AutoCloner

Multiple sequence alignment - TraesCS7B01G072200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G072200	chr7B	100.000	3626	0	0	1	3626	79376610	79380235	0.000000e+00	6697.0
1	TraesCS7B01G072200	chr7B	94.099	949	51	3	1	949	99996215	99995272	0.000000e+00	1437.0
2	TraesCS7B01G072200	chr7B	94.451	865	44	2	86	949	603672040	603672901	0.000000e+00	1328.0
3	TraesCS7B01G072200	chr7D	89.996	2319	152	23	964	3245	118374202	118376477	0.000000e+00	2924.0
4	TraesCS7B01G072200	chr7D	89.858	1617	127	17	1047	2649	118595207	118596800	0.000000e+00	2043.0
5	TraesCS7B01G072200	chr7D	84.759	643	40	22	2646	3245	118599751	118600378	3.120000e-165	592.0
6	TraesCS7B01G072200	chr7D	90.028	361	29	6	3239	3596	118601399	118601755	9.170000e-126	460.0
7	TraesCS7B01G072200	chr7D	83.469	369	30	13	3238	3592	118376635	118376986	7.560000e-82	315.0
8	TraesCS7B01G072200	chr7D	96.875	32	1	0	3595	3626	118601801	118601832	2.000000e-03	54.7
9	TraesCS7B01G072200	chr7A	89.134	1408	111	22	1248	2644	122740605	122741981	0.000000e+00	1714.0
10	TraesCS7B01G072200	chr7A	83.986	868	80	25	2773	3596	122742478	122743330	0.000000e+00	778.0
11	TraesCS7B01G072200	chr3D	95.579	950	37	3	1	950	49497745	49496801	0.000000e+00	1517.0
12	TraesCS7B01G072200	chr1A	95.469	949	39	2	1	949	576294920	576293976	0.000000e+00	1511.0
13	TraesCS7B01G072200	chr3B	94.534	933	44	5	21	950	10920803	10919875	0.000000e+00	1434.0
14	TraesCS7B01G072200	chr3B	83.168	202	17	9	3146	3338	657600533	657600340	6.230000e-38	169.0
15	TraesCS7B01G072200	chr4B	93.586	951	54	6	1	949	647706261	647705316	0.000000e+00	1411.0
16	TraesCS7B01G072200	chr4B	79.641	1169	209	17	1290	2454	429352602	429353745	0.000000e+00	813.0
17	TraesCS7B01G072200	chr4A	94.143	922	49	5	29	949	624435726	624436643	0.000000e+00	1399.0
18	TraesCS7B01G072200	chr6A	94.756	820	36	6	1	818	36705443	36704629	0.000000e+00	1269.0
19	TraesCS7B01G072200	chr6A	91.041	759	59	7	191	946	11873929	11873177	0.000000e+00	1016.0
20	TraesCS7B01G072200	chr5A	92.432	370	24	3	1	368	363864238	363864605	3.210000e-145	525.0
21	TraesCS7B01G072200	chr5A	76.490	889	158	39	1323	2185	18692842	18691979	1.550000e-118	436.0
22	TraesCS7B01G072200	chr6B	83.468	248	17	8	3146	3374	687209686	687209444	3.670000e-50	209.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G072200	chr7B	79376610	79380235	3625	False	6697.000	6697	100.0000	1	3626	1	chr7B.!!$F1	3625
