Multiple sequence alignment - TraesCS7B01G068900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G068900 chr7B 100.000 3711 0 0 1 3711 74344506 74348216 0.000000e+00 6854
1 TraesCS7B01G068900 chr7B 83.190 1398 215 18 623 2008 73683438 73684827 0.000000e+00 1262
2 TraesCS7B01G068900 chr7B 77.906 1815 324 55 821 2609 74353292 74355055 0.000000e+00 1059
3 TraesCS7B01G068900 chr7B 86.299 708 78 11 2030 2726 73684889 73685588 0.000000e+00 752
4 TraesCS7B01G068900 chr7B 78.163 577 98 18 3 563 73682451 73683015 3.550000e-90 342
5 TraesCS7B01G068900 chr7B 80.374 428 66 13 2027 2449 74356148 74356562 3.600000e-80 309
6 TraesCS7B01G068900 chr7D 96.489 3304 83 9 1 3295 114821690 114824969 0.000000e+00 5428
7 TraesCS7B01G068900 chr7D 84.218 1394 200 18 634 2016 113984741 113986125 0.000000e+00 1338
8 TraesCS7B01G068900 chr7D 82.072 1467 223 30 1054 2501 114826112 114827557 0.000000e+00 1216
9 TraesCS7B01G068900 chr7D 86.080 704 84 10 2030 2726 113986188 113986884 0.000000e+00 745
10 TraesCS7B01G068900 chr7D 83.051 295 15 14 3452 3711 114824967 114825261 6.200000e-58 235
11 TraesCS7B01G068900 chr7A 95.862 2006 66 5 1 2004 119691297 119693287 0.000000e+00 3229
12 TraesCS7B01G068900 chr7A 96.620 1154 38 1 872 2025 119602475 119603627 0.000000e+00 1914
13 TraesCS7B01G068900 chr7A 94.397 1178 57 6 2016 3189 119603672 119604844 0.000000e+00 1801
14 TraesCS7B01G068900 chr7A 94.653 879 31 5 1 876 119593063 119593928 0.000000e+00 1349
15 TraesCS7B01G068900 chr7A 84.057 1405 203 20 623 2016 119127746 119129140 0.000000e+00 1334
16 TraesCS7B01G068900 chr7A 80.592 1587 252 39 931 2501 119606350 119607896 0.000000e+00 1173
17 TraesCS7B01G068900 chr7A 78.731 1702 294 44 931 2609 119695264 119696920 0.000000e+00 1075
18 TraesCS7B01G068900 chr7A 96.945 622 18 1 2016 2636 119693592 119694213 0.000000e+00 1042
19 TraesCS7B01G068900 chr7A 85.431 707 86 12 2030 2726 119129203 119129902 0.000000e+00 719
20 TraesCS7B01G068900 chr7A 82.773 238 33 8 2788 3021 185196735 185196968 4.860000e-49 206
21 TraesCS7B01G068900 chr7A 88.623 167 13 5 3452 3612 119605198 119605364 8.130000e-47 198
22 TraesCS7B01G068900 chr7A 78.175 252 46 7 2778 3024 134620942 134620695 6.420000e-33 152
23 TraesCS7B01G068900 chr7A 93.243 74 5 0 3187 3260 119605107 119605180 3.920000e-20 110
24 TraesCS7B01G068900 chr1B 95.652 161 7 0 3294 3454 18681877 18682037 3.680000e-65 259
25 TraesCS7B01G068900 chr1B 92.090 177 13 1 3286 3461 681454541 681454717 7.960000e-62 248
26 TraesCS7B01G068900 chr1B 92.169 166 13 0 3292 3457 499946666 499946501 6.200000e-58 235
27 TraesCS7B01G068900 chr1B 89.674 184 14 5 3275 3454 605929303 605929121 2.880000e-56 230
28 TraesCS7B01G068900 chr6B 92.982 171 12 0 3286 3456 184895887 184895717 2.210000e-62 250
29 TraesCS7B01G068900 chr4B 93.789 161 10 0 3294 3454 537194094 537193934 3.700000e-60 243
30 TraesCS7B01G068900 chr3B 92.814 167 11 1 3291 3457 229821245 229821410 1.330000e-59 241
31 TraesCS7B01G068900 chr3B 77.500 240 48 4 2777 3014 361769247 361769482 5.000000e-29 139
32 TraesCS7B01G068900 chr5B 93.210 162 11 0 3294 3455 545578250 545578089 4.790000e-59 239
33 TraesCS7B01G068900 chr2B 89.888 178 17 1 3286 3462 659017220 659017043 1.040000e-55 228
34 TraesCS7B01G068900 chr1A 82.329 249 36 8 2777 3021 218757839 218758083 3.760000e-50 209
35 TraesCS7B01G068900 chr2A 81.176 255 41 6 2777 3027 278464022 278463771 8.130000e-47 198
36 TraesCS7B01G068900 chr2A 81.328 241 40 3 2789 3027 132067869 132067632 1.360000e-44 191
37 TraesCS7B01G068900 chr2A 80.738 244 39 7 2788 3027 369168118 369167879 2.280000e-42 183
38 TraesCS7B01G068900 chr2A 80.738 244 39 6 2789 3027 531597858 531597618 2.280000e-42 183
