545 3098 5.872070 CGTTCCTTTCTGCTCTTAGAATCTT 59.128 40.000 0.00 0.00 36.63 2.40
2546 3099 7.036220 CGTTCCTTTCTGCTCTTAGAATCTTA 58.964 38.462 0.00 0.00 36.63 2.10
2574 3133 1.912110 GTCGCGATCTGATATAACGGC 59.088 52.381 14.06 0.00 0.00 5.68
2605 3164 0.459237 AGATGTACGAGCAGCTGCAC 60.459 55.000 38.24 31.25 45.16 4.57
2610 3169 0.667487 TACGAGCAGCTGCACTTCAC 60.667 55.000 38.24 20.11 45.16 3.18
2730 3289 4.189188 CGAGGTCCACTACGGCGG 62.189 72.222 13.24 0.00 33.14 6.13
2731 3290 4.509737 GAGGTCCACTACGGCGGC 62.510 72.222 13.24 0.00 33.14 6.53
2774 3333 3.842923 CGTCCGGCTGCCTCATCT 61.843 66.667 17.92 0.00 0.00 2.90
2779 3338 2.903357 GGCTGCCTCATCTCCGAA 59.097 61.111 12.43 0.00 0.00 4.30
2807 3366 0.904865 TGGCTACTCCAGGGTCAGTG 60.905 60.000 0.00 0.00 40.72 3.66
2825 3384 0.460459 TGAGCAACGAACCAACGACA 60.460 50.000 0.00 0.00 37.03 4.35
2846 3405 4.271816 CGGTCCATCGGCCTCTCG 62.272 72.222 0.00 0.00 0.00 4.04
2856 3415 4.021925 GCCTCTCGCCCTTGTGGT 62.022 66.667 0.00 0.00 36.04 4.16
2858 3417 1.972660 GCCTCTCGCCCTTGTGGTAT 61.973 60.000 0.00 0.00 36.04 2.73
2859 3418 0.179073 CCTCTCGCCCTTGTGGTATG 60.179 60.000 0.00 0.00 36.04 2.39
2860 3419 0.811616 CTCTCGCCCTTGTGGTATGC 60.812 60.000 0.00 0.00 36.04 3.14
2868 3427 0.806868 CTTGTGGTATGCTGCTGTGG 59.193 55.000 0.00 0.00 0.00 4.17
2869 3428 1.243342 TTGTGGTATGCTGCTGTGGC 61.243 55.000 0.00 0.00 39.26 5.01
2874 3433 1.094073 GTATGCTGCTGTGGCTCTGG 61.094 60.000 0.00 0.00 39.59 3.86
2880 3439 1.376553 GCTGTGGCTCTGGGAGTTC 60.377 63.158 0.00 0.00 35.22 3.01
2889 3448 2.611722 GCTCTGGGAGTTCTTCTGACAC 60.612 54.545 0.00 0.00 31.39 3.67
2891 3450 1.341531 CTGGGAGTTCTTCTGACACGT 59.658 52.381 0.00 0.00 0.00 4.49
2892 3451 1.760613 TGGGAGTTCTTCTGACACGTT 59.239 47.619 0.00 0.00 0.00 3.99
2893 3452 2.169769 TGGGAGTTCTTCTGACACGTTT 59.830 45.455 0.00 0.00 0.00 3.60
2894 3453 3.203716 GGGAGTTCTTCTGACACGTTTT 58.796 45.455 0.00 0.00 0.00 2.43
2895 3454 3.002348 GGGAGTTCTTCTGACACGTTTTG 59.998 47.826 0.00 0.00 0.00 2.44
2897 3456 4.094442 GGAGTTCTTCTGACACGTTTTGTT 59.906 41.667 0.00 0.00 39.17 2.83
2898 3457 4.969816 AGTTCTTCTGACACGTTTTGTTG 58.030 39.130 0.00 0.00 39.17 3.33
2899 3458 4.095610 GTTCTTCTGACACGTTTTGTTGG 58.904 43.478 0.00 0.00 39.17 3.77
2900 3459 2.096819 TCTTCTGACACGTTTTGTTGGC 59.903 45.455 0.00 0.00 39.17 4.52
2901 3460 1.454201 TCTGACACGTTTTGTTGGCA 58.546 45.000 0.00 0.00 39.17 4.92
3157 3718 9.626045 TTTCTGTTTTGTTTTGTTTTGTTTTGT 57.374 22.222 0.00 0.00 0.00 2.83
3158 3719 9.626045 TTCTGTTTTGTTTTGTTTTGTTTTGTT 57.374 22.222 0.00 0.00 0.00 2.83
3215 3776 0.107897 TGTTGTTGACAGTGACGGCT 60.108 50.000 0.00 0.00 33.40 5.52
3363 3924 1.380302 GTGTCCATGAACCAGGGCT 59.620 57.895 0.00 0.00 35.05 5.19