1	TraesCS7B01G072200	chr7B	99995272	99996215	943	True	1437.000	1437	94.0990	1	949	1	chr7B.!!$R1	948
2	TraesCS7B01G072200	chr7B	603672040	603672901	861	False	1328.000	1328	94.4510	86	949	1	chr7B.!!$F2	863
3	TraesCS7B01G072200	chr7D	118374202	118376986	2784	False	1619.500	2924	86.7325	964	3592	2	chr7D.!!$F1	2628
4	TraesCS7B01G072200	chr7D	118595207	118601832	6625	False	787.425	2043	90.3800	1047	3626	4	chr7D.!!$F2	2579
5	TraesCS7B01G072200	chr7A	122740605	122743330	2725	False	1246.000	1714	86.5600	1248	3596	2	chr7A.!!$F1	2348
6	TraesCS7B01G072200	chr3D	49496801	49497745	944	True	1517.000	1517	95.5790	1	950	1	chr3D.!!$R1	949
7	TraesCS7B01G072200	chr1A	576293976	576294920	944	True	1511.000	1511	95.4690	1	949	1	chr1A.!!$R1	948
8	TraesCS7B01G072200	chr3B	10919875	10920803	928	True	1434.000	1434	94.5340	21	950	1	chr3B.!!$R1	929
9	TraesCS7B01G072200	chr4B	647705316	647706261	945	True	1411.000	1411	93.5860	1	949	1	chr4B.!!$R1	948
10	TraesCS7B01G072200	chr4B	429352602	429353745	1143	False	813.000	813	79.6410	1290	2454	1	chr4B.!!$F1	1164
11	TraesCS7B01G072200	chr4A	624435726	624436643	917	False	1399.000	1399	94.1430	29	949	1	chr4A.!!$F1	920
12	TraesCS7B01G072200	chr6A	36704629	36705443	814	True	1269.000	1269	94.7560	1	818	1	chr6A.!!$R2	817
13	TraesCS7B01G072200	chr6A	11873177	11873929	752	True	1016.000	1016	91.0410	191	946	1	chr6A.!!$R1	755
14	TraesCS7B01G072200	chr5A	18691979	18692842	863	True	436.000	436	76.4900	1323	2185	1	chr5A.!!$R1	862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
953	964	0.673985	AAAAAGAGGTTTGCGCTCCC	59.326	50.0	9.73	5.64	0.0	4.30	F
1966	2016	0.103208	GGTGGAGACTAGTGCGGATG	59.897	60.0	0.00	0.00	0.0	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2034	2087	0.392863	CGCCATTGTCCACCAGATGA	60.393	55.0	0.00	0.0	0.00	2.92	R
3356	7534	0.184451	GTGATCATGCCCCATGGAGT	59.816	55.0	15.22	0.0	41.66	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
593	603	0.907486	CTGAGGGTCTTGGCATCAGA	59.093	55.000	7.58	0.00	39.80	3.27
602	613	4.219288	GGTCTTGGCATCAGAAGTTCAAAT	59.781	41.667	5.50	0.00	0.00	2.32
603	614	5.415701	GGTCTTGGCATCAGAAGTTCAAATA	59.584	40.000	5.50	0.00	0.00	1.40
604	615	6.404074	GGTCTTGGCATCAGAAGTTCAAATAG	60.404	42.308	5.50	0.00	0.00	1.73
681	692	8.428063	TGAAATTGCCAAAGAGAAAATAAAGGA	58.572	29.630	0.00	0.00	0.00	3.36
799	810	2.091885	GGGCCCCTTTCATCTGACATTA	60.092	50.000	12.23	0.00	0.00	1.90
870	881	5.519808	TCTATACATTGTCTGTGGACCTCT	58.480	41.667	0.00	0.00	41.47	3.69