39 TraesCS7B01G068900 chr2D 81.933 238 35 6 2789 3022 541301354 541301587 1.050000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G068900 chr7B 74344506 74348216 3710 False 6854.000000 6854 100.000000 1 3711 1 chr7B.!!$F1 3710
1 TraesCS7B01G068900 chr7B 73682451 73685588 3137 False 785.333333 1262 82.550667 3 2726 3 chr7B.!!$F2 2723
2 TraesCS7B01G068900 chr7B 74353292 74356562 3270 False 684.000000 1059 79.140000 821 2609 2 chr7B.!!$F3 1788
3 TraesCS7B01G068900 chr7D 114821690 114827557 5867 False 2293.000000 5428 87.204000 1 3711 3 chr7D.!!$F2 3710
4 TraesCS7B01G068900 chr7D 113984741 113986884 2143 False 1041.500000 1338 85.149000 634 2726 2 chr7D.!!$F1 2092
5 TraesCS7B01G068900 chr7A 119691297 119696920 5623 False 1782.000000 3229 90.512667 1 2636 3 chr7A.!!$F5 2635
6 TraesCS7B01G068900 chr7A 119593063 119593928 865 False 1349.000000 1349 94.653000 1 876 1 chr7A.!!$F1 875
7 TraesCS7B01G068900 chr7A 119602475 119607896 5421 False 1039.200000 1914 90.695000 872 3612 5 chr7A.!!$F4 2740
8 TraesCS7B01G068900 chr7A 119127746 119129902 2156 False 1026.500000 1334 84.744000 623 2726 2 chr7A.!!$F3 2103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 453 3.249752 AGAGGGGATCTCCATGATTCAG 58.750 50.000 15.83 0.0 43.44 3.02 F
1400 1794 2.428890 TCAATTCGTGGGTTGCTTTTGT 59.571 40.909 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 2007 1.139853 GAAGATCCTTCCGGCTGACAT 59.860 52.381 0.0 0.0 0.00 3.06 R
3391 4360 1.136305 CGATGGACCACATACGAAGGT 59.864 52.381 0.0 0.0 40.72 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 282 3.251484 TCCACAGTTCATCCTTCTCCTT 58.749 45.455 0.00 0.00 0.00 3.36
354 375 6.303839 TCGGAGAATTTGGATTTATTAGGGG 58.696 40.000 0.00 0.00 0.00 4.79
430 453 3.249752 AGAGGGGATCTCCATGATTCAG 58.750 50.000 15.83 0.00 43.44 3.02
669 1056 6.202954 CCATCATGATCTAAACCTTACCGAAC 59.797 42.308 4.86 0.00 0.00 3.95
1020 1414 5.818136 AAATGGACAACGATCTAACATGG 57.182 39.130 0.00 0.00 0.00 3.66
1400 1794 2.428890 TCAATTCGTGGGTTGCTTTTGT 59.571 40.909 0.00 0.00 0.00 2.83
1502 1899 2.475111 CGCTCGAGCTTTTAGACAACAA 59.525 45.455 32.88 0.00 39.32 2.83
1610 2007 7.101054 AGAACACTTGACTTGTACTTGTTACA 58.899 34.615 0.00 0.00 39.05 2.41
1674 2071 8.264347 TGCATTAATCTTGAGTGGTTCAGTATA 58.736 33.333 0.00 0.00 37.07 1.47
1850 2247 1.358787 TGGGGATGCTCCAAACTTGAT 59.641 47.619 4.85 0.00 38.64 2.57
1953 2350 1.733912 GATCTGACATTGCGTGCTTCA 59.266 47.619 0.00 0.00 0.00 3.02
2021 2711 4.645136 AGTTGGTTTTTCTGGTTTCTCTCC 59.355 41.667 0.00 0.00 0.00 3.71
2622 3322 2.644299 TGAAGCTCTCCATTTTCTCCCA 59.356 45.455 0.00 0.00 0.00 4.37
2628 3328 4.337836 GCTCTCCATTTTCTCCCAGAATTC 59.662 45.833 0.00 0.00 33.67 2.17
2975 3678 4.884458 TCAGATACGTGTCATCTCACTC 57.116 45.455 15.08 0.00 36.33 3.51
3077 3780 8.474006 AAAACTTTGTTGTATTCCAAACTGTC 57.526 30.769 0.00 0.00 34.07 3.51
3136 3839 9.231297 CTTGTGAACTCCCTTCTTAATTAATGA 57.769 33.333 0.00 0.00 0.00 2.57
3211 4180 9.254133 TGTAACATTTTGGTTGTAAATCATGTG 57.746 29.630 0.00 0.00 36.42 3.21
3254 4223 4.631813 CCTTTTCTTCTTTCCATCGTCGAT 59.368 41.667 0.75 0.75 0.00 3.59
3260 4229 4.443913 TCTTTCCATCGTCGATTGTGTA 57.556 40.909 4.63 0.00 0.00 2.90
3302 4271 8.682710 TGCAAAACATTATATTGTACTTCCTCC 58.317 33.333 0.86 0.00 0.00 4.30
3303 4272 7.855904 GCAAAACATTATATTGTACTTCCTCCG 59.144 37.037 0.86 0.00 0.00 4.63
3304 4273 8.889717 CAAAACATTATATTGTACTTCCTCCGT 58.110 33.333 0.86 0.00 0.00 4.69
3305 4274 9.457436 AAAACATTATATTGTACTTCCTCCGTT 57.543 29.630 0.86 0.00 0.00 4.44
3306 4275 8.658499 AACATTATATTGTACTTCCTCCGTTC 57.342 34.615 0.86 0.00 0.00 3.95
3307 4276 7.215085 ACATTATATTGTACTTCCTCCGTTCC 58.785 38.462 0.00 0.00 0.00 3.62
3308 4277 7.070821 ACATTATATTGTACTTCCTCCGTTCCT 59.929 37.037 0.00 0.00 0.00 3.36
3309 4278 8.582437 CATTATATTGTACTTCCTCCGTTCCTA 58.418 37.037 0.00 0.00 0.00 2.94
3310 4279 8.537728 TTATATTGTACTTCCTCCGTTCCTAA 57.462 34.615 0.00 0.00 0.00 2.69
