Multiple sequence alignment - TraesCS7B01G068800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G068800 chr7B 100.000 2318 0 0 1 2318 74304277 74301960 0.000000e+00 4281.0
1 TraesCS7B01G068800 chr7B 92.537 67 4 1 2074 2139 139546004 139546070 6.820000e-16 95.3
2 TraesCS7B01G068800 chr2B 96.820 1352 41 1 1 1352 751294003 751292654 0.000000e+00 2257.0
3 TraesCS7B01G068800 chr1B 95.994 1348 50 2 1 1345 510814672 510813326 0.000000e+00 2187.0
4 TraesCS7B01G068800 chr1B 91.308 1346 114 3 1 1345 533811578 533812921 0.000000e+00 1834.0
5 TraesCS7B01G068800 chr1B 89.236 1282 133 3 1 1281 68936825 68938102 0.000000e+00 1598.0
6 TraesCS7B01G068800 chr1B 91.045 67 5 1 2074 2139 638725033 638725099 3.170000e-14 89.8
7 TraesCS7B01G068800 chr5B 91.266 1351 110 5 1 1345 281242802 281244150 0.000000e+00 1834.0
8 TraesCS7B01G068800 chr5B 91.045 67 5 1 2074 2139 44985296 44985362 3.170000e-14 89.8
9 TraesCS7B01G068800 chr6A 89.822 1346 133 3 2 1347 511536377 511537718 0.000000e+00 1724.0
10 TraesCS7B01G068800 chr6A 89.458 1347 138 3 2 1348 97342668 97341326 0.000000e+00 1698.0
11 TraesCS7B01G068800 chr6B 89.376 1346 136 6 1 1345 478884227 478882888 0.000000e+00 1687.0
12 TraesCS7B01G068800 chr6B 91.045 67 5 1 2074 2139 297433719 297433653 3.170000e-14 89.8
13 TraesCS7B01G068800 chr4A 89.203 1343 139 5 2 1341 494000389 494001728 0.000000e+00 1672.0
14 TraesCS7B01G068800 chr7D 96.697 333 11 0 1686 2018 114841188 114840856 2.600000e-154 555.0
15 TraesCS7B01G068800 chr7D 90.323 186 11 1 2140 2318 114840829 114840644 1.070000e-58 237.0
16 TraesCS7B01G068800 chr1D 83.279 305 33 8 1716 2018 10695569 10695281 4.910000e-67 265.0
17 TraesCS7B01G068800 chr2D 83.539 243 21 9 1716 1955 453627607 453627381 2.330000e-50 209.0
18 TraesCS7B01G068800 chrUn 91.045 67 5 1 2074 2139 221552247 221552313 3.170000e-14 89.8
19 TraesCS7B01G068800 chr7A 91.045 67 5 1 2074 2139 4921721 4921655 3.170000e-14 89.8
20 TraesCS7B01G068800 chr4D 91.045 67 5 1 2074 2139 167112014 167112080 3.170000e-14 89.8
21 TraesCS7B01G068800 chr3A 91.045 67 5 1 2074 2139 729635514 729635580 3.170000e-14 89.8
22 TraesCS7B01G068800 chr1A 91.045 67 5 1 2074 2139 115887486 115887552 3.170000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G068800 chr7B 74301960 74304277 2317 True 4281 4281 100.000 1 2318 1 chr7B.!!$R1 2317
1 TraesCS7B01G068800 chr2B 751292654 751294003 1349 True 2257 2257 96.820 1 1352 1 chr2B.!!$R1 1351
2 TraesCS7B01G068800 chr1B 510813326 510814672 1346 True 2187 2187 95.994 1 1345 1 chr1B.!!$R1 1344
3 TraesCS7B01G068800 chr1B 533811578 533812921 1343 False 1834 1834 91.308 1 1345 1 chr1B.!!$F2 1344
4 TraesCS7B01G068800 chr1B 68936825 68938102 1277 False 1598 1598 89.236 1 1281 1 chr1B.!!$F1 1280
5 TraesCS7B01G068800 chr5B 281242802 281244150 1348 False 1834 1834 91.266 1 1345 1 chr5B.!!$F2 1344
6 TraesCS7B01G068800 chr6A 511536377 511537718 1341 False 1724 1724 89.822 2 1347 1 chr6A.!!$F1 1345
7 TraesCS7B01G068800 chr6A 97341326 97342668 1342 True 1698 1698 89.458 2 1348 1 chr6A.!!$R1 1346
8 TraesCS7B01G068800 chr6B 478882888 478884227 1339 True 1687 1687 89.376 1 1345 1 chr6B.!!$R2 1344
9 TraesCS7B01G068800 chr4A 494000389 494001728 1339 False 1672 1672 89.203 2 1341 1 chr4A.!!$F1 1339
10 TraesCS7B01G068800 chr7D 114840644 114841188 544 True 396 555 93.510 1686 2318 2 chr7D.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.857675 ACTTTTTGGCCTGGTACCCT 59.142 50.0 10.07 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 1631 0.043224 CGTGTCGAGTCGTCCGATAG 60.043 60.0 13.12 0.0 38.38 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 6.016777 GTCTCTGACTTTTTGGATGACAATGT 60.017 38.462 0.00 0.00 39.21 2.71
