Multiple sequence alignment - TraesCS7B01G069000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G069000 chr7B 100.000 3547 0 0 1 3547 74352489 74356035 0.000000e+00 6551.0
1 TraesCS7B01G069000 chr7B 77.906 1815 324 55 804 2567 74345326 74347114 0.000000e+00 1059.0
2 TraesCS7B01G069000 chr7B 78.153 1126 221 23 838 1946 73683675 73684792 0.000000e+00 693.0
3 TraesCS7B01G069000 chr7B 86.905 168 17 4 278 443 636464334 636464498 2.170000e-42 183.0
4 TraesCS7B01G069000 chr7B 84.466 103 14 2 608 709 13886656 13886555 2.250000e-17 100.0
5 TraesCS7B01G069000 chr7B 84.694 98 12 2 613 709 689899810 689899905 1.050000e-15 95.3
6 TraesCS7B01G069000 chr7A 96.060 2386 78 4 874 3248 119695228 119697608 0.000000e+00 3871.0
7 TraesCS7B01G069000 chr7A 91.236 1780 127 9 874 2637 119606314 119608080 0.000000e+00 2396.0
8 TraesCS7B01G069000 chr7A 79.137 1136 216 17 804 1924 119692111 119693240 0.000000e+00 765.0
9 TraesCS7B01G069000 chr7A 79.623 1060 198 15 910 1957 119602534 119603587 0.000000e+00 745.0
10 TraesCS7B01G069000 chr7A 82.582 643 78 20 1991 2626 119698172 119698787 1.450000e-148 536.0
11 TraesCS7B01G069000 chr7A 92.131 305 17 5 3245 3547 119697757 119698056 1.180000e-114 424.0
12 TraesCS7B01G069000 chr7A 95.192 208 6 1 705 908 119606047 119606254 3.410000e-85 326.0
13 TraesCS7B01G069000 chr7A 95.192 208 6 1 705 908 119694961 119695168 3.410000e-85 326.0
14 TraesCS7B01G069000 chr7A 84.848 99 11 4 613 709 186491178 186491274 2.910000e-16 97.1
15 TraesCS7B01G069000 chr7D 90.103 1950 152 18 709 2633 114825804 114827737 0.000000e+00 2494.0
16 TraesCS7B01G069000 chr7D 77.275 1813 322 61 804 2567 114822510 114824281 0.000000e+00 983.0
17 TraesCS7B01G069000 chr7D 78.364 1137 220 23 838 1956 113984963 113986091 0.000000e+00 713.0
18 TraesCS7B01G069000 chr7D 90.811 185 15 1 1 185 566263013 566263195 2.730000e-61 246.0
19 TraesCS7B01G069000 chr7D 88.112 143 15 2 452 592 566281821 566281963 6.090000e-38 169.0
20 TraesCS7B01G069000 chrUn 96.577 409 13 1 926 1333 477642743 477642335 0.000000e+00 676.0
21 TraesCS7B01G069000 chr3A 90.753 292 22 5 422 709 506402228 506402518 5.550000e-103 385.0
22 TraesCS7B01G069000 chr3A 88.346 266 24 1 1 259 506401947 506402212 2.660000e-81 313.0
23 TraesCS7B01G069000 chr3A 84.906 106 16 0 604 709 606031707 606031812 1.350000e-19 108.0
24 TraesCS7B01G069000 chr3A 84.536 97 13 2 613 708 194227369 194227274 1.050000e-15 95.3
25 TraesCS7B01G069000 chr1D 88.000 300 32 1 1214 1513 177078151 177077856 5.630000e-93 351.0
26 TraesCS7B01G069000 chr1D 86.486 148 18 2 978 1123 177078297 177078150 1.020000e-35 161.0
27 TraesCS7B01G069000 chr1B 90.688 247 16 2 20 259 663578728 663578974 4.420000e-84 322.0
28 TraesCS7B01G069000 chr1B 86.942 291 22 9 422 709 663578990 663579267 2.660000e-81 313.0
29 TraesCS7B01G069000 chr1B 97.931 145 3 0 283 427 600394918 600394774 5.880000e-63 252.0
30 TraesCS7B01G069000 chr1B 95.973 149 5 1 280 427 489500792 489500644 1.270000e-59 241.0
31 TraesCS7B01G069000 chr6B 99.338 151 1 0 277 427 244585676 244585526 1.250000e-69 274.0
32 TraesCS7B01G069000 chr2A 96.319 163 4 2 283 444 296031733 296031894 2.100000e-67 267.0
33 TraesCS7B01G069000 chr2A 99.306 144 1 0 280 423 657112929 657113072 9.770000e-66 261.0
34 TraesCS7B01G069000 chr6A 95.333 150 7 0 280 429 188450132 188449983 4.580000e-59 239.0
35 TraesCS7B01G069000 chr5D 95.302 149 7 0 277 425 564950124 564950272 1.650000e-58 237.0
36 TraesCS7B01G069000 chr5D 95.833 144 6 0 280 423 44114897 44115040 2.130000e-57 233.0
37 TraesCS7B01G069000 chr4B 94.040 151 9 0 281 431 419584921 419584771 2.750000e-56 230.0
38 TraesCS7B01G069000 chr3D 84.259 108 15 2 604 710 164328633 164328527 1.740000e-18 104.0
39 TraesCS7B01G069000 chr4A 83.654 104 13 4 611 712 740981195 740981094 1.050000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G069000 chr7B 74352489 74356035 3546 False 6551.000000 6551 100.000000 1 3547 1 chr7B.!!$F3 3546
1 TraesCS7B01G069000 chr7B 74345326 74347114 1788 False 1059.000000 1059 77.906000 804 2567 1 chr7B.!!$F2 1763
2 TraesCS7B01G069000 chr7B 73683675 73684792 1117 False 693.000000 693 78.153000 838 1946 1 chr7B.!!$F1 1108
3 TraesCS7B01G069000 chr7A 119692111 119698787 6676 False 1184.400000 3871 89.020400 705 3547 5 chr7A.!!$F3 2842
4 TraesCS7B01G069000 chr7A 119602534 119608080 5546 False 1155.666667 2396 88.683667 705 2637 3 chr7A.!!$F2 1932
5 TraesCS7B01G069000 chr7D 114822510 114827737 5227 False 1738.500000 2494 83.689000 709 2633 2 chr7D.!!$F4 1924
6 TraesCS7B01G069000 chr7D 113984963 113986091 1128 False 713.000000 713 78.364000 838 1956 1 chr7D.!!$F1 1118
7 TraesCS7B01G069000 chr3A 506401947 506402518 571 False 349.000000 385 89.549500 1 709 2 chr3A.!!$F2 708
8 TraesCS7B01G069000 chr1B 663578728 663579267 539 False 317.500000 322 88.815000 20 709 2 chr1B.!!$F1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 342 0.031817 ATTGGAGGGGATTGGCAAGG 60.032 55.0 5.96 0.00 0.00 3.61 F
427 435 0.037734 AACCGAACAAGGCCTTAGGG 59.962 55.0 20.00 18.24 33.69 3.53 F
429 437 0.107654 CCGAACAAGGCCTTAGGGAG 60.108 60.0 20.00 8.06 33.58 4.30 F
431 439 0.621082 GAACAAGGCCTTAGGGAGCT 59.379 55.0 20.00 0.00 33.58 4.09 F
1686 6077 0.736325 ATGAACTGACGGTAGCACGC 60.736 55.0 0.00 0.00 37.37 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 5843 0.038526 CGTCTAACAGCTCAACCGGT 60.039 55.000 0.00 0.0 0.00 5.28 R
1769 6160 1.066143 ACAGACGCCCATAGAACAAGG 60.066 52.381 0.00 0.0 0.00 3.61 R
1794 6185 2.301346 GGAGTATGCCCAAGGTCAATG 58.699 52.381 0.00 0.0 0.00 2.82 R
2186 6595 3.620488 TCAAGTTGTGCAAAGAGAAGGT 58.380 40.909 2.11 0.0 0.00 3.50 R