3311 4280 5.750352 ATTGTACTTCCTCCGTTCCTAAA 57.250 39.130 0.00 0.00 0.00 1.85
3312 4281 5.750352 TTGTACTTCCTCCGTTCCTAAAT 57.250 39.130 0.00 0.00 0.00 1.40
3313 4282 6.855763 TTGTACTTCCTCCGTTCCTAAATA 57.144 37.500 0.00 0.00 0.00 1.40
3314 4283 7.427989 TTGTACTTCCTCCGTTCCTAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
3315 4284 8.537728 TTGTACTTCCTCCGTTCCTAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
3316 4285 8.537728 TGTACTTCCTCCGTTCCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
3317 4286 8.636213 TGTACTTCCTCCGTTCCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
3318 4287 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3319 4288 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3320 4289 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3321 4290 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
3322 4291 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
3323 4292 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
3324 4293 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
3325 4294 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
3326 4295 8.542080 TCCGTTCCTAAATATAAGTCTTTGGAA 58.458 33.333 0.00 0.00 0.00 3.53
3327 4296 9.169592 CCGTTCCTAAATATAAGTCTTTGGAAA 57.830 33.333 0.00 0.00 33.62 3.13
3340 4309 7.693969 AGTCTTTGGAAAGATTTCACTATGG 57.306 36.000 5.16 0.00 45.83 2.74
3341 4310 7.461749 AGTCTTTGGAAAGATTTCACTATGGA 58.538 34.615 5.16 0.00 45.83 3.41
3342 4311 8.112183 AGTCTTTGGAAAGATTTCACTATGGAT 58.888 33.333 5.16 0.00 45.83 3.41
3343 4312 8.401709 GTCTTTGGAAAGATTTCACTATGGATC 58.598 37.037 5.16 0.00 45.83 3.36
3344 4313 8.108999 TCTTTGGAAAGATTTCACTATGGATCA 58.891 33.333 7.56 0.00 39.95 2.92
3345 4314 7.630242 TTGGAAAGATTTCACTATGGATCAC 57.370 36.000 7.56 0.00 38.92 3.06
3346 4315 6.720309 TGGAAAGATTTCACTATGGATCACA 58.280 36.000 7.56 0.00 38.92 3.58
3347 4316 7.348815 TGGAAAGATTTCACTATGGATCACAT 58.651 34.615 7.56 0.00 39.97 3.21
3348 4317 8.493607 TGGAAAGATTTCACTATGGATCACATA 58.506 33.333 7.56 0.00 38.67 2.29
3349 4318 8.778358 GGAAAGATTTCACTATGGATCACATAC 58.222 37.037 7.56 0.00 38.67 2.39
3350 4319 7.953158 AAGATTTCACTATGGATCACATACG 57.047 36.000 0.00 0.00 41.03 3.06
3351 4320 6.459066 AGATTTCACTATGGATCACATACGG 58.541 40.000 0.00 0.00 41.03 4.02
3352 4321 5.862678 TTTCACTATGGATCACATACGGA 57.137 39.130 0.00 0.00 41.03 4.69
3353 4322 5.453567 TTCACTATGGATCACATACGGAG 57.546 43.478 0.00 0.00 41.03 4.63
3354 4323 3.255888 TCACTATGGATCACATACGGAGC 59.744 47.826 0.00 0.00 41.03 4.70
3355 4324 3.005791 CACTATGGATCACATACGGAGCA 59.994 47.826 0.00 0.00 41.03 4.26
3356 4325 3.641436 ACTATGGATCACATACGGAGCAA 59.359 43.478 0.00 0.00 41.03 3.91
3357 4326 3.558931 ATGGATCACATACGGAGCAAA 57.441 42.857 0.00 0.00 38.26 3.68
3358 4327 3.342377 TGGATCACATACGGAGCAAAA 57.658 42.857 0.00 0.00 0.00 2.44
3359 4328 3.884895 TGGATCACATACGGAGCAAAAT 58.115 40.909 0.00 0.00 0.00 1.82
3360 4329 3.627123 TGGATCACATACGGAGCAAAATG 59.373 43.478 0.00 0.00 0.00 2.32
3361 4330 3.876914 GGATCACATACGGAGCAAAATGA 59.123 43.478 0.00 0.00 0.00 2.57
3362 4331 4.335315 GGATCACATACGGAGCAAAATGAA 59.665 41.667 0.00 0.00 0.00 2.57
3363 4332 5.009010 GGATCACATACGGAGCAAAATGAAT 59.991 40.000 0.00 0.00 0.00 2.57
3364 4333 5.233957 TCACATACGGAGCAAAATGAATG 57.766 39.130 0.00 0.00 0.00 2.67
3365 4334 4.940654 TCACATACGGAGCAAAATGAATGA 59.059 37.500 0.00 0.00 0.00 2.57
3366 4335 5.414144 TCACATACGGAGCAAAATGAATGAA 59.586 36.000 0.00 0.00 0.00 2.57
3367 4336 6.095300 TCACATACGGAGCAAAATGAATGAAT 59.905 34.615 0.00 0.00 0.00 2.57
3368 4337 6.753279 CACATACGGAGCAAAATGAATGAATT 59.247 34.615 0.00 0.00 0.00 2.17
3369 4338 7.276218 CACATACGGAGCAAAATGAATGAATTT 59.724 33.333 0.00 0.00 0.00 1.82
3370 4339 8.465999 ACATACGGAGCAAAATGAATGAATTTA 58.534 29.630 0.00 0.00 0.00 1.40
