Multiple sequence alignment - TraesCS7B01G071900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G071900 chr7B 100.000 8552 0 0 1 8552 79300144 79308695 0.000000e+00 15793.0
1 TraesCS7B01G071900 chr7B 83.121 314 37 9 2527 2829 79302288 79302596 1.090000e-68 272.0
2 TraesCS7B01G071900 chr7B 83.121 314 37 9 2145 2453 79302670 79302972 1.090000e-68 272.0
3 TraesCS7B01G071900 chr7B 89.320 103 10 1 6632 6734 570175216 570175115 2.510000e-25 128.0
4 TraesCS7B01G071900 chr7A 95.730 4192 146 20 4110 8291 122491341 122495509 0.000000e+00 6719.0
5 TraesCS7B01G071900 chr7A 93.212 3300 129 42 679 3925 122488100 122491357 0.000000e+00 4765.0
6 TraesCS7B01G071900 chr7A 92.366 262 16 2 8293 8552 122497490 122497749 3.770000e-98 370.0
7 TraesCS7B01G071900 chr7A 80.200 500 68 23 187 679 122487554 122488029 6.350000e-91 346.0
8 TraesCS7B01G071900 chr7A 94.907 216 7 4 3921 4136 554383127 554383338 1.380000e-87 335.0
9 TraesCS7B01G071900 chr7A 84.058 345 40 7 1 344 122487425 122487755 1.390000e-82 318.0
10 TraesCS7B01G071900 chr7A 83.819 309 37 7 2150 2453 122489962 122490262 1.820000e-71 281.0
11 TraesCS7B01G071900 chr7A 81.529 314 42 9 2527 2829 122489574 122489882 2.380000e-60 244.0
12 TraesCS7B01G071900 chr7A 88.991 109 11 1 6626 6734 610942475 610942368 5.390000e-27 134.0
13 TraesCS7B01G071900 chr7A 100.000 31 0 0 2896 2926 122490357 122490387 3.330000e-04 58.4
14 TraesCS7B01G071900 chr7D 94.969 2445 87 17 5754 8193 118151686 118154099 0.000000e+00 3801.0
15 TraesCS7B01G071900 chr7D 93.392 1816 76 15 2145 3925 118148194 118150000 0.000000e+00 2649.0
16 TraesCS7B01G071900 chr7D 95.152 1650 50 7 4110 5757 118149984 118151605 0.000000e+00 2577.0
17 TraesCS7B01G071900 chr7D 90.571 1262 46 33 679 1887 118146250 118147491 0.000000e+00 1604.0
18 TraesCS7B01G071900 chr7D 95.258 949 41 3 1884 2829 118147551 118148498 0.000000e+00 1500.0
19 TraesCS7B01G071900 chr7D 86.968 376 27 12 8194 8552 118154295 118154665 3.720000e-108 403.0
20 TraesCS7B01G071900 chr7D 82.803 314 41 7 2145 2453 118148572 118148877 1.420000e-67 268.0
21 TraesCS7B01G071900 chr7D 78.663 389 53 20 298 679 118145804 118146169 1.860000e-56 231.0
22 TraesCS7B01G071900 chr5B 97.949 195 4 0 3916 4110 214934727 214934921 1.060000e-88 339.0
23 TraesCS7B01G071900 chr5B 96.970 198 6 0 3911 4108 233689056 233689253 4.950000e-87 333.0
24 TraesCS7B01G071900 chr5B 95.673 208 6 3 3910 4116 264932554 264932349 1.780000e-86 331.0
25 TraesCS7B01G071900 chr1B 98.942 189 1 1 3921 4109 110623003 110622816 3.820000e-88 337.0
26 TraesCS7B01G071900 chr1B 95.146 206 8 2 3913 4117 341370078 341370282 2.980000e-84 324.0
27 TraesCS7B01G071900 chr4A 98.936 188 1 1 3922 4109 20234725 20234539 1.380000e-87 335.0
28 TraesCS7B01G071900 chr2D 98.429 191 2 1 3923 4113 173536145 173535956 1.380000e-87 335.0
29 TraesCS7B01G071900 chr6B 96.020 201 6 2 3911 4110 129875765 129875964 8.280000e-85 326.0
30 TraesCS7B01G071900 chr6B 84.146 82 9 4 4999 5077 508199426 508199346 9.210000e-10 76.8
31 TraesCS7B01G071900 chr6D 92.727 55 2 2 4998 5051 316318117 316318170 2.560000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G071900 chr7B 79300144 79308695 8551 False 15793.000 15793 100.00000 1 8552 1 chr7B.!!$F1 8551
1 TraesCS7B01G071900 chr7B 79302288 79302972 684 False 272.000 272 83.12100 2145 2829 2 chr7B.!!$F2 684
2 TraesCS7B01G071900 chr7A 122487425 122497749 10324 False 1637.675 6719 88.86425 1 8552 8 chr7A.!!$F2 8551
3 TraesCS7B01G071900 chr7D 118145804 118154665 8861 False 1629.125 3801 89.72200 298 8552 8 chr7D.!!$F1 8254

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.322456 TAAGGCAGTCCATGTGGCAC 60.322 55.000 11.55 11.55 42.81 5.01 F
1193 1331 0.316204 AATTTCGTCCTCGTGGTCGT 59.684 50.000 19.58 1.74 43.48 4.34 F
1194 1332 0.316204 ATTTCGTCCTCGTGGTCGTT 59.684 50.000 19.58 6.62 43.48 3.85 F
1198 1336 0.453950 CGTCCTCGTGGTCGTTACTG 60.454 60.000 13.75 0.00 39.42 2.74 F
1199 1337 0.731855 GTCCTCGTGGTCGTTACTGC 60.732 60.000 2.99 0.00 38.33 4.40 F
1201 1339 0.732880 CCTCGTGGTCGTTACTGCTG 60.733 60.000 0.00 0.00 38.33 4.41 F
1374 1535 1.216710 GCTACCTTCGCTGTCTGCT 59.783 57.895 0.00 0.00 40.11 4.24 F
1718 1882 1.268899 CAAGTTTCAGCTTCTGCCCAG 59.731 52.381 0.00 0.00 40.80 4.45 F
3938 4607 0.036875 AGTTTCGAAGGGGAGCCTTG 59.963 55.000 0.00 0.00 0.00 3.61 F
3986 4655 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69 F
3995 4664 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53 F
4010 4679 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26 F
4109 4778 0.541764 CACTGGGGCTGCCCTTTTTA 60.542 55.000 34.99 16.27 44.66 1.52 F
4921 5591 0.868406 CTGAAGAGCCGTGTGGTTTC 59.132 55.000 0.00 0.00 37.67 2.78 F
6654 7428 0.034670 GCCAGATTGGTCTTCCAGCT 60.035 55.000 0.00 0.00 45.22 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 1796 0.456653 GAGCGATTGCAAATGCCGTT 60.457 50.000 19.13 11.43 46.23 4.44 R
2068 2296 3.610040 ATCGCATGTAACTGTCCAAGA 57.390 42.857 0.00 0.00 0.00 3.02 R
2978 3646 4.098349 GCCTGCAAATGATCTCCATTACAA 59.902 41.667 0.00 0.00 44.28 2.41 R
3092 3760 5.890334 TGTAACAAAAAGTTTGCTCCAGAG 58.110 37.500 0.68 0.00 41.64 3.35 R
3131 3799 6.139671 AGAAGGTATGTGGTATGATGAGAGT 58.860 40.000 0.00 0.00 0.00 3.24 R
3304 3972 2.787249 CGCCAGGAACATTCTGCG 59.213 61.111 0.00 8.50 35.06 5.18 R
3614 4282 6.949578 ATTTATGATGCAAAAGGAAACACG 57.050 33.333 0.00 0.00 0.00 4.49 R
3956 4625 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 R
5853 6626 1.328680 CTGCATCGTGCCTATTCACAC 59.671 52.381 7.38 0.00 44.23 3.82 R
6249 7022 7.383572 CCTACATCTTATAAGCACACAAGCTAG 59.616 40.741 7.67 0.00 45.89 3.42 R
6308 7081 5.869649 AACTACAAGCCACAAGGAAATTT 57.130 34.783 0.00 0.00 36.89 1.82 R
6588 7362 1.002430 ACTGATCGCCTTGTGTGTCAT 59.998 47.619 0.00 0.00 0.00 3.06 R
6633 7407 0.036010 CTGGAAGACCAATCTGGCGT 60.036 55.000 0.00 0.00 46.32 5.68 R
7421 8195 0.034059 CTCCACCTCAACTTCAGCGT 59.966 55.000 0.00 0.00 0.00 5.07 R
8065 8849 0.322975 GAGGTGCAGTCTCCACATGT 59.677 55.000 0.00 0.00 34.94 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.898320 ACCACTCACGAGAATGGAGG 59.102 55.000 17.27 0.23 36.04 4.30
33 34 4.020218 ACTCACGAGAATGGAGGATTTCAA 60.020 41.667 0.00 0.00 32.98 2.69
62 63 5.186992 GTCCCCAATAAACAATTAAGGCAGT 59.813 40.000 0.00 0.00 0.00 4.40
71 72 1.767759 ATTAAGGCAGTCCATGTGGC 58.232 50.000 0.57 0.57 40.72 5.01
73 74 0.322456 TAAGGCAGTCCATGTGGCAC 60.322 55.000 11.55 11.55 42.81 5.01
93 94 4.083802 GCACTTTCAGCTCTCATACGTTTT 60.084 41.667 0.00 0.00 0.00 2.43
96 97 5.934625 ACTTTCAGCTCTCATACGTTTTCAT 59.065 36.000 0.00 0.00 0.00 2.57
154 155 1.823797 TACCCACAAAACGGCATACC 58.176 50.000 0.00 0.00 0.00 2.73
192 193 2.423185 TGATCAATTCACCGCACATTCC 59.577 45.455 0.00 0.00 0.00 3.01
200 201 0.387565 ACCGCACATTCCCACAAAAC 59.612 50.000 0.00 0.00 0.00 2.43
202 203 1.274798 CGCACATTCCCACAAAACGC 61.275 55.000 0.00 0.00 0.00 4.84
203 204 0.943835 GCACATTCCCACAAAACGCC 60.944 55.000 0.00 0.00 0.00 5.68
204 205 0.387202 CACATTCCCACAAAACGCCA 59.613 50.000 0.00 0.00 0.00 5.69
205 206 1.000731 CACATTCCCACAAAACGCCAT 59.999 47.619 0.00 0.00 0.00 4.40
206 207 2.230025 CACATTCCCACAAAACGCCATA 59.770 45.455 0.00 0.00 0.00 2.74
207 208 2.894126 ACATTCCCACAAAACGCCATAA 59.106 40.909 0.00 0.00 0.00 1.90
208 209 3.249917 CATTCCCACAAAACGCCATAAC 58.750 45.455 0.00 0.00 0.00 1.89
209 210 2.279935 TCCCACAAAACGCCATAACT 57.720 45.000 0.00 0.00 0.00 2.24
210 211 2.588620 TCCCACAAAACGCCATAACTT 58.411 42.857 0.00 0.00 0.00 2.66
211 212 3.752665 TCCCACAAAACGCCATAACTTA 58.247 40.909 0.00 0.00 0.00 2.24
212 213 3.502979 TCCCACAAAACGCCATAACTTAC 59.497 43.478 0.00 0.00 0.00 2.34
213 214 3.366577 CCCACAAAACGCCATAACTTACC 60.367 47.826 0.00 0.00 0.00 2.85
214 215 3.253677 CCACAAAACGCCATAACTTACCA 59.746 43.478 0.00 0.00 0.00 3.25
215 216 4.261656 CCACAAAACGCCATAACTTACCAA 60.262 41.667 0.00 0.00 0.00 3.67