3131 7551 0.108992 CATGCGCACAAGCCAAGAAT 60.109 50.000 14.90 0.0 37.52 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.596477 GCAGGATCTCACCGATGGC 60.596 63.158 0.00 0.00 30.84 4.40
177 178 0.823460 CAGAGAGGAGGACAAGAGGC 59.177 60.000 0.00 0.00 0.00 4.70
213 221 4.925861 GGGAGCAGCGAGGATGGC 62.926 72.222 0.00 0.00 41.64 4.40
251 259 0.321034 TCGTCTCCCGAGTCGAGAAA 60.321 55.000 15.64 0.00 42.23 2.52
259 267 2.287909 CCCGAGTCGAGAAAGGATGATC 60.288 54.545 15.64 0.00 0.00 2.92
260 268 2.287909 CCGAGTCGAGAAAGGATGATCC 60.288 54.545 15.64 2.46 36.58 3.36
261 269 2.359214 CGAGTCGAGAAAGGATGATCCA 59.641 50.000 14.90 0.00 39.61 3.41
262 270 3.712187 GAGTCGAGAAAGGATGATCCAC 58.288 50.000 14.90 4.83 39.61 4.02
264 272 3.383185 AGTCGAGAAAGGATGATCCACTC 59.617 47.826 14.90 16.34 39.61 3.51
266 274 3.131223 TCGAGAAAGGATGATCCACTCAC 59.869 47.826 22.66 13.51 39.61 3.51
267 275 3.452474 GAGAAAGGATGATCCACTCACG 58.548 50.000 14.90 0.00 39.61 4.35
268 276 3.099905 AGAAAGGATGATCCACTCACGA 58.900 45.455 14.90 0.00 39.61 4.35
269 277 3.515502 AGAAAGGATGATCCACTCACGAA 59.484 43.478 14.90 0.00 39.61 3.85
270 278 2.969628 AGGATGATCCACTCACGAAC 57.030 50.000 14.90 0.00 39.61 3.95
271 279 1.482593 AGGATGATCCACTCACGAACC 59.517 52.381 14.90 0.00 39.61 3.62
272 280 1.560923 GATGATCCACTCACGAACCG 58.439 55.000 0.00 0.00 36.48 4.44
273 281 0.895530 ATGATCCACTCACGAACCGT 59.104 50.000 0.00 0.00 42.36 4.83
274 282 0.242825 TGATCCACTCACGAACCGTC 59.757 55.000 0.00 0.00 38.32 4.79
286 294 3.600898 AACCGTCACCGCTTAGGGC 62.601 63.158 0.00 0.00 46.96 5.19
287 295 3.771160 CCGTCACCGCTTAGGGCT 61.771 66.667 0.00 0.00 46.96 5.19
288 296 2.264794 CGTCACCGCTTAGGGCTT 59.735 61.111 0.00 0.00 46.96 4.35
289 297 2.100631 CGTCACCGCTTAGGGCTTG 61.101 63.158 0.00 0.00 46.96 4.01
292 300 0.321298 TCACCGCTTAGGGCTTGTTC 60.321 55.000 0.00 0.00 46.96 3.18
293 301 1.375523 ACCGCTTAGGGCTTGTTCG 60.376 57.895 0.00 0.00 46.96 3.95
294 302 2.106683 CCGCTTAGGGCTTGTTCGG 61.107 63.158 0.00 0.00 39.13 4.30
295 303 1.375523 CGCTTAGGGCTTGTTCGGT 60.376 57.895 0.00 0.00 39.13 4.69
296 304 0.953960 CGCTTAGGGCTTGTTCGGTT 60.954 55.000 0.00 0.00 39.13 4.44
297 305 1.673626 CGCTTAGGGCTTGTTCGGTTA 60.674 52.381 0.00 0.00 39.13 2.85
298 306 2.429478 GCTTAGGGCTTGTTCGGTTAA 58.571 47.619 0.00 0.00 38.06 2.01
299 307 3.014623 GCTTAGGGCTTGTTCGGTTAAT 58.985 45.455 0.00 0.00 38.06 1.40
300 308 3.064958 GCTTAGGGCTTGTTCGGTTAATC 59.935 47.826 0.00 0.00 38.06 1.75
301 309 2.124277 AGGGCTTGTTCGGTTAATCC 57.876 50.000 0.00 0.00 0.00 3.01
302 310 1.633945 AGGGCTTGTTCGGTTAATCCT 59.366 47.619 0.00 0.00 0.00 3.24
303 311 2.014857 GGGCTTGTTCGGTTAATCCTC 58.985 52.381 0.00 0.00 0.00 3.71
304 312 2.014857 GGCTTGTTCGGTTAATCCTCC 58.985 52.381 0.00 0.00 0.00 4.30
305 313 2.355818 GGCTTGTTCGGTTAATCCTCCT 60.356 50.000 0.00 0.00 0.00 3.69
306 314 3.344515 GCTTGTTCGGTTAATCCTCCTT 58.655 45.455 0.00 0.00 0.00 3.36
307 315 3.374367 GCTTGTTCGGTTAATCCTCCTTC 59.626 47.826 0.00 0.00 0.00 3.46
308 316 3.622166 TGTTCGGTTAATCCTCCTTCC 57.378 47.619 0.00 0.00 0.00 3.46
309 317 2.907696 TGTTCGGTTAATCCTCCTTCCA 59.092 45.455 0.00 0.00 0.00 3.53
310 318 3.328343 TGTTCGGTTAATCCTCCTTCCAA 59.672 43.478 0.00 0.00 0.00 3.53
311 319 3.906720 TCGGTTAATCCTCCTTCCAAG 57.093 47.619 0.00 0.00 0.00 3.61
312 320 3.446968 TCGGTTAATCCTCCTTCCAAGA 58.553 45.455 0.00 0.00 0.00 3.02
313 321 3.451178 TCGGTTAATCCTCCTTCCAAGAG 59.549 47.826 0.00 0.00 0.00 2.85
324 332 3.027533 TCCAAGAGGATTGGAGGGG 57.972 57.895 5.24 0.00 43.17 4.79
325 333 0.421495 TCCAAGAGGATTGGAGGGGA 59.579 55.000 5.24 0.00 43.17 4.81
326 334 1.011293 TCCAAGAGGATTGGAGGGGAT 59.989 52.381 5.24 0.00 43.17 3.85
327 335 1.855599 CCAAGAGGATTGGAGGGGATT 59.144 52.381 0.12 0.00 42.06 3.01
328 336 2.423947 CCAAGAGGATTGGAGGGGATTG 60.424 54.545 0.12 0.00 42.06 2.67
329 337 1.527457 AGAGGATTGGAGGGGATTGG 58.473 55.000 0.00 0.00 0.00 3.16
330 338 0.178978 GAGGATTGGAGGGGATTGGC 60.179 60.000 0.00 0.00 0.00 4.52
331 339 0.925720 AGGATTGGAGGGGATTGGCA 60.926 55.000 0.00 0.00 0.00 4.92
332 340 0.032217 GGATTGGAGGGGATTGGCAA 60.032 55.000 0.68 0.68 0.00 4.52
333 341 1.406903 GATTGGAGGGGATTGGCAAG 58.593 55.000 5.96 0.00 0.00 4.01
334 342 0.031817 ATTGGAGGGGATTGGCAAGG 60.032 55.000 5.96 0.00 0.00 3.61
335 343 1.145900 TTGGAGGGGATTGGCAAGGA 61.146 55.000 5.96 0.00 0.00 3.36
336 344 0.925720 TGGAGGGGATTGGCAAGGAT 60.926 55.000 5.96 0.00 0.00 3.24
337 345 0.262876 GGAGGGGATTGGCAAGGATT 59.737 55.000 5.96 0.00 0.00 3.01
374 382 9.901172 TTGACTTATAAGAGGTTTAAATCTCCC 57.099 33.333 22.20 4.77 36.82 4.30
375 383 9.280456 TGACTTATAAGAGGTTTAAATCTCCCT 57.720 33.333 22.20 13.66 36.82 4.20
376 384 9.767228 GACTTATAAGAGGTTTAAATCTCCCTC 57.233 37.037 22.20 17.06 43.14 4.30
377 385 9.280456 ACTTATAAGAGGTTTAAATCTCCCTCA 57.720 33.333 22.20 7.84 44.85 3.86
380 388 8.809468 ATAAGAGGTTTAAATCTCCCTCAAAC 57.191 34.615 22.20 0.00 44.85 2.93
381 389 5.571285 AGAGGTTTAAATCTCCCTCAAACC 58.429 41.667 22.20 2.75 44.85 3.27
382 390 4.673968 AGGTTTAAATCTCCCTCAAACCC 58.326 43.478 10.14 0.00 46.02 4.11
383 391 3.767673 GGTTTAAATCTCCCTCAAACCCC 59.232 47.826 3.66 0.00 41.38 4.95
384 392 4.510386 GGTTTAAATCTCCCTCAAACCCCT 60.510 45.833 3.66 0.00 41.38 4.79
385 393 5.084519 GTTTAAATCTCCCTCAAACCCCTT 58.915 41.667 0.00 0.00 0.00 3.95
386 394 3.458044 AAATCTCCCTCAAACCCCTTC 57.542 47.619 0.00 0.00 0.00 3.46
387 395 2.059756 ATCTCCCTCAAACCCCTTCA 57.940 50.000 0.00 0.00 0.00 3.02
388 396 1.827792 TCTCCCTCAAACCCCTTCAA 58.172 50.000 0.00 0.00 0.00 2.69
389 397 2.358258 TCTCCCTCAAACCCCTTCAAT 58.642 47.619 0.00 0.00 0.00 2.57
390 398 2.308866 TCTCCCTCAAACCCCTTCAATC 59.691 50.000 0.00 0.00 0.00 2.67
391 399 1.357761 TCCCTCAAACCCCTTCAATCC 59.642 52.381 0.00 0.00 0.00 3.01