3371 4340 8.745837 CATACGGAGCAAAATGAATGAATTTAC 58.254 33.333 0.00 0.00 0.00 2.01
3372 4341 6.686630 ACGGAGCAAAATGAATGAATTTACA 58.313 32.000 0.00 0.00 0.00 2.41
3373 4342 6.586082 ACGGAGCAAAATGAATGAATTTACAC 59.414 34.615 0.00 0.00 0.00 2.90
3374 4343 6.585702 CGGAGCAAAATGAATGAATTTACACA 59.414 34.615 0.00 0.00 0.00 3.72
3375 4344 7.410728 CGGAGCAAAATGAATGAATTTACACAC 60.411 37.037 0.00 0.00 0.00 3.82
3376 4345 7.384660 GGAGCAAAATGAATGAATTTACACACA 59.615 33.333 0.00 0.00 0.00 3.72
3377 4346 8.659925 AGCAAAATGAATGAATTTACACACAA 57.340 26.923 0.00 0.00 0.00 3.33
3378 4347 9.107177 AGCAAAATGAATGAATTTACACACAAA 57.893 25.926 0.00 0.00 0.00 2.83
3379 4348 9.713740 GCAAAATGAATGAATTTACACACAAAA 57.286 25.926 0.00 0.00 0.00 2.44
3382 4351 9.881529 AAATGAATGAATTTACACACAAAATGC 57.118 25.926 0.00 0.00 0.00 3.56
3383 4352 8.604640 ATGAATGAATTTACACACAAAATGCA 57.395 26.923 0.00 0.00 36.53 3.96
3384 4353 8.604640 TGAATGAATTTACACACAAAATGCAT 57.395 26.923 0.00 0.00 42.09 3.96
3385 4354 8.710551 TGAATGAATTTACACACAAAATGCATC 58.289 29.630 0.00 0.00 40.28 3.91
3386 4355 8.836268 AATGAATTTACACACAAAATGCATCT 57.164 26.923 0.00 0.00 40.28 2.90
3387 4356 9.926158 AATGAATTTACACACAAAATGCATCTA 57.074 25.926 0.00 0.00 40.28 1.98
3394 4363 9.845740 TTACACACAAAATGCATCTATATACCT 57.154 29.630 0.00 0.00 0.00 3.08
3395 4364 8.752005 ACACACAAAATGCATCTATATACCTT 57.248 30.769 0.00 0.00 0.00 3.50
3396 4365 8.840321 ACACACAAAATGCATCTATATACCTTC 58.160 33.333 0.00 0.00 0.00 3.46
3397 4366 8.011673 CACACAAAATGCATCTATATACCTTCG 58.988 37.037 0.00 0.00 0.00 3.79
3398 4367 7.715249 ACACAAAATGCATCTATATACCTTCGT 59.285 33.333 0.00 0.00 0.00 3.85
3399 4368 9.203421 CACAAAATGCATCTATATACCTTCGTA 57.797 33.333 0.00 0.00 0.00 3.43
3400 4369 9.944376 ACAAAATGCATCTATATACCTTCGTAT 57.056 29.630 0.00 0.00 38.72 3.06
3402 4371 9.944376 AAAATGCATCTATATACCTTCGTATGT 57.056 29.630 0.00 0.00 35.88 2.29
3403 4372 8.932945 AATGCATCTATATACCTTCGTATGTG 57.067 34.615 0.00 0.00 35.88 3.21
3404 4373 6.863275 TGCATCTATATACCTTCGTATGTGG 58.137 40.000 0.00 0.00 35.88 4.17
3405 4374 6.436218 TGCATCTATATACCTTCGTATGTGGT 59.564 38.462 7.36 7.36 35.88 4.16
3406 4375 6.973474 GCATCTATATACCTTCGTATGTGGTC 59.027 42.308 5.83 0.00 35.88 4.02
3407 4376 7.481642 CATCTATATACCTTCGTATGTGGTCC 58.518 42.308 5.83 0.00 35.88 4.46
3408 4377 6.545567 TCTATATACCTTCGTATGTGGTCCA 58.454 40.000 5.83 0.00 35.88 4.02
3409 4378 7.179966 TCTATATACCTTCGTATGTGGTCCAT 58.820 38.462 0.00 4.52 35.88 3.41
3410 4379 2.981859 ACCTTCGTATGTGGTCCATC 57.018 50.000 0.00 0.00 34.86 3.51
3411 4380 1.136305 ACCTTCGTATGTGGTCCATCG 59.864 52.381 0.00 0.00 34.86 3.84
3412 4381 1.136305 CCTTCGTATGTGGTCCATCGT 59.864 52.381 0.00 0.00 34.86 3.73
3413 4382 2.193447 CTTCGTATGTGGTCCATCGTG 58.807 52.381 0.00 0.00 34.86 4.35
3414 4383 1.465794 TCGTATGTGGTCCATCGTGA 58.534 50.000 0.00 0.00 34.86 4.35
3415 4384 1.819903 TCGTATGTGGTCCATCGTGAA 59.180 47.619 0.00 0.00 34.86 3.18
3416 4385 2.231721 TCGTATGTGGTCCATCGTGAAA 59.768 45.455 0.00 0.00 34.86 2.69
3417 4386 3.118920 TCGTATGTGGTCCATCGTGAAAT 60.119 43.478 0.00 0.00 34.86 2.17
3418 4387 4.098196 TCGTATGTGGTCCATCGTGAAATA 59.902 41.667 0.00 0.00 34.86 1.40
3419 4388 4.806775 CGTATGTGGTCCATCGTGAAATAA 59.193 41.667 0.00 0.00 34.86 1.40
3420 4389 5.276678 CGTATGTGGTCCATCGTGAAATAAC 60.277 44.000 0.00 0.00 34.86 1.89
3421 4390 4.280436 TGTGGTCCATCGTGAAATAACT 57.720 40.909 0.00 0.00 0.00 2.24
3422 4391 5.408880 TGTGGTCCATCGTGAAATAACTA 57.591 39.130 0.00 0.00 0.00 2.24
3423 4392 5.172934 TGTGGTCCATCGTGAAATAACTAC 58.827 41.667 0.00 0.00 0.00 2.73
3424 4393 5.172934 GTGGTCCATCGTGAAATAACTACA 58.827 41.667 0.00 0.00 0.00 2.74
3425 4394 5.640357 GTGGTCCATCGTGAAATAACTACAA 59.360 40.000 0.00 0.00 0.00 2.41
3426 4395 6.148150 GTGGTCCATCGTGAAATAACTACAAA 59.852 38.462 0.00 0.00 0.00 2.83