146 147 8.733458 TGATCACATCCTGAAAATTAGAACTTG 58.267 33.333 0.00 0.00 30.60 3.16
183 184 0.857675 ACTTTTTGGCCTGGTACCCT 59.142 50.000 10.07 0.00 0.00 4.34
354 355 5.531122 AAATGAAGATCAATGCATGGAGG 57.469 39.130 10.16 0.00 0.00 4.30
373 374 1.551883 GGTGTGTAACGGGGACTATGT 59.448 52.381 0.00 0.00 42.39 2.29
628 631 3.705604 CTGCTTATGTTTATTTGGCGGG 58.294 45.455 0.00 0.00 0.00 6.13
802 808 2.113139 CGTTGCCAGACCAAGGGT 59.887 61.111 0.00 0.00 39.44 4.34
891 897 1.045350 TCCTGAAGGAGGATGGCTCG 61.045 60.000 0.00 0.00 46.96 5.03
930 942 5.873164 GGTGCTTAGAAACGATAAAGGAGAA 59.127 40.000 0.00 0.00 0.00 2.87
950 962 2.196595 AGTTCTAATGGCAGCCTACCA 58.803 47.619 14.15 0.00 42.61 3.25
1206 1222 4.118093 TCAAAATAGAGTTGCCGATCGA 57.882 40.909 18.66 0.00 0.00 3.59
1252 1268 2.672908 CCATGGCTGTCTGGCTGA 59.327 61.111 0.00 0.00 42.34 4.26
1253 1269 1.001764 CCATGGCTGTCTGGCTGAA 60.002 57.895 0.00 0.00 42.34 3.02
1308 1324 5.296283 GCCTCTCGACTGTAACTCTATAACA 59.704 44.000 0.00 0.00 0.00 2.41
1335 1351 1.359168 AAAGCTCCCTTTACCCTCGT 58.641 50.000 0.00 0.00 39.44 4.18
1341 1357 3.688185 GCTCCCTTTACCCTCGTAAAAAG 59.312 47.826 0.00 0.00 42.46 2.27
1366 1382 2.825861 AAAAAGTACCTCGCGGAGAA 57.174 45.000 6.13 0.00 0.00 2.87
1367 1383 3.329929 AAAAAGTACCTCGCGGAGAAT 57.670 42.857 6.13 0.00 0.00 2.40
1368 1384 3.329929 AAAAGTACCTCGCGGAGAATT 57.670 42.857 6.13 0.00 0.00 2.17
1369 1385 2.295253 AAGTACCTCGCGGAGAATTG 57.705 50.000 6.13 0.00 0.00 2.32
1370 1386 0.179108 AGTACCTCGCGGAGAATTGC 60.179 55.000 6.13 0.00 0.00 3.56
1371 1387 1.143183 TACCTCGCGGAGAATTGCC 59.857 57.895 6.13 0.00 0.00 4.52
1378 1394 2.785258 GGAGAATTGCCGACGTGC 59.215 61.111 0.00 0.00 0.00 5.34
1379 1395 2.395690 GAGAATTGCCGACGTGCG 59.604 61.111 0.00 0.00 40.47 5.34
1380 1396 2.048597 AGAATTGCCGACGTGCGA 60.049 55.556 0.00 0.00 44.57 5.10
1381 1397 2.014093 GAGAATTGCCGACGTGCGAG 62.014 60.000 0.00 0.00 44.57 5.03
1382 1398 3.083600 GAATTGCCGACGTGCGAGG 62.084 63.158 0.00 2.73 44.57 4.63
1400 1416 2.184579 GCTCGTCCCACAGCCTAC 59.815 66.667 0.00 0.00 0.00 3.18
1401 1417 2.893398 CTCGTCCCACAGCCTACC 59.107 66.667 0.00 0.00 0.00 3.18
1402 1418 1.682684 CTCGTCCCACAGCCTACCT 60.683 63.158 0.00 0.00 0.00 3.08
1411 1427 3.842869 CAGCCTACCTGTGAAGACC 57.157 57.895 0.00 0.00 36.79 3.85
1412 1428 0.976641 CAGCCTACCTGTGAAGACCA 59.023 55.000 0.00 0.00 36.79 4.02
1413 1429 1.066573 CAGCCTACCTGTGAAGACCAG 60.067 57.143 0.00 0.00 36.79 4.00
1431 1447 2.182516 AGGATTACCTGGGAGGACAG 57.817 55.000 0.00 0.00 45.92 3.51
1447 1463 3.616935 CAGGATGTGCGATTTGCTG 57.383 52.632 0.00 0.00 46.63 4.41
1448 1464 1.089112 CAGGATGTGCGATTTGCTGA 58.911 50.000 0.00 0.00 46.63 4.26
1449 1465 1.674441 CAGGATGTGCGATTTGCTGAT 59.326 47.619 0.00 0.00 46.63 2.90
1450 1466 2.874086 CAGGATGTGCGATTTGCTGATA 59.126 45.455 0.00 0.00 46.63 2.15
1451 1467 3.501062 CAGGATGTGCGATTTGCTGATAT 59.499 43.478 0.00 0.00 46.63 1.63
1452 1468 4.023450 CAGGATGTGCGATTTGCTGATATT 60.023 41.667 0.00 0.00 46.63 1.28
1453 1469 4.023450 AGGATGTGCGATTTGCTGATATTG 60.023 41.667 0.00 0.00 46.63 1.90
1454 1470 3.069074 TGTGCGATTTGCTGATATTGC 57.931 42.857 0.00 0.00 46.63 3.56
1455 1471 2.422832 TGTGCGATTTGCTGATATTGCA 59.577 40.909 0.00 0.00 46.63 4.08
1456 1472 3.067040 TGTGCGATTTGCTGATATTGCAT 59.933 39.130 5.40 0.00 46.63 3.96
1457 1473 3.424198 GTGCGATTTGCTGATATTGCATG 59.576 43.478 5.40 0.00 46.63 4.06
1458 1474 3.067040 TGCGATTTGCTGATATTGCATGT 59.933 39.130 5.40 0.00 46.63 3.21
1459 1475 4.275443 TGCGATTTGCTGATATTGCATGTA 59.725 37.500 5.40 0.00 46.63 2.29
1460 1476 5.048573 TGCGATTTGCTGATATTGCATGTAT 60.049 36.000 5.40 0.00 46.63 2.29