392 400 1.619704 CCCTCAAACCCCTTCAATCCC 60.620 57.143 0.00 0.00 0.00 3.85
393 401 1.619704 CCTCAAACCCCTTCAATCCCC 60.620 57.143 0.00 0.00 0.00 4.81
394 402 1.359130 CTCAAACCCCTTCAATCCCCT 59.641 52.381 0.00 0.00 0.00 4.79
395 403 1.357761 TCAAACCCCTTCAATCCCCTC 59.642 52.381 0.00 0.00 0.00 4.30
396 404 0.331616 AAACCCCTTCAATCCCCTCG 59.668 55.000 0.00 0.00 0.00 4.63
397 405 1.571773 AACCCCTTCAATCCCCTCGG 61.572 60.000 0.00 0.00 0.00 4.63
398 406 1.692749 CCCCTTCAATCCCCTCGGA 60.693 63.158 0.00 0.00 44.33 4.55
406 414 2.456627 ATCCCCTCGGATCCACATG 58.543 57.895 13.41 0.00 46.77 3.21
407 415 1.772819 ATCCCCTCGGATCCACATGC 61.773 60.000 13.41 0.00 46.77 4.06
408 416 2.745308 CCCCTCGGATCCACATGCA 61.745 63.158 13.41 0.00 0.00 3.96
409 417 1.224315 CCCTCGGATCCACATGCAA 59.776 57.895 13.41 0.00 0.00 4.08
410 418 1.097547 CCCTCGGATCCACATGCAAC 61.098 60.000 13.41 0.00 0.00 4.17
411 419 1.097547 CCTCGGATCCACATGCAACC 61.098 60.000 13.41 0.00 0.00 3.77
412 420 1.431488 CTCGGATCCACATGCAACCG 61.431 60.000 13.41 0.00 41.39 4.44
413 421 1.449423 CGGATCCACATGCAACCGA 60.449 57.895 13.41 0.00 42.40 4.69
414 422 1.024046 CGGATCCACATGCAACCGAA 61.024 55.000 13.41 0.00 42.40 4.30
415 423 0.451783 GGATCCACATGCAACCGAAC 59.548 55.000 6.95 0.00 0.00 3.95
416 424 1.164411 GATCCACATGCAACCGAACA 58.836 50.000 0.00 0.00 0.00 3.18
417 425 1.539388 GATCCACATGCAACCGAACAA 59.461 47.619 0.00 0.00 0.00 2.83
418 426 0.950836 TCCACATGCAACCGAACAAG 59.049 50.000 0.00 0.00 0.00 3.16
419 427 0.039256 CCACATGCAACCGAACAAGG 60.039 55.000 0.00 0.00 37.30 3.61
420 428 0.664166 CACATGCAACCGAACAAGGC 60.664 55.000 0.00 0.00 33.69 4.35
421 429 1.080569 CATGCAACCGAACAAGGCC 60.081 57.895 0.00 0.00 33.69 5.19
422 430 1.228552 ATGCAACCGAACAAGGCCT 60.229 52.632 0.00 0.00 33.69 5.19
423 431 0.827507 ATGCAACCGAACAAGGCCTT 60.828 50.000 13.78 13.78 33.69 4.35
424 432 0.179015 TGCAACCGAACAAGGCCTTA 60.179 50.000 20.00 0.00 33.69 2.69
425 433 0.521735 GCAACCGAACAAGGCCTTAG 59.478 55.000 20.00 15.05 33.69 2.18
426 434 1.165270 CAACCGAACAAGGCCTTAGG 58.835 55.000 20.00 20.25 33.69 2.69
427 435 0.037734 AACCGAACAAGGCCTTAGGG 59.962 55.000 20.00 18.24 33.69 3.53
428 436 0.838987 ACCGAACAAGGCCTTAGGGA 60.839 55.000 20.00 0.00 33.69 4.20
429 437 0.107654 CCGAACAAGGCCTTAGGGAG 60.108 60.000 20.00 8.06 33.58 4.30
430 438 0.744771 CGAACAAGGCCTTAGGGAGC 60.745 60.000 20.00 3.88 33.58 4.70
431 439 0.621082 GAACAAGGCCTTAGGGAGCT 59.379 55.000 20.00 0.00 33.58 4.09
432 440 1.004862 GAACAAGGCCTTAGGGAGCTT 59.995 52.381 20.00 2.85 33.58 3.74
433 441 1.076438 ACAAGGCCTTAGGGAGCTTT 58.924 50.000 20.00 0.00 33.58 3.51
434 442 1.467920 CAAGGCCTTAGGGAGCTTTG 58.532 55.000 20.00 0.00 39.30 2.77
435 443 1.004745 CAAGGCCTTAGGGAGCTTTGA 59.995 52.381 20.00 0.00 45.85 2.69
436 444 0.621082 AGGCCTTAGGGAGCTTTGAC 59.379 55.000 0.00 0.00 33.58 3.18
437 445 0.744771 GGCCTTAGGGAGCTTTGACG 60.745 60.000 0.00 0.00 33.58 4.35
444 452 2.291043 GGAGCTTTGACGAGGGGGA 61.291 63.158 0.00 0.00 0.00 4.81
447 455 1.153147 GCTTTGACGAGGGGGATCC 60.153 63.158 1.92 1.92 0.00 3.36
451 459 0.976073 TTGACGAGGGGGATCCACTC 60.976 60.000 15.23 18.36 38.24 3.51
458 466 1.221021 GGGGATCCACTCACGAACC 59.779 63.158 15.23 0.00 0.00 3.62
527 536 1.826340 GCCGGTTCTTTGGCCCAATT 61.826 55.000 1.90 0.00 45.73 2.32
531 540 2.560981 CGGTTCTTTGGCCCAATTAACT 59.439 45.455 16.53 0.00 0.00 2.24
562 571 2.784380 CGATTTTTCTCTCGGAGTAGCG 59.216 50.000 4.69 0.00 0.00 4.26
580 590 3.201595 TCCCCAGGACAGTAGGCT 58.798 61.111 0.00 0.00 0.00 4.58
605 615 3.276091 CGCCAAAGGTGACGCACA 61.276 61.111 11.20 0.00 35.86 4.57
674 684 2.096268 CAGAAACGCAAATCGCTGAGAA 60.096 45.455 0.00 0.00 43.23 2.87
709 719 4.989168 GGCTCGGTTATACTGTCCTTAATG 59.011 45.833 0.00 0.00 0.00 1.90
710 720 5.452917 GGCTCGGTTATACTGTCCTTAATGT 60.453 44.000 0.00 0.00 0.00 2.71
711 721 6.239120 GGCTCGGTTATACTGTCCTTAATGTA 60.239 42.308 0.00 0.00 0.00 2.29
712 722 6.862090 GCTCGGTTATACTGTCCTTAATGTAG 59.138 42.308 0.00 0.00 0.00 2.74
713 723 7.469732 GCTCGGTTATACTGTCCTTAATGTAGT 60.470 40.741 0.00 0.00 0.00 2.73
714 724 8.978874 TCGGTTATACTGTCCTTAATGTAGTA 57.021 34.615 0.00 0.00 0.00 1.82
715 725 9.407380 TCGGTTATACTGTCCTTAATGTAGTAA 57.593 33.333 0.00 0.00 0.00 2.24
739 749 8.710835 AAAATTTAACAAAAGTGACATTCCGT 57.289 26.923 0.00 0.00 0.00 4.69
740 750 8.710835 AAATTTAACAAAAGTGACATTCCGTT 57.289 26.923 0.00 0.00 0.00 4.44
741 751 8.710835 AATTTAACAAAAGTGACATTCCGTTT 57.289 26.923 0.00 0.00 0.00 3.60
742 752 8.710835 ATTTAACAAAAGTGACATTCCGTTTT 57.289 26.923 0.00 0.00 0.00 2.43
743 753 9.804758 ATTTAACAAAAGTGACATTCCGTTTTA 57.195 25.926 0.00 0.00 0.00 1.52
744 754 9.804758 TTTAACAAAAGTGACATTCCGTTTTAT 57.195 25.926 0.00 0.00 0.00 1.40
747 757 8.161699 ACAAAAGTGACATTCCGTTTTATAGT 57.838 30.769 0.00 0.00 0.00 2.12
748 758 8.626526 ACAAAAGTGACATTCCGTTTTATAGTT 58.373 29.630 0.00 0.00 0.00 2.24
749 759 9.113876 CAAAAGTGACATTCCGTTTTATAGTTC 57.886 33.333 0.00 0.00 0.00 3.01
750 760 8.617290 AAAGTGACATTCCGTTTTATAGTTCT 57.383 30.769 0.00 0.00 0.00 3.01
751 761 7.596749 AGTGACATTCCGTTTTATAGTTCTG 57.403 36.000 0.00 0.00 0.00 3.02
752 762 6.092259 AGTGACATTCCGTTTTATAGTTCTGC 59.908 38.462 0.00 0.00 0.00 4.26
753 763 6.092259 GTGACATTCCGTTTTATAGTTCTGCT 59.908 38.462 0.00 0.00 0.00 4.24
754 764 7.277098 GTGACATTCCGTTTTATAGTTCTGCTA 59.723 37.037 0.00 0.00 0.00 3.49
755 765 7.491372 TGACATTCCGTTTTATAGTTCTGCTAG 59.509 37.037 0.00 0.00 32.45 3.42
756 766 7.553334 ACATTCCGTTTTATAGTTCTGCTAGA 58.447 34.615 0.00 0.00 32.45 2.43
757 767 8.038944 ACATTCCGTTTTATAGTTCTGCTAGAA 58.961 33.333 0.00 0.00 32.45 2.10
758 768 8.879759 CATTCCGTTTTATAGTTCTGCTAGAAA 58.120 33.333 0.00 0.00 38.61 2.52
