Multiple sequence alignment - TraesCS7B01G069600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G069600 chr7B 100.000 4849 0 0 1 4849 75023245 75028093 0.000000e+00 8955.0
1 TraesCS7B01G069600 chr7B 99.399 832 3 1 4020 4849 75034770 75035601 0.000000e+00 1507.0
2 TraesCS7B01G069600 chr7B 84.960 625 48 19 4245 4849 393318560 393319158 4.180000e-165 592.0
3 TraesCS7B01G069600 chr7B 98.726 157 2 0 2296 2452 48784255 48784099 3.700000e-71 279.0
4 TraesCS7B01G069600 chr7B 97.391 115 3 0 600 714 548384353 548384239 3.830000e-46 196.0
5 TraesCS7B01G069600 chr7B 95.082 122 6 0 592 713 537786830 537786951 4.950000e-45 193.0
6 TraesCS7B01G069600 chr7B 100.000 50 0 0 2607 2656 75025497 75025546 5.170000e-15 93.5
7 TraesCS7B01G069600 chr7B 100.000 50 0 0 2253 2302 75025851 75025900 5.170000e-15 93.5
8 TraesCS7B01G069600 chr7D 92.555 1773 74 22 2451 4207 116434844 116436574 0.000000e+00 2490.0
9 TraesCS7B01G069600 chr7D 96.434 701 22 3 1576 2274 116434166 116434865 0.000000e+00 1153.0
10 TraesCS7B01G069600 chr7D 92.943 666 29 8 4192 4849 116436588 116437243 0.000000e+00 953.0
11 TraesCS7B01G069600 chr7D 94.973 557 13 2 699 1240 116432840 116433396 0.000000e+00 859.0
12 TraesCS7B01G069600 chr7D 83.243 740 93 17 1576 2295 115824062 115824790 0.000000e+00 651.0
13 TraesCS7B01G069600 chr7D 86.154 585 64 11 3332 3916 116091529 116092096 2.480000e-172 616.0
14 TraesCS7B01G069600 chr7D 85.666 586 66 11 3332 3915 115824983 115825552 6.940000e-168 601.0
15 TraesCS7B01G069600 chr7D 85.258 563 73 9 1740 2295 116090777 116091336 5.440000e-159 571.0
16 TraesCS7B01G069600 chr7D 89.333 450 32 9 769 1203 116052092 116052540 7.090000e-153 551.0
17 TraesCS7B01G069600 chr7D 90.886 395 20 3 861 1240 115822978 115823371 2.590000e-142 516.0
18 TraesCS7B01G069600 chr7D 85.644 404 32 12 4218 4596 393579474 393579876 7.560000e-108 401.0
19 TraesCS7B01G069600 chr7D 88.596 342 15 10 1233 1574 116433418 116433735 1.260000e-105 394.0
20 TraesCS7B01G069600 chr7D 79.062 597 101 22 3208 3800 115874495 115875071 5.890000e-104 388.0
21 TraesCS7B01G069600 chr7D 84.878 410 30 10 1 380 116051011 116051418 7.610000e-103 385.0
22 TraesCS7B01G069600 chr7D 84.428 411 33 5 1 380 115821396 115821806 4.580000e-100 375.0
23 TraesCS7B01G069600 chr7D 83.503 394 32 14 228 593 116432456 116432844 2.160000e-88 337.0
24 TraesCS7B01G069600 chr7D 94.706 170 8 1 699 867 115821916 115822085 3.720000e-66 263.0
25 TraesCS7B01G069600 chr7D 78.089 429 80 9 3374 3800 116128881 116129297 4.810000e-65 259.0
26 TraesCS7B01G069600 chr7D 87.500 192 17 4 4630 4818 393579874 393580061 1.060000e-51 215.0
27 TraesCS7B01G069600 chr7D 89.744 156 16 0 73 228 116432272 116432427 2.960000e-47 200.0
28 TraesCS7B01G069600 chr7D 89.565 115 10 2 1233 1347 115823393 115823505 1.410000e-30 145.0
29 TraesCS7B01G069600 chr7D 93.421 76 5 0 1 76 116429639 116429714 3.970000e-21 113.0
30 TraesCS7B01G069600 chr7D 88.506 87 10 0 2609 2695 115824750 115824836 6.640000e-19 106.0
31 TraesCS7B01G069600 chr7D 87.356 87 11 0 2609 2695 116091296 116091382 3.090000e-17 100.0
32 TraesCS7B01G069600 chr7A 90.554 1535 107 19 3332 4849 120465633 120467146 0.000000e+00 1997.0
33 TraesCS7B01G069600 chr7A 93.537 557 21 6 699 1240 120463491 120464047 0.000000e+00 815.0
34 TraesCS7B01G069600 chr7A 84.032 739 91 14 1576 2295 120464709 120465439 0.000000e+00 686.0
35 TraesCS7B01G069600 chr7A 85.586 666 43 24 4218 4849 446325930 446326576 0.000000e+00 649.0
36 TraesCS7B01G069600 chr7A 82.907 626 69 20 3308 3916 120218591 120219195 3.320000e-146 529.0
37 TraesCS7B01G069600 chr7A 80.518 657 68 25 821 1429 120217636 120218280 2.660000e-122 449.0
38 TraesCS7B01G069600 chr7A 85.432 405 29 5 1 377 120462969 120463371 1.260000e-105 394.0
39 TraesCS7B01G069600 chr7A 87.640 89 11 0 2607 2695 120465397 120465485 2.390000e-18 104.0
40 TraesCS7B01G069600 chr1A 100.000 154 0 0 2303 2456 570239807 570239960 7.940000e-73 285.0
41 TraesCS7B01G069600 chr5B 99.359 156 0 1 2303 2457 387366750 387366595 1.030000e-71 281.0
42 TraesCS7B01G069600 chr5B 99.099 111 1 0 597 707 9643306 9643416 2.960000e-47 200.0
43 TraesCS7B01G069600 chr5B 95.833 120 4 1 599 718 70910795 70910677 4.950000e-45 193.0
44 TraesCS7B01G069600 chr4B 100.000 152 0 0 2303 2454 13282190 13282341 1.030000e-71 281.0
45 TraesCS7B01G069600 chr4B 99.351 154 1 0 2303 2456 12892887 12893040 3.700000e-71 279.0
46 TraesCS7B01G069600 chr4B 97.842 139 3 0 2476 2614 106047769 106047631 1.740000e-59 241.0
47 TraesCS7B01G069600 chr4B 93.077 130 5 4 596 723 547569994 547569867 2.300000e-43 187.0
48 TraesCS7B01G069600 chr3B 100.000 152 0 0 2303 2454 157236497 157236648 1.030000e-71 281.0
49 TraesCS7B01G069600 chr3B 96.364 165 4 1 2283 2447 820903692 820903854 2.220000e-68 270.0
50 TraesCS7B01G069600 chr3B 94.702 151 7 1 2476 2625 520146381 520146231 2.920000e-57 233.0
51 TraesCS7B01G069600 chr6B 98.137 161 1 2 2303 2462 20920542 20920383 3.700000e-71 279.0
52 TraesCS7B01G069600 chr6B 100.000 149 0 0 2303 2451 455079746 455079894 4.780000e-70 276.0
53 TraesCS7B01G069600 chr6B 97.273 110 3 0 598 707 195807055 195807164 2.300000e-43 187.0
54 TraesCS7B01G069600 chr3D 98.529 136 2 0 2473 2608 347587453 347587588 1.740000e-59 241.0
55 TraesCS7B01G069600 chr5A 98.496 133 2 0 2476 2608 85859229 85859097 8.110000e-58 235.0
56 TraesCS7B01G069600 chr2B 96.479 142 4 1 2476 2617 225360294 225360154 2.920000e-57 233.0
57 TraesCS7B01G069600 chrUn 97.761 134 3 0 2473 2606 48495390 48495523 1.050000e-56 231.0
58 TraesCS7B01G069600 chrUn 97.761 134 3 0 2473 2606 235110713 235110846 1.050000e-56 231.0
59 TraesCS7B01G069600 chrUn 97.761 134 3 0 2473 2606 386426376 386426509 1.050000e-56 231.0
60 TraesCS7B01G069600 chrUn 95.161 124 4 2 600 723 37054870 37054991 1.380000e-45 195.0
61 TraesCS7B01G069600 chr2A 100.000 109 0 0 598 706 412471540 412471648 8.230000e-48 202.0