3427 4396 6.370442 TGGTCCATCGTGAAATAACTACAAAG 59.630 38.462 0.00 0.00 0.00 2.77
3428 4397 6.592607 GGTCCATCGTGAAATAACTACAAAGA 59.407 38.462 0.00 0.00 0.00 2.52
3429 4398 7.412672 GGTCCATCGTGAAATAACTACAAAGAC 60.413 40.741 0.00 0.00 0.00 3.01
3430 4399 7.331193 GTCCATCGTGAAATAACTACAAAGACT 59.669 37.037 0.00 0.00 0.00 3.24
3431 4400 7.876068 TCCATCGTGAAATAACTACAAAGACTT 59.124 33.333 0.00 0.00 0.00 3.01
3432 4401 9.146984 CCATCGTGAAATAACTACAAAGACTTA 57.853 33.333 0.00 0.00 0.00 2.24
3445 4414 9.813446 ACTACAAAGACTTATATTTAGGAACGG 57.187 33.333 0.00 0.00 0.00 4.44
3447 4416 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3448 4417 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3449 4418 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3450 4419 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3451 4420 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3452 4421 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3453 4422 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3454 4423 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
3455 4424 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
3456 4425 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
3457 4426 4.748277 TTAGGAACGGAGGGAGTATTTG 57.252 45.455 0.00 0.00 0.00 2.32
3458 4427 2.547990 AGGAACGGAGGGAGTATTTGT 58.452 47.619 0.00 0.00 0.00 2.83
3459 4428 3.716431 AGGAACGGAGGGAGTATTTGTA 58.284 45.455 0.00 0.00 0.00 2.41
3460 4429 4.296056 AGGAACGGAGGGAGTATTTGTAT 58.704 43.478 0.00 0.00 0.00 2.29
3468 4437 3.833070 AGGGAGTATTTGTATAGCTCCGG 59.167 47.826 0.00 0.00 44.81 5.14
3474 4443 0.179056 TTGTATAGCTCCGGCAAGCC 60.179 55.000 11.34 0.00 43.56 4.35
3487 4456 1.305219 GCAAGCCGTGTGGATGCTTA 61.305 55.000 0.00 0.00 43.10 3.09
3506 4475 5.362430 TGCTTAAAAACTGGGAGACAAACAT 59.638 36.000 0.00 0.00 0.00 2.71
3538 4513 4.219070 CAGAAGCACAATCCAAATCCAAGA 59.781 41.667 0.00 0.00 0.00 3.02
3612 4587 7.764443 TGTACACATAGGATAAGAAAGAACTGC 59.236 37.037 0.00 0.00 0.00 4.40
3613 4588 6.116126 ACACATAGGATAAGAAAGAACTGCC 58.884 40.000 0.00 0.00 0.00 4.85
3615 4590 5.128827 ACATAGGATAAGAAAGAACTGCCGA 59.871 40.000 0.00 0.00 0.00 5.54
3632 4636 0.861866 CGACTACTGTGTCATCCGCG 60.862 60.000 0.00 0.00 36.82 6.46
3642 4646 4.889856 CATCCGCGATGGGCACGA 62.890 66.667 8.23 0.00 43.84 4.35
3704 4708 8.827177 TGACTCACACAAAAGGTATTACTTAG 57.173 34.615 0.00 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 146 6.799827 AGCTCCTCCTATCACTCATAACTAT 58.200 40.000 0.00 0.00 0.00 2.12
145 148 5.073437 AGCTCCTCCTATCACTCATAACT 57.927 43.478 0.00 0.00 0.00 2.24
210 213 6.017523 TCGTGTGCAGTTAAAAATCAAGATCA 60.018 34.615 0.00 0.00 0.00 2.92
277 282 3.780804 TGAATCGGAAAAGGAGGTGAA 57.219 42.857 0.00 0.00 0.00 3.18
399 420 1.591504 GATCCCCTCTCGAGATCCGC 61.592 65.000 17.03 0.09 38.37 5.54
400 421 0.037590 AGATCCCCTCTCGAGATCCG 59.962 60.000 17.03 4.23 37.69 4.18
430 453 1.604915 GAAGGTGGGAGGAGAAGGC 59.395 63.158 0.00 0.00 0.00 4.35
516 539 7.012989 TGGAGAAACTCTAGGTTTTGTAAAAGC 59.987 37.037 10.40 10.40 46.77 3.51
669 1056 2.884639 ACCCGAAGTTCATTTGTGGAAG 59.115 45.455 3.32 0.00 0.00 3.46
1020 1414 2.365293 ACCCATGTGTCTTTTTCTTGCC 59.635 45.455 0.00 0.00 0.00 4.52
1610 2007 1.139853 GAAGATCCTTCCGGCTGACAT 59.860 52.381 0.00 0.00 0.00 3.06
1674 2071 5.698104 TCATCATTCAGGTGGCATCTAAAT 58.302 37.500 0.00 0.00 0.00 1.40
1713 2110 8.342634 CGGAAGTATAATAACTTTGACAATGGG 58.657 37.037 6.09 0.00 39.78 4.00
1850 2247 7.225931 GGGTATAGAAATCAAGAAATGCGTGTA 59.774 37.037 0.00 0.00 0.00 2.90
1953 2350 4.646492 AGACAGCAAACCTTGAGTTCAAAT 59.354 37.500 0.00 0.00 37.88 2.32
2021 2711 8.498054 AGATAATATAAATGGTCATTGCGAGG 57.502 34.615 0.00 0.00 0.00 4.63
2112 2802 9.082313 ACTTCTTTGTCATCTAAAATCAACCAT 57.918 29.630 0.00 0.00 0.00 3.55
2593 3293 1.538047 TGGAGAGCTTCACATTTGGC 58.462 50.000 0.00 0.00 0.00 4.52