1461 1477 5.860182 GCGATTTGCTGATATTGCATGTATT 59.140 36.000 5.40 0.00 40.34 1.89
1462 1478 7.022979 GCGATTTGCTGATATTGCATGTATTA 58.977 34.615 5.40 0.00 40.34 0.98
1463 1479 7.007725 GCGATTTGCTGATATTGCATGTATTAC 59.992 37.037 5.40 0.00 40.34 1.89
1464 1480 8.232513 CGATTTGCTGATATTGCATGTATTACT 58.767 33.333 5.40 0.00 40.34 2.24
1465 1481 9.338291 GATTTGCTGATATTGCATGTATTACTG 57.662 33.333 5.40 0.00 40.34 2.74
1466 1482 8.449251 TTTGCTGATATTGCATGTATTACTGA 57.551 30.769 5.40 0.00 40.34 3.41
1467 1483 7.662604 TGCTGATATTGCATGTATTACTGAG 57.337 36.000 0.00 0.00 35.31 3.35
1468 1484 7.444299 TGCTGATATTGCATGTATTACTGAGA 58.556 34.615 0.00 0.00 35.31 3.27
1469 1485 7.933033 TGCTGATATTGCATGTATTACTGAGAA 59.067 33.333 0.00 0.00 35.31 2.87
1470 1486 8.226448 GCTGATATTGCATGTATTACTGAGAAC 58.774 37.037 0.00 0.00 0.00 3.01
1471 1487 9.486497 CTGATATTGCATGTATTACTGAGAACT 57.514 33.333 0.00 0.00 0.00 3.01
1476 1492 9.618890 ATTGCATGTATTACTGAGAACTATGTT 57.381 29.630 0.00 0.00 0.00 2.71
1477 1493 8.424274 TGCATGTATTACTGAGAACTATGTTG 57.576 34.615 0.00 0.00 0.00 3.33
1478 1494 8.257306 TGCATGTATTACTGAGAACTATGTTGA 58.743 33.333 0.00 0.00 0.00 3.18
1479 1495 9.265901 GCATGTATTACTGAGAACTATGTTGAT 57.734 33.333 0.00 0.00 0.00 2.57
1483 1499 9.922305 GTATTACTGAGAACTATGTTGATTTGC 57.078 33.333 0.00 0.00 0.00 3.68
1484 1500 8.798859 ATTACTGAGAACTATGTTGATTTGCT 57.201 30.769 0.00 0.00 0.00 3.91
1485 1501 6.492007 ACTGAGAACTATGTTGATTTGCTG 57.508 37.500 0.00 0.00 0.00 4.41
1486 1502 6.233434 ACTGAGAACTATGTTGATTTGCTGA 58.767 36.000 0.00 0.00 0.00 4.26
1487 1503 6.883217 ACTGAGAACTATGTTGATTTGCTGAT 59.117 34.615 0.00 0.00 0.00 2.90
1488 1504 8.043113 ACTGAGAACTATGTTGATTTGCTGATA 58.957 33.333 0.00 0.00 0.00 2.15
1489 1505 8.969260 TGAGAACTATGTTGATTTGCTGATAT 57.031 30.769 0.00 0.00 0.00 1.63
1490 1506 9.399797 TGAGAACTATGTTGATTTGCTGATATT 57.600 29.630 0.00 0.00 0.00 1.28
1491 1507 9.661187 GAGAACTATGTTGATTTGCTGATATTG 57.339 33.333 0.00 0.00 0.00 1.90
1492 1508 8.133627 AGAACTATGTTGATTTGCTGATATTGC 58.866 33.333 0.00 0.00 0.00 3.56
1493 1509 7.337480 ACTATGTTGATTTGCTGATATTGCA 57.663 32.000 0.97 0.97 38.80 4.08
1494 1510 7.423199 ACTATGTTGATTTGCTGATATTGCAG 58.577 34.615 4.87 0.00 41.71 4.41
1495 1511 5.001237 TGTTGATTTGCTGATATTGCAGG 57.999 39.130 4.87 0.00 41.71 4.85
1496 1512 3.720949 TGATTTGCTGATATTGCAGGC 57.279 42.857 4.87 0.00 41.71 4.85
1497 1513 2.033675 TGATTTGCTGATATTGCAGGCG 59.966 45.455 4.87 0.00 41.71 5.52
1498 1514 0.740149 TTTGCTGATATTGCAGGCGG 59.260 50.000 4.87 0.00 41.71 6.13
1499 1515 1.727511 TTGCTGATATTGCAGGCGGC 61.728 55.000 0.00 0.00 41.71 6.53
1520 1536 3.663176 CGTGTGCTGGTGGCCTTG 61.663 66.667 3.32 0.00 40.92 3.61
1521 1537 2.203337 GTGTGCTGGTGGCCTTGA 60.203 61.111 3.32 0.00 40.92 3.02
1522 1538 1.604593 GTGTGCTGGTGGCCTTGAT 60.605 57.895 3.32 0.00 40.92 2.57
1523 1539 0.322456 GTGTGCTGGTGGCCTTGATA 60.322 55.000 3.32 0.00 40.92 2.15
1524 1540 0.403655 TGTGCTGGTGGCCTTGATAA 59.596 50.000 3.32 0.00 40.92 1.75
1525 1541 1.098050 GTGCTGGTGGCCTTGATAAG 58.902 55.000 3.32 0.00 40.92 1.73
1526 1542 0.698238 TGCTGGTGGCCTTGATAAGT 59.302 50.000 3.32 0.00 40.92 2.24
1527 1543 1.075374 TGCTGGTGGCCTTGATAAGTT 59.925 47.619 3.32 0.00 40.92 2.66
1528 1544 2.171003 GCTGGTGGCCTTGATAAGTTT 58.829 47.619 3.32 0.00 34.27 2.66
1529 1545 2.094545 GCTGGTGGCCTTGATAAGTTTG 60.095 50.000 3.32 0.00 34.27 2.93
1530 1546 3.157087 CTGGTGGCCTTGATAAGTTTGT 58.843 45.455 3.32 0.00 0.00 2.83
1531 1547 4.331968 CTGGTGGCCTTGATAAGTTTGTA 58.668 43.478 3.32 0.00 0.00 2.41
1532 1548 4.929479 TGGTGGCCTTGATAAGTTTGTAT 58.071 39.130 3.32 0.00 0.00 2.29