62 TraesCS7B01G069600 chr1B 96.581 117 4 0 594 710 510795216 510795100 1.380000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G069600 chr7B 75023245 75028093 4848 False 3047.333333 8955 100.000000 1 4849 3 chr7B.!!$F4 4848
1 TraesCS7B01G069600 chr7B 75034770 75035601 831 False 1507.000000 1507 99.399000 4020 4849 1 chr7B.!!$F1 829
2 TraesCS7B01G069600 chr7B 393318560 393319158 598 False 592.000000 592 84.960000 4245 4849 1 chr7B.!!$F2 604
3 TraesCS7B01G069600 chr7D 116429639 116437243 7604 False 812.375000 2490 91.521125 1 4849 8 chr7D.!!$F6 4848
4 TraesCS7B01G069600 chr7D 116051011 116052540 1529 False 468.000000 551 87.105500 1 1203 2 chr7D.!!$F4 1202
5 TraesCS7B01G069600 chr7D 116090777 116092096 1319 False 429.000000 616 86.256000 1740 3916 3 chr7D.!!$F5 2176
6 TraesCS7B01G069600 chr7D 115874495 115875071 576 False 388.000000 388 79.062000 3208 3800 1 chr7D.!!$F1 592
7 TraesCS7B01G069600 chr7D 115821396 115825552 4156 False 379.571429 651 88.142857 1 3915 7 chr7D.!!$F3 3914
8 TraesCS7B01G069600 chr7D 393579474 393580061 587 False 308.000000 401 86.572000 4218 4818 2 chr7D.!!$F7 600
9 TraesCS7B01G069600 chr7A 120462969 120467146 4177 False 799.200000 1997 88.239000 1 4849 5 chr7A.!!$F3 4848
10 TraesCS7B01G069600 chr7A 446325930 446326576 646 False 649.000000 649 85.586000 4218 4849 1 chr7A.!!$F1 631
11 TraesCS7B01G069600 chr7A 120217636 120219195 1559 False 489.000000 529 81.712500 821 3916 2 chr7A.!!$F2 3095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 3677 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.00 4.55 F
1143 5128 0.032615 AGGAGAGCGATGGAGAGGTT 60.033 55.0 0.00 0.00 0.00 3.50 F
1379 5455 0.526211 GTTCAGGTGGAATTTCGGGC 59.474 55.0 0.00 0.00 37.93 6.13 F
2372 6963 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.0 0.00 0.00 37.28 3.67 F
2373 6964 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.0 0.00 0.00 34.81 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 6944 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.0 0.00 0.0 0.00 2.74 R
2354 6945 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.0 0.00 0.0 0.00 3.18 R
2380 6971 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.0 19.43 0.0 41.02 3.28 R
3673 8279 0.322456 GCAGGGCATGTTGGTACAGA 60.322 55.0 0.00 0.0 42.39 3.41 R
3975 8599 0.962489 AGCGGGCTAGCACTATACAG 59.038 55.0 16.47 0.0 40.15 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 6.889301 ACCATAATAACTTCATGGCATCAG 57.111 37.500 0.00 0.00 42.54 2.90
125 2687 6.992123 AGACTACACAGATTGACAATTGACAA 59.008 34.615 22.24 22.24 34.59 3.18
186 2748 4.345854 TGGTTTGGTTTTTAGTGGAGTGT 58.654 39.130 0.00 0.00 0.00 3.55
330 2922 3.064958 CACATACCTCACACGACGTCTAT 59.935 47.826 14.70 0.00 0.00 1.98
357 2949 3.359695 TGGCTTTTAGTGGGGTACATC 57.640 47.619 0.00 0.00 0.00 3.06
382 3001 4.998672 TCGACCACCTTCATTAAAATCGTT 59.001 37.500 0.00 0.00 0.00 3.85
401 3020 8.454570 AATCGTTTTATATTTTGATACGGGGT 57.545 30.769 0.00 0.00 0.00 4.95
402 3021 9.558396 AATCGTTTTATATTTTGATACGGGGTA 57.442 29.630 0.00 0.00 0.00 3.69
403 3022 8.954950 TCGTTTTATATTTTGATACGGGGTAA 57.045 30.769 0.00 0.00 0.00 2.85
474 3122 7.812669 CGGAAATAACTTTTGCTTTTATGGAGT 59.187 33.333 0.00 0.00 0.00 3.85
515 3163 0.679505 TGAGGAGGAACCAACACTCG 59.320 55.000 0.00 0.00 42.04 4.18
523 3171 4.398319 AGGAACCAACACTCGAATGAATT 58.602 39.130 0.00 0.00 0.00 2.17
525 3173 4.475944 GAACCAACACTCGAATGAATTGG 58.524 43.478 13.00 13.00 41.92 3.16
547 3606 6.552008 TGGGATTCATAGTGTTTCCTCTTTT 58.448 36.000 0.00 0.00 0.00 2.27
571 3633 3.350219 AACGATGCAAATACAGAGGGT 57.650 42.857 0.00 0.00 0.00 4.34
592 3654 4.307432 GTGATTTGAGTGACGAGAAGGAA 58.693 43.478 0.00 0.00 0.00 3.36
593 3655 4.750098 GTGATTTGAGTGACGAGAAGGAAA 59.250 41.667 0.00 0.00 0.00 3.13
594 3656 4.991056 TGATTTGAGTGACGAGAAGGAAAG 59.009 41.667 0.00 0.00 0.00 2.62
595 3657 3.386768 TTGAGTGACGAGAAGGAAAGG 57.613 47.619 0.00 0.00 0.00 3.11
596 3658 2.594131 TGAGTGACGAGAAGGAAAGGA 58.406 47.619 0.00 0.00 0.00 3.36
597 3659 2.963101 TGAGTGACGAGAAGGAAAGGAA 59.037 45.455 0.00 0.00 0.00 3.36
598 3660 3.243771 TGAGTGACGAGAAGGAAAGGAAC 60.244 47.826 0.00 0.00 0.00 3.62
600 3662 4.150359 AGTGACGAGAAGGAAAGGAACTA 58.850 43.478 0.00 0.00 38.49 2.24
601 3663 4.022155 AGTGACGAGAAGGAAAGGAACTAC 60.022 45.833 0.00 0.00 38.49 2.73
602 3664 4.022155 GTGACGAGAAGGAAAGGAACTACT 60.022 45.833 0.00 0.00 38.49 2.57
603 3665 4.217983 TGACGAGAAGGAAAGGAACTACTC 59.782 45.833 0.00 0.00 38.49 2.59
604 3666 3.510753 ACGAGAAGGAAAGGAACTACTCC 59.489 47.826 0.00 0.00 45.81 3.85
605 3667 3.119065 CGAGAAGGAAAGGAACTACTCCC 60.119 52.174 0.00 0.00 46.81 4.30
606 3668 4.098155 GAGAAGGAAAGGAACTACTCCCT 58.902 47.826 0.00 0.00 46.81 4.20
607 3669 4.098155 AGAAGGAAAGGAACTACTCCCTC 58.902 47.826 0.00 0.00 46.81 4.30
608 3670 2.835389 AGGAAAGGAACTACTCCCTCC 58.165 52.381 2.57 2.57 46.81 4.30
609 3671 1.481363 GGAAAGGAACTACTCCCTCCG 59.519 57.143 0.00 0.00 46.81 4.63
610 3672 2.177734 GAAAGGAACTACTCCCTCCGT 58.822 52.381 0.00 0.00 46.81 4.69
611 3673 2.322339 AAGGAACTACTCCCTCCGTT 57.678 50.000 0.00 0.00 46.81 4.44
612 3674 1.849977 AGGAACTACTCCCTCCGTTC 58.150 55.000 0.00 0.00 46.81 3.95
613 3675 0.455005 GGAACTACTCCCTCCGTTCG 59.545 60.000 0.00 0.00 38.44 3.95
614 3676 0.455005 GAACTACTCCCTCCGTTCGG 59.545 60.000 4.74 4.74 0.00 4.30
615 3677 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
616 3678 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
617 3679 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
618 3680 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
619 3681 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
620 3682 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
621 3683 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
622 3684 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
623 3685 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
624 3686 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
625 3687 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