879	890	4.148838	GTCTGTGGACCTCTCTATAGCAT	58.851	47.826	0.00	0.00	36.53	3.79
889	900	7.372260	ACCTCTCTATAGCATGAATCACTTT	57.628	36.000	0.00	0.00	0.00	2.66
950	961	1.265905	CGGTAAAAAGAGGTTTGCGCT	59.734	47.619	9.73	0.00	0.00	5.92
951	962	2.664698	CGGTAAAAAGAGGTTTGCGCTC	60.665	50.000	9.73	0.00	0.00	5.03
952	963	2.351447	GGTAAAAAGAGGTTTGCGCTCC	60.351	50.000	9.73	8.89	0.00	4.70
953	964	0.673985	AAAAAGAGGTTTGCGCTCCC	59.326	50.000	9.73	5.64	0.00	4.30
954	965	1.179174	AAAAGAGGTTTGCGCTCCCC	61.179	55.000	9.73	5.22	0.00	4.81
955	966	3.569200	AAGAGGTTTGCGCTCCCCC	62.569	63.158	9.73	3.18	0.00	5.40
973	984	3.590574	GGCCCCCAAACCCTGACT	61.591	66.667	0.00	0.00	0.00	3.41
974	985	2.235761	GGCCCCCAAACCCTGACTA	61.236	63.158	0.00	0.00	0.00	2.59
981	992	1.408822	CCAAACCCTGACTATGCCCTC	60.409	57.143	0.00	0.00	0.00	4.30
989	1000	3.227276	CTATGCCCTCCCGTCGCT	61.227	66.667	0.00	0.00	0.00	4.93
1004	1015	2.036571	CGCTGCCAGACAAGATGCA	61.037	57.895	0.00	0.00	0.00	3.96
1005	1016	1.505353	GCTGCCAGACAAGATGCAC	59.495	57.895	0.00	0.00	0.00	4.57
1023	1034	0.889306	ACAAGCTACTGTCGTCCTCC	59.111	55.000	0.00	0.00	0.00	4.30
1045	1056	1.821332	CAAGCCAAGCCGATCTCCC	60.821	63.158	0.00	0.00	0.00	4.30
1073	1084	1.448013	CGAAGAAACCTCCGGCTCC	60.448	63.158	0.00	0.00	0.00	4.70
1116	1127	3.230005	CTCTCGCCGGATCTCGACG	62.230	68.421	5.05	0.00	45.80	5.12
1307	1318	2.357009	CTGGAATCCAAGCCGATTCTTG	59.643	50.000	2.61	5.44	45.01	3.02
1555	1574	3.524648	TTGAACGTCTCCACCGGCC	62.525	63.158	0.00	0.00	0.00	6.13
1717	1743	2.124983	CGGCCACCACTCTCATGG	60.125	66.667	2.24	0.00	46.10	3.66
1736	1762	3.038280	CGAGAGGGATCTGGAGCG	58.962	66.667	0.00	0.00	0.00	5.03
1744	1770	1.227205	GATCTGGAGCGAGCCACTG	60.227	63.158	0.00	0.00	33.52	3.66
1768	1815	1.001181	CAAGGGATTTGTTGCAGGTGG	59.999	52.381	0.00	0.00	31.92	4.61
1822	1869	3.058914	CGCCGTCCATTTTAGATTGATCC	60.059	47.826	0.00	0.00	0.00	3.36
1966	2016	0.103208	GGTGGAGACTAGTGCGGATG	59.897	60.000	0.00	0.00	0.00	3.51
2001	2051	2.033448	ATCGCCGCCAACCTGAAA	59.967	55.556	0.00	0.00	0.00	2.69
2034	2087	1.208052	CCGATGATGGTGGAGACTGTT	59.792	52.381	0.00	0.00	0.00	3.16
2100	2159	1.818221	GCACCGGCGATATCGTCAAC	61.818	60.000	27.57	14.03	45.47	3.18
2250	2310	1.144057	GTTCCCATCCATCGACGCT	59.856	57.895	0.00	0.00	0.00	5.07
2289	2349	0.692476	TTGATGGGCGGATGATAGGG	59.308	55.000	0.00	0.00	0.00	3.53
2291	2357	0.250513	GATGGGCGGATGATAGGGAC	59.749	60.000	0.00	0.00	0.00	4.46