216 217 4.677832 CACAAAACGCCATAACTTACCAAC 59.322 41.667 0.00 0.00 0.00 3.77
217 218 4.338682 ACAAAACGCCATAACTTACCAACA 59.661 37.500 0.00 0.00 0.00 3.33
218 219 5.010213 ACAAAACGCCATAACTTACCAACAT 59.990 36.000 0.00 0.00 0.00 2.71
219 220 4.957759 AACGCCATAACTTACCAACATC 57.042 40.909 0.00 0.00 0.00 3.06
220 221 4.216411 ACGCCATAACTTACCAACATCT 57.784 40.909 0.00 0.00 0.00 2.90
221 222 4.585879 ACGCCATAACTTACCAACATCTT 58.414 39.130 0.00 0.00 0.00 2.40
222 223 4.634443 ACGCCATAACTTACCAACATCTTC 59.366 41.667 0.00 0.00 0.00 2.87
223 224 4.035208 CGCCATAACTTACCAACATCTTCC 59.965 45.833 0.00 0.00 0.00 3.46
224 225 4.947388 GCCATAACTTACCAACATCTTCCA 59.053 41.667 0.00 0.00 0.00 3.53
225 226 5.594317 GCCATAACTTACCAACATCTTCCAT 59.406 40.000 0.00 0.00 0.00 3.41
226 227 6.460123 GCCATAACTTACCAACATCTTCCATG 60.460 42.308 0.00 0.00 0.00 3.66
227 228 6.828273 CCATAACTTACCAACATCTTCCATGA 59.172 38.462 0.00 0.00 0.00 3.07
228 229 7.503566 CCATAACTTACCAACATCTTCCATGAT 59.496 37.037 0.00 0.00 0.00 2.45
229 230 8.562892 CATAACTTACCAACATCTTCCATGATC 58.437 37.037 0.00 0.00 0.00 2.92
230 231 5.440610 ACTTACCAACATCTTCCATGATCC 58.559 41.667 0.00 0.00 0.00 3.36
231 232 3.303351 ACCAACATCTTCCATGATCCC 57.697 47.619 0.00 0.00 0.00 3.85
232 233 2.854967 ACCAACATCTTCCATGATCCCT 59.145 45.455 0.00 0.00 0.00 4.20
233 234 4.047166 ACCAACATCTTCCATGATCCCTA 58.953 43.478 0.00 0.00 0.00 3.53
234 235 4.666907 ACCAACATCTTCCATGATCCCTAT 59.333 41.667 0.00 0.00 0.00 2.57
235 236 5.008331 CCAACATCTTCCATGATCCCTATG 58.992 45.833 0.00 0.00 0.00 2.23
236 237 5.457197 CCAACATCTTCCATGATCCCTATGT 60.457 44.000 0.00 0.00 0.00 2.29
237 238 5.495926 ACATCTTCCATGATCCCTATGTC 57.504 43.478 0.00 0.00 0.00 3.06
238 239 4.909695 ACATCTTCCATGATCCCTATGTCA 59.090 41.667 0.00 0.00 0.00 3.58
239 240 5.370584 ACATCTTCCATGATCCCTATGTCAA 59.629 40.000 0.00 0.00 0.00 3.18
240 241 6.045224 ACATCTTCCATGATCCCTATGTCAAT 59.955 38.462 0.00 0.00 0.00 2.57
241 242 7.238305 ACATCTTCCATGATCCCTATGTCAATA 59.762 37.037 0.00 0.00 0.00 1.90
242 243 7.009179 TCTTCCATGATCCCTATGTCAATAC 57.991 40.000 0.00 0.00 0.00 1.89
243 244 5.405935 TCCATGATCCCTATGTCAATACG 57.594 43.478 0.00 0.00 0.00 3.06
244 245 4.838423 TCCATGATCCCTATGTCAATACGT 59.162 41.667 0.00 0.00 0.00 3.57
245 246 5.047306 TCCATGATCCCTATGTCAATACGTC 60.047 44.000 0.00 0.00 0.00 4.34
246 247 4.499037 TGATCCCTATGTCAATACGTCG 57.501 45.455 0.00 0.00 0.00 5.12
247 248 2.787601 TCCCTATGTCAATACGTCGC 57.212 50.000 0.00 0.00 0.00 5.19
248 249 1.002142 TCCCTATGTCAATACGTCGCG 60.002 52.381 0.00 0.00 0.00 5.87
249 250 1.268896 CCCTATGTCAATACGTCGCGT 60.269 52.381 5.77 9.64 44.35 6.01
250 251 1.779157 CCTATGTCAATACGTCGCGTG 59.221 52.381 5.77 2.22 41.39 5.34
251 252 2.447250 CTATGTCAATACGTCGCGTGT 58.553 47.619 5.77 9.11 41.39 4.49
252 253 2.547913 ATGTCAATACGTCGCGTGTA 57.452 45.000 5.77 11.24 41.39 2.90
253 254 2.547913 TGTCAATACGTCGCGTGTAT 57.452 45.000 17.01 17.01 41.39 2.29
254 255 3.672028 TGTCAATACGTCGCGTGTATA 57.328 42.857 20.99 8.99 41.39 1.47
255 256 3.353524 TGTCAATACGTCGCGTGTATAC 58.646 45.455 20.99 17.47 41.39 1.47
256 257 2.715997 GTCAATACGTCGCGTGTATACC 59.284 50.000 20.99 11.74 41.39 2.73
257 258 2.613595 TCAATACGTCGCGTGTATACCT 59.386 45.455 20.99 8.44 41.39 3.08
258 259 3.807071 TCAATACGTCGCGTGTATACCTA 59.193 43.478 20.99 9.11 41.39 3.08
259 260 3.795561 ATACGTCGCGTGTATACCTAC 57.204 47.619 19.87 2.40 41.39 3.18
260 261 1.368641 ACGTCGCGTGTATACCTACA 58.631 50.000 5.77 0.00 39.18 2.74
261 262 1.737236 ACGTCGCGTGTATACCTACAA 59.263 47.619 5.77 0.00 39.51 2.41
262 263 2.161410 ACGTCGCGTGTATACCTACAAA 59.839 45.455 5.77 0.00 39.51 2.83
263 264 3.170505 CGTCGCGTGTATACCTACAAAA 58.829 45.455 5.77 0.00 39.51 2.44
264 265 3.792956 CGTCGCGTGTATACCTACAAAAT 59.207 43.478 5.77 0.00 39.51 1.82
265 266 4.316861 CGTCGCGTGTATACCTACAAAATG 60.317 45.833 5.77 0.00 39.51 2.32
266 267 3.552699 TCGCGTGTATACCTACAAAATGC 59.447 43.478 5.77 0.00 39.51 3.56
272 273 6.073440 CGTGTATACCTACAAAATGCCATACC 60.073 42.308 0.00 0.00 39.51 2.73
287 288 5.376625 TGCCATACCTTATCAACATCTTCC 58.623 41.667 0.00 0.00 0.00 3.46
288 289 4.452455 GCCATACCTTATCAACATCTTCCG 59.548 45.833 0.00 0.00 0.00 4.30
293 294 5.360591 ACCTTATCAACATCTTCCGTGATC 58.639 41.667 0.00 0.00 0.00 2.92
340 342 3.560068 CGCCATACCTTACAACATCTTCC 59.440 47.826 0.00 0.00 0.00 3.46
351 353 0.898789 ACATCTTCCGTGACCCGTCT 60.899 55.000 0.00 0.00 33.66 4.18
390 392 3.188159 ACGCCGTACCATATCAACATT 57.812 42.857 0.00 0.00 0.00 2.71
423 426 1.765904 TGCATCAATAAGGCGGGACTA 59.234 47.619 0.00 0.00 0.00 2.59
455 458 1.098050 GAAGGCCTGCTTACATGGTG 58.902 55.000 5.69 0.00 0.00 4.17
475 478 2.188912 ATGTTTACACATGGCCCGC 58.811 52.632 0.00 0.00 42.46 6.13
480 483 2.845752 TTACACATGGCCCGCGTCTC 62.846 60.000 4.92 0.00 0.00 3.36
488 491 1.498865 GGCCCGCGTCTCAATGTATG 61.499 60.000 4.92 0.00 0.00 2.39
489 492 0.529773 GCCCGCGTCTCAATGTATGA 60.530 55.000 4.92 0.00 36.38 2.15
490 493 1.209128 CCCGCGTCTCAATGTATGAC 58.791 55.000 4.92 0.00 33.47 3.06
550 566 4.645762 ACACACAAATGTACATGCACAA 57.354 36.364 9.63 0.00 36.72 3.33
552 569 5.414360 ACACACAAATGTACATGCACAAAA 58.586 33.333 9.63 0.00 36.72 2.44
689 791 0.693049 TTCCTTTGGGCAGGAGACTC 59.307 55.000 0.00 0.00 44.18 3.36
695 797 3.386237 GGCAGGAGACTCGGCTGT 61.386 66.667 14.91 0.00 40.21 4.40
877 988 1.544982 CCAGCTAGCCGCCTACTACTA 60.545 57.143 12.13 0.00 40.39 1.82
880 991 1.805943 GCTAGCCGCCTACTACTACTC 59.194 57.143 2.29 0.00 0.00 2.59
1123 1261 3.121019 CCCTCGACATCGGAGGTC 58.879 66.667 12.50 12.50 40.29 3.85
1158 1296 7.833285 TCATAATTTTTATAAGCTCCCCACC 57.167 36.000 0.00 0.00 0.00 4.61
1165 1303 1.614241 TAAGCTCCCCACCGCTTCTC 61.614 60.000 0.00 0.00 44.64 2.87
1166 1304 3.394836 GCTCCCCACCGCTTCTCT 61.395 66.667 0.00 0.00 0.00 3.10
1167 1305 2.896443 CTCCCCACCGCTTCTCTC 59.104 66.667 0.00 0.00 0.00 3.20
1168 1306 2.683933 TCCCCACCGCTTCTCTCC 60.684 66.667 0.00 0.00 0.00 3.71
1170 1308 2.294078 CCCCACCGCTTCTCTCCTT 61.294 63.158 0.00 0.00 0.00 3.36
1171 1309 1.219393 CCCACCGCTTCTCTCCTTC 59.781 63.158 0.00 0.00 0.00 3.46
1172 1310 1.261238 CCCACCGCTTCTCTCCTTCT 61.261 60.000 0.00 0.00 0.00 2.85
1175 1313 1.273606 CACCGCTTCTCTCCTTCTGAA 59.726 52.381 0.00 0.00 0.00 3.02
1178 1316 3.008485 ACCGCTTCTCTCCTTCTGAATTT 59.992 43.478 0.00 0.00 0.00 1.82
1181 1319 4.249661 GCTTCTCTCCTTCTGAATTTCGT 58.750 43.478 0.00 0.00 0.00 3.85
1183 1321 4.457834 TCTCTCCTTCTGAATTTCGTCC 57.542 45.455 0.00 0.00 0.00 4.79
1184 1322 4.090090 TCTCTCCTTCTGAATTTCGTCCT 58.910 43.478 0.00 0.00 0.00 3.85
1185 1323 4.158764 TCTCTCCTTCTGAATTTCGTCCTC 59.841 45.833 0.00 0.00 0.00 3.71
1186 1324 3.119459 TCTCCTTCTGAATTTCGTCCTCG 60.119 47.826 0.00 0.00 38.55 4.63
1187 1325 2.561419 TCCTTCTGAATTTCGTCCTCGT 59.439 45.455 0.00 0.00 38.33 4.18
1188 1326 2.668457 CCTTCTGAATTTCGTCCTCGTG 59.332 50.000 0.00 0.00 38.33 4.35
1189 1327 2.363788 TCTGAATTTCGTCCTCGTGG 57.636 50.000 0.00 0.00 38.33 4.94
1190 1328 1.616865 TCTGAATTTCGTCCTCGTGGT 59.383 47.619 2.99 0.00 38.33 4.16
1191 1329 1.993370 CTGAATTTCGTCCTCGTGGTC 59.007 52.381 2.99 0.00 38.33 4.02
1192 1330 0.989890 GAATTTCGTCCTCGTGGTCG 59.010 55.000 15.44 15.44 44.17 4.79
1193 1331 0.316204 AATTTCGTCCTCGTGGTCGT 59.684 50.000 19.58 1.74 43.48 4.34
1194 1332 0.316204 ATTTCGTCCTCGTGGTCGTT 59.684 50.000 19.58 6.62 43.48 3.85
1195 1333 0.950836 TTTCGTCCTCGTGGTCGTTA 59.049 50.000 19.58 9.07 43.48 3.18
1198 1336 0.453950 CGTCCTCGTGGTCGTTACTG 60.454 60.000 13.75 0.00 39.42 2.74
1199 1337 0.731855 GTCCTCGTGGTCGTTACTGC 60.732 60.000 2.99 0.00 38.33 4.40
1200 1338 0.892358 TCCTCGTGGTCGTTACTGCT 60.892 55.000 2.99 0.00 38.33 4.24
1201 1339 0.732880 CCTCGTGGTCGTTACTGCTG 60.733 60.000 0.00 0.00 38.33 4.41
1202 1340 1.344942 CTCGTGGTCGTTACTGCTGC 61.345 60.000 0.00 0.00 38.33 5.25