3492 4057 1.350019 CCCAGGTTCCGTTTAACTCCT 59.650 52.381 0.00 0.00 0.00 3.69
3507 4072 1.342082 CTCCTTACGTTCACGCACCG 61.342 60.000 0.00 0.00 44.43 4.94
3526 4098 1.454276 CGCAGTACACTGTTACGGTTG 59.546 52.381 10.87 0.00 45.45 3.77
3528 4100 2.473984 GCAGTACACTGTTACGGTTGTC 59.526 50.000 10.87 0.00 45.45 3.18
3538 4110 3.832981 CGGTTGTCGTCACGTACC 58.167 61.111 0.00 2.95 0.00 3.34
3545 4117 2.346803 TGTCGTCACGTACCTAGTACC 58.653 52.381 0.00 0.00 35.81 3.34
3546 4118 1.324736 GTCGTCACGTACCTAGTACCG 59.675 57.143 0.00 0.00 35.81 4.02
3547 4119 1.067142 TCGTCACGTACCTAGTACCGT 60.067 52.381 0.00 0.00 35.81 4.83
3548 4120 2.164827 TCGTCACGTACCTAGTACCGTA 59.835 50.000 0.00 0.00 35.81 4.02
3549 4121 2.281762 CGTCACGTACCTAGTACCGTAC 59.718 54.545 0.00 0.00 35.81 3.67
3683 4255 2.593468 ATCCCGGGAACTGCATCACG 62.593 60.000 30.84 4.96 45.66 4.35
3793 4370 1.496060 TAATGGCGTCTGATCCTGGT 58.504 50.000 0.00 0.00 0.00 4.00
3816 4394 1.250154 TTTTGAATCGCAGGCCCTGG 61.250 55.000 13.78 2.71 31.21 4.45
4173 4754 1.001974 CCACCGTCCAGAACATCAAGA 59.998 52.381 0.00 0.00 0.00 3.02
4245 4826 3.610242 CGAGCTAAGCTAGAGTGTTTGTG 59.390 47.826 0.00 0.00 39.88 3.33
4381 4973 2.171840 CTCTCTTTCTCCTTCCGTCCA 58.828 52.381 0.00 0.00 0.00 4.02
4382 4974 1.893801 TCTCTTTCTCCTTCCGTCCAC 59.106 52.381 0.00 0.00 0.00 4.02
4385 4977 0.765135 TTTCTCCTTCCGTCCACCCA 60.765 55.000 0.00 0.00 0.00 4.51
4393 4994 2.108976 CGTCCACCCATCCATCCG 59.891 66.667 0.00 0.00 0.00 4.18
4544 5146 0.032130 GCGTCAGTCAGGTCAGTCAA 59.968 55.000 0.00 0.00 0.00 3.18
4545 5147 1.772182 CGTCAGTCAGGTCAGTCAAC 58.228 55.000 0.00 0.00 0.00 3.18
4546 5148 1.603172 CGTCAGTCAGGTCAGTCAACC 60.603 57.143 0.00 0.00 39.80 3.77
4547 5149 1.412710 GTCAGTCAGGTCAGTCAACCA 59.587 52.381 0.00 0.00 42.12 3.67
4671 5407 0.537653 GTCCCTTTCTTCCTCCTCGG 59.462 60.000 0.00 0.00 0.00 4.63
4718 5457 5.476599 TGTTCCATTTTTCCTCCTATGTGTG 59.523 40.000 0.00 0.00 0.00 3.82
4720 5459 4.044065 TCCATTTTTCCTCCTATGTGTGGT 59.956 41.667 0.00 0.00 0.00 4.16
4721 5460 4.158394 CCATTTTTCCTCCTATGTGTGGTG 59.842 45.833 0.00 0.00 0.00 4.17
4722 5461 4.447138 TTTTTCCTCCTATGTGTGGTGT 57.553 40.909 0.00 0.00 0.00 4.16
4723 5462 4.447138 TTTTCCTCCTATGTGTGGTGTT 57.553 40.909 0.00 0.00 0.00 3.32
4724 5463 3.417069 TTCCTCCTATGTGTGGTGTTG 57.583 47.619 0.00 0.00 0.00 3.33
4725 5464 1.003118 TCCTCCTATGTGTGGTGTTGC 59.997 52.381 0.00 0.00 0.00 4.17
4726 5465 1.078709 CTCCTATGTGTGGTGTTGCG 58.921 55.000 0.00 0.00 0.00 4.85
4727 5466 0.394938 TCCTATGTGTGGTGTTGCGT 59.605 50.000 0.00 0.00 0.00 5.24
4728 5467 0.516877 CCTATGTGTGGTGTTGCGTG 59.483 55.000 0.00 0.00 0.00 5.34
4735 5474 2.277884 GGTGTTGCGTGTGTGTGC 60.278 61.111 0.00 0.00 0.00 4.57
4941 6613 2.668212 CTTGCTTTCCGGGCACGA 60.668 61.111 11.66 0.00 44.60 4.35