2295	2361	2.258591	CGGATGATAGGGACGCGG	59.741	66.667	12.47	0.00	0.00	6.46
2296	2362	2.657237	GGATGATAGGGACGCGGG	59.343	66.667	12.47	0.00	0.00	6.13
2297	2363	1.906824	GGATGATAGGGACGCGGGA	60.907	63.158	12.47	0.00	0.00	5.14
2456	2522	3.618752	CGTCACACCTTAATGGACATGGA	60.619	47.826	0.00	0.00	39.71	3.41
2488	2554	0.106335	TCCTAACCGTGCGTTGGAAA	59.894	50.000	0.00	0.00	35.00	3.13
2538	2608	0.179240	CAACTCGACGCATCAGCAAC	60.179	55.000	0.00	0.00	42.27	4.17
2628	2698	1.726791	CGACATCCAAAGAAGTGACCG	59.273	52.381	0.00	0.00	0.00	4.79
2889	6007	5.313712	ACGACAAGACATTTTATGAACCCT	58.686	37.500	0.00	0.00	0.00	4.34
2893	6011	6.074648	ACAAGACATTTTATGAACCCTTGGA	58.925	36.000	0.00	0.00	34.65	3.53
2997	6127	2.807108	CGAGAAAACTATAGGCAGGCCC	60.807	54.545	6.70	0.00	36.58	5.80
3012	6142	2.420890	CCCCTCTCGATGCTCTGC	59.579	66.667	0.00	0.00	0.00	4.26
3031	6161	1.234615	CGTTTGCCATCACGGAACCT	61.235	55.000	0.00	0.00	36.56	3.50
3046	6177	2.056906	AACCTCCTGGCCGGCATATC	62.057	60.000	30.85	11.60	36.63	1.63
3235	6376	5.515106	ACTACCTAGGATCATGATAGCTCC	58.485	45.833	17.98	6.58	0.00	4.70
3236	6377	3.360867	ACCTAGGATCATGATAGCTCCG	58.639	50.000	17.98	0.00	32.87	4.63
3238	6379	2.317371	AGGATCATGATAGCTCCGGT	57.683	50.000	8.54	0.00	32.87	5.28
3239	6380	2.175202	AGGATCATGATAGCTCCGGTC	58.825	52.381	8.54	0.00	32.87	4.79
3289	7458	6.232581	TGTCTTTGTTGGAAAACATGGAAT	57.767	33.333	0.00	0.00	32.01	3.01
3294	7463	5.521906	TGTTGGAAAACATGGAATCGAAA	57.478	34.783	0.00	0.00	0.00	3.46
3298	7467	4.830046	TGGAAAACATGGAATCGAAAGGAA	59.170	37.500	0.00	0.00	0.00	3.36
3300	7469	4.419522	AAACATGGAATCGAAAGGAACG	57.580	40.909	0.00	0.00	0.00	3.95
3492	7688	5.590259	TCATCTGCTTTAATTTAGCACCCTC	59.410	40.000	10.00	0.00	43.30	4.30
3497	7695	5.880332	TGCTTTAATTTAGCACCCTCTACAG	59.120	40.000	10.00	0.00	43.30	2.74
3502	7700	4.796038	TTTAGCACCCTCTACAGTACAC	57.204	45.455	0.00	0.00	0.00	2.90
3507	7705	1.432251	CCTCTACAGTACACCCGCG	59.568	63.158	0.00	0.00	0.00	6.46
3535	7733	1.303091	GCCACCCACGATTAAAGCGT	61.303	55.000	0.00	1.43	43.67	5.07
3542	7740	2.607635	CCACGATTAAAGCGTATGCACT	59.392	45.455	10.11	0.00	46.23	4.40
3544	7742	4.436852	CCACGATTAAAGCGTATGCACTTT	60.437	41.667	10.11	4.61	46.23	2.66
3545	7743	5.220510	CCACGATTAAAGCGTATGCACTTTA	60.221	40.000	10.11	3.61	46.23	1.85
3546	7744	5.896432	CACGATTAAAGCGTATGCACTTTAG	59.104	40.000	10.11	0.00	46.23	1.85
3596	7795	6.378280	TCTTGTTCATGAGAGCTGTATACTCA	59.622	38.462	4.17	4.69	43.25	3.41