1203 1341 1.372997 CGTGGTCGTTACTGCTGCT 60.373 57.895 0.00 0.00 0.00 4.24
1204 1342 1.617755 CGTGGTCGTTACTGCTGCTG 61.618 60.000 4.89 4.89 0.00 4.41
1205 1343 1.667830 TGGTCGTTACTGCTGCTGC 60.668 57.895 8.89 8.89 40.20 5.25
1374 1535 1.216710 GCTACCTTCGCTGTCTGCT 59.783 57.895 0.00 0.00 40.11 4.24
1385 1546 2.301902 CTGTCTGCTGCGCCGAATTC 62.302 60.000 4.18 0.00 0.00 2.17
1390 1551 2.098298 CTGCGCCGAATTCGTTGG 59.902 61.111 25.10 14.80 37.74 3.77
1398 1559 2.159693 GCCGAATTCGTTGGTTCTTCTC 60.160 50.000 25.10 0.00 37.74 2.87
1400 1561 3.123621 CCGAATTCGTTGGTTCTTCTCTG 59.876 47.826 25.10 2.13 37.74 3.35
1574 1737 2.882927 TGTTGCTGTCGACTTGTAGT 57.117 45.000 17.92 0.00 0.00 2.73
1584 1747 5.965922 TGTCGACTTGTAGTTCATGATCAT 58.034 37.500 17.92 1.18 0.00 2.45
1585 1748 6.036470 TGTCGACTTGTAGTTCATGATCATC 58.964 40.000 17.92 0.00 0.00 2.92
1586 1749 6.127619 TGTCGACTTGTAGTTCATGATCATCT 60.128 38.462 17.92 2.84 0.00 2.90
1587 1750 6.416455 GTCGACTTGTAGTTCATGATCATCTC 59.584 42.308 8.70 0.00 0.00 2.75
1718 1882 1.268899 CAAGTTTCAGCTTCTGCCCAG 59.731 52.381 0.00 0.00 40.80 4.45
1829 1994 2.358737 CAGGGACAACGACAGGGC 60.359 66.667 0.00 0.00 0.00 5.19
1861 2026 7.559590 AGAAAATATGACACTGAAGGTATGC 57.440 36.000 0.00 0.00 0.00 3.14
1868 2033 4.515191 TGACACTGAAGGTATGCTTTGTTC 59.485 41.667 0.00 0.00 0.00 3.18
1926 2154 5.822519 GCTTATGACCCACAAGATGAATACA 59.177 40.000 0.00 0.00 0.00 2.29
1970 2198 2.036733 ACGCAGTTAGCACTTGGAAGTA 59.963 45.455 0.00 0.00 37.78 2.24
1971 2199 3.064207 CGCAGTTAGCACTTGGAAGTAA 58.936 45.455 0.00 0.00 46.13 2.24
2001 2229 8.832521 TCTATTTATTTGCCGTAACTTGTATGG 58.167 33.333 0.00 0.00 0.00 2.74
2068 2296 2.555325 CACATTCATTCTGCACCAGTGT 59.445 45.455 0.00 0.00 32.61 3.55
2085 2313 3.187227 CAGTGTCTTGGACAGTTACATGC 59.813 47.826 5.40 0.00 42.73 4.06
2932 3600 9.762933 ATTTTGTATTGTTTGATTGTTAGCAGT 57.237 25.926 0.00 0.00 0.00 4.40
2935 3603 9.838975 TTGTATTGTTTGATTGTTAGCAGTATG 57.161 29.630 0.00 0.00 40.87 2.39
2936 3604 9.008965 TGTATTGTTTGATTGTTAGCAGTATGT 57.991 29.630 0.00 0.00 39.31 2.29
2937 3605 9.840427 GTATTGTTTGATTGTTAGCAGTATGTT 57.160 29.630 0.00 0.00 39.31 2.71
2939 3607 9.762933 ATTGTTTGATTGTTAGCAGTATGTTTT 57.237 25.926 0.00 0.00 39.31 2.43
2945 3613 9.665719 TGATTGTTAGCAGTATGTTTTATCTGA 57.334 29.630 0.00 0.00 39.31 3.27
2947 3615 8.492673 TTGTTAGCAGTATGTTTTATCTGAGG 57.507 34.615 0.00 0.00 39.31 3.86
2948 3616 7.620880 TGTTAGCAGTATGTTTTATCTGAGGT 58.379 34.615 0.00 0.00 39.31 3.85
2949 3617 7.549134 TGTTAGCAGTATGTTTTATCTGAGGTG 59.451 37.037 0.00 0.00 39.31 4.00
2950 3618 5.431765 AGCAGTATGTTTTATCTGAGGTGG 58.568 41.667 0.00 0.00 39.31 4.61
2951 3619 5.189736 AGCAGTATGTTTTATCTGAGGTGGA 59.810 40.000 0.00 0.00 39.31 4.02
2952 3620 6.058183 GCAGTATGTTTTATCTGAGGTGGAT 58.942 40.000 0.00 0.00 39.31 3.41
2953 3621 6.543831 GCAGTATGTTTTATCTGAGGTGGATT 59.456 38.462 0.00 0.00 39.31 3.01
2954 3622 7.467811 GCAGTATGTTTTATCTGAGGTGGATTG 60.468 40.741 0.00 0.00 39.31 2.67
2955 3623 7.554118 CAGTATGTTTTATCTGAGGTGGATTGT 59.446 37.037 0.00 0.00 0.00 2.71
2978 3646 7.047891 TGTAAAATAGCTTGACCAGAATCGAT 58.952 34.615 0.00 0.00 0.00 3.59
3131 3799 5.794726 TGTTACAGGTGAGTTGTAAGCTA 57.205 39.130 0.00 0.00 40.55 3.32
3304 3972 6.515272 TTTCCATTTAACTGATGCTTCCTC 57.485 37.500 0.00 0.00 0.00 3.71
3614 4282 1.897560 AACAGGCTGCAAGAGGTAAC 58.102 50.000 15.89 0.00 34.07 2.50
3785 4453 1.905354 GCCTGCCAGAAGGTTTGCT 60.905 57.895 0.00 0.00 39.75 3.91
3801 4469 2.352805 CTGTCACCCTCCTTGCCC 59.647 66.667 0.00 0.00 0.00 5.36
3849 4518 5.220586 GCCTTTTCTTTTGTGGTAGTTTTGC 60.221 40.000 0.00 0.00 0.00 3.68
3850 4519 5.293324 CCTTTTCTTTTGTGGTAGTTTTGCC 59.707 40.000 0.00 0.00 0.00 4.52
3883 4552 3.329520 TGCCCTAGTGTGTAGGTCAATTT 59.670 43.478 0.00 0.00 32.88 1.82
3884 4553 3.689649 GCCCTAGTGTGTAGGTCAATTTG 59.310 47.826 0.00 0.00 32.88 2.32
3909 4578 6.481644 GGTCAGACTTGAATATTTGCTAGGAG 59.518 42.308 0.00 0.00 34.49 3.69
3910 4579 7.268586 GTCAGACTTGAATATTTGCTAGGAGA 58.731 38.462 0.00 0.00 34.49 3.71
3911 4580 7.766278 GTCAGACTTGAATATTTGCTAGGAGAA 59.234 37.037 0.00 0.00 34.49 2.87
3912 4581 8.489489 TCAGACTTGAATATTTGCTAGGAGAAT 58.511 33.333 0.00 0.00 0.00 2.40
3913 4582 9.770097 CAGACTTGAATATTTGCTAGGAGAATA 57.230 33.333 0.00 0.00 0.00 1.75
3925 4594 8.818141 TTGCTAGGAGAATATTGATAGTTTCG 57.182 34.615 0.00 0.00 0.00 3.46
3926 4595 8.178313 TGCTAGGAGAATATTGATAGTTTCGA 57.822 34.615 0.00 0.00 0.00 3.71
3927 4596 8.638873 TGCTAGGAGAATATTGATAGTTTCGAA 58.361 33.333 0.00 0.00 0.00 3.71
3928 4597 9.134734 GCTAGGAGAATATTGATAGTTTCGAAG 57.865 37.037 0.00 0.00 0.00 3.79
3929 4598 9.632807 CTAGGAGAATATTGATAGTTTCGAAGG 57.367 37.037 0.00 0.00 0.00 3.46
3930 4599 7.445945 AGGAGAATATTGATAGTTTCGAAGGG 58.554 38.462 0.00 0.00 0.00 3.95
3931 4600 6.651225 GGAGAATATTGATAGTTTCGAAGGGG 59.349 42.308 0.00 0.00 0.00 4.79
3932 4601 7.374975 AGAATATTGATAGTTTCGAAGGGGA 57.625 36.000 0.00 0.00 0.00 4.81
3933 4602 7.445945 AGAATATTGATAGTTTCGAAGGGGAG 58.554 38.462 0.00 0.00 0.00 4.30
3934 4603 2.981859 TGATAGTTTCGAAGGGGAGC 57.018 50.000 0.00 0.00 0.00 4.70
3935 4604 1.485066 TGATAGTTTCGAAGGGGAGCC 59.515 52.381 0.00 0.00 0.00 4.70
3936 4605 1.763545 GATAGTTTCGAAGGGGAGCCT 59.236 52.381 0.00 0.00 0.00 4.58
3937 4606 1.652947 TAGTTTCGAAGGGGAGCCTT 58.347 50.000 0.00 0.00 0.00 4.35
3938 4607 0.036875 AGTTTCGAAGGGGAGCCTTG 59.963 55.000 0.00 0.00 0.00 3.61
3939 4608 0.960861 GTTTCGAAGGGGAGCCTTGG 60.961 60.000 0.00 0.00 0.00 3.61
3940 4609 2.764637 TTTCGAAGGGGAGCCTTGGC 62.765 60.000 2.97 2.97 0.00 4.52
3949 4618 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3950 4619 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3951 4620 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3952 4621 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3953 4622 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3954 4623 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3955 4624 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3960 4629 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3961 4630 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3962 4631 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3963 4632 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3964 4633 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3965 4634 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3966 4635 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3967 4636 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3968 4637 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3969 4638 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3970 4639 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3971 4640 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3972 4641 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3973 4642 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3974 4643 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3984 4653 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3985 4654 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3986 4655 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3987 4656 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3988 4657 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3989 4658 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3990 4659 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3991 4660 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3992 4661 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3993 4662 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3994 4663 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3995 4664 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3996 4665 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3997 4666 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3998 4667 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