626 3688 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
627 3689 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
628 3690 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
629 3691 3.545078 CCGTTCGGAATTACTTGTCGTAG 59.455 47.826 5.19 0.00 0.00 3.51
630 3692 4.406069 CGTTCGGAATTACTTGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
631 3693 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
632 3694 5.343058 CGTTCGGAATTACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
633 3695 6.034256 CGTTCGGAATTACTTGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
634 3696 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
635 3697 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
636 3698 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
637 3699 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
638 3700 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
639 3701 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
640 3702 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
641 3703 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
642 3704 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
643 3705 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
644 3706 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
645 3707 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
646 3708 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
647 3709 8.637196 TGTCGTAGAAATGGATGTATCTAGAT 57.363 34.615 10.73 10.73 39.69 1.98
648 3710 8.515414 TGTCGTAGAAATGGATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
649 3711 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
650 3712 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
681 3743 9.606631 AGTTCTAGATACATCCATTTTCAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
682 3744 9.383519 GTTCTAGATACATCCATTTTCAAGACA 57.616 33.333 0.00 0.00 0.00 3.41
683 3745 9.958180 TTCTAGATACATCCATTTTCAAGACAA 57.042 29.630 0.00 0.00 0.00 3.18
684 3746 9.605275 TCTAGATACATCCATTTTCAAGACAAG 57.395 33.333 0.00 0.00 0.00 3.16
685 3747 9.388506 CTAGATACATCCATTTTCAAGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
687 3749 9.739276 AGATACATCCATTTTCAAGACAAGTAA 57.261 29.630 0.00 0.00 0.00 2.24
691 3753 8.306761 ACATCCATTTTCAAGACAAGTAATTCC 58.693 33.333 0.00 0.00 0.00 3.01
692 3754 6.908825 TCCATTTTCAAGACAAGTAATTCCG 58.091 36.000 0.00 0.00 0.00 4.30
693 3755 6.712998 TCCATTTTCAAGACAAGTAATTCCGA 59.287 34.615 0.00 0.00 0.00 4.55
694 3756 7.229707 TCCATTTTCAAGACAAGTAATTCCGAA 59.770 33.333 0.00 0.00 0.00 4.30
695 3757 7.326063 CCATTTTCAAGACAAGTAATTCCGAAC 59.674 37.037 0.00 0.00 0.00 3.95
696 3758 5.585500 TTCAAGACAAGTAATTCCGAACG 57.415 39.130 0.00 0.00 0.00 3.95
697 3759 3.991773 TCAAGACAAGTAATTCCGAACGG 59.008 43.478 6.94 6.94 0.00 4.44
698 3760 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
699 3761 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
700 3762 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
701 3763 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
763 3826 4.570663 CAGATCGGACGGACGGGC 62.571 72.222 0.00 0.00 0.00 6.13
969 4939 1.621377 GCCTCCACCCTCTCCTCTA 59.379 63.158 0.00 0.00 0.00 2.43
1134 5119 1.527380 GGAGTCGGAGGAGAGCGAT 60.527 63.158 0.00 0.00 0.00 4.58
1137 5122 1.824329 GTCGGAGGAGAGCGATGGA 60.824 63.158 0.00 0.00 0.00 3.41
1143 5128 0.032615 AGGAGAGCGATGGAGAGGTT 60.033 55.000 0.00 0.00 0.00 3.50
1275 5318 4.023291 GACAGGCTTATTTTGGGGATTGA 58.977 43.478 0.00 0.00 0.00 2.57
1316 5392 8.608844 TTTGGAAATTATTGCGTTGGTTTATT 57.391 26.923 0.00 0.00 0.00 1.40
1338 5414 4.650545 TTTACGGTTCGTTTGATGCTAC 57.349 40.909 0.00 0.00 41.54 3.58
1379 5455 0.526211 GTTCAGGTGGAATTTCGGGC 59.474 55.000 0.00 0.00 37.93 6.13
1406 5484 6.892658 TCAGTAATGCAGTGGTAATTTGTT 57.107 33.333 0.00 0.00 0.00 2.83
1407 5485 7.283625 TCAGTAATGCAGTGGTAATTTGTTT 57.716 32.000 0.00 0.00 0.00 2.83
1408 5486 7.721402 TCAGTAATGCAGTGGTAATTTGTTTT 58.279 30.769 0.00 0.00 0.00 2.43
1418 5496 8.726068 CAGTGGTAATTTGTTTTGGAAAAAGTT 58.274 29.630 0.00 0.00 0.00 2.66
1425 5503 6.927294 TTGTTTTGGAAAAAGTTGTTGTGT 57.073 29.167 0.00 0.00 0.00 3.72
1426 5504 6.532365 TGTTTTGGAAAAAGTTGTTGTGTC 57.468 33.333 0.00 0.00 0.00 3.67
1427 5505 6.049149 TGTTTTGGAAAAAGTTGTTGTGTCA 58.951 32.000 0.00 0.00 0.00 3.58
1438 5516 3.858868 TTGTGTCAGGTCGGAGCGC 62.859 63.158 0.00 0.00 0.00 5.92
1444 5522 2.107141 AGGTCGGAGCGCATAAGC 59.893 61.111 11.47 1.23 37.42 3.09
1560 5668 6.344572 TGCGTAAAATACTCTAATGTGCAG 57.655 37.500 0.00 0.00 0.00 4.41
1566 5674 9.146984 GTAAAATACTCTAATGTGCAGTGTGTA 57.853 33.333 0.00 0.00 0.00 2.90
1683 6252 2.195922 CAAAACTTCTGTTGGCTGTGC 58.804 47.619 0.00 0.00 36.39 4.57
1716 6298 7.838771 ATGTATAACCGTTAGTTCCAACTTC 57.161 36.000 0.00 0.00 40.05 3.01
1717 6299 6.996509 TGTATAACCGTTAGTTCCAACTTCT 58.003 36.000 0.00 0.00 40.05 2.85
2031 6618 7.542890 TGTTTTCTGTGAAGCTATTTGTTCAA 58.457 30.769 0.00 0.00 34.52 2.69
2081 6670 3.750371 TGTGTAAACCTGCAATGCTAGT 58.250 40.909 6.82 0.31 0.00 2.57
2208 6799 8.218488 ACCAAGTTTTCTAGGAACTTCTGTATT 58.782 33.333 17.05 0.00 43.44 1.89
2264 6855 9.941325 ACATTTTAATTCAATAGGCATTGTTCA 57.059 25.926 8.72 0.00 41.96 3.18
2273 6864 9.752961 TTCAATAGGCATTGTTCAATATCATTG 57.247 29.630 8.72 6.43 41.96 2.82
2274 6865 8.361889 TCAATAGGCATTGTTCAATATCATTGG 58.638 33.333 8.72 0.42 41.96 3.16
2275 6866 7.844493 ATAGGCATTGTTCAATATCATTGGT 57.156 32.000 0.00 0.00 0.00 3.67
2276 6867 8.938801 ATAGGCATTGTTCAATATCATTGGTA 57.061 30.769 0.00 0.00 0.00 3.25
2277 6868 7.844493 AGGCATTGTTCAATATCATTGGTAT 57.156 32.000 0.00 0.00 0.00 2.73
2278 6869 8.253867 AGGCATTGTTCAATATCATTGGTATT 57.746 30.769 0.00 0.00 0.00 1.89
2279 6870 9.365906 AGGCATTGTTCAATATCATTGGTATTA 57.634 29.630 1.89 0.00 0.00 0.98
2298 6889 9.778741 TGGTATTATCCAGATTAAGCTAAGTTG 57.221 33.333 0.00 0.00 33.19 3.16
2299 6890 9.780186 GGTATTATCCAGATTAAGCTAAGTTGT 57.220 33.333 0.00 0.00 0.00 3.32