4942 6614 2.033448 TTGCTTTCCGGGCACGAT 59.967 55.556 11.66 0.00 44.60 3.73
4943 6615 1.982073 CTTGCTTTCCGGGCACGATC 61.982 60.000 11.66 0.00 44.60 3.69
4944 6616 3.564027 GCTTTCCGGGCACGATCG 61.564 66.667 11.66 14.88 44.60 3.69
4945 6617 2.890474 CTTTCCGGGCACGATCGG 60.890 66.667 20.98 9.59 46.89 4.18
5110 6804 1.871676 GAAGAGACCAACCAACCGAAC 59.128 52.381 0.00 0.00 0.00 3.95
5114 6808 1.152839 ACCAACCAACCGAACCAGG 60.153 57.895 0.00 0.00 37.30 4.45
5218 6925 4.856801 GGTCGACCGGCCATGCAT 62.857 66.667 20.85 0.00 40.19 3.96
5367 7210 1.946707 TGATCCAGGGAGGGAGGGA 60.947 63.158 0.00 0.00 41.08 4.20
5368 7211 1.152139 GATCCAGGGAGGGAGGGAG 60.152 68.421 0.00 0.00 41.08 4.30
5378 7221 3.036959 GGAGGGAGGGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
5383 7226 1.635051 GGAGGGAGGGAGGAAGGAT 59.365 63.158 0.00 0.00 0.00 3.24
5451 7294 3.326578 TGGTCACCATCCCCACCG 61.327 66.667 0.00 0.00 0.00 4.94
5538 7381 1.299976 CTGTTCCCTTCCCTTCCCG 59.700 63.158 0.00 0.00 0.00 5.14
5539 7382 2.045242 GTTCCCTTCCCTTCCCGC 60.045 66.667 0.00 0.00 0.00 6.13
5540 7383 3.712907 TTCCCTTCCCTTCCCGCG 61.713 66.667 0.00 0.00 0.00 6.46
5643 7490 4.841861 CGCCGCCGGGACCAAATA 62.842 66.667 4.77 0.00 34.06 1.40
5644 7491 2.438795 GCCGCCGGGACCAAATAA 60.439 61.111 4.77 0.00 34.06 1.40
5645 7492 2.767445 GCCGCCGGGACCAAATAAC 61.767 63.158 4.77 0.00 34.06 1.89
5646 7493 1.078001 CCGCCGGGACCAAATAACT 60.078 57.895 2.18 0.00 34.06 2.24
5647 7494 1.373590 CCGCCGGGACCAAATAACTG 61.374 60.000 2.18 0.00 34.06 3.16
5684 7531 2.120232 CTCTACATCGCGGCTTAACTG 58.880 52.381 6.13 0.00 0.00 3.16
5714 7561 2.124612 ACTGCACTGCACTGCACA 60.125 55.556 15.89 0.00 42.36 4.57
5715 7562 1.527611 ACTGCACTGCACTGCACAT 60.528 52.632 15.89 5.86 42.36 3.21
5718 7586 1.236616 TGCACTGCACTGCACATACC 61.237 55.000 15.89 0.00 42.36 2.73
5720 7588 0.321919 CACTGCACTGCACATACCCT 60.322 55.000 0.00 0.00 33.79 4.34
5724 7592 0.321564 GCACTGCACATACCCTCACA 60.322 55.000 0.00 0.00 0.00 3.58
5725 7593 1.730501 CACTGCACATACCCTCACAG 58.269 55.000 0.00 0.00 0.00 3.66
5734 7602 3.055094 ACATACCCTCACAGATGGACAAC 60.055 47.826 0.00 0.00 0.00 3.32
5743 7611 5.436175 TCACAGATGGACAACAAGAAAAGA 58.564 37.500 0.00 0.00 0.00 2.52
5763 7631 4.676444 CACATGCGTGCACTATGC 57.324 55.556 23.01 16.67 45.29 3.14
5827 7701 2.362889 CCATGGTGGCCAAGTCCC 60.363 66.667 7.24 4.73 36.95 4.46
5828 7702 2.440147 CATGGTGGCCAAGTCCCA 59.560 61.111 14.71 14.71 36.95 4.37
5829 7703 1.228831 CATGGTGGCCAAGTCCCAA 60.229 57.895 16.15 1.46 36.95 4.12
5830 7704 1.077265 ATGGTGGCCAAGTCCCAAG 59.923 57.895 16.15 0.00 36.95 3.61
5832 7706 1.903404 GGTGGCCAAGTCCCAAGTG 60.903 63.158 7.24 0.00 33.39 3.16
5835 7709 1.378762 GGCCAAGTCCCAAGTGCTA 59.621 57.895 0.00 0.00 0.00 3.49