4009 4678 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
4010 4679 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
4011 4680 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
4012 4681 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
4013 4682 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
4014 4683 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
4015 4684 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
4016 4685 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
4017 4686 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
4018 4687 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
4019 4688 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
4020 4689 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
4021 4690 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
4022 4691 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
4023 4692 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
4024 4693 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
4025 4694 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
4026 4695 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
4027 4696 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
4028 4697 3.690460 CAGAAATGTAGGGAAAGGCTGT 58.310 45.455 0.00 0.00 0.00 4.40
4029 4698 3.441572 CAGAAATGTAGGGAAAGGCTGTG 59.558 47.826 0.00 0.00 0.00 3.66
4030 4699 3.074538 AGAAATGTAGGGAAAGGCTGTGT 59.925 43.478 0.00 0.00 0.00 3.72
4031 4700 4.288626 AGAAATGTAGGGAAAGGCTGTGTA 59.711 41.667 0.00 0.00 0.00 2.90
4032 4701 3.629142 ATGTAGGGAAAGGCTGTGTAC 57.371 47.619 0.00 0.00 0.00 2.90
4033 4702 2.331166 TGTAGGGAAAGGCTGTGTACA 58.669 47.619 0.00 0.00 0.00 2.90
4034 4703 2.706723 TGTAGGGAAAGGCTGTGTACAA 59.293 45.455 0.00 0.00 0.00 2.41
4035 4704 3.329520 TGTAGGGAAAGGCTGTGTACAAT 59.670 43.478 0.00 0.00 0.00 2.71
4036 4705 4.532916 TGTAGGGAAAGGCTGTGTACAATA 59.467 41.667 0.00 0.00 0.00 1.90
4037 4706 4.222124 AGGGAAAGGCTGTGTACAATAG 57.778 45.455 0.00 0.04 0.00 1.73
4038 4707 3.844211 AGGGAAAGGCTGTGTACAATAGA 59.156 43.478 11.47 0.00 0.00 1.98
4039 4708 3.939592 GGGAAAGGCTGTGTACAATAGAC 59.060 47.826 11.47 8.92 0.00 2.59
4040 4709 3.939592 GGAAAGGCTGTGTACAATAGACC 59.060 47.826 9.92 10.50 0.00 3.85
4041 4710 3.629142 AAGGCTGTGTACAATAGACCC 57.371 47.619 9.92 4.45 0.00 4.46
4042 4711 2.546899 AGGCTGTGTACAATAGACCCA 58.453 47.619 9.92 0.00 0.00 4.51
4043 4712 2.910319 AGGCTGTGTACAATAGACCCAA 59.090 45.455 9.92 0.00 0.00 4.12
4044 4713 3.329520 AGGCTGTGTACAATAGACCCAAA 59.670 43.478 9.92 0.00 0.00 3.28
4045 4714 3.689649 GGCTGTGTACAATAGACCCAAAG 59.310 47.826 11.47 0.00 0.00 2.77
4046 4715 4.324267 GCTGTGTACAATAGACCCAAAGT 58.676 43.478 11.47 0.00 0.00 2.66
4047 4716 4.154195 GCTGTGTACAATAGACCCAAAGTG 59.846 45.833 11.47 0.00 0.00 3.16
4048 4717 4.647611 TGTGTACAATAGACCCAAAGTGG 58.352 43.478 0.00 0.00 37.25 4.00
4049 4718 4.103469 TGTGTACAATAGACCCAAAGTGGT 59.897 41.667 0.00 0.00 42.79 4.16
4054 4723 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
4055 4724 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
4056 4725 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
4057 4726 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
4058 4727 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
4059 4728 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4060 4729 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4061 4730 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4062 4731 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
4063 4732 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
4064 4733 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
4065 4734 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
4066 4735 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
4067 4736 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
4068 4737 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
4069 4738 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
4070 4739 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
4071 4740 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
4072 4741 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
4073 4742 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
4094 4763 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
4095 4764 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
4096 4765 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
4097 4766 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
4098 4767 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
4099 4768 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
4100 4769 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
4101 4770 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
4102 4771 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
4107 4776 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
4108 4777 1.838396 CACTGGGGCTGCCCTTTTT 60.838 57.895 34.99 15.74 44.66 1.94
4109 4778 0.541764 CACTGGGGCTGCCCTTTTTA 60.542 55.000 34.99 16.27 44.66 1.52
4138 4807 9.956720 ATATTGATAGTTTCATTGCTTGCTTAC 57.043 29.630 0.00 0.00 33.34 2.34
4539 5208 7.362662 CACAAGTGAGTTTATGTTATGTGCTT 58.637 34.615 0.00 0.00 30.66 3.91
4544 5213 5.163864 TGAGTTTATGTTATGTGCTTCTGCG 60.164 40.000 0.00 0.00 43.34 5.18
4557 5226 5.855925 TGTGCTTCTGCGTGTTATTAAATTG 59.144 36.000 0.00 0.00 43.34 2.32
4885 5555 1.568504 TGCTTCCGTAGTCCCTGATT 58.431 50.000 0.00 0.00 0.00 2.57
4899 5569 5.306678 AGTCCCTGATTCCTGCTATAGAAAG 59.693 44.000 3.21 0.00 0.00 2.62
4921 5591 0.868406 CTGAAGAGCCGTGTGGTTTC 59.132 55.000 0.00 0.00 37.67 2.78
4980 5650 3.008266 GCATTTATGGGGGCATTATGCTT 59.992 43.478 17.13 0.56 44.28 3.91
4999 5669 5.248640 TGCTTCGATTGATCTCTCCTTTTT 58.751 37.500 0.00 0.00 0.00 1.94
5411 6082 9.647918 AAGAGGATTCTAAAGAAACTCCTTTTT 57.352 29.630 13.56 9.88 41.28 1.94
5622 6293 3.896888 CTCAAGAGGTCAGCTCCTATGAT 59.103 47.826 0.00 0.00 38.02 2.45
5623 6294 3.640498 TCAAGAGGTCAGCTCCTATGATG 59.360 47.826 0.00 0.00 38.02 3.07
5624 6295 3.609256 AGAGGTCAGCTCCTATGATGA 57.391 47.619 0.00 0.00 38.02 2.92
5625 6296 4.130719 AGAGGTCAGCTCCTATGATGAT 57.869 45.455 0.00 0.00 38.02 2.45
5626 6297 5.268131 AGAGGTCAGCTCCTATGATGATA 57.732 43.478 0.00 0.00 38.02 2.15
5627 6298 5.841209 AGAGGTCAGCTCCTATGATGATAT 58.159 41.667 0.00 0.00 38.02 1.63
5628 6299 5.893255 AGAGGTCAGCTCCTATGATGATATC 59.107 44.000 0.00 0.00 38.02 1.63
5629 6300 4.961730 AGGTCAGCTCCTATGATGATATCC 59.038 45.833 0.00 0.00 34.78 2.59
5630 6301 4.961730 GGTCAGCTCCTATGATGATATCCT 59.038 45.833 0.00 0.00 34.78 3.24
5631 6302 5.424895 GGTCAGCTCCTATGATGATATCCTT 59.575 44.000 0.00 0.00 34.78 3.36
5632 6303 6.070309 GGTCAGCTCCTATGATGATATCCTTT 60.070 42.308 0.00 0.00 34.78 3.11
5633 6304 7.124901 GGTCAGCTCCTATGATGATATCCTTTA 59.875 40.741 0.00 0.00 34.78 1.85
5634 6305 8.703743 GTCAGCTCCTATGATGATATCCTTTAT 58.296 37.037 0.00 0.00 34.78 1.40
5635 6306 9.942526 TCAGCTCCTATGATGATATCCTTTATA 57.057 33.333 0.00 0.00 0.00 0.98
5688 6377 3.979495 ACACGACAAGTTTGAGTATCGTC 59.021 43.478 5.59 0.00 40.56 4.20
5830 6603 4.083217 GGACGCCACAACAATAACACATAA 60.083 41.667 0.00 0.00 0.00 1.90
6249 7022 4.202121 TGGCTGTTCAAGGTACTATCGATC 60.202 45.833 0.00 0.00 38.49 3.69
6588 7362 8.750515 TGCTTATCATGGAAATTGTGAATCTA 57.249 30.769 0.00 0.00 0.00 1.98
6654 7428 0.034670 GCCAGATTGGTCTTCCAGCT 60.035 55.000 0.00 0.00 45.22 4.24
6663 7437 1.903183 GGTCTTCCAGCTTCCACTACT 59.097 52.381 0.00 0.00 0.00 2.57
6777 7551 4.261801 ACATTGGACAGGTATTTTCTCCG 58.738 43.478 0.00 0.00 0.00 4.63
6819 7593 5.295950 CACCATCATGAAGTATCCTCTGAC 58.704 45.833 0.00 0.00 0.00 3.51
6979 7753 5.687166 AGGAATTTTCTACGTGGATACCA 57.313 39.130 1.20 0.00 0.00 3.25