1533 1549 4.947388 TGGTGGCCTTGATAAGTTTGTATC 59.053 41.667 3.32 0.00 0.00 2.24
1534 1550 4.035208 GGTGGCCTTGATAAGTTTGTATCG 59.965 45.833 3.32 0.00 33.83 2.92
1535 1551 4.634443 GTGGCCTTGATAAGTTTGTATCGT 59.366 41.667 3.32 0.00 33.83 3.73
1536 1552 5.813672 GTGGCCTTGATAAGTTTGTATCGTA 59.186 40.000 3.32 0.00 33.83 3.43
1537 1553 6.482308 GTGGCCTTGATAAGTTTGTATCGTAT 59.518 38.462 3.32 0.00 33.83 3.06
1538 1554 7.654520 GTGGCCTTGATAAGTTTGTATCGTATA 59.345 37.037 3.32 0.00 33.83 1.47
1539 1555 7.654520 TGGCCTTGATAAGTTTGTATCGTATAC 59.345 37.037 3.32 0.00 33.83 1.47
1540 1556 7.148853 GGCCTTGATAAGTTTGTATCGTATACG 60.149 40.741 19.23 19.23 41.45 3.06
1541 1557 7.380602 GCCTTGATAAGTTTGTATCGTATACGT 59.619 37.037 23.67 13.96 40.80 3.57
1542 1558 9.882996 CCTTGATAAGTTTGTATCGTATACGTA 57.117 33.333 23.67 13.02 40.80 3.57
1561 1577 5.755813 ACGTAGTATATACGCTGGAAAGTG 58.244 41.667 7.23 0.00 41.94 3.16
1562 1578 5.152097 CGTAGTATATACGCTGGAAAGTGG 58.848 45.833 7.23 0.00 34.07 4.00
1563 1579 5.049198 CGTAGTATATACGCTGGAAAGTGGA 60.049 44.000 7.23 0.00 34.07 4.02
1564 1580 5.864418 AGTATATACGCTGGAAAGTGGAA 57.136 39.130 7.23 0.00 0.00 3.53
1565 1581 6.229936 AGTATATACGCTGGAAAGTGGAAA 57.770 37.500 7.23 0.00 0.00 3.13
1566 1582 6.827727 AGTATATACGCTGGAAAGTGGAAAT 58.172 36.000 7.23 0.00 0.00 2.17
1567 1583 7.280356 AGTATATACGCTGGAAAGTGGAAATT 58.720 34.615 7.23 0.00 0.00 1.82
1568 1584 8.426489 AGTATATACGCTGGAAAGTGGAAATTA 58.574 33.333 7.23 0.00 0.00 1.40
1569 1585 9.216117 GTATATACGCTGGAAAGTGGAAATTAT 57.784 33.333 0.00 0.00 0.00 1.28
1571 1587 5.813080 ACGCTGGAAAGTGGAAATTATAC 57.187 39.130 0.00 0.00 0.00 1.47
1572 1588 4.331717 ACGCTGGAAAGTGGAAATTATACG 59.668 41.667 0.00 0.00 0.00 3.06
1573 1589 4.598062 GCTGGAAAGTGGAAATTATACGC 58.402 43.478 0.00 0.00 0.00 4.42
1574 1590 4.785341 GCTGGAAAGTGGAAATTATACGCG 60.785 45.833 3.53 3.53 0.00 6.01
1575 1591 4.255301 TGGAAAGTGGAAATTATACGCGT 58.745 39.130 19.17 19.17 0.00 6.01
1576 1592 5.417811 TGGAAAGTGGAAATTATACGCGTA 58.582 37.500 22.94 22.94 0.00 4.42
1577 1593 5.521010 TGGAAAGTGGAAATTATACGCGTAG 59.479 40.000 24.78 0.00 0.00 3.51
1578 1594 5.050567 GGAAAGTGGAAATTATACGCGTAGG 60.051 44.000 24.78 0.00 0.00 3.18
1579 1595 3.387397 AGTGGAAATTATACGCGTAGGC 58.613 45.455 24.78 9.26 0.00 3.93
1580 1596 3.125316 GTGGAAATTATACGCGTAGGCA 58.875 45.455 24.78 10.96 39.92 4.75
1581 1597 3.060070 GTGGAAATTATACGCGTAGGCAC 60.060 47.826 24.78 12.55 39.92 5.01
1591 1607 3.087638 CGTAGGCACGGATATCACG 57.912 57.895 4.83 8.39 44.59 4.35
1592 1608 0.309922 CGTAGGCACGGATATCACGT 59.690 55.000 11.85 11.85 46.82 4.49
1593 1609 1.532437 CGTAGGCACGGATATCACGTA 59.468 52.381 15.74 2.24 43.58 3.57
1594 1610 2.161012 CGTAGGCACGGATATCACGTAT 59.839 50.000 15.74 9.64 43.58 3.06
1595 1611 2.724977 AGGCACGGATATCACGTATG 57.275 50.000 15.74 8.55 43.58 2.39
1596 1612 1.961394 AGGCACGGATATCACGTATGT 59.039 47.619 15.74 4.42 43.58 2.29
1597 1613 3.151554 AGGCACGGATATCACGTATGTA 58.848 45.455 15.74 0.00 43.58 2.29
1598 1614 3.057736 AGGCACGGATATCACGTATGTAC 60.058 47.826 15.74 7.55 43.58 2.90
1599 1615 3.240069 GCACGGATATCACGTATGTACC 58.760 50.000 15.74 0.00 43.58 3.34
1600 1616 3.304861 GCACGGATATCACGTATGTACCA 60.305 47.826 15.74 0.00 43.58 3.25
1601 1617 4.224433 CACGGATATCACGTATGTACCAC 58.776 47.826 15.74 0.00 43.58 4.16
1602 1618 3.058708 ACGGATATCACGTATGTACCACG 60.059 47.826 14.91 13.71 43.60 4.94
1603 1619 3.668757 CGGATATCACGTATGTACCACGG 60.669 52.174 18.00 9.45 43.59 4.94
1604 1620 2.780065 TATCACGTATGTACCACGGC 57.220 50.000 18.00 0.00 43.59 5.68
1605 1621 0.103572 ATCACGTATGTACCACGGCC 59.896 55.000 18.00 0.00 43.59 6.13