5836 7710 0.960861 GGCCAAGTCCCAAGTGCTAC 60.961 60.000 0.00 0.00 0.00 3.58
5837 7711 0.036875 GCCAAGTCCCAAGTGCTACT 59.963 55.000 0.00 0.00 0.00 2.57
5838 7712 1.946283 GCCAAGTCCCAAGTGCTACTC 60.946 57.143 0.00 0.00 0.00 2.59
5839 7713 1.339151 CCAAGTCCCAAGTGCTACTCC 60.339 57.143 0.00 0.00 0.00 3.85
5840 7714 0.984995 AAGTCCCAAGTGCTACTCCC 59.015 55.000 0.00 0.00 0.00 4.30
5841 7715 0.910088 AGTCCCAAGTGCTACTCCCC 60.910 60.000 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.819761 TCATGCCTCAGCCGCGAC 62.820 66.667 8.23 0.00 38.69 5.19
37 43 4.755266 TCCTTTGCCTACCTATGAACTC 57.245 45.455 0.00 0.00 0.00 3.01
64 70 9.533831 AAGAAATGGACTATGTTGGTATCTTTT 57.466 29.630 0.00 0.00 0.00 2.27
148 300 2.621055 TGTTGGAACCATGTTTCGGAAG 59.379 45.455 0.00 0.00 0.00 3.46
152 304 6.467682 CGTATTATTGTTGGAACCATGTTTCG 59.532 38.462 0.00 0.00 0.00 3.46
158 310 6.116806 TGCTACGTATTATTGTTGGAACCAT 58.883 36.000 0.00 0.00 0.00 3.55
181 333 6.422776 ACTTGCTATAAACGATGTTTCCTG 57.577 37.500 0.00 0.00 0.00 3.86
257 409 0.729116 CGTGCTTCTTGGTATGGCTG 59.271 55.000 0.00 0.00 0.00 4.85
269 421 1.737838 TGATCCAATGACCGTGCTTC 58.262 50.000 0.00 0.00 0.00 3.86
275 427 5.756195 AATACATGTTGATCCAATGACCG 57.244 39.130 2.30 0.00 0.00 4.79
283 435 9.424319 CTGGTAGTGTATAATACATGTTGATCC 57.576 37.037 2.30 0.00 41.34 3.36
295 447 5.780282 TGCTCATAGCCTGGTAGTGTATAAT 59.220 40.000 0.00 0.00 41.51 1.28
362 514 6.662616 CATTTGGACCTGATGATCGTTTATC 58.337 40.000 0.00 0.00 34.93 1.75
366 518 2.684881 GCATTTGGACCTGATGATCGTT 59.315 45.455 10.65 0.00 0.00 3.85
369 521 2.360165 GTGGCATTTGGACCTGATGATC 59.640 50.000 10.65 0.00 0.00 2.92
415 567 1.626654 CCGTAGCGCAAACCACTCAG 61.627 60.000 11.47 0.00 0.00 3.35
416 568 1.666553 CCGTAGCGCAAACCACTCA 60.667 57.895 11.47 0.00 0.00 3.41
694 1195 1.609555 CCTTCGTCCCTATCCTTCTCG 59.390 57.143 0.00 0.00 0.00 4.04
695 1196 1.964933 CCCTTCGTCCCTATCCTTCTC 59.035 57.143 0.00 0.00 0.00 2.87
724 1232 0.736053 CGCTCCCGGCTATCTATCTC 59.264 60.000 0.00 0.00 39.13 2.75
815 1332 1.203523 GTATGCCGATTTTTGCACCCA 59.796 47.619 0.00 0.00 40.88 4.51
816 1333 1.797348 CGTATGCCGATTTTTGCACCC 60.797 52.381 0.00 0.00 40.88 4.61
913 1430 4.854784 TCGAGGATGAGCACGCGC 62.855 66.667 5.73 0.00 38.99 6.86
954 1471 1.068055 CCTATTTATACGCGCCGGAGT 60.068 52.381 5.05 3.92 0.00 3.85
1007 1524 0.248843 GAGAGACCTTGGCACTCAGG 59.751 60.000 2.11 2.11 33.69 3.86
1009 1526 1.261480 GAGAGAGACCTTGGCACTCA 58.739 55.000 13.69 0.00 33.69 3.41
1064 1581 2.427245 GCTCGCTGGCTAGGAGGAA 61.427 63.158 14.37 0.00 0.00 3.36
1076 1593 4.484258 GGTTCTCGCTCGCTCGCT 62.484 66.667 0.00 0.00 0.00 4.93
1245 1765 0.178831 AGGAAGGAATGGAGTGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