759 769 9.614792 ATTCCGTTTTATAGTTCTGCTAGAAAT 57.385 29.630 0.00 4.70 39.65 2.17
761 771 9.745880 TCCGTTTTATAGTTCTGCTAGAAATAG 57.254 33.333 0.00 0.00 38.05 1.73
762 772 9.745880 CCGTTTTATAGTTCTGCTAGAAATAGA 57.254 33.333 0.00 5.07 38.05 1.98
766 776 9.973450 TTTATAGTTCTGCTAGAAATAGAGCTG 57.027 33.333 0.00 0.00 38.05 4.24
767 777 5.275067 AGTTCTGCTAGAAATAGAGCTGG 57.725 43.478 0.00 0.00 35.75 4.85
768 778 4.714308 AGTTCTGCTAGAAATAGAGCTGGT 59.286 41.667 0.00 0.00 35.75 4.00
769 779 5.188751 AGTTCTGCTAGAAATAGAGCTGGTT 59.811 40.000 0.00 0.00 35.75 3.67
770 780 5.683876 TCTGCTAGAAATAGAGCTGGTTT 57.316 39.130 0.00 0.00 0.00 3.27
771 781 6.791867 TCTGCTAGAAATAGAGCTGGTTTA 57.208 37.500 0.00 0.00 0.00 2.01
772 782 7.366847 TCTGCTAGAAATAGAGCTGGTTTAT 57.633 36.000 0.00 0.00 0.00 1.40
773 783 7.796054 TCTGCTAGAAATAGAGCTGGTTTATT 58.204 34.615 0.00 0.00 0.00 1.40
774 784 8.267894 TCTGCTAGAAATAGAGCTGGTTTATTT 58.732 33.333 13.21 13.21 31.58 1.40
775 785 8.213518 TGCTAGAAATAGAGCTGGTTTATTTG 57.786 34.615 16.88 7.04 29.67 2.32
776 786 7.829211 TGCTAGAAATAGAGCTGGTTTATTTGT 59.171 33.333 16.88 15.38 29.67 2.83
777 787 8.338986 GCTAGAAATAGAGCTGGTTTATTTGTC 58.661 37.037 16.88 6.83 29.67 3.18
778 788 9.383519 CTAGAAATAGAGCTGGTTTATTTGTCA 57.616 33.333 16.88 4.66 29.67 3.58
779 789 8.635765 AGAAATAGAGCTGGTTTATTTGTCAA 57.364 30.769 16.88 0.00 29.67 3.18
780 790 8.734386 AGAAATAGAGCTGGTTTATTTGTCAAG 58.266 33.333 16.88 0.00 29.67 3.02
781 791 7.396540 AATAGAGCTGGTTTATTTGTCAAGG 57.603 36.000 0.00 0.00 0.00 3.61
782 792 4.985538 AGAGCTGGTTTATTTGTCAAGGA 58.014 39.130 0.00 0.00 0.00 3.36
783 793 5.385198 AGAGCTGGTTTATTTGTCAAGGAA 58.615 37.500 0.00 0.00 0.00 3.36
784 794 5.833131 AGAGCTGGTTTATTTGTCAAGGAAA 59.167 36.000 0.00 0.00 0.00 3.13
785 795 6.323739 AGAGCTGGTTTATTTGTCAAGGAAAA 59.676 34.615 0.00 0.00 0.00 2.29
786 796 6.515832 AGCTGGTTTATTTGTCAAGGAAAAG 58.484 36.000 0.00 0.00 0.00 2.27
787 797 6.098266 AGCTGGTTTATTTGTCAAGGAAAAGT 59.902 34.615 0.00 0.00 0.00 2.66
788 798 6.761242 GCTGGTTTATTTGTCAAGGAAAAGTT 59.239 34.615 0.00 0.00 0.00 2.66
789 799 7.279981 GCTGGTTTATTTGTCAAGGAAAAGTTT 59.720 33.333 0.00 0.00 0.00 2.66
790 800 9.810545 CTGGTTTATTTGTCAAGGAAAAGTTTA 57.189 29.630 0.00 0.00 0.00 2.01
791 801 9.589111 TGGTTTATTTGTCAAGGAAAAGTTTAC 57.411 29.630 0.00 0.00 0.00 2.01
792 802 9.589111 GGTTTATTTGTCAAGGAAAAGTTTACA 57.411 29.630 0.00 0.00 0.00 2.41
826 836 5.838531 AAAAACACAACTTTATGGACCGA 57.161 34.783 0.00 0.00 0.00 4.69
827 837 4.823790 AAACACAACTTTATGGACCGAC 57.176 40.909 0.00 0.00 0.00 4.79
834 844 5.011329 ACAACTTTATGGACCGACTGTTCTA 59.989 40.000 0.00 0.00 0.00 2.10
835 845 5.934402 ACTTTATGGACCGACTGTTCTAT 57.066 39.130 0.00 0.00 0.00 1.98
836 846 5.903810 ACTTTATGGACCGACTGTTCTATC 58.096 41.667 0.00 0.00 0.00 2.08
837 847 5.657302 ACTTTATGGACCGACTGTTCTATCT 59.343 40.000 0.00 0.00 0.00 1.98
838 848 5.515797 TTATGGACCGACTGTTCTATCTG 57.484 43.478 0.00 0.00 0.00 2.90
839 849 2.100197 TGGACCGACTGTTCTATCTGG 58.900 52.381 0.00 0.00 0.00 3.86
840 850 2.100989 GGACCGACTGTTCTATCTGGT 58.899 52.381 0.00 0.00 0.00 4.00
924 5314 0.895100 TGTGTTCTGGCCTTCCATGC 60.895 55.000 3.32 0.00 42.51 4.06
981 5372 7.453034 CATCATTTGTGTGCAGAATCAAAATC 58.547 34.615 4.13 0.00 34.32 2.17
1001 5392 1.656652 GGCAGCGATCTAACACACAT 58.343 50.000 0.00 0.00 0.00 3.21
1054 5445 5.699458 GGACCAGTCATTAAGAAAACGAGAA 59.301 40.000 0.00 0.00 0.00 2.87
1099 5490 2.288091 CCTGATGATCTGCTGTCTACGG 60.288 54.545 0.00 0.00 0.00 4.02
1116 5507 3.757745 ACGGTTCTATCAAAATTGCCG 57.242 42.857 0.00 0.00 43.05 5.69
1119 5510 3.311322 CGGTTCTATCAAAATTGCCGCTA 59.689 43.478 0.00 0.00 0.00 4.26
1197 5588 2.238521 TGCCCCAAACTGAGATTTGAC 58.761 47.619 8.42 1.30 41.28 3.18
1272 5663 8.385111 CAGAAATTCATTGACAATGTTAATGCC 58.615 33.333 23.98 13.63 38.72 4.40
1311 5702 1.160137 GCATGGTCGTTGAAGAGCTT 58.840 50.000 0.00 0.00 39.21 3.74
1421 5812 1.747355 CCTTGATTTAGTGCCAGCCAG 59.253 52.381 0.00 0.00 0.00 4.85
1452 5843 4.202121 GGCCGAACTGATCAGTACAGATTA 60.202 45.833 28.10 0.00 41.58 1.75
1477 5868 3.430929 GGTTGAGCTGTTAGACGATGGAT 60.431 47.826 0.00 0.00 0.00 3.41
1515 5906 2.923655 TCATCTTCAACTTAGCTTCGCG 59.076 45.455 0.00 0.00 0.00 5.87
1579 5970 4.398988 TGAGAACACTTGATTTGCACTTGT 59.601 37.500 0.00 0.00 0.00 3.16
1583 5974 4.597079 ACACTTGATTTGCACTTGTTACG 58.403 39.130 0.00 0.00 0.00 3.18
1686 6077 0.736325 ATGAACTGACGGTAGCACGC 60.736 55.000 0.00 0.00 37.37 5.34
1794 6185 1.629043 TCTATGGGCGTCTGTATCCC 58.371 55.000 0.00 0.00 40.47 3.85
2186 6595 7.119407 GCATGTGAGTATACTCCTATCTCGTAA 59.881 40.741 26.37 4.52 42.20 3.18
2209 6619 4.646492 ACCTTCTCTTTGCACAACTTGATT 59.354 37.500 0.00 0.00 0.00 2.57
2466 6876 2.347322 GGAGCTGACTCGAGTGGCT 61.347 63.158 30.40 30.40 44.48 4.75
2516 6926 6.295039 AGATTTACTTTGAAGTTTCGCGAA 57.705 33.333 19.38 19.38 40.37 4.70
2517 6927 6.721321 AGATTTACTTTGAAGTTTCGCGAAA 58.279 32.000 29.22 29.22 40.37 3.46
2527 6937 3.399330 AGTTTCGCGAAAATTGGAGAGA 58.601 40.909 33.69 7.17 31.33 3.10
2598 7008 2.179427 AGTGTGCCAGACATGTAGCTA 58.821 47.619 14.09 0.00 36.78 3.32
2735 7155 6.976934 TTTTACTCTCCAATTTTCTTGGCT 57.023 33.333 0.00 0.00 39.38 4.75
2747 7167 7.173562 CCAATTTTCTTGGCTCAAATCATTTCA 59.826 33.333 0.00 0.00 32.18 2.69
2756 7176 7.495901 TGGCTCAAATCATTTCACAACTTAAA 58.504 30.769 0.00 0.00 0.00 1.52
2775 7195 8.936070 ACTTAAAATTTGTTGTCCACTTAACC 57.064 30.769 0.00 0.00 0.00 2.85
2776 7196 8.532819 ACTTAAAATTTGTTGTCCACTTAACCA 58.467 29.630 0.00 0.00 0.00 3.67
2814 7234 2.414559 GGATTTGCGTTGTCATGTCTGG 60.415 50.000 0.00 0.00 0.00 3.86
2891 7311 1.742761 AAACTCATGAGGCGGACATG 58.257 50.000 26.08 13.23 44.20 3.21
2893 7313 0.176680 ACTCATGAGGCGGACATGTC 59.823 55.000 26.08 17.91 43.56 3.06