3597	7796	6.141560	TGTTCATGAGAGCTGTATACTCAG	57.858	41.667	4.17	0.00	42.55	3.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
121	124	8.306761	AGTGAAATCAGTTTTATGAAATGGGTC	58.693	33.333	0.00	0.00	31.76	4.46
465	475	9.535878	AAATAAGTATTTGAGCGAAACCAAAAA	57.464	25.926	0.00	0.00	36.10	1.94
578	588	2.087646	GAACTTCTGATGCCAAGACCC	58.912	52.381	0.00	0.00	0.00	4.46
681	692	6.037940	GCATCACATGTCAGACTAATTCATGT	59.962	38.462	0.00	0.00	46.20	3.21
870	881	7.812690	AATGCAAAGTGATTCATGCTATAGA	57.187	32.000	3.21	0.00	39.49	1.98
879	890	4.796946	GCCACTCAAATGCAAAGTGATTCA	60.797	41.667	18.13	0.00	42.37	2.57
889	900	1.179152	CCATCTGCCACTCAAATGCA	58.821	50.000	0.00	0.00	0.00	3.96
956	967	1.580994	ATAGTCAGGGTTTGGGGGCC	61.581	60.000	0.00	0.00	0.00	5.80
957	968	0.395724	CATAGTCAGGGTTTGGGGGC	60.396	60.000	0.00	0.00	0.00	5.80
958	969	0.395724	GCATAGTCAGGGTTTGGGGG	60.396	60.000	0.00	0.00	0.00	5.40
959	970	0.395724	GGCATAGTCAGGGTTTGGGG	60.396	60.000	0.00	0.00	0.00	4.96
960	971	0.395724	GGGCATAGTCAGGGTTTGGG	60.396	60.000	0.00	0.00	0.00	4.12
961	972	0.625849	AGGGCATAGTCAGGGTTTGG	59.374	55.000	0.00	0.00	0.00	3.28
962	973	1.408822	GGAGGGCATAGTCAGGGTTTG	60.409	57.143	0.00	0.00	0.00	2.93
973	984	3.536917	CAGCGACGGGAGGGCATA	61.537	66.667	0.00	0.00	36.11	3.14
981	992	4.680237	TTGTCTGGCAGCGACGGG	62.680	66.667	10.34	0.00	34.17	5.28
989	1000	1.241165	CTTGTGCATCTTGTCTGGCA	58.759	50.000	0.00	0.00	0.00	4.92
993	1004	3.244353	ACAGTAGCTTGTGCATCTTGTCT	60.244	43.478	0.00	0.00	42.74	3.41
1004	1015	0.889306	GGAGGACGACAGTAGCTTGT	59.111	55.000	0.00	0.00	0.00	3.16
1005	1016	0.888619	TGGAGGACGACAGTAGCTTG	59.111	55.000	0.00	0.00	0.00	4.01
1023	1034	3.386867	GATCGGCTTGGCTTGCGTG	62.387	63.158	0.00	0.00	0.00	5.34
1030	1041	2.514824	GTGGGAGATCGGCTTGGC	60.515	66.667	0.00	0.00	0.00	4.52
1073	1084	1.374758	GAGAGTGTTGGGCAGTCCG	60.375	63.158	0.00	0.00	46.20	4.79
1080	1091	1.197430	AGGAGCCAGAGAGTGTTGGG	61.197	60.000	0.00	0.00	34.96	4.12
1116	1127	1.680249	GCATGGACTTGGGAGGTTCTC	60.680	57.143	0.00	0.00	0.00	2.87
1278	1289	1.746516	GCTTGGATTCCAGCAGAGGAG	60.747	57.143	17.17	7.75	39.25	3.69
1284	1295	0.034186	AATCGGCTTGGATTCCAGCA	60.034	50.000	21.12	8.60	33.81	4.41
1307	1318	1.455959	TCCCTCCTAGAAGCCGAGC	60.456	63.158	0.00	0.00	0.00	5.03
1717	1743	2.866726	GCTCCAGATCCCTCTCGGC	61.867	68.421	0.00	0.00	0.00	5.54
1736	1762	2.490270	ATCCCTTGTGGCAGTGGCTC	62.490	60.000	18.53	14.88	40.87	4.70
1822	1869	1.291184	TTGATGACAGCAAGCGTCCG	61.291	55.000	1.08	0.00	32.15	4.79