2305 6896 8.492673 TCCAGATTAAGCTAAGTTGTTATGTG 57.507 34.615 0.00 0.00 0.00 3.21
2306 6897 8.318412 TCCAGATTAAGCTAAGTTGTTATGTGA 58.682 33.333 0.00 0.00 0.00 3.58
2307 6898 8.391106 CCAGATTAAGCTAAGTTGTTATGTGAC 58.609 37.037 0.00 0.00 0.00 3.67
2308 6899 8.391106 CAGATTAAGCTAAGTTGTTATGTGACC 58.609 37.037 0.00 0.00 0.00 4.02
2309 6900 8.100791 AGATTAAGCTAAGTTGTTATGTGACCA 58.899 33.333 0.00 0.00 0.00 4.02
2310 6901 8.807948 ATTAAGCTAAGTTGTTATGTGACCAT 57.192 30.769 0.00 0.00 34.97 3.55
2311 6902 6.500684 AAGCTAAGTTGTTATGTGACCATG 57.499 37.500 0.00 0.00 32.29 3.66
2312 6903 5.804639 AGCTAAGTTGTTATGTGACCATGA 58.195 37.500 0.00 0.00 32.29 3.07
2313 6904 5.877012 AGCTAAGTTGTTATGTGACCATGAG 59.123 40.000 0.00 0.00 32.29 2.90
2314 6905 5.065218 GCTAAGTTGTTATGTGACCATGAGG 59.935 44.000 0.00 0.00 42.21 3.86
2329 6920 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2330 6921 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2331 6922 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2332 6923 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2333 6924 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2334 6925 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2335 6926 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2336 6927 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2337 6928 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2338 6929 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2352 6943 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2353 6944 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2354 6945 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2355 6946 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2356 6947 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2357 6948 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2358 6949 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2359 6950 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2360 6951 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2361 6952 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2362 6953 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2363 6954 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2364 6955 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2365 6956 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2366 6957 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2367 6958 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2368 6959 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2369 6960 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2370 6961 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2371 6962 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2372 6963 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2373 6964 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2374 6965 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2375 6966 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2376 6967 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2377 6968 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2378 6969 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2379 6970 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2380 6971 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2381 6972 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2382 6973 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2383 6974 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2384 6975 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2385 6976 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2386 6977 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2387 6978 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2388 6979 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2389 6980 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2394 6985 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2395 6986 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2396 6987 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2397 6988 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2398 6989 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2399 6990 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2400 6991 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2401 6992 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2402 6993 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2403 6994 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2404 6995 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2405 6996 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2406 6997 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2407 6998 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2408 6999 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2409 7000 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2410 7001 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2411 7002 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2412 7003 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2413 7004 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2438 7029 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2439 7030 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2440 7031 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2441 7032 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2442 7033 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2443 7034 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2444 7035 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2445 7036 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2446 7037 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
2447 7038 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
2474 7065 3.737266 GGCATTGTTCAATATCATTGCCG 59.263 43.478 12.79 0.00 44.84 5.69