1250 1770 1.376649 AAGGCAGGAAGGAATGGAGT 58.623 50.000 0.00 0.00 0.00 3.85
1251 1771 3.652057 TTAAGGCAGGAAGGAATGGAG 57.348 47.619 0.00 0.00 0.00 3.86
1252 1772 4.230502 AGAATTAAGGCAGGAAGGAATGGA 59.769 41.667 0.00 0.00 0.00 3.41
1253 1773 4.540715 AGAATTAAGGCAGGAAGGAATGG 58.459 43.478 0.00 0.00 0.00 3.16
1254 1774 4.274459 CGAGAATTAAGGCAGGAAGGAATG 59.726 45.833 0.00 0.00 0.00 2.67
1255 1775 4.455606 CGAGAATTAAGGCAGGAAGGAAT 58.544 43.478 0.00 0.00 0.00 3.01
1256 1776 3.873910 CGAGAATTAAGGCAGGAAGGAA 58.126 45.455 0.00 0.00 0.00 3.36
1257 1777 2.420129 GCGAGAATTAAGGCAGGAAGGA 60.420 50.000 0.00 0.00 0.00 3.36
1258 1778 1.943340 GCGAGAATTAAGGCAGGAAGG 59.057 52.381 0.00 0.00 0.00 3.46
1259 1779 1.943340 GGCGAGAATTAAGGCAGGAAG 59.057 52.381 0.00 0.00 0.00 3.46
1260 1780 1.559682 AGGCGAGAATTAAGGCAGGAA 59.440 47.619 0.00 0.00 0.00 3.36
1261 1781 1.204146 AGGCGAGAATTAAGGCAGGA 58.796 50.000 0.00 0.00 0.00 3.86
1262 1782 1.672881 CAAGGCGAGAATTAAGGCAGG 59.327 52.381 0.00 0.00 0.00 4.85
1308 1828 4.827835 CCATTACTCCTCTCTACCGATCAA 59.172 45.833 0.00 0.00 0.00 2.57
1636 2185 1.469940 CGGATCTTGTCGTTCTCCTGG 60.470 57.143 0.00 0.00 0.00 4.45
1657 2206 1.831343 GCATGGCTATGTTTTCGCAG 58.169 50.000 12.04 0.00 36.65 5.18
1663 2212 1.439353 CCTCGCGCATGGCTATGTTT 61.439 55.000 12.04 0.00 40.44 2.83
1678 2227 1.640428 TAACATTCTTCAGCGCCTCG 58.360 50.000 2.29 0.00 0.00 4.63
1735 2284 1.978542 GCTTCTGCTCGTCGAAGTAA 58.021 50.000 0.00 0.00 39.01 2.24
1759 2308 2.169789 CAGGCGAGCGTTCTCCATG 61.170 63.158 11.05 2.73 35.94 3.66
1852 2401 2.047274 ACGTTCATCTGGGGCGTG 60.047 61.111 0.00 0.00 34.36 5.34
1858 2407 0.526524 GCGAGGAGACGTTCATCTGG 60.527 60.000 0.00 0.00 34.50 3.86
1960 2509 2.752238 AGGTCGAGGTCCAGCGAG 60.752 66.667 7.06 0.00 37.18 5.03
2122 2674 1.544759 GGGATCTTGACCCACACGTTT 60.545 52.381 0.00 0.00 46.05 3.60
2163 2715 1.746239 TACGCCTGGACGTCGATGA 60.746 57.895 12.58 0.41 44.43 2.92
2251 2803 3.071459 GCACACGATTGCCGAGTCG 62.071 63.158 5.29 5.29 39.99 4.18
2282 2834 0.317160 ATGAACACTTCGACGAGGCA 59.683 50.000 6.92 0.00 0.00 4.75
2283 2835 0.716108 CATGAACACTTCGACGAGGC 59.284 55.000 6.92 0.00 0.00 4.70
2509 3062 4.668118 GGAACGGGTTCGACGGCA 62.668 66.667 5.55 0.00 40.37 5.69
2519 3072 2.233922 TCTAAGAGCAGAAAGGAACGGG 59.766 50.000 0.00 0.00 0.00 5.28
2532 3085 8.643752 GCGACTGATTAATAAGATTCTAAGAGC 58.356 37.037 6.84 0.00 0.00 4.09
2533 3086 8.845648 CGCGACTGATTAATAAGATTCTAAGAG 58.154 37.037 0.00 0.00 0.00 2.85
2536 3089 9.343103 GATCGCGACTGATTAATAAGATTCTAA 57.657 33.333 12.93 0.00 0.00 2.10
2566 3119 1.020333 GCACACCCAACGCCGTTATA 61.020 55.000 0.45 0.00 0.00 0.98
2574 3133 0.796312 GTACATCTGCACACCCAACG 59.204 55.000 0.00 0.00 0.00 4.10