7218 7992 4.883585 GCATCACATGAAGTCATTAGGGAA 59.116 41.667 0.00 0.00 33.61 3.97
7304 8078 0.098376 GTAGGTGACACGGAGTAGCG 59.902 60.000 0.00 0.00 41.61 4.26
7335 8109 5.877012 TCAGAATACCAACATTCTCTTGAGC 59.123 40.000 0.00 0.00 42.14 4.26
7397 8171 9.806448 ATTGGCATTTCACCTTGTATATATGTA 57.194 29.630 0.00 0.00 0.00 2.29
7430 8204 2.817844 GGGGAAATGTAAACGCTGAAGT 59.182 45.455 0.00 0.00 0.00 3.01
7552 8326 3.555956 CGATGAAGCGGCTACTTTGTAAT 59.444 43.478 1.35 0.00 0.00 1.89
7553 8327 4.743151 CGATGAAGCGGCTACTTTGTAATA 59.257 41.667 1.35 0.00 0.00 0.98
7554 8328 5.233476 CGATGAAGCGGCTACTTTGTAATAA 59.767 40.000 1.35 0.00 0.00 1.40
7555 8329 6.237996 CGATGAAGCGGCTACTTTGTAATAAA 60.238 38.462 1.35 0.00 0.00 1.40
7556 8330 6.995511 TGAAGCGGCTACTTTGTAATAAAT 57.004 33.333 1.35 0.00 0.00 1.40
7580 8354 5.477984 TCAATAAAAGGCTGAAGCATGTCTT 59.522 36.000 4.43 0.00 44.36 3.01
7581 8355 3.655276 AAAAGGCTGAAGCATGTCTTG 57.345 42.857 4.43 0.00 44.36 3.02
7605 8379 9.474920 TTGCTGGTAAAAAGAAATAACAAGATG 57.525 29.630 0.00 0.00 0.00 2.90
7620 8394 0.253347 AGATGGTGAGATGTGGGGGT 60.253 55.000 0.00 0.00 0.00 4.95
7621 8395 0.107017 GATGGTGAGATGTGGGGGTG 60.107 60.000 0.00 0.00 0.00 4.61
7661 8435 7.069877 TGTTGTAACCTGTAATAGTCTTGGT 57.930 36.000 0.00 0.00 0.00 3.67
7677 8451 4.825085 GTCTTGGTGATGGTTCAAAGGTTA 59.175 41.667 0.00 0.00 32.48 2.85
7921 8699 7.315890 CACTTAAGAATTGGATTTCCCTGTTC 58.684 38.462 10.09 0.00 35.38 3.18
7943 8721 7.175641 TGTTCCTCTTCCTGAATCAAGATTTTC 59.824 37.037 0.00 0.00 0.00 2.29
8274 9253 3.930336 TGTCGAAGATTGATTCACTGCT 58.070 40.909 0.00 0.00 40.67 4.24
8277 9256 3.928992 TCGAAGATTGATTCACTGCTGAC 59.071 43.478 0.00 0.00 0.00 3.51
8278 9257 3.931468 CGAAGATTGATTCACTGCTGACT 59.069 43.478 0.00 0.00 0.00 3.41
8341 11301 1.993370 GTGGTGTTCGAAAGGATCTCG 59.007 52.381 0.00 0.00 37.66 4.04
8342 11302 1.616865 TGGTGTTCGAAAGGATCTCGT 59.383 47.619 0.00 0.00 37.56 4.18
8423 11384 4.396790 TCCCTACGTGAATTGGCATTTTAC 59.603 41.667 0.00 6.89 0.00 2.01
8431 11392 7.328249 ACGTGAATTGGCATTTTACAAAGTATG 59.672 33.333 14.66 2.65 0.00 2.39
8464 11439 5.525378 CCATAGAAAGTTAGGTCACATCAGC 59.475 44.000 0.00 0.00 0.00 4.26
8465 11440 4.623932 AGAAAGTTAGGTCACATCAGCA 57.376 40.909 0.00 0.00 0.00 4.41
8469 11444 4.065321 AGTTAGGTCACATCAGCATAGC 57.935 45.455 0.00 0.00 0.00 2.97
8473 11448 1.139654 GGTCACATCAGCATAGCCTCA 59.860 52.381 0.00 0.00 0.00 3.86
8474 11449 2.224475 GGTCACATCAGCATAGCCTCAT 60.224 50.000 0.00 0.00 0.00 2.90
8483 11458 3.323115 CAGCATAGCCTCATAGAAGGTGA 59.677 47.826 0.00 0.00 38.79 4.02
8532 11507 4.595781 TCTTTACACATGTTGACCCCTACT 59.404 41.667 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.039159 GGACTTCATTGAAATCCTCCATTCTC 59.961 42.308 17.51 0.00 0.00 2.87
26 27 7.610865 TGTTTATTGGGGACTTCATTGAAATC 58.389 34.615 0.00 0.00 0.00 2.17
33 34 7.364673 GCCTTAATTGTTTATTGGGGACTTCAT 60.365 37.037 0.00 0.00 0.00 2.57
62 63 0.111061 AGCTGAAAGTGCCACATGGA 59.889 50.000 0.87 0.00 34.28 3.41
71 72 5.177511 TGAAAACGTATGAGAGCTGAAAGTG 59.822 40.000 0.00 0.00 35.30 3.16
73 74 5.845985 TGAAAACGTATGAGAGCTGAAAG 57.154 39.130 0.00 0.00 0.00 2.62
110 111 1.302511 GAGAGTTCGGCTGCCCAAA 60.303 57.895 14.12 5.00 0.00 3.28
111 112 0.902984 TAGAGAGTTCGGCTGCCCAA 60.903 55.000 14.12 3.24 0.00 4.12
112 113 0.687757 ATAGAGAGTTCGGCTGCCCA 60.688 55.000 14.12 0.00 0.00 5.36
113 114 1.000052 GTATAGAGAGTTCGGCTGCCC 60.000 57.143 14.12 0.00 0.00 5.36
114 115 1.681793 TGTATAGAGAGTTCGGCTGCC 59.318 52.381 9.11 9.11 0.00 4.85
116 117 4.082679 GGGTATGTATAGAGAGTTCGGCTG 60.083 50.000 0.00 0.00 0.00 4.85
117 118 4.080687 GGGTATGTATAGAGAGTTCGGCT 58.919 47.826 0.00 0.00 0.00 5.52
118 119 3.825014 TGGGTATGTATAGAGAGTTCGGC 59.175 47.826 0.00 0.00 0.00 5.54
119 120 4.825634 TGTGGGTATGTATAGAGAGTTCGG 59.174 45.833 0.00 0.00 0.00 4.30
120 121 6.387041 TTGTGGGTATGTATAGAGAGTTCG 57.613 41.667 0.00 0.00 0.00 3.95
124 125 5.983720 CCGTTTTGTGGGTATGTATAGAGAG 59.016 44.000 0.00 0.00 0.00 3.20
154 155 9.855361 GAATTGATCACGTAAGATGTTGATAAG 57.145 33.333 0.00 0.00 43.62 1.73
183 184 1.274798 GCGTTTTGTGGGAATGTGCG 61.275 55.000 0.00 0.00 0.00 5.34
185 186 0.387202 TGGCGTTTTGTGGGAATGTG 59.613 50.000 0.00 0.00 0.00 3.21
192 193 3.253677 TGGTAAGTTATGGCGTTTTGTGG 59.746 43.478 0.00 0.00 0.00 4.17
200 201 4.035208 GGAAGATGTTGGTAAGTTATGGCG 59.965 45.833 0.00 0.00 0.00 5.69
202 203 6.828273 TCATGGAAGATGTTGGTAAGTTATGG 59.172 38.462 0.00 0.00 0.00 2.74
203 204 7.864108 TCATGGAAGATGTTGGTAAGTTATG 57.136 36.000 0.00 0.00 0.00 1.90
204 205 7.721399 GGATCATGGAAGATGTTGGTAAGTTAT 59.279 37.037 0.00 0.00 0.00 1.89
205 206 7.054124 GGATCATGGAAGATGTTGGTAAGTTA 58.946 38.462 0.00 0.00 0.00 2.24
206 207 5.888161 GGATCATGGAAGATGTTGGTAAGTT 59.112 40.000 0.00 0.00 0.00 2.66
207 208 5.440610 GGATCATGGAAGATGTTGGTAAGT 58.559 41.667 0.00 0.00 0.00 2.24
208 209 4.823989 GGGATCATGGAAGATGTTGGTAAG 59.176 45.833 0.00 0.00 0.00 2.34
209 210 4.478317 AGGGATCATGGAAGATGTTGGTAA 59.522 41.667 0.00 0.00 0.00 2.85
210 211 4.047166 AGGGATCATGGAAGATGTTGGTA 58.953 43.478 0.00 0.00 0.00 3.25
211 212 2.854967 AGGGATCATGGAAGATGTTGGT 59.145 45.455 0.00 0.00 0.00 3.67
212 213 3.589951 AGGGATCATGGAAGATGTTGG 57.410 47.619 0.00 0.00 0.00 3.77
213 214 5.628130 ACATAGGGATCATGGAAGATGTTG 58.372 41.667 0.00 0.00 0.00 3.33
214 215 5.370584 TGACATAGGGATCATGGAAGATGTT 59.629 40.000 0.00 0.00 0.00 2.71
215 216 4.909695 TGACATAGGGATCATGGAAGATGT 59.090 41.667 0.00 0.00 0.00 3.06
216 217 5.494390 TGACATAGGGATCATGGAAGATG 57.506 43.478 0.00 0.00 0.00 2.90
217 218 6.715350 ATTGACATAGGGATCATGGAAGAT 57.285 37.500 0.00 0.00 0.00 2.40
218 219 6.295292 CGTATTGACATAGGGATCATGGAAGA 60.295 42.308 0.00 0.00 0.00 2.87
219 220 5.871524 CGTATTGACATAGGGATCATGGAAG 59.128 44.000 0.00 0.00 0.00 3.46
220 221 5.306937 ACGTATTGACATAGGGATCATGGAA 59.693 40.000 0.00 0.00 0.00 3.53
221 222 4.838423 ACGTATTGACATAGGGATCATGGA 59.162 41.667 0.00 0.00 0.00 3.41
222 223 5.152623 ACGTATTGACATAGGGATCATGG 57.847 43.478 0.00 0.00 0.00 3.66
223 224 4.859245 CGACGTATTGACATAGGGATCATG 59.141 45.833 0.00 0.00 0.00 3.07
224 225 4.618460 GCGACGTATTGACATAGGGATCAT 60.618 45.833 0.00 0.00 0.00 2.45
225 226 3.305131 GCGACGTATTGACATAGGGATCA 60.305 47.826 0.00 0.00 0.00 2.92
226 227 3.243336 GCGACGTATTGACATAGGGATC 58.757 50.000 0.00 0.00 0.00 3.36
227 228 2.351447 CGCGACGTATTGACATAGGGAT 60.351 50.000 0.00 0.00 0.00 3.85
228 229 1.002142 CGCGACGTATTGACATAGGGA 60.002 52.381 0.00 0.00 0.00 4.20
229 230 1.268896 ACGCGACGTATTGACATAGGG 60.269 52.381 15.93 0.00 38.73 3.53
230 231 1.779157 CACGCGACGTATTGACATAGG 59.221 52.381 15.93 0.00 38.32 2.57
231 232 2.447250 ACACGCGACGTATTGACATAG 58.553 47.619 15.93 0.00 38.32 2.23
232 233 2.547913 ACACGCGACGTATTGACATA 57.452 45.000 15.93 0.00 38.32 2.29
233 234 2.547913 TACACGCGACGTATTGACAT 57.452 45.000 15.93 0.00 38.32 3.06
234 235 2.547913 ATACACGCGACGTATTGACA 57.452 45.000 15.93 0.00 38.32 3.58
235 236 2.715997 GGTATACACGCGACGTATTGAC 59.284 50.000 23.68 18.09 38.32 3.18
236 237 2.613595 AGGTATACACGCGACGTATTGA 59.386 45.455 23.68 10.16 38.32 2.57
237 238 2.990941 AGGTATACACGCGACGTATTG 58.009 47.619 23.68 10.29 38.32 1.90
238 239 3.559655 TGTAGGTATACACGCGACGTATT 59.440 43.478 23.68 13.18 38.32 1.89
239 240 3.130633 TGTAGGTATACACGCGACGTAT 58.869 45.455 15.93 20.54 38.32 3.06
240 241 2.545731 TGTAGGTATACACGCGACGTA 58.454 47.619 15.93 14.57 38.32 3.57
241 242 1.368641 TGTAGGTATACACGCGACGT 58.631 50.000 15.93 12.54 42.36 4.34
242 243 2.456942 TTGTAGGTATACACGCGACG 57.543 50.000 15.93 5.81 41.62 5.12
243 244 4.549489 GCATTTTGTAGGTATACACGCGAC 60.549 45.833 15.93 0.00 41.62 5.19
244 245 3.552699 GCATTTTGTAGGTATACACGCGA 59.447 43.478 15.93 0.00 41.62 5.87
245 246 3.302870 GGCATTTTGTAGGTATACACGCG 60.303 47.826 3.53 3.53 41.62 6.01
246 247 3.623960 TGGCATTTTGTAGGTATACACGC 59.376 43.478 5.01 0.00 41.62 5.34