2905 7325 3.003689 GCGGACATGTCAATAATCTTGGG 59.996 47.826 26.47 2.86 0.00 4.12
2915 7335 4.634004 TCAATAATCTTGGGCTTGTACGTG 59.366 41.667 0.00 0.00 0.00 4.49
2942 7362 0.331954 TCCTCCTCTGTCGGTAAGCT 59.668 55.000 0.00 0.00 0.00 3.74
2994 7414 1.340893 ATGTTTCCCATGATGGCGACA 60.341 47.619 5.79 10.23 37.24 4.35
3046 7466 3.817647 ACTGGTGAAACTTCTTGCTGATC 59.182 43.478 0.00 0.00 36.74 2.92
3059 7479 1.964290 GCTGATCGCAGTGTGCAGAC 61.964 60.000 5.72 5.72 45.36 3.51
3084 7504 3.038280 TCCAGGTGAGTCAACTCTTTCA 58.962 45.455 8.02 0.00 43.25 2.69
3100 7520 7.673641 ACTCTTTCATCTATCATTCTCTGGT 57.326 36.000 0.00 0.00 0.00 4.00
3110 7530 4.553330 TCATTCTCTGGTTGAGTTACCC 57.447 45.455 0.00 0.00 43.13 3.69
3121 7541 4.453478 GGTTGAGTTACCCTTTAGTTTCCG 59.547 45.833 0.00 0.00 31.71 4.30
3128 7548 3.344515 ACCCTTTAGTTTCCGCTTGATC 58.655 45.455 0.00 0.00 0.00 2.92
3130 7550 4.010349 CCCTTTAGTTTCCGCTTGATCTT 58.990 43.478 0.00 0.00 0.00 2.40
3131 7551 5.183228 CCCTTTAGTTTCCGCTTGATCTTA 58.817 41.667 0.00 0.00 0.00 2.10
3153 7573 0.452987 CTTGGCTTGTGCGCATGTAT 59.547 50.000 15.91 0.00 40.82 2.29
3178 7598 5.292345 GTGGTTACGGCTTTTGATTTTTGTT 59.708 36.000 0.00 0.00 0.00 2.83
3179 7599 5.875359 TGGTTACGGCTTTTGATTTTTGTTT 59.125 32.000 0.00 0.00 0.00 2.83
3186 7606 6.098679 GGCTTTTGATTTTTGTTTGGCTTTT 58.901 32.000 0.00 0.00 0.00 2.27
3199 7619 9.835389 TTTGTTTGGCTTTTAAGTACTAGTAGA 57.165 29.630 1.87 0.00 0.00 2.59
3305 7877 5.047802 ACACAAGAAAAATGGTCATAGCAGG 60.048 40.000 0.00 0.00 0.00 4.85
3389 7961 9.708092 AGAAAGAACAGGTATAGTACTTTCAAC 57.292 33.333 0.00 0.00 41.93 3.18
3390 7962 9.485206 GAAAGAACAGGTATAGTACTTTCAACA 57.515 33.333 0.00 0.00 40.37 3.33
3391 7963 9.841295 AAAGAACAGGTATAGTACTTTCAACAA 57.159 29.630 0.00 0.00 0.00 2.83
3392 7964 9.490379 AAGAACAGGTATAGTACTTTCAACAAG 57.510 33.333 0.00 0.00 0.00 3.16
3393 7965 8.648693 AGAACAGGTATAGTACTTTCAACAAGT 58.351 33.333 0.00 0.00 0.00 3.16
3394 7966 8.828688 AACAGGTATAGTACTTTCAACAAGTC 57.171 34.615 0.00 0.00 0.00 3.01
3395 7967 7.088905 ACAGGTATAGTACTTTCAACAAGTCG 58.911 38.462 0.00 0.00 0.00 4.18
3396 7968 7.088905 CAGGTATAGTACTTTCAACAAGTCGT 58.911 38.462 0.00 0.00 0.00 4.34
3397 7969 7.597743 CAGGTATAGTACTTTCAACAAGTCGTT 59.402 37.037 0.00 0.00 38.83 3.85
3398 7970 8.146412 AGGTATAGTACTTTCAACAAGTCGTTT 58.854 33.333 0.00 0.00 34.86 3.60
3399 7971 9.410556 GGTATAGTACTTTCAACAAGTCGTTTA 57.589 33.333 0.00 0.00 34.86 2.01
3401 7973 8.876275 ATAGTACTTTCAACAAGTCGTTTACA 57.124 30.769 0.00 0.00 34.86 2.41
3402 7974 7.781548 AGTACTTTCAACAAGTCGTTTACAT 57.218 32.000 0.00 0.00 34.86 2.29
3422 7994 6.648725 ACATTACTTTCAGCAAGTCGTATC 57.351 37.500 0.00 0.00 42.62 2.24
3458 8051 4.082125 CCTTCATTGCTAAACCAGGAAGT 58.918 43.478 0.00 0.00 38.08 3.01
3479 8072 1.970917 GCTCGATCCTGGCAAACACG 61.971 60.000 0.00 0.00 0.00 4.49
3509 8102 7.711846 ACACAGCACAATAAAATCAACAAGTA 58.288 30.769 0.00 0.00 0.00 2.24
3513 8106 9.848172 CAGCACAATAAAATCAACAAGTAAAAC 57.152 29.630 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 0.968393 GTCGCCTCTTGTCCTCCTCT 60.968 60.000 0.00 0.00 0.00 3.69
186 187 0.179000 CGCTGCTCCCCTCAAGTATT 59.821 55.000 0.00 0.00 0.00 1.89
221 229 2.338984 GAGACGAACCTGTGGCGT 59.661 61.111 0.00 0.00 41.45 5.68
251 259 1.482593 GGTTCGTGAGTGGATCATCCT 59.517 52.381 4.96 0.00 40.92 3.24
259 267 1.663702 GGTGACGGTTCGTGAGTGG 60.664 63.158 0.00 0.00 41.37 4.00
260 268 3.932289 GGTGACGGTTCGTGAGTG 58.068 61.111 0.00 0.00 41.37 3.51
286 294 3.939592 GGAAGGAGGATTAACCGAACAAG 59.060 47.826 0.00 0.00 44.74 3.16
287 295 3.328343 TGGAAGGAGGATTAACCGAACAA 59.672 43.478 0.00 0.00 44.74 2.83
288 296 2.907696 TGGAAGGAGGATTAACCGAACA 59.092 45.455 0.00 0.00 44.74 3.18
289 297 3.622166 TGGAAGGAGGATTAACCGAAC 57.378 47.619 0.00 0.00 44.74 3.95
292 300 3.798202 CTCTTGGAAGGAGGATTAACCG 58.202 50.000 0.00 0.00 44.74 4.44
303 311 1.213926 CCCTCCAATCCTCTTGGAAGG 59.786 57.143 7.14 7.14 46.85 3.46
304 312 1.213926 CCCCTCCAATCCTCTTGGAAG 59.786 57.143 7.98 2.43 46.85 3.46
305 313 1.203557 TCCCCTCCAATCCTCTTGGAA 60.204 52.381 7.98 0.00 46.85 3.53
307 315 1.527457 ATCCCCTCCAATCCTCTTGG 58.473 55.000 0.00 0.00 40.87 3.61
308 316 2.423947 CCAATCCCCTCCAATCCTCTTG 60.424 54.545 0.00 0.00 0.00 3.02
309 317 1.855599 CCAATCCCCTCCAATCCTCTT 59.144 52.381 0.00 0.00 0.00 2.85
310 318 1.527457 CCAATCCCCTCCAATCCTCT 58.473 55.000 0.00 0.00 0.00 3.69
311 319 0.178978 GCCAATCCCCTCCAATCCTC 60.179 60.000 0.00 0.00 0.00 3.71
312 320 0.925720 TGCCAATCCCCTCCAATCCT 60.926 55.000 0.00 0.00 0.00 3.24
313 321 0.032217 TTGCCAATCCCCTCCAATCC 60.032 55.000 0.00 0.00 0.00 3.01
314 322 1.406903 CTTGCCAATCCCCTCCAATC 58.593 55.000 0.00 0.00 0.00 2.67
315 323 0.031817 CCTTGCCAATCCCCTCCAAT 60.032 55.000 0.00 0.00 0.00 3.16
316 324 1.145900 TCCTTGCCAATCCCCTCCAA 61.146 55.000 0.00 0.00 0.00 3.53
317 325 0.925720 ATCCTTGCCAATCCCCTCCA 60.926 55.000 0.00 0.00 0.00 3.86
318 326 0.262876 AATCCTTGCCAATCCCCTCC 59.737 55.000 0.00 0.00 0.00 4.30
319 327 1.063717 TCAATCCTTGCCAATCCCCTC 60.064 52.381 0.00 0.00 0.00 4.30
320 328 1.009997 TCAATCCTTGCCAATCCCCT 58.990 50.000 0.00 0.00 0.00 4.79
321 329 1.063717 TCTCAATCCTTGCCAATCCCC 60.064 52.381 0.00 0.00 0.00 4.81
322 330 2.442236 TCTCAATCCTTGCCAATCCC 57.558 50.000 0.00 0.00 0.00 3.85
323 331 3.294214 ACATCTCAATCCTTGCCAATCC 58.706 45.455 0.00 0.00 0.00 3.01
324 332 6.645790 AATACATCTCAATCCTTGCCAATC 57.354 37.500 0.00 0.00 0.00 2.67
325 333 7.124599 TCAAAATACATCTCAATCCTTGCCAAT 59.875 33.333 0.00 0.00 0.00 3.16
326 334 6.436847 TCAAAATACATCTCAATCCTTGCCAA 59.563 34.615 0.00 0.00 0.00 4.52
327 335 5.951148 TCAAAATACATCTCAATCCTTGCCA 59.049 36.000 0.00 0.00 0.00 4.92