2496 7087 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
2568 7159 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
2593 7184 3.195610 TGTGTGGGAGCTTCTATGTACTG 59.804 47.826 0.00 0.00 0.00 2.74
2603 7194 4.282496 CTTCTATGTACTGGGTCTGTCCT 58.718 47.826 0.00 0.00 36.25 3.85
2676 7267 9.661563 TTGTTACTTATTTCCGTCATAATGAGT 57.338 29.630 0.00 0.00 35.54 3.41
2777 7369 6.940298 AGTGCCTTCTTTGTTGTTTATAGCTA 59.060 34.615 0.00 0.00 0.00 3.32
3062 7656 4.466827 TGTACTATCTGCATCGGGTAAGA 58.533 43.478 0.00 0.00 0.00 2.10
3079 7673 7.177921 TCGGGTAAGATTTTCTTCTCTTGTAGA 59.822 37.037 0.00 0.00 37.89 2.59
3081 7675 7.549842 GGGTAAGATTTTCTTCTCTTGTAGACC 59.450 40.741 0.00 0.00 37.89 3.85
3082 7676 8.095169 GGTAAGATTTTCTTCTCTTGTAGACCA 58.905 37.037 0.00 0.00 37.89 4.02
3083 7677 9.660180 GTAAGATTTTCTTCTCTTGTAGACCAT 57.340 33.333 0.00 0.00 37.89 3.55
3086 7680 9.829507 AGATTTTCTTCTCTTGTAGACCATATG 57.170 33.333 0.00 0.00 32.51 1.78
3087 7681 7.849804 TTTTCTTCTCTTGTAGACCATATGC 57.150 36.000 0.00 0.00 32.51 3.14
3088 7682 6.544928 TTCTTCTCTTGTAGACCATATGCA 57.455 37.500 0.00 0.00 32.51 3.96
3089 7683 5.907207 TCTTCTCTTGTAGACCATATGCAC 58.093 41.667 0.00 0.00 32.51 4.57
3090 7684 4.672587 TCTCTTGTAGACCATATGCACC 57.327 45.455 0.00 0.00 0.00 5.01
3091 7685 3.388024 TCTCTTGTAGACCATATGCACCC 59.612 47.826 0.00 0.00 0.00 4.61
3092 7686 3.111484 TCTTGTAGACCATATGCACCCA 58.889 45.455 0.00 0.00 0.00 4.51
3093 7687 3.716353 TCTTGTAGACCATATGCACCCAT 59.284 43.478 0.00 0.00 35.44 4.00
3094 7688 4.904853 TCTTGTAGACCATATGCACCCATA 59.095 41.667 0.00 0.00 38.25 2.74
3095 7689 5.368230 TCTTGTAGACCATATGCACCCATAA 59.632 40.000 0.00 0.00 37.47 1.90
3096 7690 5.638530 TGTAGACCATATGCACCCATAAA 57.361 39.130 0.00 0.00 37.47 1.40
3097 7691 5.620206 TGTAGACCATATGCACCCATAAAG 58.380 41.667 0.00 0.00 37.47 1.85
3098 7692 5.368230 TGTAGACCATATGCACCCATAAAGA 59.632 40.000 0.00 0.00 37.47 2.52
3099 7693 5.387113 AGACCATATGCACCCATAAAGAA 57.613 39.130 0.00 0.00 37.47 2.52
3100 7694 5.957132 AGACCATATGCACCCATAAAGAAT 58.043 37.500 0.00 0.00 37.47 2.40
3101 7695 5.771666 AGACCATATGCACCCATAAAGAATG 59.228 40.000 0.00 0.00 37.47 2.67
3151 7745 4.184629 CGGTAACTTCCATCTCTGAAAGG 58.815 47.826 0.00 0.00 0.00 3.11
3197 7791 4.759693 TGTCTAAGCAGTGGTATGTTTTGG 59.240 41.667 0.00 0.00 0.00 3.28
3468 8068 4.043310 TCTCACCTCAATCATCAAAAGGGT 59.957 41.667 0.00 0.00 0.00 4.34
3565 8165 2.626582 GCAAAGAGCTGAGCACTGT 58.373 52.632 7.39 0.00 41.15 3.55
3566 8166 0.950116 GCAAAGAGCTGAGCACTGTT 59.050 50.000 7.39 0.54 41.15 3.16
3567 8167 1.334779 GCAAAGAGCTGAGCACTGTTG 60.335 52.381 7.39 13.35 41.15 3.33
3594 8200 2.024414 GGGATATCAACAACAGCCCAC 58.976 52.381 4.83 0.00 34.25 4.61
3611 8217 3.114616 CTGAAGTGCAGGACGCCG 61.115 66.667 0.00 0.00 41.07 6.46
3628 8234 1.063327 CGTCGTCTCCAGCTGCTAG 59.937 63.158 8.66 8.11 0.00 3.42
3673 8279 4.946157 CAGTAAAGAAGATGAGCATGGGTT 59.054 41.667 0.00 0.00 0.00 4.11
3689 8303 1.173913 GGTTCTGTACCAACATGCCC 58.826 55.000 0.00 0.00 46.92 5.36
3782 8396 3.654414 ACTCATCTCAGTTTCAACGGTC 58.346 45.455 0.00 0.00 0.00 4.79
3787 8401 0.748450 TCAGTTTCAACGGTCGGTCT 59.252 50.000 0.00 0.00 0.00 3.85
3839 8453 2.034066 CCCAGGGAAAAGCGCAGA 59.966 61.111 11.47 0.00 0.00 4.26
3855 8469 3.365364 GCGCAGAAAGAATTAGCAACAGT 60.365 43.478 0.30 0.00 0.00 3.55
3922 8536 2.101582 CTGCGGAATCTAGTGGCTAGTT 59.898 50.000 3.48 0.00 35.72 2.24
3923 8537 2.159099 TGCGGAATCTAGTGGCTAGTTG 60.159 50.000 3.48 0.00 35.72 3.16
3926 8540 3.635373 CGGAATCTAGTGGCTAGTTGGTA 59.365 47.826 3.48 0.00 35.72 3.25
3942 8556 4.100498 AGTTGGTAGTACCCATATTCGGTG 59.900 45.833 16.91 0.00 37.50 4.94
3956 8570 4.717233 ATTCGGTGCAATGCTTTGATTA 57.283 36.364 15.97 0.00 34.60 1.75
3957 8571 3.485947 TCGGTGCAATGCTTTGATTAC 57.514 42.857 15.97 10.35 34.60 1.89
3958 8572 2.816672 TCGGTGCAATGCTTTGATTACA 59.183 40.909 15.97 1.86 34.60 2.41
3975 8599 5.240623 TGATTACAATGTTCAGTGGTGGTTC 59.759 40.000 5.32 0.00 0.00 3.62
3991 8615 2.698797 TGGTTCTGTATAGTGCTAGCCC 59.301 50.000 13.29 0.00 0.00 5.19
4018 8644 8.778358 GCTGGTATTCTTCCTTTTGATACATAG 58.222 37.037 0.00 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.961062 GCCCTGATGCCATGAAGTTATT 59.039 45.455 0.00 0.00 0.00 1.40
65 66 9.646427 TTTATGAAAACAAACACTAATATGCCC 57.354 29.630 0.00 0.00 0.00 5.36
104 2666 5.334028 CGCTTGTCAATTGTCAATCTGTGTA 60.334 40.000 16.64 0.00 0.00 2.90
108 2670 2.912967 GCGCTTGTCAATTGTCAATCTG 59.087 45.455 16.64 11.20 0.00 2.90
125 2687 2.357396 TCTGCATCGTGTTGCGCT 60.357 55.556 9.73 0.00 45.77 5.92
231 2822 2.336945 ACATGTCGTGATGCCATGAT 57.663 45.000 2.35 0.00 40.15 2.45
330 2922 4.484912 ACCCCACTAAAAGCCAAACATAA 58.515 39.130 0.00 0.00 0.00 1.90
357 2949 5.121768 ACGATTTTAATGAAGGTGGTCGAAG 59.878 40.000 0.00 0.00 0.00 3.79
401 3020 6.465948 TGAAAGTCGGGTATTGCTTACTTTA 58.534 36.000 0.00 0.00 37.31 1.85
402 3021 5.310451 TGAAAGTCGGGTATTGCTTACTTT 58.690 37.500 0.00 0.00 39.24 2.66
403 3022 4.901868 TGAAAGTCGGGTATTGCTTACTT 58.098 39.130 0.00 0.00 0.00 2.24
458 3097 8.840321 GCTATCTCATACTCCATAAAAGCAAAA 58.160 33.333 0.00 0.00 0.00 2.44
459 3098 7.992608 TGCTATCTCATACTCCATAAAAGCAAA 59.007 33.333 0.00 0.00 32.61 3.68
474 3122 7.148000 CCTCATATCGGTTCTTGCTATCTCATA 60.148 40.741 0.00 0.00 0.00 2.15
523 3171 5.779241 AAGAGGAAACACTATGAATCCCA 57.221 39.130 0.00 0.00 0.00 4.37
525 3173 6.071952 TGCAAAAGAGGAAACACTATGAATCC 60.072 38.462 0.00 0.00 0.00 3.01
531 3590 5.298276 TCGTTTGCAAAAGAGGAAACACTAT 59.702 36.000 21.60 0.00 46.23 2.12
536 3595 4.954238 CATCGTTTGCAAAAGAGGAAAC 57.046 40.909 28.00 8.51 43.62 2.78
564 3623 2.029020 TCGTCACTCAAATCACCCTCTG 60.029 50.000 0.00 0.00 0.00 3.35
571 3633 4.600692 TTCCTTCTCGTCACTCAAATCA 57.399 40.909 0.00 0.00 0.00 2.57
592 3654 2.177734 GAACGGAGGGAGTAGTTCCTT 58.822 52.381 0.00 0.00 45.98 3.36
593 3655 1.849977 GAACGGAGGGAGTAGTTCCT 58.150 55.000 0.00 0.00 45.98 3.36
594 3656 0.455005 CGAACGGAGGGAGTAGTTCC 59.545 60.000 2.21 0.00 46.00 3.62