1606 1622 1.215912 CACGTATGTACCACGGCCA 59.784 57.895 18.00 0.00 43.59 5.36
1607 1623 0.804544 CACGTATGTACCACGGCCAG 60.805 60.000 18.00 0.00 43.59 4.85
1608 1624 1.227147 CGTATGTACCACGGCCAGG 60.227 63.158 2.24 6.62 35.78 4.45
1609 1625 1.523032 GTATGTACCACGGCCAGGC 60.523 63.158 11.05 1.26 0.00 4.85
1610 1626 2.737881 TATGTACCACGGCCAGGCC 61.738 63.158 22.33 22.33 46.75 5.19
1627 1643 2.905880 CGGGCCTATCGGACGACT 60.906 66.667 0.84 0.00 40.27 4.18
1628 1644 2.905807 CGGGCCTATCGGACGACTC 61.906 68.421 0.84 0.00 40.27 3.36
1629 1645 2.638154 GGCCTATCGGACGACTCG 59.362 66.667 0.00 0.00 0.00 4.18
1630 1646 1.890979 GGCCTATCGGACGACTCGA 60.891 63.158 5.20 0.00 41.04 4.04
1631 1647 1.279238 GCCTATCGGACGACTCGAC 59.721 63.158 5.20 0.00 39.55 4.20
1632 1648 1.434622 GCCTATCGGACGACTCGACA 61.435 60.000 5.20 0.00 39.55 4.35
1633 1649 0.304098 CCTATCGGACGACTCGACAC 59.696 60.000 5.20 0.00 39.55 3.67
1634 1650 0.043224 CTATCGGACGACTCGACACG 60.043 60.000 5.20 6.64 39.55 4.49
1635 1651 2.028766 TATCGGACGACTCGACACGC 62.029 60.000 5.20 1.07 39.55 5.34
1642 1658 4.394078 ACTCGACACGCGCGCTTA 62.394 61.111 32.58 10.32 40.61 3.09
1643 1659 3.598562 CTCGACACGCGCGCTTAG 61.599 66.667 32.58 19.71 40.61 2.18
1651 1667 2.820037 GCGCGCTTAGGCCTCTTT 60.820 61.111 26.67 0.00 34.44 2.52
1652 1668 1.520787 GCGCGCTTAGGCCTCTTTA 60.521 57.895 26.67 0.00 34.44 1.85
1653 1669 1.763200 GCGCGCTTAGGCCTCTTTAC 61.763 60.000 26.67 0.00 34.44 2.01
1654 1670 0.179108 CGCGCTTAGGCCTCTTTACT 60.179 55.000 9.68 0.00 34.44 2.24
1655 1671 1.291132 GCGCTTAGGCCTCTTTACTG 58.709 55.000 9.68 0.00 34.44 2.74
1656 1672 1.291132 CGCTTAGGCCTCTTTACTGC 58.709 55.000 9.68 3.42 34.44 4.40
1657 1673 1.405526 CGCTTAGGCCTCTTTACTGCA 60.406 52.381 9.68 0.00 34.44 4.41
1658 1674 2.010497 GCTTAGGCCTCTTTACTGCAC 58.990 52.381 9.68 0.00 0.00 4.57
1659 1675 2.355209 GCTTAGGCCTCTTTACTGCACT 60.355 50.000 9.68 0.00 0.00 4.40
1660 1676 3.265791 CTTAGGCCTCTTTACTGCACTG 58.734 50.000 9.68 0.00 0.00 3.66
1661 1677 0.322008 AGGCCTCTTTACTGCACTGC 60.322 55.000 0.00 0.00 0.00 4.40
1662 1678 0.606401 GGCCTCTTTACTGCACTGCA 60.606 55.000 3.11 3.11 36.92 4.41
1663 1679 1.457346 GCCTCTTTACTGCACTGCAT 58.543 50.000 3.64 0.00 38.13 3.96
1664 1680 1.131883 GCCTCTTTACTGCACTGCATG 59.868 52.381 3.64 1.75 38.13 4.06
1672 1688 3.571119 GCACTGCATGCGAAGACT 58.429 55.556 14.09 0.00 46.55 3.24
1673 1689 1.423056 GCACTGCATGCGAAGACTC 59.577 57.895 14.09 0.00 46.55 3.36
1674 1690 1.293963 GCACTGCATGCGAAGACTCA 61.294 55.000 14.09 0.00 46.55 3.41
1675 1691 0.441533 CACTGCATGCGAAGACTCAC 59.558 55.000 14.09 0.00 0.00 3.51
1676 1692 0.319728 ACTGCATGCGAAGACTCACT 59.680 50.000 14.09 0.00 0.00 3.41
1677 1693 0.997932 CTGCATGCGAAGACTCACTC 59.002 55.000 14.09 0.00 0.00 3.51
1678 1694 0.390340 TGCATGCGAAGACTCACTCC 60.390 55.000 14.09 0.00 0.00 3.85
1679 1695 0.390340 GCATGCGAAGACTCACTCCA 60.390 55.000 0.00 0.00 0.00 3.86
1680 1696 1.941209 GCATGCGAAGACTCACTCCAA 60.941 52.381 0.00 0.00 0.00 3.53
1681 1697 2.625737 CATGCGAAGACTCACTCCAAT 58.374 47.619 0.00 0.00 0.00 3.16
1682 1698 3.785486 CATGCGAAGACTCACTCCAATA 58.215 45.455 0.00 0.00 0.00 1.90
1683 1699 4.375272 CATGCGAAGACTCACTCCAATAT 58.625 43.478 0.00 0.00 0.00 1.28
1684 1700 3.785486 TGCGAAGACTCACTCCAATATG 58.215 45.455 0.00 0.00 0.00 1.78
1708 1724 7.284074 TGACAAACCCTAACAAGTCATTTCTA 58.716 34.615 0.00 0.00 31.72 2.10
1745 1761 7.451566 ACCAATAAATGATTTATAGGTGAGCCC 59.548 37.037 10.56 0.00 34.88 5.19
1755 1771 0.478072 AGGTGAGCCCACATGTCAAA 59.522 50.000 0.00 0.00 44.93 2.69
1781 1797 2.103042 GCATGCGACTCACTCCACC 61.103 63.158 0.00 0.00 0.00 4.61
1787 1803 1.810412 GCGACTCACTCCACCAAAAGT 60.810 52.381 0.00 0.00 0.00 2.66