2774 3333 2.238646 AGTAGCCATTGGTCATTTCGGA 59.761 45.455 4.26 0.00 0.00 4.55
2799 3358 1.228657 GGTTCGTTGCTCACTGACCC 61.229 60.000 0.00 0.00 0.00 4.46
2807 3366 0.042448 GTGTCGTTGGTTCGTTGCTC 60.042 55.000 0.00 0.00 0.00 4.26
2825 3384 2.764128 AGGCCGATGGACCGATGT 60.764 61.111 0.00 0.00 0.00 3.06
2830 3389 4.593864 GCGAGAGGCCGATGGACC 62.594 72.222 0.00 0.00 34.80 4.46
2846 3405 1.379044 AGCAGCATACCACAAGGGC 60.379 57.895 0.00 0.00 42.05 5.19
2849 3408 0.806868 CCACAGCAGCATACCACAAG 59.193 55.000 0.00 0.00 0.00 3.16
2850 3409 1.243342 GCCACAGCAGCATACCACAA 61.243 55.000 0.00 0.00 39.53 3.33
2854 3413 1.094073 CAGAGCCACAGCAGCATACC 61.094 60.000 0.00 0.00 43.56 2.73
2856 3415 1.222661 CCAGAGCCACAGCAGCATA 59.777 57.895 0.00 0.00 43.56 3.14
2858 3417 4.340246 CCCAGAGCCACAGCAGCA 62.340 66.667 0.00 0.00 43.56 4.41
2859 3418 3.972971 CTCCCAGAGCCACAGCAGC 62.973 68.421 0.00 0.00 43.56 5.25
2860 3419 2.121992 AACTCCCAGAGCCACAGCAG 62.122 60.000 0.00 0.00 43.56 4.24
2868 3427 1.620819 TGTCAGAAGAACTCCCAGAGC 59.379 52.381 0.00 0.00 32.04 4.09
2869 3428 2.352225 CGTGTCAGAAGAACTCCCAGAG 60.352 54.545 0.00 0.00 35.52 3.35
2874 3433 3.621715 ACAAAACGTGTCAGAAGAACTCC 59.378 43.478 0.00 0.00 34.38 3.85
2880 3439 2.159448 TGCCAACAAAACGTGTCAGAAG 60.159 45.455 0.00 0.00 40.60 2.85
2889 3448 0.945265 CCTGCCATGCCAACAAAACG 60.945 55.000 0.00 0.00 0.00 3.60
2891 3450 0.106335 CACCTGCCATGCCAACAAAA 59.894 50.000 0.00 0.00 0.00 2.44
2892 3451 0.758310 TCACCTGCCATGCCAACAAA 60.758 50.000 0.00 0.00 0.00 2.83
2893 3452 1.152589 TCACCTGCCATGCCAACAA 60.153 52.632 0.00 0.00 0.00 2.83
2894 3453 1.902918 GTCACCTGCCATGCCAACA 60.903 57.895 0.00 0.00 0.00 3.33
2895 3454 2.639327 GGTCACCTGCCATGCCAAC 61.639 63.158 0.00 0.00 0.00 3.77
2897 3456 3.259314 AGGTCACCTGCCATGCCA 61.259 61.111 0.00 0.00 29.57 4.92
2898 3457 2.753043 CAGGTCACCTGCCATGCC 60.753 66.667 12.03 0.00 45.13 4.40
3098 3659 1.149782 TGGGGTTTAAGGGCCCATCA 61.150 55.000 27.56 0.00 46.59 3.07
3133 3694 9.626045 AAACAAAACAAAACAAAACAAAACAGA 57.374 22.222 0.00 0.00 0.00 3.41
3158 3719 9.717892 GGTTAGAACAAAACAAAACAAAACAAA 57.282 25.926 0.00 0.00 0.00 2.83
3215 3776 1.078918 CATGCTGCGTCTCCCTTCA 60.079 57.895 0.00 0.00 0.00 3.02
3455 4016 3.764049 GTGCGCGTGTTCTCGTCC 61.764 66.667 8.43 0.00 0.00 4.79
3481 4042 3.420927 GCGTGAACGTAAGGAGTTAAACG 60.421 47.826 4.59 10.45 46.39 3.60
3482 4043 3.490526 TGCGTGAACGTAAGGAGTTAAAC 59.509 43.478 4.59 0.00 46.39 2.01
3492 4057 2.279318 TGCGGTGCGTGAACGTAA 60.279 55.556 4.59 0.00 42.22 3.18
3526 4098 1.324736 CGGTACTAGGTACGTGACGAC 59.675 57.143 13.70 5.47 39.64 4.34
3528 4100 1.359848 ACGGTACTAGGTACGTGACG 58.640 55.000 2.24 2.24 39.64 4.35
3546 4118 2.735857 GCGTGTGTCACCCGGTAC 60.736 66.667 9.90 0.00 0.00 3.34