595 3657 0.455005 CCGAACGGAGGGAGTAGTTC 59.545 60.000 7.53 0.00 39.46 3.01
596 3658 0.038744 TCCGAACGGAGGGAGTAGTT 59.961 55.000 12.04 0.00 39.76 2.24
597 3659 0.038744 TTCCGAACGGAGGGAGTAGT 59.961 55.000 15.34 0.00 46.06 2.73
598 3660 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
599 3661 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
600 3662 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
601 3663 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
602 3664 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
603 3665 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
604 3666 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
605 3667 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
606 3668 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
607 3669 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
608 3670 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
609 3671 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
610 3672 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
611 3673 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
612 3674 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
613 3675 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
614 3676 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
615 3677 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
616 3678 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
617 3679 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
618 3680 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
619 3681 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
620 3682 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
621 3683 8.459911 TCTAGATACATCCATTTCTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
622 3684 8.515414 CATCTAGATACATCCATTTCTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
623 3685 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
624 3686 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
655 3717 9.606631 GTCTTGAAAATGGATGTATCTAGAACT 57.393 33.333 0.00 0.00 0.00 3.01
656 3718 9.383519 TGTCTTGAAAATGGATGTATCTAGAAC 57.616 33.333 0.00 0.00 0.00 3.01
657 3719 9.958180 TTGTCTTGAAAATGGATGTATCTAGAA 57.042 29.630 0.00 0.00 0.00 2.10
658 3720 9.605275 CTTGTCTTGAAAATGGATGTATCTAGA 57.395 33.333 0.00 0.00 0.00 2.43
659 3721 9.388506 ACTTGTCTTGAAAATGGATGTATCTAG 57.611 33.333 0.00 0.00 0.00 2.43
661 3723 9.739276 TTACTTGTCTTGAAAATGGATGTATCT 57.261 29.630 0.00 0.00 0.00 1.98
665 3727 8.306761 GGAATTACTTGTCTTGAAAATGGATGT 58.693 33.333 0.00 0.00 0.00 3.06
666 3728 7.485913 CGGAATTACTTGTCTTGAAAATGGATG 59.514 37.037 0.00 0.00 0.00 3.51
667 3729 7.393234 TCGGAATTACTTGTCTTGAAAATGGAT 59.607 33.333 0.00 0.00 0.00 3.41
668 3730 6.712998 TCGGAATTACTTGTCTTGAAAATGGA 59.287 34.615 0.00 0.00 0.00 3.41
669 3731 6.908825 TCGGAATTACTTGTCTTGAAAATGG 58.091 36.000 0.00 0.00 0.00 3.16
670 3732 7.059488 CGTTCGGAATTACTTGTCTTGAAAATG 59.941 37.037 0.00 0.00 0.00 2.32
671 3733 7.075741 CGTTCGGAATTACTTGTCTTGAAAAT 58.924 34.615 0.00 0.00 0.00 1.82
672 3734 6.423862 CGTTCGGAATTACTTGTCTTGAAAA 58.576 36.000 0.00 0.00 0.00 2.29
673 3735 5.049954 CCGTTCGGAATTACTTGTCTTGAAA 60.050 40.000 5.19 0.00 0.00 2.69
674 3736 4.449743 CCGTTCGGAATTACTTGTCTTGAA 59.550 41.667 5.19 0.00 0.00 2.69
675 3737 3.991773 CCGTTCGGAATTACTTGTCTTGA 59.008 43.478 5.19 0.00 0.00 3.02
676 3738 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
677 3739 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
678 3740 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
679 3741 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
680 3742 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
681 3743 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
682 3744 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
683 3745 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
684 3746 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
685 3747 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
686 3748 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
687 3749 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
688 3750 1.856629 ATTACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.04 33.41 4.30
689 3751 2.734755 TATTACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
690 3752 2.626743 ACATATTACTCCCTCCGTTCGG 59.373 50.000 4.74 4.74 0.00 4.30
691 3753 4.202080 TGAACATATTACTCCCTCCGTTCG 60.202 45.833 0.00 0.00 35.43 3.95
692 3754 5.272283 TGAACATATTACTCCCTCCGTTC 57.728 43.478 0.00 0.00 33.74 3.95
693 3755 5.602978 AGATGAACATATTACTCCCTCCGTT 59.397 40.000 0.00 0.00 0.00 4.44
694 3756 5.148502 AGATGAACATATTACTCCCTCCGT 58.851 41.667 0.00 0.00 0.00 4.69
695 3757 5.730296 AGATGAACATATTACTCCCTCCG 57.270 43.478 0.00 0.00 0.00 4.63
1134 5119 1.599606 GCGAGCTCTGAACCTCTCCA 61.600 60.000 12.85 0.00 0.00 3.86
1137 5122 0.610509 TGAGCGAGCTCTGAACCTCT 60.611 55.000 23.39 0.00 43.12 3.69
1143 5128 2.413963 GCCTCTGAGCGAGCTCTGA 61.414 63.158 25.59 25.59 44.76 3.27
1216 5201 2.340328 AACCTTTGCGGGCGGATTC 61.340 57.895 0.00 0.00 36.97 2.52
1275 5318 3.884895 TCCAAAAGATCCACGCATACAT 58.115 40.909 0.00 0.00 0.00 2.29
1316 5392 4.376210 CGTAGCATCAAACGAACCGTAAAA 60.376 41.667 0.00 0.00 39.99 1.52
1379 5455 5.991328 ATTACCACTGCATTACTGAATCG 57.009 39.130 0.00 0.00 0.00 3.34
1406 5484 5.221541 ACCTGACACAACAACTTTTTCCAAA 60.222 36.000 0.00 0.00 0.00 3.28
1407 5485 4.282195 ACCTGACACAACAACTTTTTCCAA 59.718 37.500 0.00 0.00 0.00 3.53
1408 5486 3.829601 ACCTGACACAACAACTTTTTCCA 59.170 39.130 0.00 0.00 0.00 3.53
1418 5496 1.069090 GCTCCGACCTGACACAACA 59.931 57.895 0.00 0.00 0.00 3.33
1425 5503 1.437573 CTTATGCGCTCCGACCTGA 59.562 57.895 9.73 0.00 0.00 3.86
1426 5504 2.240500 GCTTATGCGCTCCGACCTG 61.241 63.158 9.73 0.00 0.00 4.00
1427 5505 1.961180 AAGCTTATGCGCTCCGACCT 61.961 55.000 9.73 0.00 45.42 3.85
1438 5516 5.440610 AGTCCCTGGTATGAAAAGCTTATG 58.559 41.667 0.00 0.00 0.00 1.90