247 248 6.073440 GGTATGGCATTTTGTAGGTATACACG 60.073 42.308 4.78 0.00 41.62 4.49
248 249 6.996282 AGGTATGGCATTTTGTAGGTATACAC 59.004 38.462 4.78 0.00 41.62 2.90
249 250 7.144234 AGGTATGGCATTTTGTAGGTATACA 57.856 36.000 4.78 0.00 40.18 2.29
250 251 9.734984 ATAAGGTATGGCATTTTGTAGGTATAC 57.265 33.333 4.78 0.00 0.00 1.47
251 252 9.953565 GATAAGGTATGGCATTTTGTAGGTATA 57.046 33.333 4.78 0.00 0.00 1.47
252 253 8.444783 TGATAAGGTATGGCATTTTGTAGGTAT 58.555 33.333 4.78 0.00 0.00 2.73
253 254 7.807198 TGATAAGGTATGGCATTTTGTAGGTA 58.193 34.615 4.78 0.00 0.00 3.08
254 255 6.668645 TGATAAGGTATGGCATTTTGTAGGT 58.331 36.000 4.78 0.00 0.00 3.08
255 256 7.068103 TGTTGATAAGGTATGGCATTTTGTAGG 59.932 37.037 4.78 0.00 0.00 3.18
256 257 7.995289 TGTTGATAAGGTATGGCATTTTGTAG 58.005 34.615 4.78 0.00 0.00 2.74
257 258 7.946381 TGTTGATAAGGTATGGCATTTTGTA 57.054 32.000 4.78 0.00 0.00 2.41
258 259 6.849085 TGTTGATAAGGTATGGCATTTTGT 57.151 33.333 4.78 0.00 0.00 2.83
259 260 7.719483 AGATGTTGATAAGGTATGGCATTTTG 58.281 34.615 4.78 0.00 0.00 2.44
260 261 7.902920 AGATGTTGATAAGGTATGGCATTTT 57.097 32.000 4.78 0.99 0.00 1.82
261 262 7.014615 GGAAGATGTTGATAAGGTATGGCATTT 59.985 37.037 4.78 0.00 0.00 2.32
262 263 6.491403 GGAAGATGTTGATAAGGTATGGCATT 59.509 38.462 4.78 0.00 0.00 3.56
263 264 6.006449 GGAAGATGTTGATAAGGTATGGCAT 58.994 40.000 4.88 4.88 0.00 4.40
264 265 5.376625 GGAAGATGTTGATAAGGTATGGCA 58.623 41.667 0.00 0.00 0.00 4.92
265 266 4.452455 CGGAAGATGTTGATAAGGTATGGC 59.548 45.833 0.00 0.00 0.00 4.40
266 267 5.466728 CACGGAAGATGTTGATAAGGTATGG 59.533 44.000 0.00 0.00 0.00 2.74
272 273 5.359756 TGGATCACGGAAGATGTTGATAAG 58.640 41.667 0.00 0.00 0.00 1.73
287 288 4.302455 GAGTGTATGGAGAATGGATCACG 58.698 47.826 0.00 0.00 0.00 4.35
288 289 4.503991 GGGAGTGTATGGAGAATGGATCAC 60.504 50.000 0.00 0.00 0.00 3.06
293 294 2.505407 TGTGGGAGTGTATGGAGAATGG 59.495 50.000 0.00 0.00 0.00 3.16
351 353 3.065655 CGTTTTGTGGGTATGTACGGAA 58.934 45.455 0.00 0.00 0.00 4.30
404 406 2.543777 TAGTCCCGCCTTATTGATGC 57.456 50.000 0.00 0.00 0.00 3.91
405 407 4.003648 GGATTAGTCCCGCCTTATTGATG 58.996 47.826 0.00 0.00 38.69 3.07
411 413 4.019681 CCATTATGGATTAGTCCCGCCTTA 60.020 45.833 5.05 0.00 44.41 2.69
455 458 0.179140 CGGGCCATGTGTAAACATGC 60.179 55.000 19.12 14.20 44.39 4.06
464 467 4.758251 TGAGACGCGGGCCATGTG 62.758 66.667 12.47 5.53 0.00 3.21
475 478 4.494690 GGTTGCATGTCATACATTGAGACG 60.495 45.833 0.00 0.00 36.53 4.18
480 483 8.067780 CAATATTGGTTGCATGTCATACATTG 57.932 34.615 7.62 0.00 36.53 2.82
591 608 3.745458 GGAGGCATTTCAAATGCGAAAAA 59.255 39.130 25.31 0.00 45.41 1.94
592 609 3.244009 TGGAGGCATTTCAAATGCGAAAA 60.244 39.130 25.31 11.10 45.41 2.29
593 610 2.298446 TGGAGGCATTTCAAATGCGAAA 59.702 40.909 25.31 10.77 45.41 3.46
594 611 1.891811 TGGAGGCATTTCAAATGCGAA 59.108 42.857 25.31 10.46 45.41 4.70
595 612 1.543607 TGGAGGCATTTCAAATGCGA 58.456 45.000 25.31 9.29 45.41 5.10
596 613 2.198406 CATGGAGGCATTTCAAATGCG 58.802 47.619 25.31 9.55 45.41 4.73
597 614 2.168936 TCCATGGAGGCATTTCAAATGC 59.831 45.455 24.58 24.58 43.85 3.56
610 627 0.110104 GGATCTTGGGCTCCATGGAG 59.890 60.000 33.73 33.73 44.56 3.86
667 688 1.075601 TCTCCTGCCCAAAGGAATGT 58.924 50.000 0.00 0.00 45.81 2.71
695 797 1.477553 GATTTGGATGCCAGGCAAGA 58.522 50.000 20.84 1.70 43.62 3.02
707 809 4.072052 TGGGATTTGGATTGGATTTGGA 57.928 40.909 0.00 0.00 0.00 3.53
877 988 2.411765 CTTTGCGGGGAAGTGGGAGT 62.412 60.000 0.00 0.00 0.00 3.85
880 991 1.971695 GACTTTGCGGGGAAGTGGG 60.972 63.158 0.00 0.00 37.46 4.61
1155 1293 0.891373 TCAGAAGGAGAGAAGCGGTG 59.109 55.000 0.00 0.00 0.00 4.94
1156 1294 1.633774 TTCAGAAGGAGAGAAGCGGT 58.366 50.000 0.00 0.00 0.00 5.68
1158 1296 3.305629 CGAAATTCAGAAGGAGAGAAGCG 59.694 47.826 0.00 0.00 0.00 4.68
1165 1303 3.182967 CGAGGACGAAATTCAGAAGGAG 58.817 50.000 0.00 0.00 42.66 3.69
1166 1304 2.561419 ACGAGGACGAAATTCAGAAGGA 59.439 45.455 0.00 0.00 42.66 3.36
1167 1305 2.668457 CACGAGGACGAAATTCAGAAGG 59.332 50.000 0.00 0.00 42.66 3.46
1168 1306 2.668457 CCACGAGGACGAAATTCAGAAG 59.332 50.000 0.00 0.00 42.66 2.85
1170 1308 1.616865 ACCACGAGGACGAAATTCAGA 59.383 47.619 5.68 0.00 42.66 3.27
1171 1309 1.993370 GACCACGAGGACGAAATTCAG 59.007 52.381 5.68 0.00 42.66 3.02
1172 1310 2.074547 GACCACGAGGACGAAATTCA 57.925 50.000 5.68 0.00 42.66 2.57
1181 1319 0.892358 AGCAGTAACGACCACGAGGA 60.892 55.000 5.68 0.00 42.66 3.71
1183 1321 1.344942 GCAGCAGTAACGACCACGAG 61.345 60.000 0.00 0.00 42.66 4.18
1184 1322 1.372499 GCAGCAGTAACGACCACGA 60.372 57.895 0.00 0.00 42.66 4.35
1185 1323 1.372997 AGCAGCAGTAACGACCACG 60.373 57.895 0.00 0.00 45.75 4.94
1186 1324 1.901650 GCAGCAGCAGTAACGACCAC 61.902 60.000 0.00 0.00 41.58 4.16
1187 1325 1.667830 GCAGCAGCAGTAACGACCA 60.668 57.895 0.00 0.00 41.58 4.02
1188 1326 2.391389 GGCAGCAGCAGTAACGACC 61.391 63.158 2.65 0.00 44.61 4.79
1189 1327 2.730672 CGGCAGCAGCAGTAACGAC 61.731 63.158 2.65 0.00 44.61 4.34
1190 1328 2.432456 CGGCAGCAGCAGTAACGA 60.432 61.111 2.65 0.00 44.61 3.85
1374 1535 2.177654 GAACCAACGAATTCGGCGCA 62.178 55.000 29.79 0.00 44.95 6.09
1385 1546 0.955919 GGGCCAGAGAAGAACCAACG 60.956 60.000 4.39 0.00 0.00 4.10
1390 1551 1.821136 CCAAATGGGCCAGAGAAGAAC 59.179 52.381 13.78 0.00 0.00 3.01
1584 1747 5.973124 AGATTCCCCTCTTCCTAAAATGAGA 59.027 40.000 0.00 0.00 0.00 3.27
1585 1748 6.259346 AGATTCCCCTCTTCCTAAAATGAG 57.741 41.667 0.00 0.00 0.00 2.90
1586 1749 7.139619 TCTAGATTCCCCTCTTCCTAAAATGA 58.860 38.462 0.00 0.00 0.00 2.57
1587 1750 7.380423 TCTAGATTCCCCTCTTCCTAAAATG 57.620 40.000 0.00 0.00 0.00 2.32
1633 1796 0.456653 GAGCGATTGCAAATGCCGTT 60.457 50.000 19.13 11.43 46.23 4.44
1829 1994 6.680810 TCAGTGTCATATTTTCTTTGCTTGG 58.319 36.000 0.00 0.00 0.00 3.61
1937 2165 3.495001 GCTAACTGCGTAAATGATCTCCC 59.505 47.826 0.00 0.00 0.00 4.30
1950 2178 1.512926 ACTTCCAAGTGCTAACTGCG 58.487 50.000 0.00 0.00 46.63 5.18
1988 2216 4.355543 AAAGCATGCCATACAAGTTACG 57.644 40.909 15.66 0.00 0.00 3.18
2001 2229 4.572795 GGTAAGAGAAGAGGTAAAGCATGC 59.427 45.833 10.51 10.51 0.00 4.06
2068 2296 3.610040 ATCGCATGTAACTGTCCAAGA 57.390 42.857 0.00 0.00 0.00 3.02
2085 2313 4.518217 GATGTTGATAGCGAACCAAATCG 58.482 43.478 0.00 0.00 45.41 3.34
2926 3594 6.382859 TCCACCTCAGATAAAACATACTGCTA 59.617 38.462 0.00 0.00 0.00 3.49
2927 3595 5.189736 TCCACCTCAGATAAAACATACTGCT 59.810 40.000 0.00 0.00 0.00 4.24
2928 3596 5.428253 TCCACCTCAGATAAAACATACTGC 58.572 41.667 0.00 0.00 0.00 4.40
2929 3597 7.554118 ACAATCCACCTCAGATAAAACATACTG 59.446 37.037 0.00 0.00 0.00 2.74
2930 3598 7.633789 ACAATCCACCTCAGATAAAACATACT 58.366 34.615 0.00 0.00 0.00 2.12
2931 3599 7.865706 ACAATCCACCTCAGATAAAACATAC 57.134 36.000 0.00 0.00 0.00 2.39
2932 3600 9.967451 TTTACAATCCACCTCAGATAAAACATA 57.033 29.630 0.00 0.00 0.00 2.29
2933 3601 8.877864 TTTACAATCCACCTCAGATAAAACAT 57.122 30.769 0.00 0.00 0.00 2.71
2934 3602 8.698973 TTTTACAATCCACCTCAGATAAAACA 57.301 30.769 0.00 0.00 0.00 2.83
2937 3605 9.120538 GCTATTTTACAATCCACCTCAGATAAA 57.879 33.333 0.00 0.00 0.00 1.40
2938 3606 8.494433 AGCTATTTTACAATCCACCTCAGATAA 58.506 33.333 0.00 0.00 0.00 1.75
2939 3607 8.034313 AGCTATTTTACAATCCACCTCAGATA 57.966 34.615 0.00 0.00 0.00 1.98
2940 3608 6.904626 AGCTATTTTACAATCCACCTCAGAT 58.095 36.000 0.00 0.00 0.00 2.90
2941 3609 6.313519 AGCTATTTTACAATCCACCTCAGA 57.686 37.500 0.00 0.00 0.00 3.27
2942 3610 6.599244 TCAAGCTATTTTACAATCCACCTCAG 59.401 38.462 0.00 0.00 0.00 3.35
2943 3611 6.374333 GTCAAGCTATTTTACAATCCACCTCA 59.626 38.462 0.00 0.00 0.00 3.86
2944 3612 6.183360 GGTCAAGCTATTTTACAATCCACCTC 60.183 42.308 0.00 0.00 0.00 3.85
2945 3613 5.652452 GGTCAAGCTATTTTACAATCCACCT 59.348 40.000 0.00 0.00 0.00 4.00
2946 3614 5.417580 TGGTCAAGCTATTTTACAATCCACC 59.582 40.000 0.00 0.00 0.00 4.61
2947 3615 6.374333 TCTGGTCAAGCTATTTTACAATCCAC 59.626 38.462 0.00 0.00 0.00 4.02
2948 3616 6.480763 TCTGGTCAAGCTATTTTACAATCCA 58.519 36.000 0.00 0.00 0.00 3.41