1835 1851 0.811616 GGTCACCGGCTTGCATCTAG 60.812 60.000 0.00 0.00 0.00 2.43
2051 2077 7.971183 TTGTTCTTTGTTTTGCTTAAAAGGT 57.029 28.000 0.00 0.00 31.87 3.50
2052 2078 7.357951 TGTTCTTTGTTTTGCTTAAAAGGTG 57.642 32.000 0.00 0.00 31.87 4.00
2053 2079 6.931840 TGTTCTTTGTTTTGCTTAAAAGGTGT 59.068 30.769 0.00 0.00 31.87 4.16
2054 2080 7.442666 TGTTCTTTGTTTTGCTTAAAAGGTGTT 59.557 29.630 0.00 0.00 31.87 3.32
2055 2081 7.971183 TCTTTGTTTTGCTTAAAAGGTGTTT 57.029 28.000 0.00 0.00 31.87 2.83
2056 2082 8.384607 TCTTTGTTTTGCTTAAAAGGTGTTTT 57.615 26.923 0.00 0.00 39.31 2.43
2057 2083 8.499967 TCTTTGTTTTGCTTAAAAGGTGTTTTC 58.500 29.630 0.00 0.00 37.12 2.29
2058 2084 7.971183 TTGTTTTGCTTAAAAGGTGTTTTCT 57.029 28.000 0.00 0.00 37.12 2.52
2059 2085 7.971183 TGTTTTGCTTAAAAGGTGTTTTCTT 57.029 28.000 0.00 0.00 37.12 2.52
2060 2086 8.384607 TGTTTTGCTTAAAAGGTGTTTTCTTT 57.615 26.923 0.00 0.00 37.12 2.52
2061 2087 9.490379 TGTTTTGCTTAAAAGGTGTTTTCTTTA 57.510 25.926 0.00 0.00 37.12 1.85
2062 2088 9.749490 GTTTTGCTTAAAAGGTGTTTTCTTTAC 57.251 29.630 0.00 0.00 37.12 2.01
2063 2089 9.490379 TTTTGCTTAAAAGGTGTTTTCTTTACA 57.510 25.926 0.00 0.00 37.12 2.41
2064 2090 8.696410 TTGCTTAAAAGGTGTTTTCTTTACAG 57.304 30.769 0.00 0.00 37.12 2.74
2065 2091 8.057536 TGCTTAAAAGGTGTTTTCTTTACAGA 57.942 30.769 0.00 0.00 37.12 3.41
2066 2092 8.524487 TGCTTAAAAGGTGTTTTCTTTACAGAA 58.476 29.630 0.00 0.00 37.12 3.02
2067 2093 9.529325 GCTTAAAAGGTGTTTTCTTTACAGAAT 57.471 29.630 0.00 0.00 38.89 2.40
2074 2100 9.841295 AGGTGTTTTCTTTACAGAATTAGTACA 57.159 29.630 0.00 0.00 38.89 2.90
2092 2118 9.855021 ATTAGTACAAATAAACAAGTGAATGCC 57.145 29.630 0.00 0.00 0.00 4.40
2093 2119 7.524717 AGTACAAATAAACAAGTGAATGCCT 57.475 32.000 0.00 0.00 0.00 4.75
2094 2120 8.630054 AGTACAAATAAACAAGTGAATGCCTA 57.370 30.769 0.00 0.00 0.00 3.93
2095 2121 9.073475 AGTACAAATAAACAAGTGAATGCCTAA 57.927 29.630 0.00 0.00 0.00 2.69
2096 2122 9.124807 GTACAAATAAACAAGTGAATGCCTAAC 57.875 33.333 0.00 0.00 0.00 2.34
2097 2123 7.151976 ACAAATAAACAAGTGAATGCCTAACC 58.848 34.615 0.00 0.00 0.00 2.85
2098 2124 6.909550 AATAAACAAGTGAATGCCTAACCA 57.090 33.333 0.00 0.00 0.00 3.67
2099 2125 6.909550 ATAAACAAGTGAATGCCTAACCAA 57.090 33.333 0.00 0.00 0.00 3.67
2100 2126 5.806654 AAACAAGTGAATGCCTAACCAAT 57.193 34.783 0.00 0.00 0.00 3.16
2101 2127 5.806654 AACAAGTGAATGCCTAACCAATT 57.193 34.783 0.00 0.00 0.00 2.32
2102 2128 5.138125 ACAAGTGAATGCCTAACCAATTG 57.862 39.130 0.00 0.00 39.54 2.32
2103 2129 4.832266 ACAAGTGAATGCCTAACCAATTGA 59.168 37.500 7.12 0.00 37.81 2.57
2104 2130 5.481473 ACAAGTGAATGCCTAACCAATTGAT 59.519 36.000 7.12 0.00 37.81 2.57
2105 2131 5.841957 AGTGAATGCCTAACCAATTGATC 57.158 39.130 7.12 0.00 0.00 2.92
2106 2132 4.646492 AGTGAATGCCTAACCAATTGATCC 59.354 41.667 7.12 0.00 0.00 3.36
2107 2133 4.646492 GTGAATGCCTAACCAATTGATCCT 59.354 41.667 7.12 0.00 0.00 3.24
2108 2134 5.827797 GTGAATGCCTAACCAATTGATCCTA 59.172 40.000 7.12 0.00 0.00 2.94
2109 2135 6.321181 GTGAATGCCTAACCAATTGATCCTAA 59.679 38.462 7.12 0.00 0.00 2.69
2110 2136 6.894654 TGAATGCCTAACCAATTGATCCTAAA 59.105 34.615 7.12 0.00 0.00 1.85
2111 2137 7.398618 TGAATGCCTAACCAATTGATCCTAAAA 59.601 33.333 7.12 0.00 0.00 1.52
2112 2138 6.773976 TGCCTAACCAATTGATCCTAAAAG 57.226 37.500 7.12 0.00 0.00 2.27
2113 2139 6.489603 TGCCTAACCAATTGATCCTAAAAGA 58.510 36.000 7.12 0.00 0.00 2.52
2114 2140 7.125391 TGCCTAACCAATTGATCCTAAAAGAT 58.875 34.615 7.12 0.00 0.00 2.40
2115 2141 7.285401 TGCCTAACCAATTGATCCTAAAAGATC 59.715 37.037 7.12 0.00 42.57 2.75
2116 2142 7.503902 GCCTAACCAATTGATCCTAAAAGATCT 59.496 37.037 7.12 0.00 42.68 2.75