328 336 6.096001 AGTCAAAATACATCTCAATCCTTGCC 59.904 38.462 0.00 0.00 0.00 4.52
329 337 7.093322 AGTCAAAATACATCTCAATCCTTGC 57.907 36.000 0.00 0.00 0.00 4.01
348 356 9.901172 GGGAGATTTAAACCTCTTATAAGTCAA 57.099 33.333 9.49 0.00 0.00 3.18
349 357 9.280456 AGGGAGATTTAAACCTCTTATAAGTCA 57.720 33.333 9.49 0.00 0.00 3.41
350 358 9.767228 GAGGGAGATTTAAACCTCTTATAAGTC 57.233 37.037 9.49 0.00 44.74 3.01
359 367 4.705507 GGGTTTGAGGGAGATTTAAACCTC 59.294 45.833 13.24 13.24 45.86 3.85
360 368 4.510386 GGGGTTTGAGGGAGATTTAAACCT 60.510 45.833 14.54 0.00 45.86 3.50
361 369 3.767673 GGGGTTTGAGGGAGATTTAAACC 59.232 47.826 0.00 0.00 45.86 3.27
362 370 4.673968 AGGGGTTTGAGGGAGATTTAAAC 58.326 43.478 0.00 0.00 0.00 2.01
363 371 5.162925 TGAAGGGGTTTGAGGGAGATTTAAA 60.163 40.000 0.00 0.00 0.00 1.52
364 372 4.355588 TGAAGGGGTTTGAGGGAGATTTAA 59.644 41.667 0.00 0.00 0.00 1.52
365 373 3.920197 TGAAGGGGTTTGAGGGAGATTTA 59.080 43.478 0.00 0.00 0.00 1.40
366 374 2.721906 TGAAGGGGTTTGAGGGAGATTT 59.278 45.455 0.00 0.00 0.00 2.17
367 375 2.358258 TGAAGGGGTTTGAGGGAGATT 58.642 47.619 0.00 0.00 0.00 2.40
368 376 2.059756 TGAAGGGGTTTGAGGGAGAT 57.940 50.000 0.00 0.00 0.00 2.75
369 377 1.827792 TTGAAGGGGTTTGAGGGAGA 58.172 50.000 0.00 0.00 0.00 3.71
370 378 2.621668 GGATTGAAGGGGTTTGAGGGAG 60.622 54.545 0.00 0.00 0.00 4.30
371 379 1.357761 GGATTGAAGGGGTTTGAGGGA 59.642 52.381 0.00 0.00 0.00 4.20
372 380 1.619704 GGGATTGAAGGGGTTTGAGGG 60.620 57.143 0.00 0.00 0.00 4.30
373 381 1.619704 GGGGATTGAAGGGGTTTGAGG 60.620 57.143 0.00 0.00 0.00 3.86
374 382 1.359130 AGGGGATTGAAGGGGTTTGAG 59.641 52.381 0.00 0.00 0.00 3.02
375 383 1.357761 GAGGGGATTGAAGGGGTTTGA 59.642 52.381 0.00 0.00 0.00 2.69
376 384 1.852633 GAGGGGATTGAAGGGGTTTG 58.147 55.000 0.00 0.00 0.00 2.93
377 385 0.331616 CGAGGGGATTGAAGGGGTTT 59.668 55.000 0.00 0.00 0.00 3.27
378 386 1.571773 CCGAGGGGATTGAAGGGGTT 61.572 60.000 0.00 0.00 34.06 4.11
379 387 2.001269 CCGAGGGGATTGAAGGGGT 61.001 63.158 0.00 0.00 34.06 4.95
380 388 1.692749 TCCGAGGGGATTGAAGGGG 60.693 63.158 0.00 0.00 37.43 4.79
381 389 4.066614 TCCGAGGGGATTGAAGGG 57.933 61.111 0.00 0.00 37.43 3.95
390 398 2.111878 GCATGTGGATCCGAGGGG 59.888 66.667 7.39 0.00 0.00 4.79
391 399 1.097547 GTTGCATGTGGATCCGAGGG 61.098 60.000 7.39 0.00 0.00 4.30
392 400 1.097547 GGTTGCATGTGGATCCGAGG 61.098 60.000 7.39 0.00 0.00 4.63
393 401 2.397751 GGTTGCATGTGGATCCGAG 58.602 57.895 7.39 0.00 0.00 4.63
394 402 4.635769 GGTTGCATGTGGATCCGA 57.364 55.556 7.39 0.00 0.00 4.55
395 403 1.024046 TTCGGTTGCATGTGGATCCG 61.024 55.000 15.21 15.21 45.94 4.18
396 404 0.451783 GTTCGGTTGCATGTGGATCC 59.548 55.000 4.20 4.20 0.00 3.36
397 405 1.164411 TGTTCGGTTGCATGTGGATC 58.836 50.000 0.00 0.00 0.00 3.36
398 406 1.541147 CTTGTTCGGTTGCATGTGGAT 59.459 47.619 0.00 0.00 0.00 3.41
399 407 0.950836 CTTGTTCGGTTGCATGTGGA 59.049 50.000 0.00 0.00 0.00 4.02
400 408 0.039256 CCTTGTTCGGTTGCATGTGG 60.039 55.000 0.00 0.00 0.00 4.17
401 409 0.664166 GCCTTGTTCGGTTGCATGTG 60.664 55.000 0.00 0.00 0.00 3.21
402 410 1.659794 GCCTTGTTCGGTTGCATGT 59.340 52.632 0.00 0.00 0.00 3.21
403 411 1.080569 GGCCTTGTTCGGTTGCATG 60.081 57.895 0.00 0.00 0.00 4.06
404 412 0.827507 AAGGCCTTGTTCGGTTGCAT 60.828 50.000 19.73 0.00 0.00 3.96
405 413 0.179015 TAAGGCCTTGTTCGGTTGCA 60.179 50.000 28.77 0.00 0.00 4.08
406 414 0.521735 CTAAGGCCTTGTTCGGTTGC 59.478 55.000 28.77 0.00 0.00 4.17
407 415 1.165270 CCTAAGGCCTTGTTCGGTTG 58.835 55.000 28.77 0.10 0.00 3.77
408 416 0.037734 CCCTAAGGCCTTGTTCGGTT 59.962 55.000 28.77 0.57 0.00 4.44
409 417 0.838987 TCCCTAAGGCCTTGTTCGGT 60.839 55.000 28.77 1.45 0.00 4.69
410 418 0.107654 CTCCCTAAGGCCTTGTTCGG 60.108 60.000 28.77 20.30 0.00 4.30
411 419 0.744771 GCTCCCTAAGGCCTTGTTCG 60.745 60.000 28.77 12.30 0.00 3.95
412 420 0.621082 AGCTCCCTAAGGCCTTGTTC 59.379 55.000 28.77 10.55 0.00 3.18
413 421 1.076438 AAGCTCCCTAAGGCCTTGTT 58.924 50.000 28.77 5.73 0.00 2.83
414 422 1.076438 AAAGCTCCCTAAGGCCTTGT 58.924 50.000 28.77 4.97 0.00 3.16
415 423 1.004745 TCAAAGCTCCCTAAGGCCTTG 59.995 52.381 28.77 16.94 0.00 3.61
416 424 1.004862 GTCAAAGCTCCCTAAGGCCTT 59.995 52.381 24.18 24.18 0.00 4.35
417 425 0.621082 GTCAAAGCTCCCTAAGGCCT 59.379 55.000 0.00 0.00 0.00 5.19
418 426 0.744771 CGTCAAAGCTCCCTAAGGCC 60.745 60.000 0.00 0.00 0.00 5.19
419 427 0.249398 TCGTCAAAGCTCCCTAAGGC 59.751 55.000 0.00 0.00 0.00 4.35
420 428 1.134670 CCTCGTCAAAGCTCCCTAAGG 60.135 57.143 0.00 0.00 0.00 2.69
421 429 1.134670 CCCTCGTCAAAGCTCCCTAAG 60.135 57.143 0.00 0.00 0.00 2.18
422 430 0.902531 CCCTCGTCAAAGCTCCCTAA 59.097 55.000 0.00 0.00 0.00 2.69
423 431 0.976073 CCCCTCGTCAAAGCTCCCTA 60.976 60.000 0.00 0.00 0.00 3.53
424 432 2.294078 CCCCTCGTCAAAGCTCCCT 61.294 63.158 0.00 0.00 0.00 4.20
425 433 2.269241 CCCCTCGTCAAAGCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
426 434 1.627297 ATCCCCCTCGTCAAAGCTCC 61.627 60.000 0.00 0.00 0.00 4.70
427 435 0.179070 GATCCCCCTCGTCAAAGCTC 60.179 60.000 0.00 0.00 0.00 4.09
428 436 1.627297 GGATCCCCCTCGTCAAAGCT 61.627 60.000 0.00 0.00 0.00 3.74
429 437 1.153147 GGATCCCCCTCGTCAAAGC 60.153 63.158 0.00 0.00 0.00 3.51
430 438 0.107654 GTGGATCCCCCTCGTCAAAG 60.108 60.000 9.90 0.00 35.38 2.77
431 439 0.546747 AGTGGATCCCCCTCGTCAAA 60.547 55.000 9.90 0.00 35.38 2.69
432 440 0.976073 GAGTGGATCCCCCTCGTCAA 60.976 60.000 9.90 0.00 35.38 3.18
433 441 1.381327 GAGTGGATCCCCCTCGTCA 60.381 63.158 9.90 0.00 35.38 4.35
434 442 1.381327 TGAGTGGATCCCCCTCGTC 60.381 63.158 18.62 5.09 34.47 4.20
435 443 1.686110 GTGAGTGGATCCCCCTCGT 60.686 63.158 18.62 0.00 34.47 4.18
436 444 2.786495 CGTGAGTGGATCCCCCTCG 61.786 68.421 18.62 12.25 34.47 4.63
437 445 0.976073 TTCGTGAGTGGATCCCCCTC 60.976 60.000 17.59 17.59 35.38 4.30