3547 4119 3.993584 GGCGTGTGTCACCCGGTA 61.994 66.667 9.90 0.00 0.00 4.02
3549 4121 4.697756 ATGGCGTGTGTCACCCGG 62.698 66.667 9.90 0.00 28.39 5.73
3683 4255 0.179084 TAGTCATTACCCGCAGCAGC 60.179 55.000 0.00 0.00 37.42 5.25
3793 4370 1.816224 GGGCCTGCGATTCAAAAGTTA 59.184 47.619 0.84 0.00 0.00 2.24
4209 4790 1.227674 GCTCGGATGGATGGTGGAC 60.228 63.158 0.00 0.00 0.00 4.02
4245 4826 1.133407 CTCCCTCGTCAGAAGCACTAC 59.867 57.143 0.00 0.00 0.00 2.73
4350 4932 2.754552 GAGAAAGAGAGAGAGAGCTGCA 59.245 50.000 1.02 0.00 0.00 4.41
4354 4936 3.381590 GGAAGGAGAAAGAGAGAGAGAGC 59.618 52.174 0.00 0.00 0.00 4.09
4381 4973 1.839191 CATGGACGGATGGATGGGT 59.161 57.895 0.00 0.00 0.00 4.51
4382 4974 1.601759 GCATGGACGGATGGATGGG 60.602 63.158 0.00 0.00 0.00 4.00
4385 4977 0.037303 GGATGCATGGACGGATGGAT 59.963 55.000 2.46 0.00 37.12 3.41
4393 4994 1.078497 TGACGGTGGATGCATGGAC 60.078 57.895 2.46 0.00 0.00 4.02
4530 5132 1.689273 GACTGGTTGACTGACCTGACT 59.311 52.381 7.76 0.00 40.06 3.41
4544 5146 1.959985 CTGACTCACTGACTGACTGGT 59.040 52.381 0.00 0.00 0.00 4.00
4545 5147 1.959985 ACTGACTCACTGACTGACTGG 59.040 52.381 0.00 0.00 0.00 4.00
4546 5148 2.620585 TGACTGACTCACTGACTGACTG 59.379 50.000 0.00 0.00 0.00 3.51
4547 5149 2.884012 CTGACTGACTCACTGACTGACT 59.116 50.000 0.00 0.00 0.00 3.41
4718 5457 2.277884 GCACACACACGCAACACC 60.278 61.111 0.00 0.00 0.00 4.16
4720 5459 3.121676 ACGCACACACACGCAACA 61.122 55.556 0.00 0.00 0.00 3.33
4721 5460 2.647481 CACGCACACACACGCAAC 60.647 61.111 0.00 0.00 0.00 4.17
4722 5461 3.121676 ACACGCACACACACGCAA 61.122 55.556 0.00 0.00 0.00 4.85
4723 5462 3.858989 CACACGCACACACACGCA 61.859 61.111 0.00 0.00 0.00 5.24
4724 5463 3.860125 ACACACGCACACACACGC 61.860 61.111 0.00 0.00 0.00 5.34
4725 5464 2.021243 CACACACGCACACACACG 59.979 61.111 0.00 0.00 0.00 4.49
4726 5465 2.277247 GCACACACGCACACACAC 60.277 61.111 0.00 0.00 0.00 3.82
4727 5466 3.858989 CGCACACACGCACACACA 61.859 61.111 0.00 0.00 0.00 3.72
4728 5467 4.589700 CCGCACACACGCACACAC 62.590 66.667 0.00 0.00 0.00 3.82
4735 5474 0.515127 TATTTTCTGCCGCACACACG 59.485 50.000 0.00 0.00 0.00 4.49
4750 5489 0.274092 CCCTACCCCCTCCCCTATTT 59.726 60.000 0.00 0.00 0.00 1.40
4847 5586 7.173390 ACTTTAACCAGATCTCTTTCTTTTCCG 59.827 37.037 0.00 0.00 0.00 4.30
4934 6606 0.248949 GTAAGAGTCCGATCGTGCCC 60.249 60.000 15.09 0.58 0.00 5.36
4938 6610 6.018098 CAGTGTAATAGTAAGAGTCCGATCGT 60.018 42.308 15.09 0.00 0.00 3.73
4941 6613 5.009811 GGCAGTGTAATAGTAAGAGTCCGAT 59.990 44.000 0.00 0.00 0.00 4.18
4942 6614 4.337555 GGCAGTGTAATAGTAAGAGTCCGA 59.662 45.833 0.00 0.00 0.00 4.55
4943 6615 4.338682 AGGCAGTGTAATAGTAAGAGTCCG 59.661 45.833 0.00 0.00 0.00 4.79
4944 6616 5.127356 ACAGGCAGTGTAATAGTAAGAGTCC 59.873 44.000 0.00 0.00 37.75 3.85