2622 3322 6.248433 TGTCCTTCCAGCATTTTAGAATTCT 58.752 36.000 13.56 13.56 0.00 2.40
2628 3328 5.241506 TGTTTCTGTCCTTCCAGCATTTTAG 59.758 40.000 0.00 0.00 32.32 1.85
3099 3802 4.072131 GGAGTTCACAAGGTTAATGCTCA 58.928 43.478 0.00 0.00 0.00 4.26
3191 4160 6.644592 CGTTCCACATGATTTACAACCAAAAT 59.355 34.615 0.00 0.00 0.00 1.82
3206 4175 1.927174 GAGGACGAATCGTTCCACATG 59.073 52.381 20.30 0.00 41.37 3.21
3211 4180 1.327764 GCATTGAGGACGAATCGTTCC 59.672 52.381 10.45 12.46 41.37 3.62
3295 4264 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
3298 4267 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
3299 4268 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
3300 4269 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
3314 4283 9.231297 CCATAGTGAAATCTTTCCAAAGACTTA 57.769 33.333 3.84 0.00 46.80 2.24
3315 4284 7.944554 TCCATAGTGAAATCTTTCCAAAGACTT 59.055 33.333 3.84 0.00 46.80 3.01
3316 4285 7.461749 TCCATAGTGAAATCTTTCCAAAGACT 58.538 34.615 3.84 0.68 46.80 3.24
3317 4286 7.687941 TCCATAGTGAAATCTTTCCAAAGAC 57.312 36.000 3.84 0.00 46.80 3.01
3319 4288 8.186821 GTGATCCATAGTGAAATCTTTCCAAAG 58.813 37.037 0.48 0.00 36.36 2.77
3320 4289 7.669304 TGTGATCCATAGTGAAATCTTTCCAAA 59.331 33.333 0.48 0.00 36.36 3.28
3321 4290 7.174413 TGTGATCCATAGTGAAATCTTTCCAA 58.826 34.615 0.48 0.00 36.36 3.53
3322 4291 6.720309 TGTGATCCATAGTGAAATCTTTCCA 58.280 36.000 0.48 0.00 36.36 3.53
3323 4292 7.814264 ATGTGATCCATAGTGAAATCTTTCC 57.186 36.000 0.48 0.00 32.11 3.13
3324 4293 8.491152 CGTATGTGATCCATAGTGAAATCTTTC 58.509 37.037 4.66 0.00 36.71 2.62
3325 4294 7.442364 CCGTATGTGATCCATAGTGAAATCTTT 59.558 37.037 4.66 0.00 36.71 2.52
3326 4295 6.931281 CCGTATGTGATCCATAGTGAAATCTT 59.069 38.462 4.66 0.00 36.71 2.40
3327 4296 6.267699 TCCGTATGTGATCCATAGTGAAATCT 59.732 38.462 4.66 0.00 36.71 2.40
3328 4297 6.455647 TCCGTATGTGATCCATAGTGAAATC 58.544 40.000 4.66 0.00 36.71 2.17
3329 4298 6.419484 TCCGTATGTGATCCATAGTGAAAT 57.581 37.500 4.66 0.00 36.71 2.17
3330 4299 5.739070 GCTCCGTATGTGATCCATAGTGAAA 60.739 44.000 4.66 0.00 36.71 2.69
3331 4300 4.262036 GCTCCGTATGTGATCCATAGTGAA 60.262 45.833 4.66 0.00 36.71 3.18
3332 4301 3.255888 GCTCCGTATGTGATCCATAGTGA 59.744 47.826 4.66 4.40 36.71 3.41
3333 4302 3.005791 TGCTCCGTATGTGATCCATAGTG 59.994 47.826 4.66 2.20 36.71 2.74
3334 4303 3.230976 TGCTCCGTATGTGATCCATAGT 58.769 45.455 4.66 0.00 36.71 2.12
3335 4304 3.942130 TGCTCCGTATGTGATCCATAG 57.058 47.619 4.66 0.00 36.71 2.23
3336 4305 4.681074 TTTGCTCCGTATGTGATCCATA 57.319 40.909 0.00 0.00 34.86 2.74
3337 4306 3.558931 TTTGCTCCGTATGTGATCCAT 57.441 42.857 0.00 0.00 37.58 3.41
3338 4307 3.342377 TTTTGCTCCGTATGTGATCCA 57.658 42.857 0.00 0.00 0.00 3.41
3339 4308 3.876914 TCATTTTGCTCCGTATGTGATCC 59.123 43.478 0.00 0.00 0.00 3.36
3340 4309 5.484173 TTCATTTTGCTCCGTATGTGATC 57.516 39.130 0.00 0.00 0.00 2.92
3341 4310 5.589855 TCATTCATTTTGCTCCGTATGTGAT 59.410 36.000 0.00 0.00 0.00 3.06
3342 4311 4.940654 TCATTCATTTTGCTCCGTATGTGA 59.059 37.500 0.00 0.00 0.00 3.58
3343 4312 5.233957 TCATTCATTTTGCTCCGTATGTG 57.766 39.130 0.00 0.00 0.00 3.21
3344 4313 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
3345 4314 7.760131 AAATTCATTCATTTTGCTCCGTATG 57.240 32.000 0.00 0.00 0.00 2.39
3346 4315 8.465999 TGTAAATTCATTCATTTTGCTCCGTAT 58.534 29.630 0.00 0.00 0.00 3.06
3347 4316 7.753132 GTGTAAATTCATTCATTTTGCTCCGTA 59.247 33.333 0.00 0.00 0.00 4.02
3348 4317 6.586082 GTGTAAATTCATTCATTTTGCTCCGT 59.414 34.615 0.00 0.00 0.00 4.69
3349 4318 6.585702 TGTGTAAATTCATTCATTTTGCTCCG 59.414 34.615 0.00 0.00 0.00 4.63
3350 4319 7.384660 TGTGTGTAAATTCATTCATTTTGCTCC 59.615 33.333 0.00 0.00 0.00 4.70
3351 4320 8.296799 TGTGTGTAAATTCATTCATTTTGCTC 57.703 30.769 0.00 0.00 0.00 4.26
3352 4321 8.659925 TTGTGTGTAAATTCATTCATTTTGCT 57.340 26.923 0.00 0.00 0.00 3.91