2117 2143 9.413734 CCTAACCAATTGATCCTAAAAGATCTT 57.586 33.333 7.12 0.88 42.68 2.40
2131 2157 9.225436 CCTAAAAGATCTTATTTGAGATAGGCC 57.775 37.037 8.75 0.00 36.54 5.19
2132 2158 9.784531 CTAAAAGATCTTATTTGAGATAGGCCA 57.215 33.333 8.75 0.00 36.54 5.36
2133 2159 8.688747 AAAAGATCTTATTTGAGATAGGCCAG 57.311 34.615 8.75 0.00 36.54 4.85
2134 2160 7.623999 AAGATCTTATTTGAGATAGGCCAGA 57.376 36.000 6.06 0.00 36.54 3.86
2135 2161 7.811482 AGATCTTATTTGAGATAGGCCAGAT 57.189 36.000 5.01 0.00 36.54 2.90
2136 2162 8.217188 AGATCTTATTTGAGATAGGCCAGATT 57.783 34.615 5.01 0.00 36.54 2.40
2137 2163 8.102047 AGATCTTATTTGAGATAGGCCAGATTG 58.898 37.037 5.01 0.00 36.54 2.67
2138 2164 6.537355 TCTTATTTGAGATAGGCCAGATTGG 58.463 40.000 5.01 0.00 41.55 3.16
2139 2165 4.803329 ATTTGAGATAGGCCAGATTGGT 57.197 40.909 5.01 0.00 40.46 3.67
2140 2166 4.591321 TTTGAGATAGGCCAGATTGGTT 57.409 40.909 5.01 0.00 40.46 3.67
2141 2167 3.565764 TGAGATAGGCCAGATTGGTTG 57.434 47.619 5.01 0.00 40.46 3.77
2142 2168 2.846206 TGAGATAGGCCAGATTGGTTGT 59.154 45.455 5.01 0.00 40.46 3.32
2146 2172 4.346418 AGATAGGCCAGATTGGTTGTAGAG 59.654 45.833 5.01 0.00 40.46 2.43
2259 2285 3.121738 AGAAATCAAACGACGAGGGTT 57.878 42.857 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.097232 CCGAGCTTGATTCCATGCAA 58.903 50.000 1.22 0.00 43.51 4.08
146 147 2.432628 CCTCACGTTGTCGAGGCC 60.433 66.667 6.72 0.00 42.30 5.19
354 355 2.231964 TGACATAGTCCCCGTTACACAC 59.768 50.000 0.00 0.00 0.00 3.82
891 897 1.815421 CACCATACCGACAGCTGCC 60.815 63.158 15.27 0.16 0.00 4.85
930 942 2.092914 GTGGTAGGCTGCCATTAGAACT 60.093 50.000 27.28 0.00 38.40 3.01
950 962 5.181748 GGTCATTGCAGTAGAAGATGAAGT 58.818 41.667 0.00 0.00 0.00 3.01
1308 1324 5.015284 AGGGTAAAGGGAGCTTTATTGAAGT 59.985 40.000 0.00 0.00 37.69 3.01
1356 1372 2.202743 TCGGCAATTCTCCGCGAG 60.203 61.111 8.23 3.02 46.05 5.03
1357 1373 2.508439 GTCGGCAATTCTCCGCGA 60.508 61.111 8.23 0.00 46.05 5.87
1358 1374 3.913573 CGTCGGCAATTCTCCGCG 61.914 66.667 0.00 0.00 46.05 6.46
1359 1375 2.813908 ACGTCGGCAATTCTCCGC 60.814 61.111 10.06 5.73 46.05 5.54
1361 1377 2.785258 GCACGTCGGCAATTCTCC 59.215 61.111 0.00 0.00 0.00 3.71
1362 1378 2.014093 CTCGCACGTCGGCAATTCTC 62.014 60.000 0.00 0.00 39.05 2.87
1363 1379 2.048597 TCGCACGTCGGCAATTCT 60.049 55.556 0.00 0.00 39.05 2.40
1364 1380 2.395690 CTCGCACGTCGGCAATTC 59.604 61.111 0.00 0.00 39.05 2.17
1365 1381 3.118454 CCTCGCACGTCGGCAATT 61.118 61.111 0.00 0.00 39.05 2.32
1383 1399 2.184579 GTAGGCTGTGGGACGAGC 59.815 66.667 0.00 0.00 34.23 5.03
1384 1400 1.682684 AGGTAGGCTGTGGGACGAG 60.683 63.158 0.00 0.00 0.00 4.18
1385 1401 1.982395 CAGGTAGGCTGTGGGACGA 60.982 63.158 0.00 0.00 0.00 4.20
1386 1402 2.283529 ACAGGTAGGCTGTGGGACG 61.284 63.158 0.00 0.00 33.29 4.79
1387 1403 1.296715 CACAGGTAGGCTGTGGGAC 59.703 63.158 0.00 0.00 45.91 4.46
1388 1404 3.805928 CACAGGTAGGCTGTGGGA 58.194 61.111 0.00 0.00 45.91 4.37
1392 1408 0.977395 GGTCTTCACAGGTAGGCTGT 59.023 55.000 0.00 0.00 35.11 4.40
1393 1409 0.976641 TGGTCTTCACAGGTAGGCTG 59.023 55.000 0.00 0.00 0.00 4.85
1394 1410 1.270907 CTGGTCTTCACAGGTAGGCT 58.729 55.000 0.00 0.00 32.38 4.58
1395 1411 3.842869 CTGGTCTTCACAGGTAGGC 57.157 57.895 0.00 0.00 32.38 3.93
1412 1428 1.344496 CCTGTCCTCCCAGGTAATCCT 60.344 57.143 0.00 0.00 45.81 3.24
1413 1429 1.132500 CCTGTCCTCCCAGGTAATCC 58.868 60.000 0.00 0.00 45.81 3.01
1420 1436 1.222936 GCACATCCTGTCCTCCCAG 59.777 63.158 0.00 0.00 0.00 4.45
1421 1437 2.659063 CGCACATCCTGTCCTCCCA 61.659 63.158 0.00 0.00 0.00 4.37
1422 1438 1.690219 ATCGCACATCCTGTCCTCCC 61.690 60.000 0.00 0.00 0.00 4.30
1423 1439 0.179000 AATCGCACATCCTGTCCTCC 59.821 55.000 0.00 0.00 0.00 4.30