2949 3617 7.391148 TTCTGGTCAAGCTATTTTACAATCC 57.609 36.000 0.00 0.00 0.00 3.01
2950 3618 7.852945 CGATTCTGGTCAAGCTATTTTACAATC 59.147 37.037 0.00 0.00 0.00 2.67
2951 3619 7.552687 TCGATTCTGGTCAAGCTATTTTACAAT 59.447 33.333 0.00 0.00 0.00 2.71
2952 3620 6.876789 TCGATTCTGGTCAAGCTATTTTACAA 59.123 34.615 0.00 0.00 0.00 2.41
2953 3621 6.403049 TCGATTCTGGTCAAGCTATTTTACA 58.597 36.000 0.00 0.00 0.00 2.41
2954 3622 6.903883 TCGATTCTGGTCAAGCTATTTTAC 57.096 37.500 0.00 0.00 0.00 2.01
2955 3623 7.552687 ACAATCGATTCTGGTCAAGCTATTTTA 59.447 33.333 7.92 0.00 0.00 1.52
2978 3646 4.098349 GCCTGCAAATGATCTCCATTACAA 59.902 41.667 0.00 0.00 44.28 2.41
3092 3760 5.890334 TGTAACAAAAAGTTTGCTCCAGAG 58.110 37.500 0.68 0.00 41.64 3.35
3131 3799 6.139671 AGAAGGTATGTGGTATGATGAGAGT 58.860 40.000 0.00 0.00 0.00 3.24
3304 3972 2.787249 CGCCAGGAACATTCTGCG 59.213 61.111 0.00 8.50 35.06 5.18
3614 4282 6.949578 ATTTATGATGCAAAAGGAAACACG 57.050 33.333 0.00 0.00 0.00 4.49
3785 4453 2.121963 AGGGCAAGGAGGGTGACA 60.122 61.111 0.00 0.00 0.00 3.58
3801 4469 6.365839 CAAGTACATAGAACTGCAACAACAG 58.634 40.000 0.00 0.00 43.59 3.16
3883 4552 6.070251 TCCTAGCAAATATTCAAGTCTGACCA 60.070 38.462 3.76 0.00 0.00 4.02
3884 4553 6.349300 TCCTAGCAAATATTCAAGTCTGACC 58.651 40.000 3.76 0.00 0.00 4.02
3909 4578 6.147985 GCTCCCCTTCGAAACTATCAATATTC 59.852 42.308 0.00 0.00 0.00 1.75
3910 4579 5.998363 GCTCCCCTTCGAAACTATCAATATT 59.002 40.000 0.00 0.00 0.00 1.28
3911 4580 5.513267 GGCTCCCCTTCGAAACTATCAATAT 60.513 44.000 0.00 0.00 0.00 1.28
3912 4581 4.202326 GGCTCCCCTTCGAAACTATCAATA 60.202 45.833 0.00 0.00 0.00 1.90
3913 4582 3.433740 GGCTCCCCTTCGAAACTATCAAT 60.434 47.826 0.00 0.00 0.00 2.57
3914 4583 2.093128 GGCTCCCCTTCGAAACTATCAA 60.093 50.000 0.00 0.00 0.00 2.57
3915 4584 1.485066 GGCTCCCCTTCGAAACTATCA 59.515 52.381 0.00 0.00 0.00 2.15
3916 4585 1.763545 AGGCTCCCCTTCGAAACTATC 59.236 52.381 0.00 0.00 38.74 2.08
3917 4586 1.880941 AGGCTCCCCTTCGAAACTAT 58.119 50.000 0.00 0.00 38.74 2.12
3918 4587 3.393854 AGGCTCCCCTTCGAAACTA 57.606 52.632 0.00 0.00 38.74 2.24
3919 4588 4.234673 AGGCTCCCCTTCGAAACT 57.765 55.556 0.00 0.00 38.74 2.66
3931 4600 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3932 4601 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3933 4602 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3934 4603 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3935 4604 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3936 4605 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3937 4606 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3938 4607 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3942 4611 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3943 4612 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3944 4613 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3945 4614 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3946 4615 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3947 4616 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3948 4617 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3949 4618 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3950 4619 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3951 4620 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3952 4621 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3953 4622 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3954 4623 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3955 4624 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3956 4625 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3957 4626 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3968 4637 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3969 4638 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3970 4639 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3971 4640 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3972 4641 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3973 4642 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3974 4643 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3975 4644 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3976 4645 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3977 4646 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3978 4647 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3979 4648 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3980 4649 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3981 4650 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3982 4651 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3983 4652 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3984 4653 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3985 4654 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3986 4655 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
3987 4656 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
3988 4657 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
3989 4658 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
3990 4659 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
3991 4660 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
3992 4661 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
4002 4671 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
4003 4672 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
4004 4673 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
4005 4674 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
4006 4675 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
4007 4676 3.441572 CACAGCCTTTCCCTACATTTCTG 59.558 47.826 0.00 0.00 0.00 3.02
4008 4677 3.074538 ACACAGCCTTTCCCTACATTTCT 59.925 43.478 0.00 0.00 0.00 2.52
4009 4678 3.421844 ACACAGCCTTTCCCTACATTTC 58.578 45.455 0.00 0.00 0.00 2.17
4010 4679 3.525800 ACACAGCCTTTCCCTACATTT 57.474 42.857 0.00 0.00 0.00 2.32
4011 4680 3.329520 TGTACACAGCCTTTCCCTACATT 59.670 43.478 0.00 0.00 0.00 2.71
4012 4681 2.910319 TGTACACAGCCTTTCCCTACAT 59.090 45.455 0.00 0.00 0.00 2.29
4013 4682 2.331166 TGTACACAGCCTTTCCCTACA 58.669 47.619 0.00 0.00 0.00 2.74
4014 4683 3.412237 TTGTACACAGCCTTTCCCTAC 57.588 47.619 0.00 0.00 0.00 3.18
4015 4684 5.027460 TCTATTGTACACAGCCTTTCCCTA 58.973 41.667 0.00 0.00 0.00 3.53
4016 4685 3.844211 TCTATTGTACACAGCCTTTCCCT 59.156 43.478 0.00 0.00 0.00 4.20
4017 4686 3.939592 GTCTATTGTACACAGCCTTTCCC 59.060 47.826 0.00 0.00 0.00 3.97
4018 4687 3.939592 GGTCTATTGTACACAGCCTTTCC 59.060 47.826 0.00 0.00 0.00 3.13
4019 4688 3.939592 GGGTCTATTGTACACAGCCTTTC 59.060 47.826 0.00 0.00 0.00 2.62
4020 4689 3.329520 TGGGTCTATTGTACACAGCCTTT 59.670 43.478 0.00 0.00 0.00 3.11
4021 4690 2.910319 TGGGTCTATTGTACACAGCCTT 59.090 45.455 0.00 0.00 0.00 4.35
4022 4691 2.546899 TGGGTCTATTGTACACAGCCT 58.453 47.619 0.00 0.00 0.00 4.58
4023 4692 3.343941 TTGGGTCTATTGTACACAGCC 57.656 47.619 0.00 0.00 30.52 4.85
4024 4693 4.154195 CACTTTGGGTCTATTGTACACAGC 59.846 45.833 0.00 0.00 30.52 4.40
4025 4694 4.695455 CCACTTTGGGTCTATTGTACACAG 59.305 45.833 0.00 0.00 30.52 3.66
4026 4695 4.103469 ACCACTTTGGGTCTATTGTACACA 59.897 41.667 0.00 0.00 43.37 3.72
4027 4696 4.648651 ACCACTTTGGGTCTATTGTACAC 58.351 43.478 0.00 0.00 43.37 2.90
4028 4697 4.986054 ACCACTTTGGGTCTATTGTACA 57.014 40.909 0.00 0.00 43.37 2.90
4038 4707 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
4039 4708 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
4040 4709 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4041 4710 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4042 4711 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4043 4712 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4044 4713 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4045 4714 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