3353 4322 9.713740 TTTTGTGTGTAAATTCATTCATTTTGC 57.286 25.926 0.00 0.00 0.00 3.68
3356 4325 9.881529 GCATTTTGTGTGTAAATTCATTCATTT 57.118 25.926 0.00 0.00 0.00 2.32
3357 4326 9.053840 TGCATTTTGTGTGTAAATTCATTCATT 57.946 25.926 0.00 0.00 0.00 2.57
3358 4327 8.604640 TGCATTTTGTGTGTAAATTCATTCAT 57.395 26.923 0.00 0.00 0.00 2.57
3359 4328 8.604640 ATGCATTTTGTGTGTAAATTCATTCA 57.395 26.923 0.00 0.00 28.83 2.57
3360 4329 8.928733 AGATGCATTTTGTGTGTAAATTCATTC 58.071 29.630 0.00 0.00 31.89 2.67
3361 4330 8.836268 AGATGCATTTTGTGTGTAAATTCATT 57.164 26.923 0.00 0.00 31.89 2.57
3368 4337 9.845740 AGGTATATAGATGCATTTTGTGTGTAA 57.154 29.630 0.00 0.00 0.00 2.41
3369 4338 9.845740 AAGGTATATAGATGCATTTTGTGTGTA 57.154 29.630 0.00 0.00 0.00 2.90
3370 4339 8.752005 AAGGTATATAGATGCATTTTGTGTGT 57.248 30.769 0.00 0.00 0.00 3.72
3371 4340 8.011673 CGAAGGTATATAGATGCATTTTGTGTG 58.988 37.037 0.00 0.00 0.00 3.82
3372 4341 7.715249 ACGAAGGTATATAGATGCATTTTGTGT 59.285 33.333 0.00 0.00 0.00 3.72
3373 4342 8.087982 ACGAAGGTATATAGATGCATTTTGTG 57.912 34.615 0.00 0.00 0.00 3.33
3374 4343 9.944376 ATACGAAGGTATATAGATGCATTTTGT 57.056 29.630 0.00 0.35 37.58 2.83
3376 4345 9.944376 ACATACGAAGGTATATAGATGCATTTT 57.056 29.630 0.00 0.00 37.24 1.82
3377 4346 9.371136 CACATACGAAGGTATATAGATGCATTT 57.629 33.333 0.00 0.00 37.24 2.32
3378 4347 7.981789 CCACATACGAAGGTATATAGATGCATT 59.018 37.037 0.00 0.00 37.24 3.56
3379 4348 7.124298 ACCACATACGAAGGTATATAGATGCAT 59.876 37.037 0.00 0.00 37.24 3.96
3380 4349 6.436218 ACCACATACGAAGGTATATAGATGCA 59.564 38.462 0.00 0.00 37.24 3.96
3381 4350 6.864342 ACCACATACGAAGGTATATAGATGC 58.136 40.000 0.00 0.00 37.24 3.91
3382 4351 7.122204 TGGACCACATACGAAGGTATATAGATG 59.878 40.741 0.00 0.00 37.24 2.90
3383 4352 7.179966 TGGACCACATACGAAGGTATATAGAT 58.820 38.462 0.00 0.00 37.24 1.98
3384 4353 6.545567 TGGACCACATACGAAGGTATATAGA 58.454 40.000 0.00 0.00 37.24 1.98
3385 4354 6.829229 TGGACCACATACGAAGGTATATAG 57.171 41.667 0.00 0.00 37.24 1.31
3386 4355 6.094464 CGATGGACCACATACGAAGGTATATA 59.906 42.308 0.00 0.00 40.72 0.86
3387 4356 5.105877 CGATGGACCACATACGAAGGTATAT 60.106 44.000 0.00 0.00 40.72 0.86
3388 4357 4.216902 CGATGGACCACATACGAAGGTATA 59.783 45.833 0.00 0.00 40.72 1.47
3389 4358 3.005472 CGATGGACCACATACGAAGGTAT 59.995 47.826 0.00 0.00 40.72 2.73
3390 4359 2.359848 CGATGGACCACATACGAAGGTA 59.640 50.000 0.00 0.00 40.72 3.08
3391 4360 1.136305 CGATGGACCACATACGAAGGT 59.864 52.381 0.00 0.00 40.72 3.50
3392 4361 1.136305 ACGATGGACCACATACGAAGG 59.864 52.381 15.53 0.00 40.72 3.46
3393 4362 2.159296 TCACGATGGACCACATACGAAG 60.159 50.000 15.53 9.52 40.72 3.79
3394 4363 1.819903 TCACGATGGACCACATACGAA 59.180 47.619 15.53 4.55 40.72 3.85
3395 4364 1.465794 TCACGATGGACCACATACGA 58.534 50.000 15.53 0.12 40.72 3.43
3396 4365 2.287393 TTCACGATGGACCACATACG 57.713 50.000 0.00 3.48 40.72 3.06
3397 4366 5.815740 AGTTATTTCACGATGGACCACATAC 59.184 40.000 0.00 0.00 40.72 2.39
3398 4367 5.984725 AGTTATTTCACGATGGACCACATA 58.015 37.500 0.00 0.00 40.72 2.29
3399 4368 4.843728 AGTTATTTCACGATGGACCACAT 58.156 39.130 0.00 0.00 44.18 3.21
3400 4369 4.280436 AGTTATTTCACGATGGACCACA 57.720 40.909 0.00 0.00 0.00 4.17
3401 4370 5.172934 TGTAGTTATTTCACGATGGACCAC 58.827 41.667 0.00 0.00 0.00 4.16
3402 4371 5.408880 TGTAGTTATTTCACGATGGACCA 57.591 39.130 0.00 0.00 0.00 4.02
3403 4372 6.592607 TCTTTGTAGTTATTTCACGATGGACC 59.407 38.462 0.00 0.00 0.00 4.46
3404 4373 7.331193 AGTCTTTGTAGTTATTTCACGATGGAC 59.669 37.037 0.00 0.00 0.00 4.02
3405 4374 7.383687 AGTCTTTGTAGTTATTTCACGATGGA 58.616 34.615 0.00 0.00 0.00 3.41
3406 4375 7.596749 AGTCTTTGTAGTTATTTCACGATGG 57.403 36.000 0.00 0.00 0.00 3.51
3419 4388 9.813446 CCGTTCCTAAATATAAGTCTTTGTAGT 57.187 33.333 0.00 0.00 0.00 2.73