444 452 0.038526 GTGACGGTTCGTGAGTGGAT 60.039 55.000 0.00 0.00 41.37 3.41
447 455 0.594602 TAGGTGACGGTTCGTGAGTG 59.405 55.000 0.00 0.00 41.37 3.51
451 459 1.080298 GGGTAGGTGACGGTTCGTG 60.080 63.158 0.00 0.00 41.37 4.35
458 466 2.277591 TTCCCGTGGGTAGGTGACG 61.278 63.158 4.53 0.00 36.47 4.35
485 493 3.306641 CCATCAGGAAGCATAGTAGAGCC 60.307 52.174 0.00 0.00 36.89 4.70
527 536 7.159372 AGAGAAAAATCGCTGGTTTCTAGTTA 58.841 34.615 0.00 0.00 40.73 2.24
531 540 4.625742 CGAGAGAAAAATCGCTGGTTTCTA 59.374 41.667 0.00 0.00 40.73 2.10
580 590 0.181587 TCACCTTTGGCGTTTCCTGA 59.818 50.000 0.00 0.00 35.26 3.86
605 615 1.134280 CCTGGCCGTCAGATTTGATCT 60.134 52.381 0.18 0.00 46.18 2.75
713 723 9.804758 ACGGAATGTCACTTTTGTTAAATTTTA 57.195 25.926 0.00 0.00 0.00 1.52
714 724 8.710835 ACGGAATGTCACTTTTGTTAAATTTT 57.289 26.923 0.00 0.00 0.00 1.82
715 725 8.710835 AACGGAATGTCACTTTTGTTAAATTT 57.289 26.923 0.00 0.00 0.00 1.82
716 726 8.710835 AAACGGAATGTCACTTTTGTTAAATT 57.289 26.923 0.00 0.00 0.00 1.82
717 727 8.710835 AAAACGGAATGTCACTTTTGTTAAAT 57.289 26.923 0.00 0.00 0.00 1.40
718 728 9.804758 ATAAAACGGAATGTCACTTTTGTTAAA 57.195 25.926 0.00 0.00 0.00 1.52
721 731 8.626526 ACTATAAAACGGAATGTCACTTTTGTT 58.373 29.630 0.00 0.00 0.00 2.83
722 732 8.161699 ACTATAAAACGGAATGTCACTTTTGT 57.838 30.769 0.00 0.00 0.00 2.83
723 733 9.113876 GAACTATAAAACGGAATGTCACTTTTG 57.886 33.333 0.00 0.00 0.00 2.44
724 734 9.063615 AGAACTATAAAACGGAATGTCACTTTT 57.936 29.630 0.00 0.00 0.00 2.27
725 735 8.504005 CAGAACTATAAAACGGAATGTCACTTT 58.496 33.333 0.00 0.00 0.00 2.66
726 736 7.360946 GCAGAACTATAAAACGGAATGTCACTT 60.361 37.037 0.00 0.00 0.00 3.16
727 737 6.092259 GCAGAACTATAAAACGGAATGTCACT 59.908 38.462 0.00 0.00 0.00 3.41
728 738 6.092259 AGCAGAACTATAAAACGGAATGTCAC 59.908 38.462 0.00 0.00 0.00 3.67
729 739 6.170506 AGCAGAACTATAAAACGGAATGTCA 58.829 36.000 0.00 0.00 0.00 3.58
730 740 6.663944 AGCAGAACTATAAAACGGAATGTC 57.336 37.500 0.00 0.00 0.00 3.06
731 741 7.553334 TCTAGCAGAACTATAAAACGGAATGT 58.447 34.615 0.00 0.00 0.00 2.71
732 742 8.420374 TTCTAGCAGAACTATAAAACGGAATG 57.580 34.615 0.00 0.00 0.00 2.67
733 743 9.614792 ATTTCTAGCAGAACTATAAAACGGAAT 57.385 29.630 0.00 0.00 33.26 3.01
735 745 9.745880 CTATTTCTAGCAGAACTATAAAACGGA 57.254 33.333 0.00 0.00 33.26 4.69
736 746 9.745880 TCTATTTCTAGCAGAACTATAAAACGG 57.254 33.333 0.00 0.00 33.26 4.44
740 750 9.973450 CAGCTCTATTTCTAGCAGAACTATAAA 57.027 33.333 0.00 0.00 41.32 1.40
741 751 8.580720 CCAGCTCTATTTCTAGCAGAACTATAA 58.419 37.037 0.00 0.00 41.32 0.98
742 752 7.726291 ACCAGCTCTATTTCTAGCAGAACTATA 59.274 37.037 0.00 0.00 41.32 1.31
743 753 6.553100 ACCAGCTCTATTTCTAGCAGAACTAT 59.447 38.462 0.00 0.00 41.32 2.12
744 754 5.894393 ACCAGCTCTATTTCTAGCAGAACTA 59.106 40.000 0.00 0.00 41.32 2.24
745 755 4.714308 ACCAGCTCTATTTCTAGCAGAACT 59.286 41.667 0.00 0.00 41.32 3.01
746 756 5.017294 ACCAGCTCTATTTCTAGCAGAAC 57.983 43.478 0.00 0.00 41.32 3.01
747 757 5.683876 AACCAGCTCTATTTCTAGCAGAA 57.316 39.130 0.00 0.00 41.32 3.02
748 758 5.683876 AAACCAGCTCTATTTCTAGCAGA 57.316 39.130 0.00 0.00 41.32 4.26
749 759 8.341173 CAAATAAACCAGCTCTATTTCTAGCAG 58.659 37.037 0.00 0.00 41.32 4.24
750 760 7.829211 ACAAATAAACCAGCTCTATTTCTAGCA 59.171 33.333 0.00 0.00 41.32 3.49
751 761 8.214721 ACAAATAAACCAGCTCTATTTCTAGC 57.785 34.615 0.00 0.00 39.08 3.42
752 762 9.383519 TGACAAATAAACCAGCTCTATTTCTAG 57.616 33.333 0.00 0.00 0.00 2.43
753 763 9.733556 TTGACAAATAAACCAGCTCTATTTCTA 57.266 29.630 0.00 0.00 0.00 2.10
754 764 8.635765 TTGACAAATAAACCAGCTCTATTTCT 57.364 30.769 0.00 0.00 0.00 2.52
755 765 7.970614 CCTTGACAAATAAACCAGCTCTATTTC 59.029 37.037 0.00 0.00 0.00 2.17
756 766 7.669722 TCCTTGACAAATAAACCAGCTCTATTT 59.330 33.333 0.00 0.00 0.00 1.40
757 767 7.175104 TCCTTGACAAATAAACCAGCTCTATT 58.825 34.615 0.00 0.00 0.00 1.73
758 768 6.721318 TCCTTGACAAATAAACCAGCTCTAT 58.279 36.000 0.00 0.00 0.00 1.98
759 769 6.121776 TCCTTGACAAATAAACCAGCTCTA 57.878 37.500 0.00 0.00 0.00 2.43
760 770 4.985538 TCCTTGACAAATAAACCAGCTCT 58.014 39.130 0.00 0.00 0.00 4.09
761 771 5.705609 TTCCTTGACAAATAAACCAGCTC 57.294 39.130 0.00 0.00 0.00 4.09
762 772 6.098266 ACTTTTCCTTGACAAATAAACCAGCT 59.902 34.615 0.00 0.00 0.00 4.24
763 773 6.280643 ACTTTTCCTTGACAAATAAACCAGC 58.719 36.000 0.00 0.00 0.00 4.85
764 774 8.716646 AAACTTTTCCTTGACAAATAAACCAG 57.283 30.769 0.00 0.00 0.00 4.00
765 775 9.589111 GTAAACTTTTCCTTGACAAATAAACCA 57.411 29.630 0.00 0.00 0.00 3.67
766 776 9.589111 TGTAAACTTTTCCTTGACAAATAAACC 57.411 29.630 0.00 0.00 0.00 3.27
804 814 5.358725 AGTCGGTCCATAAAGTTGTGTTTTT 59.641 36.000 0.00 0.00 0.00 1.94
805 815 4.885325 AGTCGGTCCATAAAGTTGTGTTTT 59.115 37.500 0.00 0.00 0.00 2.43
806 816 4.274950 CAGTCGGTCCATAAAGTTGTGTTT 59.725 41.667 0.00 0.00 0.00 2.83
807 817 3.813166 CAGTCGGTCCATAAAGTTGTGTT 59.187 43.478 0.00 0.00 0.00 3.32
808 818 3.181458 ACAGTCGGTCCATAAAGTTGTGT 60.181 43.478 0.00 0.00 0.00 3.72
809 819 3.399330 ACAGTCGGTCCATAAAGTTGTG 58.601 45.455 0.00 0.00 0.00 3.33
820 830 2.100989 ACCAGATAGAACAGTCGGTCC 58.899 52.381 0.00 0.00 0.00 4.46
823 833 5.508153 CCTCATAACCAGATAGAACAGTCGG 60.508 48.000 0.00 0.00 0.00 4.79
824 834 5.508153 CCCTCATAACCAGATAGAACAGTCG 60.508 48.000 0.00 0.00 0.00 4.18
826 836 5.529289 TCCCTCATAACCAGATAGAACAGT 58.471 41.667 0.00 0.00 0.00 3.55
827 837 6.678568 ATCCCTCATAACCAGATAGAACAG 57.321 41.667 0.00 0.00 0.00 3.16
834 844 8.013667 AGTTTCTACTATCCCTCATAACCAGAT 58.986 37.037 0.00 0.00 31.21 2.90
835 845 7.363031 AGTTTCTACTATCCCTCATAACCAGA 58.637 38.462 0.00 0.00 31.21 3.86
836 846 7.604657 AGTTTCTACTATCCCTCATAACCAG 57.395 40.000 0.00 0.00 31.21 4.00
837 847 8.508601 TCTAGTTTCTACTATCCCTCATAACCA 58.491 37.037 0.00 0.00 36.32 3.67