2001	2051	1.379044	CATCGGGGAAAGCAGCCTT	60.379	57.895	0.00	0.00	0.00	4.35
2034	2087	0.392863	CGCCATTGTCCACCAGATGA	60.393	55.000	0.00	0.00	0.00	2.92
2100	2159	5.634859	GGTGCATTTTCTGGTGTATTTTCTG	59.365	40.000	0.00	0.00	0.00	3.02
2250	2310	3.737559	AACCCCAAGTAGATTGCATCA	57.262	42.857	0.00	0.00	37.60	3.07
2289	2349	2.182030	CTCTTGTCCTCCCGCGTC	59.818	66.667	4.92	0.00	0.00	5.19
2291	2357	4.821589	GGCTCTTGTCCTCCCGCG	62.822	72.222	0.00	0.00	0.00	6.46
2295	2361	3.914426	TGAATTAGGCTCTTGTCCTCC	57.086	47.619	0.00	0.00	35.21	4.30
2296	2362	5.289083	AGATGAATTAGGCTCTTGTCCTC	57.711	43.478	0.00	0.00	35.21	3.71
2297	2363	5.435291	CAAGATGAATTAGGCTCTTGTCCT	58.565	41.667	0.00	0.00	39.67	3.85
2456	2522	4.758165	CACGGTTAGGAAAGGTGTTACAAT	59.242	41.667	0.00	0.00	0.00	2.71
2488	2554	1.286305	ACCTTGGGTTGAGTGTGGGT	61.286	55.000	0.00	0.00	27.29	4.51
2719	5747	6.038271	GCAAATTCAGTCCCTATAAACATCGT	59.962	38.462	0.00	0.00	0.00	3.73
2867	5985	5.880054	AGGGTTCATAAAATGTCTTGTCG	57.120	39.130	0.00	0.00	0.00	4.35
2997	6127	0.459237	AAACGCAGAGCATCGAGAGG	60.459	55.000	0.00	0.00	42.67	3.69
3012	6142	1.209127	GGTTCCGTGATGGCAAACG	59.791	57.895	16.47	16.47	39.48	3.60
3070	6201	2.971598	ATGGCTGGACTTCACCCGG	61.972	63.158	0.00	0.00	0.00	5.73
3097	6228	4.043200	GGAAACTGGGCGCTGTGC	62.043	66.667	13.97	4.24	45.38	4.57
3154	6285	8.704234	CAAAGTTCTTCTCTACAATCTACACAC	58.296	37.037	0.00	0.00	0.00	3.82
3155	6286	7.385205	GCAAAGTTCTTCTCTACAATCTACACA	59.615	37.037	0.00	0.00	0.00	3.72
3213	6352	4.578516	CGGAGCTATCATGATCCTAGGTAG	59.421	50.000	12.53	3.16	40.11	3.18
3279	7448	3.190535	CCGTTCCTTTCGATTCCATGTTT	59.809	43.478	0.00	0.00	0.00	2.83
3289	7458	2.773993	ATAAAGCCCGTTCCTTTCGA	57.226	45.000	0.00	0.00	34.58	3.71
3356	7534	0.184451	GTGATCATGCCCCATGGAGT	59.816	55.000	15.22	0.00	41.66	3.85
3492	7688	1.076533	CAAGCGCGGGTGTACTGTAG	61.077	60.000	8.83	0.00	0.00	2.74
3497	7695	2.780149	CTTTGCAAGCGCGGGTGTAC	62.780	60.000	8.83	0.00	42.97	2.90
3535	7733	5.649395	AGATTGAAGCAAGCTAAAGTGCATA	59.351	36.000	10.57	0.00	38.37	3.14
3542	7740	4.697352	GGAGTGAGATTGAAGCAAGCTAAA	59.303	41.667	0.00	0.00	40.30	1.85
3544	7742	3.261643	TGGAGTGAGATTGAAGCAAGCTA	59.738	43.478	0.00	0.00	40.30	3.32
3545	7743	2.039480	TGGAGTGAGATTGAAGCAAGCT	59.961	45.455	0.00	0.00	43.01	3.74
3546	7744	2.430465	TGGAGTGAGATTGAAGCAAGC	58.570	47.619	0.00	0.00	0.00	4.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.