4945 6617 6.210287 ACAGGCAGTGTAATAGTAAGAGTC 57.790 41.667 0.00 0.00 37.75 3.36
4946 6618 7.899648 ATACAGGCAGTGTAATAGTAAGAGT 57.100 36.000 2.57 0.00 45.00 3.24
5052 6742 2.005537 CAACGACAACAAGCTGCGC 61.006 57.895 0.00 0.00 0.00 6.09
5053 6743 1.369209 CCAACGACAACAAGCTGCG 60.369 57.895 0.00 0.00 0.00 5.18
5054 6744 0.317020 GACCAACGACAACAAGCTGC 60.317 55.000 0.00 0.00 0.00 5.25
5110 6804 1.588674 TACACGAAACAAGCACCTGG 58.411 50.000 0.00 0.00 0.00 4.45
5114 6808 4.432503 CGTCTACATACACGAAACAAGCAC 60.433 45.833 0.00 0.00 38.32 4.40
5115 6809 3.671459 CGTCTACATACACGAAACAAGCA 59.329 43.478 0.00 0.00 38.32 3.91
5153 6853 1.301087 TTGTTGGGCGTGTACTCGG 60.301 57.895 18.02 1.60 0.00 4.63
5158 6858 1.594836 GTCGGTTGTTGGGCGTGTA 60.595 57.895 0.00 0.00 0.00 2.90
5203 6910 2.823593 CAATGCATGGCCGGTCGA 60.824 61.111 0.00 0.00 0.00 4.20
5205 6912 3.451004 TGCAATGCATGGCCGGTC 61.451 61.111 23.36 0.00 31.71 4.79
5334 7177 2.164422 TGGATCAGAGCTCACTAACACG 59.836 50.000 17.77 0.00 0.00 4.49
5339 7182 1.570979 TCCCTGGATCAGAGCTCACTA 59.429 52.381 17.77 0.24 32.44 2.74
5367 7210 1.319799 CCATCCTTCCTCCCTCCCT 59.680 63.158 0.00 0.00 0.00 4.20
5368 7211 1.772156 CCCATCCTTCCTCCCTCCC 60.772 68.421 0.00 0.00 0.00 4.30
5451 7294 0.521291 TCAATGGCGCAGTTAAGTGC 59.479 50.000 22.90 22.90 44.00 4.40
5640 7487 5.952347 AGGTCGGGACTTATTCAGTTATT 57.048 39.130 0.00 0.00 35.01 1.40
5641 7488 6.134754 AGTAGGTCGGGACTTATTCAGTTAT 58.865 40.000 0.00 0.00 35.01 1.89
5642 7489 5.513233 AGTAGGTCGGGACTTATTCAGTTA 58.487 41.667 0.00 0.00 35.01 2.24
5643 7490 4.351127 AGTAGGTCGGGACTTATTCAGTT 58.649 43.478 0.00 0.00 35.01 3.16
5644 7491 3.952967 GAGTAGGTCGGGACTTATTCAGT 59.047 47.826 8.08 0.00 39.07 3.41
5645 7492 4.208746 AGAGTAGGTCGGGACTTATTCAG 58.791 47.826 13.31 0.00 33.89 3.02
5646 7493 4.246712 AGAGTAGGTCGGGACTTATTCA 57.753 45.455 13.31 0.00 33.89 2.57
5647 7494 5.128919 TGTAGAGTAGGTCGGGACTTATTC 58.871 45.833 5.65 5.65 32.39 1.75
5684 7531 3.431725 GCAGTGGTGGCGCTTACC 61.432 66.667 22.11 22.11 38.71 2.85
5714 7561 3.181329 TGTTGTCCATCTGTGAGGGTAT 58.819 45.455 0.00 0.00 34.82 2.73
5715 7562 2.615391 TGTTGTCCATCTGTGAGGGTA 58.385 47.619 0.00 0.00 34.82 3.69
5718 7586 3.407424 TCTTGTTGTCCATCTGTGAGG 57.593 47.619 0.00 0.00 0.00 3.86
5720 7588 5.436175 TCTTTTCTTGTTGTCCATCTGTGA 58.564 37.500 0.00 0.00 0.00 3.58
5724 7592 6.152661 TGTGTTTCTTTTCTTGTTGTCCATCT 59.847 34.615 0.00 0.00 0.00 2.90
5725 7593 6.329496 TGTGTTTCTTTTCTTGTTGTCCATC 58.671 36.000 0.00 0.00 0.00 3.51
5734 7602 4.680934 CACGCATGTGTTTCTTTTCTTG 57.319 40.909 9.73 0.00 41.34 3.02
5772 7640 3.934068 AGTGATCGATGCATGCATATCA 58.066 40.909 29.71 29.71 36.70 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.