838 848 8.937207 TCTAGTTTCTACTATCCCTCATAACC 57.063 38.462 0.00 0.00 36.32 2.85
839 849 9.796180 TCTCTAGTTTCTACTATCCCTCATAAC 57.204 37.037 0.00 0.00 36.32 1.89
924 5314 2.921634 TGACAGATCGAGGAAACGAG 57.078 50.000 0.00 0.00 45.22 4.18
981 5372 0.735978 TGTGTGTTAGATCGCTGCCG 60.736 55.000 0.00 0.00 0.00 5.69
1001 5392 5.305585 AGTAACGCCTCATTCTTTTTCTCA 58.694 37.500 0.00 0.00 0.00 3.27
1054 5445 2.427095 GGTCTGCAAACTGAACCTTTGT 59.573 45.455 0.00 0.00 32.18 2.83
1099 5490 5.743872 CCTTTAGCGGCAATTTTGATAGAAC 59.256 40.000 1.45 0.00 0.00 3.01
1116 5507 2.095008 GGTTCTTGCAGCTTCCTTTAGC 60.095 50.000 0.00 0.00 41.53 3.09
1119 5510 0.954452 CGGTTCTTGCAGCTTCCTTT 59.046 50.000 0.00 0.00 0.00 3.11
1162 5553 1.620822 GGGCAAACTCTCCACACATT 58.379 50.000 0.00 0.00 0.00 2.71
1164 5555 1.150536 GGGGCAAACTCTCCACACA 59.849 57.895 0.00 0.00 0.00 3.72
1197 5588 1.889105 ACTGCACACTGTGAAGCCG 60.889 57.895 16.21 15.44 42.67 5.52
1434 5825 4.710375 ACCGGTAATCTGTACTGATCAGTT 59.290 41.667 32.14 16.26 42.54 3.16
1452 5843 0.038526 CGTCTAACAGCTCAACCGGT 60.039 55.000 0.00 0.00 0.00 5.28
1477 5868 2.017138 TGACGAAGCCGAAATATGCA 57.983 45.000 0.00 0.00 39.50 3.96
1515 5906 1.975680 TGAGGGGGTAGTTCAAGACAC 59.024 52.381 0.00 0.00 0.00 3.67
1583 5974 6.096036 TCTTGAAGATCATTTCGAGTGACTC 58.904 40.000 1.65 1.65 38.93 3.36
1686 6077 2.185004 ATCTCAGGTTTGACAACGGG 57.815 50.000 0.00 0.00 33.13 5.28
1769 6160 1.066143 ACAGACGCCCATAGAACAAGG 60.066 52.381 0.00 0.00 0.00 3.61
1794 6185 2.301346 GGAGTATGCCCAAGGTCAATG 58.699 52.381 0.00 0.00 0.00 2.82
1841 6232 4.636206 GCTCAACAGTTAACAGGGAATAGG 59.364 45.833 8.61 0.00 0.00 2.57
2186 6595 3.620488 TCAAGTTGTGCAAAGAGAAGGT 58.380 40.909 2.11 0.00 0.00 3.50
2209 6619 5.221028 GGCACAATTCATGGTTCGATAATCA 60.221 40.000 0.00 0.00 0.00 2.57
2466 6876 5.869649 TTCCCTTCATTATCGAGATCACA 57.130 39.130 0.00 0.00 0.00 3.58
2516 6926 7.124750 CCCATGAAGGTATTTTCTCTCCAATTT 59.875 37.037 0.00 0.00 34.66 1.82
2517 6927 6.608808 CCCATGAAGGTATTTTCTCTCCAATT 59.391 38.462 0.00 0.00 34.66 2.32
2527 6937 8.704668 GGTGAAATTATCCCATGAAGGTATTTT 58.295 33.333 0.00 0.00 34.66 1.82
2598 7008 2.162681 GCCCATTGCTTGTACAAGAGT 58.837 47.619 34.43 18.17 40.79 3.24
2718 7138 5.539574 TGATTTGAGCCAAGAAAATTGGAGA 59.460 36.000 10.76 0.00 42.06 3.71
2756 7176 9.320352 GTTAATTGGTTAAGTGGACAACAAATT 57.680 29.630 5.43 5.43 40.04 1.82
2814 7234 5.919755 TGGTTTAGTTTTGTTGGGAAATCC 58.080 37.500 0.00 0.00 0.00 3.01
2867 7287 0.443869 CCGCCTCATGAGTTTTGTCG 59.556 55.000 21.11 12.97 0.00 4.35
2891 7311 4.634443 ACGTACAAGCCCAAGATTATTGAC 59.366 41.667 0.00 0.00 0.00 3.18
2893 7313 4.394920 ACACGTACAAGCCCAAGATTATTG 59.605 41.667 0.00 0.00 0.00 1.90
2905 7325 4.329256 GGAGGATCTAAAACACGTACAAGC 59.671 45.833 0.00 0.00 33.73 4.01
2915 7335 3.447944 ACCGACAGAGGAGGATCTAAAAC 59.552 47.826 0.00 0.00 33.73 2.43
2942 7362 3.760035 GGTCGAAGCCTCGGAGCA 61.760 66.667 4.63 0.00 45.49 4.26
2994 7414 0.745845 GACGTTGCATCTGCCATCCT 60.746 55.000 0.00 0.00 41.18 3.24
2996 7416 1.349627 CGACGTTGCATCTGCCATC 59.650 57.895 0.00 0.00 41.18 3.51
3023 7443 3.620488 TCAGCAAGAAGTTTCACCAGTT 58.380 40.909 0.00 0.00 0.00 3.16
3059 7479 1.001406 GAGTTGACTCACCTGGACAGG 59.999 57.143 16.55 16.55 42.69 4.00
3100 7520 4.067192 GCGGAAACTAAAGGGTAACTCAA 58.933 43.478 0.00 0.00 0.00 3.02
3110 7530 8.202745 AGAATAAGATCAAGCGGAAACTAAAG 57.797 34.615 0.00 0.00 0.00 1.85
3121 7541 5.338365 CACAAGCCAAGAATAAGATCAAGC 58.662 41.667 0.00 0.00 0.00 4.01
3128 7548 1.199789 TGCGCACAAGCCAAGAATAAG 59.800 47.619 5.66 0.00 37.52 1.73
3130 7550 1.132834 CATGCGCACAAGCCAAGAATA 59.867 47.619 14.90 0.00 37.52 1.75
3131 7551 0.108992 CATGCGCACAAGCCAAGAAT 60.109 50.000 14.90 0.00 37.52 2.40
3153 7573 4.657436 AAAATCAAAAGCCGTAACCACA 57.343 36.364 0.00 0.00 0.00 4.17
3178 7598 9.705103 TCCTATCTACTAGTACTTAAAAGCCAA 57.295 33.333 0.00 0.00 0.00 4.52
3179 7599 9.705103 TTCCTATCTACTAGTACTTAAAAGCCA 57.295 33.333 0.00 0.00 0.00 4.75
3186 7606 5.636965 CGCGCTTCCTATCTACTAGTACTTA 59.363 44.000 5.56 0.00 0.00 2.24
3197 7617 1.066587 GACAGCGCGCTTCCTATCT 59.933 57.895 34.58 4.76 0.00 1.98
3198 7618 1.951631 GGACAGCGCGCTTCCTATC 60.952 63.158 34.89 25.66 0.00 2.08
3199 7619 2.107141 GGACAGCGCGCTTCCTAT 59.893 61.111 34.89 21.02 0.00 2.57
3266 7838 6.844696 TTCTTGTGTGTTAGAGCAAAGTAG 57.155 37.500 0.00 0.00 0.00 2.57
3377 7949 8.876275 ATGTAAACGACTTGTTGAAAGTACTA 57.124 30.769 0.00 0.00 40.84 1.82
3380 7952 9.316730 AGTAATGTAAACGACTTGTTGAAAGTA 57.683 29.630 0.00 0.00 40.84 2.24
3381 7953 8.205131 AGTAATGTAAACGACTTGTTGAAAGT 57.795 30.769 0.00 0.00 40.84 2.66
3382 7954 9.498307 AAAGTAATGTAAACGACTTGTTGAAAG 57.502 29.630 0.00 0.00 40.84 2.62
3383 7955 9.493206 GAAAGTAATGTAAACGACTTGTTGAAA 57.507 29.630 0.00 0.00 40.84 2.69
3384 7956 8.666573 TGAAAGTAATGTAAACGACTTGTTGAA 58.333 29.630 0.00 0.00 40.84 2.69
3385 7957 8.199176 TGAAAGTAATGTAAACGACTTGTTGA 57.801 30.769 0.00 0.00 40.84 3.18
3386 7958 7.111593 GCTGAAAGTAATGTAAACGACTTGTTG 59.888 37.037 0.00 0.00 37.25 3.33
3387 7959 7.130269 GCTGAAAGTAATGTAAACGACTTGTT 58.870 34.615 0.00 0.00 38.47 2.83
3388 7960 6.259167 TGCTGAAAGTAATGTAAACGACTTGT 59.741 34.615 0.00 0.00 35.30 3.16
3389 7961 6.655062 TGCTGAAAGTAATGTAAACGACTTG 58.345 36.000 0.00 0.00 35.30 3.16
3390 7962 6.854496 TGCTGAAAGTAATGTAAACGACTT 57.146 33.333 0.00 0.00 35.30 3.01
3391 7963 6.854496 TTGCTGAAAGTAATGTAAACGACT 57.146 33.333 0.00 0.00 32.09 4.18
3422 7994 5.053145 GCAATGAAGGATACAGTAGTCAGG 58.947 45.833 0.00 0.00 41.41 3.86
3458 8051 1.447838 GTTTGCCAGGATCGAGCGA 60.448 57.895 0.00 0.00 0.00 4.93
3479 8072 5.448438 TGATTTTATTGTGCTGTGTTCGTC 58.552 37.500 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.