1444 5522 3.370953 CCCTGAGTCCCTGGTATGAAAAG 60.371 52.174 0.00 0.00 32.48 2.27
1445 5523 2.576191 CCCTGAGTCCCTGGTATGAAAA 59.424 50.000 0.00 0.00 32.48 2.29
1539 5647 7.148639 ACACACTGCACATTAGAGTATTTTACG 60.149 37.037 0.00 0.00 0.00 3.18
1560 5668 9.620660 AAAGAAAACCATCGATATTTTACACAC 57.379 29.630 15.76 6.91 0.00 3.82
1566 5674 8.658609 CAATGCAAAGAAAACCATCGATATTTT 58.341 29.630 15.73 15.73 0.00 1.82
1652 6218 3.117512 ACAGAAGTTTTGGACTCATGGGT 60.118 43.478 0.00 0.00 37.72 4.51
1683 6252 8.937634 AACTAACGGTTATACATACAGGAAAG 57.062 34.615 0.29 0.00 36.23 2.62
1716 6298 1.597742 CCAGAACAACCTGGTGTCAG 58.402 55.000 0.00 0.00 46.62 3.51
1717 6299 3.798794 CCAGAACAACCTGGTGTCA 57.201 52.632 0.00 0.00 46.62 3.58
1856 6442 4.307432 TGACAGATCGTTCAGAAAGGTTC 58.693 43.478 0.00 0.00 0.00 3.62
1870 6456 6.822676 AGACATGAGGAAATTTCTGACAGATC 59.177 38.462 17.42 14.12 0.00 2.75
2208 6799 3.023119 AGCATTTCAGTTGTGGTTGTGA 58.977 40.909 0.00 0.00 0.00 3.58
2252 6843 8.938801 ATACCAATGATATTGAACAATGCCTA 57.061 30.769 9.87 0.00 32.50 3.93
2253 6844 7.844493 ATACCAATGATATTGAACAATGCCT 57.156 32.000 9.87 0.00 32.50 4.75
2272 6863 9.778741 CAACTTAGCTTAATCTGGATAATACCA 57.221 33.333 0.00 0.00 38.33 3.25
2273 6864 9.780186 ACAACTTAGCTTAATCTGGATAATACC 57.220 33.333 0.00 0.00 0.00 2.73
2279 6870 9.113838 CACATAACAACTTAGCTTAATCTGGAT 57.886 33.333 0.00 0.00 0.00 3.41
2280 6871 8.318412 TCACATAACAACTTAGCTTAATCTGGA 58.682 33.333 0.00 0.00 0.00 3.86
2281 6872 8.391106 GTCACATAACAACTTAGCTTAATCTGG 58.609 37.037 0.00 0.00 0.00 3.86
2282 6873 8.391106 GGTCACATAACAACTTAGCTTAATCTG 58.609 37.037 0.00 0.00 0.00 2.90
2283 6874 8.100791 TGGTCACATAACAACTTAGCTTAATCT 58.899 33.333 0.00 0.00 0.00 2.40
2284 6875 8.263940 TGGTCACATAACAACTTAGCTTAATC 57.736 34.615 0.00 0.00 0.00 1.75
2285 6876 8.677300 CATGGTCACATAACAACTTAGCTTAAT 58.323 33.333 0.00 0.00 34.99 1.40
2286 6877 7.880713 TCATGGTCACATAACAACTTAGCTTAA 59.119 33.333 0.00 0.00 34.99 1.85
2287 6878 7.390823 TCATGGTCACATAACAACTTAGCTTA 58.609 34.615 0.00 0.00 34.99 3.09
2288 6879 6.237901 TCATGGTCACATAACAACTTAGCTT 58.762 36.000 0.00 0.00 34.99 3.74
2289 6880 5.804639 TCATGGTCACATAACAACTTAGCT 58.195 37.500 0.00 0.00 34.99 3.32
2290 6881 5.065218 CCTCATGGTCACATAACAACTTAGC 59.935 44.000 0.00 0.00 34.99 3.09
2291 6882 6.173339 ACCTCATGGTCACATAACAACTTAG 58.827 40.000 0.00 0.00 44.78 2.18
2292 6883 6.121776 ACCTCATGGTCACATAACAACTTA 57.878 37.500 0.00 0.00 44.78 2.24
2293 6884 4.985538 ACCTCATGGTCACATAACAACTT 58.014 39.130 0.00 0.00 44.78 2.66
2294 6885 4.640771 ACCTCATGGTCACATAACAACT 57.359 40.909 0.00 0.00 44.78 3.16
2309 6900 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2310 6901 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2311 6902 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2312 6903 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2313 6904 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2314 6905 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2315 6906 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2316 6907 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2317 6908 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2318 6909 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2319 6910 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2320 6911 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2321 6912 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2322 6913 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2323 6914 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2324 6915 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2325 6916 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2326 6917 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2327 6918 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2328 6919 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2329 6920 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2330 6921 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2342 6933 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2343 6934 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2344 6935 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2345 6936 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2346 6937 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2347 6938 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2348 6939 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2349 6940 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2350 6941 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2351 6942 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2352 6943 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2353 6944 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2354 6945 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2355 6946 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2356 6947 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2357 6948 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2358 6949 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2359 6950 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2360 6951 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2361 6952 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2362 6953 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2363 6954 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2364 6955 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2365 6956 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2366 6957 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2367 6958 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2368 6959 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2378 6969 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2379 6970 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2380 6971 