4046 4715 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
4047 4716 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
4048 4717 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
4049 4718 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
4050 4719 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
4051 4720 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
4052 4721 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
4053 4722 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
4054 4723 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
4055 4724 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
4056 4725 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
4068 4737 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4071 4740 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
4072 4741 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
4073 4742 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
4074 4743 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4076 4745 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
4077 4746 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
4078 4747 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
4079 4748 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
4080 4749 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
4081 4750 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
4082 4751 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
4083 4752 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
4084 4753 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
4095 4764 4.649218 TCAATATTCTAAAAAGGGCAGCCC 59.351 41.667 24.90 24.90 45.90 5.19
4096 4765 5.852282 TCAATATTCTAAAAAGGGCAGCC 57.148 39.130 1.26 1.26 0.00 4.85
4097 4766 8.171164 ACTATCAATATTCTAAAAAGGGCAGC 57.829 34.615 0.00 0.00 0.00 5.25
4109 4778 8.910944 AGCAAGCAATGAAACTATCAATATTCT 58.089 29.630 0.00 0.00 42.54 2.40
4138 4807 2.666508 CCACCAAGTCGTAACAGAATCG 59.333 50.000 0.00 0.00 0.00 3.34
4841 5511 3.615224 TCGGTGAAAGTACCCCATAAC 57.385 47.619 0.00 0.00 37.44 1.89
4885 5555 5.519808 TCTTCAGTCCTTTCTATAGCAGGA 58.480 41.667 13.84 13.84 34.10 3.86
4899 5569 1.374758 CCACACGGCTCTTCAGTCC 60.375 63.158 0.00 0.00 0.00 3.85
4921 5591 3.195182 TGGAGAAGATGAAGCAGACTGAG 59.805 47.826 6.65 0.00 0.00 3.35
4954 5624 3.565617 AATGCCCCCATAAATGCCTAT 57.434 42.857 0.00 0.00 0.00 2.57
5411 6082 7.500992 AGAGTAGAAACATTCAGTGAGAAACA 58.499 34.615 0.00 0.00 40.22 2.83
5635 6306 8.575589 TGTAGTGTGCAAGAAAATGATAAACAT 58.424 29.630 0.00 0.00 41.45 2.71
5636 6307 7.935520 TGTAGTGTGCAAGAAAATGATAAACA 58.064 30.769 0.00 0.00 0.00 2.83
5637 6308 8.795786 TTGTAGTGTGCAAGAAAATGATAAAC 57.204 30.769 0.00 0.00 0.00 2.01
5638 6309 8.845227 TCTTGTAGTGTGCAAGAAAATGATAAA 58.155 29.630 5.14 0.00 46.21 1.40
5639 6310 8.389779 TCTTGTAGTGTGCAAGAAAATGATAA 57.610 30.769 5.14 0.00 46.21 1.75
5740 6429 7.505585 ACTTCTGATTTACTTGAAAATGGGTGA 59.494 33.333 0.00 0.00 0.00 4.02
5853 6626 1.328680 CTGCATCGTGCCTATTCACAC 59.671 52.381 7.38 0.00 44.23 3.82
6249 7022 7.383572 CCTACATCTTATAAGCACACAAGCTAG 59.616 40.741 7.67 0.00 45.89 3.42
6308 7081 5.869649 AACTACAAGCCACAAGGAAATTT 57.130 34.783 0.00 0.00 36.89 1.82
6588 7362 1.002430 ACTGATCGCCTTGTGTGTCAT 59.998 47.619 0.00 0.00 0.00 3.06
6592 7366 1.328680 GCATACTGATCGCCTTGTGTG 59.671 52.381 0.00 0.00 0.00 3.82
6633 7407 0.036010 CTGGAAGACCAATCTGGCGT 60.036 55.000 0.00 0.00 46.32 5.68
6654 7428 0.397941 AGCTTGCTGCAGTAGTGGAA 59.602 50.000 16.64 0.00 45.94 3.53
6663 7437 1.481772 ACTTTTCCAAAGCTTGCTGCA 59.518 42.857 0.00 0.00 45.94 4.41
6777 7551 3.826729 GGTGCCTGGTAATTCCAATATCC 59.173 47.826 0.00 0.00 46.59 2.59
7012 7786 2.392662 TCTCCTGTTCCTGGATAGCAG 58.607 52.381 13.26 13.26 31.33 4.24
7150 7924 5.425217 TCTCATAACTCCAGAATGCACCTAA 59.575 40.000 0.00 0.00 31.97 2.69
7304 8078 9.995003 AGAGAATGTTGGTATTCTGATTAGATC 57.005 33.333 5.80 0.00 45.00 2.75
7335 8109 3.070018 GTCTGAGGTTGACAATGGACTG 58.930 50.000 0.00 0.00 34.80 3.51
7417 8191 2.223377 CCACCTCAACTTCAGCGTTTAC 59.777 50.000 0.00 0.00 0.00 2.01
7418 8192 2.103432 TCCACCTCAACTTCAGCGTTTA 59.897 45.455 0.00 0.00 0.00 2.01
7421 8195 0.034059 CTCCACCTCAACTTCAGCGT 59.966 55.000 0.00 0.00 0.00 5.07
7430 8204 2.947532 CGCAGCCTCTCCACCTCAA 61.948 63.158 0.00 0.00 0.00 3.02
7552 8326 7.839907 ACATGCTTCAGCCTTTTATTGATTTA 58.160 30.769 0.00 0.00 41.18 1.40
7553 8327 6.704310 ACATGCTTCAGCCTTTTATTGATTT 58.296 32.000 0.00 0.00 41.18 2.17
7554 8328 6.154021 AGACATGCTTCAGCCTTTTATTGATT 59.846 34.615 0.00 0.00 41.18 2.57
7555 8329 5.655532 AGACATGCTTCAGCCTTTTATTGAT 59.344 36.000 0.00 0.00 41.18 2.57
7556 8330 5.012239 AGACATGCTTCAGCCTTTTATTGA 58.988 37.500 0.00 0.00 41.18 2.57
7580 8354 8.087750 CCATCTTGTTATTTCTTTTTACCAGCA 58.912 33.333 0.00 0.00 0.00 4.41
7581 8355 8.088365 ACCATCTTGTTATTTCTTTTTACCAGC 58.912 33.333 0.00 0.00 0.00 4.85
7582 8356 9.410556 CACCATCTTGTTATTTCTTTTTACCAG 57.589 33.333 0.00 0.00 0.00 4.00
7589 8363 8.517878 CACATCTCACCATCTTGTTATTTCTTT 58.482 33.333 0.00 0.00 0.00 2.52
7590 8364 7.121759 CCACATCTCACCATCTTGTTATTTCTT 59.878 37.037 0.00 0.00 0.00 2.52
7591 8365 6.600822 CCACATCTCACCATCTTGTTATTTCT 59.399 38.462 0.00 0.00 0.00 2.52
7592 8366 6.183360 CCCACATCTCACCATCTTGTTATTTC 60.183 42.308 0.00 0.00 0.00 2.17
7605 8379 2.044946 GCACCCCCACATCTCACC 60.045 66.667 0.00 0.00 0.00 4.02
7620 8394 1.473258 ACAAGTTGAGGCTGTTTGCA 58.527 45.000 10.54 0.00 45.15 4.08
7621 8395 2.195922 CAACAAGTTGAGGCTGTTTGC 58.804 47.619 10.54 0.00 42.93 3.68
7634 8408 7.660208 CCAAGACTATTACAGGTTACAACAAGT 59.340 37.037 0.00 0.00 0.00 3.16
7661 8435 7.252612 TCTGTAGATAACCTTTGAACCATCA 57.747 36.000 0.00 0.00 0.00 3.07
7702 8477 8.494433 TGAGCAATCCTAATTTGGAGTAACTAT 58.506 33.333 14.05 0.00 39.78 2.12
7710 8485 8.659527 TCACTATATGAGCAATCCTAATTTGGA 58.340 33.333 11.15 11.15 35.10 3.53
7791 8568 6.313744 AGACAACAATAAAGCCTACACAAC 57.686 37.500 0.00 0.00 0.00 3.32
7921 8699 7.700022 AAGAAAATCTTGATTCAGGAAGAGG 57.300 36.000 2.30 0.00 34.98 3.69
7954 8734 6.071728 CCAGCATTTCACCAAAACTCTTATCT 60.072 38.462 0.00 0.00 0.00 1.98
7955 8735 6.095377 CCAGCATTTCACCAAAACTCTTATC 58.905 40.000 0.00 0.00 0.00 1.75
7956 8736 5.567423 GCCAGCATTTCACCAAAACTCTTAT 60.567 40.000 0.00 0.00 0.00 1.73
7957 8737 4.261994 GCCAGCATTTCACCAAAACTCTTA 60.262 41.667 0.00 0.00 0.00 2.10
7959 8739 2.036346 GCCAGCATTTCACCAAAACTCT 59.964 45.455 0.00 0.00 0.00 3.24
7960 8740 2.407090 GCCAGCATTTCACCAAAACTC 58.593 47.619 0.00 0.00 0.00 3.01
8065 8849 0.322975 GAGGTGCAGTCTCCACATGT 59.677 55.000 0.00 0.00 34.94 3.21
8135 8919 2.588464 TTTCCTTCATTTACCCCGCA 57.412 45.000 0.00 0.00 0.00 5.69
8248 9227 4.696877 AGTGAATCAATCTTCGACAATGCA 59.303 37.500 0.00 0.00 0.00 3.96
8250 9229 5.026462 GCAGTGAATCAATCTTCGACAATG 58.974 41.667 0.00 0.00 0.00 2.82
8274 9253 6.092955 ACTTCGTGGTACTTCATAAAGTCA 57.907 37.500 0.00 0.00 44.64 3.41
8277 9256 5.682049 CGACTTCGTGGTACTTCATAAAG 57.318 43.478 0.00 0.00 35.10 1.85
8304 11264 4.283212 ACACCACCCCTTTATTTGTCATTG 59.717 41.667 0.00 0.00 0.00 2.82
8314 11274 2.487625 CCTTTCGAACACCACCCCTTTA 60.488 50.000 0.00 0.00 0.00 1.85
8341 11301 6.199154 CACGATGTATCTATTGTCTCCAACAC 59.801 42.308 0.00 0.00 37.70 3.32
8342 11302 6.273071 CACGATGTATCTATTGTCTCCAACA 58.727 40.000 0.00 0.00 35.59 3.33
8464 11439 5.735285 TCATCACCTTCTATGAGGCTATG 57.265 43.478 0.00 0.00 40.65 2.23
8465 11440 6.262980 AGATCATCACCTTCTATGAGGCTAT 58.737 40.000 0.00 0.00 40.65 2.97
8469 11444 6.574073 GCCTAAGATCATCACCTTCTATGAGG 60.574 46.154 0.00 0.00 42.75 3.86
8473 11448 6.753913 TTGCCTAAGATCATCACCTTCTAT 57.246 37.500 0.00 0.00 0.00 1.98
8474 11449 6.753913 ATTGCCTAAGATCATCACCTTCTA 57.246 37.500 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.