3422 4391 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3423 4392 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3424 4393 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3425 4394 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3426 4395 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3427 4396 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3428 4397 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3429 4398 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3430 4399 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3431 4400 8.591072 CAAATACTCCCTCCGTTCCTAAATATA 58.409 37.037 0.00 0.00 0.00 0.86
3432 4401 7.072076 ACAAATACTCCCTCCGTTCCTAAATAT 59.928 37.037 0.00 0.00 0.00 1.28
3433 4402 6.384886 ACAAATACTCCCTCCGTTCCTAAATA 59.615 38.462 0.00 0.00 0.00 1.40
3434 4403 5.191124 ACAAATACTCCCTCCGTTCCTAAAT 59.809 40.000 0.00 0.00 0.00 1.40
3435 4404 4.533311 ACAAATACTCCCTCCGTTCCTAAA 59.467 41.667 0.00 0.00 0.00 1.85
3436 4405 4.098894 ACAAATACTCCCTCCGTTCCTAA 58.901 43.478 0.00 0.00 0.00 2.69
3437 4406 3.716431 ACAAATACTCCCTCCGTTCCTA 58.284 45.455 0.00 0.00 0.00 2.94
3438 4407 2.547990 ACAAATACTCCCTCCGTTCCT 58.452 47.619 0.00 0.00 0.00 3.36
3439 4408 4.684484 ATACAAATACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
3440 4409 5.010820 AGCTATACAAATACTCCCTCCGTTC 59.989 44.000 0.00 0.00 0.00 3.95
3441 4410 4.900054 AGCTATACAAATACTCCCTCCGTT 59.100 41.667 0.00 0.00 0.00 4.44
3442 4411 4.481072 AGCTATACAAATACTCCCTCCGT 58.519 43.478 0.00 0.00 0.00 4.69
3443 4412 4.082136 GGAGCTATACAAATACTCCCTCCG 60.082 50.000 0.00 0.00 40.91 4.63
3444 4413 4.082136 CGGAGCTATACAAATACTCCCTCC 60.082 50.000 0.00 0.00 43.31 4.30
3445 4414 4.082136 CCGGAGCTATACAAATACTCCCTC 60.082 50.000 0.00 0.00 43.31 4.30
3446 4415 3.833070 CCGGAGCTATACAAATACTCCCT 59.167 47.826 0.00 0.00 43.31 4.20
3447 4416 3.616802 GCCGGAGCTATACAAATACTCCC 60.617 52.174 5.05 0.00 43.31 4.30
3448 4417 3.006537 TGCCGGAGCTATACAAATACTCC 59.993 47.826 5.05 0.00 42.89 3.85
3449 4418 4.252971 TGCCGGAGCTATACAAATACTC 57.747 45.455 5.05 0.00 40.80 2.59
3450 4419 4.632153 CTTGCCGGAGCTATACAAATACT 58.368 43.478 5.05 0.00 40.80 2.12
3451 4420 3.186613 GCTTGCCGGAGCTATACAAATAC 59.813 47.826 5.05 0.00 39.57 1.89
3452 4421 3.399330 GCTTGCCGGAGCTATACAAATA 58.601 45.455 5.05 0.00 39.57 1.40
3453 4422 2.222027 GCTTGCCGGAGCTATACAAAT 58.778 47.619 5.05 0.00 39.57 2.32
3454 4423 1.663695 GCTTGCCGGAGCTATACAAA 58.336 50.000 5.05 0.00 39.57 2.83
3455 4424 0.179056 GGCTTGCCGGAGCTATACAA 60.179 55.000 5.05 0.00 42.32 2.41
3456 4425 1.445942 GGCTTGCCGGAGCTATACA 59.554 57.895 5.05 0.00 42.32 2.29
3457 4426 1.664965 CGGCTTGCCGGAGCTATAC 60.665 63.158 24.53 0.00 42.32 1.47
3458 4427 2.131709 ACGGCTTGCCGGAGCTATA 61.132 57.895 32.83 0.00 42.32 1.31
3459 4428 3.470888 ACGGCTTGCCGGAGCTAT 61.471 61.111 32.83 12.27 42.32 2.97
3460 4429 4.451150 CACGGCTTGCCGGAGCTA 62.451 66.667 32.83 0.00 42.32 3.32
3468 4437 1.305219 TAAGCATCCACACGGCTTGC 61.305 55.000 8.25 0.72 46.49 4.01
3474 4443 3.564511 CCAGTTTTTAAGCATCCACACG 58.435 45.455 0.00 0.00 0.00 4.49
3487 4456 7.013846 TCGATAAATGTTTGTCTCCCAGTTTTT 59.986 33.333 1.69 0.00 0.00 1.94
3506 4475 3.623060 GGATTGTGCTTCTGCTCGATAAA 59.377 43.478 0.00 0.00 37.05 1.40
3538 4513 8.474025 TCAACTTGTGTCCTTGATTTACATTTT 58.526 29.630 0.00 0.00 0.00 1.82
3612 4587 0.525668 GCGGATGACACAGTAGTCGG 60.526 60.000 0.00 0.00 41.41 4.79
3613 4588 0.861866 CGCGGATGACACAGTAGTCG 60.862 60.000 0.00 0.00 41.41 4.18
3615 4590 1.103803 ATCGCGGATGACACAGTAGT 58.896 50.000 6.13 0.00 0.00 2.73
3632 4636 2.071844 TACGCTAGCTCGTGCCCATC 62.072 60.000 13.93 0.00 43.21 3.51
3642 4646 1.681793 ACGGACAATGATACGCTAGCT 59.318 47.619 13.93 2.46 0.00 3.32
3681 4685 9.841295 TTTCTAAGTAATACCTTTTGTGTGAGT 57.159 29.630 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.