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2381 6972 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2382 6973 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2383 6974 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2384 6975 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2385 6976 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2386 6977 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2387 6978 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2388 6979 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2389 6980 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2390 6981 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2391 6982 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2392 6983 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2393 6984 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2394 6985 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2395 6986 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2396 6987 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2408 6999 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2411 7002 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2412 7003 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2413 7004 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2414 7005 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2420 7011 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2421 7012 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2422 7013 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2423 7014 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2424 7015 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2446 7037 8.881743 GCAATGATATTGAACAATGCCTAAAAA 58.118 29.630 9.87 0.00 37.07 1.94
2447 7038 8.422973 GCAATGATATTGAACAATGCCTAAAA 57.577 30.769 9.87 0.00 37.07 1.52
2454 7045 4.613944 AGCGGCAATGATATTGAACAATG 58.386 39.130 1.45 0.00 32.50 2.82
2496 7087 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
2568 7159 2.026822 ACATAGAAGCTCCCACACAAGG 60.027 50.000 0.00 0.00 0.00 3.61
2593 7184 2.755103 CAATGCCTAAAAGGACAGACCC 59.245 50.000 0.00 0.00 37.67 4.46
2603 7194 8.538701 ACCAATGATATTGAACAATGCCTAAAA 58.461 29.630 9.87 0.00 32.50 1.52
2777 7369 8.251026 TCAATCTTAACACGAGAACATACAGAT 58.749 33.333 0.00 0.00 0.00 2.90
2836 7428 6.106673 TCTCTAGGAAAAGCGGATAAACTTG 58.893 40.000 0.00 0.00 0.00 3.16
2848 7440 5.418209 TCCTACCGTCTTTCTCTAGGAAAAG 59.582 44.000 10.01 10.01 42.52 2.27
3062 7656 8.049117 TGCATATGGTCTACAAGAGAAGAAAAT 58.951 33.333 4.56 0.00 35.37 1.82
3091 7685 7.814264 ATCTCTTAAGGTGCCATTCTTTATG 57.186 36.000 1.85 0.00 0.00 1.90
3092 7686 7.836183 ACAATCTCTTAAGGTGCCATTCTTTAT 59.164 33.333 1.85 0.00 0.00 1.40
3093 7687 7.175104 ACAATCTCTTAAGGTGCCATTCTTTA 58.825 34.615 1.85 0.00 0.00 1.85
3094 7688 6.012745 ACAATCTCTTAAGGTGCCATTCTTT 58.987 36.000 1.85 0.00 0.00 2.52
3095 7689 5.574188 ACAATCTCTTAAGGTGCCATTCTT 58.426 37.500 1.85 0.00 0.00 2.52
3096 7690 5.184892 ACAATCTCTTAAGGTGCCATTCT 57.815 39.130 1.85 0.00 0.00 2.40
3097 7691 5.163612 GGAACAATCTCTTAAGGTGCCATTC 60.164 44.000 1.85 1.46 0.00 2.67
3098 7692 4.706962 GGAACAATCTCTTAAGGTGCCATT 59.293 41.667 1.85 0.00 0.00 3.16
3099 7693 4.273318 GGAACAATCTCTTAAGGTGCCAT 58.727 43.478 1.85 0.00 0.00 4.40
3100 7694 3.561313 GGGAACAATCTCTTAAGGTGCCA 60.561 47.826 1.85 0.00 0.00 4.92
3101 7695 3.017442 GGGAACAATCTCTTAAGGTGCC 58.983 50.000 1.85 0.00 0.00 5.01
3102 7696 3.956744 AGGGAACAATCTCTTAAGGTGC 58.043 45.455 1.85 0.00 29.70 5.01
3151 7745 7.796054 ACACCATGGTATAGAATATGGATAGC 58.204 38.462 19.28 0.00 42.05 2.97
3197 7791 4.396166 AGGCACACAAGTATCAATAGTTGC 59.604 41.667 14.63 4.72 43.93 4.17
3468 8068 4.086457 GAGGGGTTTTCAGGATTAGCAAA 58.914 43.478 0.00 0.00 0.00 3.68
3561 8161 2.846206 TGATATCCCCAAGAGCAACAGT 59.154 45.455 0.00 0.00 0.00 3.55
3562 8162 3.565764 TGATATCCCCAAGAGCAACAG 57.434 47.619 0.00 0.00 0.00 3.16
3563 8163 3.010027 TGTTGATATCCCCAAGAGCAACA 59.990 43.478 0.00 0.00 40.07 3.33
3564 8164 3.620488 TGTTGATATCCCCAAGAGCAAC 58.380 45.455 0.00 0.00 36.38 4.17
3565 8165 4.016444 GTTGTTGATATCCCCAAGAGCAA 58.984 43.478 0.00 0.00 0.00 3.91
3566 8166 3.010027 TGTTGTTGATATCCCCAAGAGCA 59.990 43.478 0.00 0.00 0.00 4.26
3567 8167 3.620488 TGTTGTTGATATCCCCAAGAGC 58.380 45.455 0.00 0.00 0.00 4.09
3570 8170 2.689983 GGCTGTTGTTGATATCCCCAAG 59.310 50.000 0.00 0.00 0.00 3.61
3611 8217 0.811915 TTCTAGCAGCTGGAGACGAC 59.188 55.000 17.12 0.00 0.00 4.34
3628 8234 2.419324 CTCTTGCATGGAGAACTGCTTC 59.581 50.000 10.55 0.00 39.16 3.86
3653 8259 5.188434 CAGAACCCATGCTCATCTTCTTTA 58.812 41.667 0.00 0.00 0.00 1.85
3673 8279 0.322456 GCAGGGCATGTTGGTACAGA 60.322 55.000 0.00 0.00 42.39 3.41
3681 8295 1.456331 GGCTATGGCAGGGCATGTT 60.456 57.895 17.48 0.00 40.87 2.71
3782 8396 2.738521 CCCACGTCTTGCAGACCG 60.739 66.667 9.71 5.36 42.12 4.79
3787 8401 3.918253 GATGCCCCCACGTCTTGCA 62.918 63.158 1.65 1.65 36.23 4.08
3864 8478 6.038603 CACCAGTGGTTGATCGATGAAAATAT 59.961 38.462 13.62 0.00 31.02 1.28
3876 8490 2.978156 AATGGACACCAGTGGTTGAT 57.022 45.000 13.62 0.26 36.75 2.57
3922 8536 2.366266 GCACCGAATATGGGTACTACCA 59.634 50.000 7.57 0.00 46.24 3.25
3923 8537 2.366266 TGCACCGAATATGGGTACTACC 59.634 50.000 0.00 0.00 35.58 3.18
3926 8540 3.476552 CATTGCACCGAATATGGGTACT 58.523 45.455 0.00 0.00 35.58 2.73
3942 8556 6.366877 ACTGAACATTGTAATCAAAGCATTGC 59.633 34.615 0.00 0.00 37.11 3.56
3956 8570 2.951642 CAGAACCACCACTGAACATTGT 59.048 45.455 0.00 0.00 36.38 2.71
3957 8571 2.951642 ACAGAACCACCACTGAACATTG 59.048 45.455 0.00 0.00 37.54 2.82
3958 8572 3.297134 ACAGAACCACCACTGAACATT 57.703 42.857 0.00 0.00 37.54 2.71
3975 8599 0.962489 AGCGGGCTAGCACTATACAG 59.038 55.000 16.47 0.00 40.15 2.74
3991 8615 5.584649 TGTATCAAAAGGAAGAATACCAGCG 59.415 40.000 0.00 0.00 0.00 5.18
4813 9534 2.222027 CAGAACCGCTTTTCAGGAACT 58.778 47.619 0.00 0.00 43.88 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.