1424 1440 1.667724 CAAATCGCACATCCTGTCCTC 59.332 52.381 0.00 0.00 0.00 3.71
1425 1441 1.742761 CAAATCGCACATCCTGTCCT 58.257 50.000 0.00 0.00 0.00 3.85
1426 1442 0.099436 GCAAATCGCACATCCTGTCC 59.901 55.000 0.00 0.00 41.79 4.02
1427 1443 1.089920 AGCAAATCGCACATCCTGTC 58.910 50.000 0.00 0.00 46.13 3.51
1428 1444 0.806868 CAGCAAATCGCACATCCTGT 59.193 50.000 0.00 0.00 46.13 4.00
1429 1445 1.089112 TCAGCAAATCGCACATCCTG 58.911 50.000 0.00 0.00 46.13 3.86
1430 1446 2.048444 ATCAGCAAATCGCACATCCT 57.952 45.000 0.00 0.00 46.13 3.24
1431 1447 4.224433 CAATATCAGCAAATCGCACATCC 58.776 43.478 0.00 0.00 46.13 3.51
1432 1448 3.667261 GCAATATCAGCAAATCGCACATC 59.333 43.478 0.00 0.00 46.13 3.06
1433 1449 3.067040 TGCAATATCAGCAAATCGCACAT 59.933 39.130 0.69 0.00 46.13 3.21
1434 1450 2.422832 TGCAATATCAGCAAATCGCACA 59.577 40.909 0.69 0.00 46.13 4.57
1435 1451 3.069074 TGCAATATCAGCAAATCGCAC 57.931 42.857 0.69 0.00 46.13 5.34
1436 1452 3.067040 ACATGCAATATCAGCAAATCGCA 59.933 39.130 6.86 0.00 46.27 5.10
1437 1453 3.635331 ACATGCAATATCAGCAAATCGC 58.365 40.909 6.86 0.00 46.27 4.58
1438 1454 8.232513 AGTAATACATGCAATATCAGCAAATCG 58.767 33.333 6.86 0.66 46.27 3.34
1439 1455 9.338291 CAGTAATACATGCAATATCAGCAAATC 57.662 33.333 6.86 0.00 46.27 2.17
1440 1456 9.070179 TCAGTAATACATGCAATATCAGCAAAT 57.930 29.630 6.86 2.05 46.27 2.32
1441 1457 8.449251 TCAGTAATACATGCAATATCAGCAAA 57.551 30.769 6.86 0.00 46.27 3.68
1442 1458 7.933033 TCTCAGTAATACATGCAATATCAGCAA 59.067 33.333 6.86 0.00 46.27 3.91
1444 1460 7.895975 TCTCAGTAATACATGCAATATCAGC 57.104 36.000 0.00 0.00 0.00 4.26
1445 1461 9.486497 AGTTCTCAGTAATACATGCAATATCAG 57.514 33.333 0.00 0.00 0.00 2.90
1450 1466 9.618890 AACATAGTTCTCAGTAATACATGCAAT 57.381 29.630 0.00 0.00 0.00 3.56
1451 1467 8.882736 CAACATAGTTCTCAGTAATACATGCAA 58.117 33.333 0.00 0.00 0.00 4.08
1452 1468 8.257306 TCAACATAGTTCTCAGTAATACATGCA 58.743 33.333 0.00 0.00 0.00 3.96
1453 1469 8.648557 TCAACATAGTTCTCAGTAATACATGC 57.351 34.615 0.00 0.00 0.00 4.06
1457 1473 9.922305 GCAAATCAACATAGTTCTCAGTAATAC 57.078 33.333 0.00 0.00 0.00 1.89
1458 1474 9.890629 AGCAAATCAACATAGTTCTCAGTAATA 57.109 29.630 0.00 0.00 0.00 0.98
1459 1475 8.671921 CAGCAAATCAACATAGTTCTCAGTAAT 58.328 33.333 0.00 0.00 0.00 1.89
1460 1476 7.877612 TCAGCAAATCAACATAGTTCTCAGTAA 59.122 33.333 0.00 0.00 0.00 2.24
1461 1477 7.386059 TCAGCAAATCAACATAGTTCTCAGTA 58.614 34.615 0.00 0.00 0.00 2.74
1462 1478 6.233434 TCAGCAAATCAACATAGTTCTCAGT 58.767 36.000 0.00 0.00 0.00 3.41
1463 1479 6.732531 TCAGCAAATCAACATAGTTCTCAG 57.267 37.500 0.00 0.00 0.00 3.35
1464 1480 8.969260 ATATCAGCAAATCAACATAGTTCTCA 57.031 30.769 0.00 0.00 0.00 3.27
1465 1481 9.661187 CAATATCAGCAAATCAACATAGTTCTC 57.339 33.333 0.00 0.00 0.00 2.87
1466 1482 8.133627 GCAATATCAGCAAATCAACATAGTTCT 58.866 33.333 0.00 0.00 0.00 3.01
1467 1483 7.916977 TGCAATATCAGCAAATCAACATAGTTC 59.083 33.333 0.69 0.00 39.39 3.01
1468 1484 7.774134 TGCAATATCAGCAAATCAACATAGTT 58.226 30.769 0.69 0.00 39.39 2.24
1469 1485 7.337480 TGCAATATCAGCAAATCAACATAGT 57.663 32.000 0.69 0.00 39.39 2.12
1470 1486 6.861572 CCTGCAATATCAGCAAATCAACATAG 59.138 38.462 4.60 0.00 42.17 2.23
1471 1487 6.736519 GCCTGCAATATCAGCAAATCAACATA 60.737 38.462 4.60 0.00 42.17 2.29
1472 1488 5.597806 CCTGCAATATCAGCAAATCAACAT 58.402 37.500 4.60 0.00 42.17 2.71
1473 1489 4.678574 GCCTGCAATATCAGCAAATCAACA 60.679 41.667 4.60 0.00 42.17 3.33
1474 1490 3.800506 GCCTGCAATATCAGCAAATCAAC 59.199 43.478 4.60 0.00 42.17 3.18
1475 1491 3.489568 CGCCTGCAATATCAGCAAATCAA 60.490 43.478 4.60 0.00 42.17 2.57
1476 1492 2.033675 CGCCTGCAATATCAGCAAATCA 59.966 45.455 4.60 0.00 42.17 2.57
1477 1493 2.606308 CCGCCTGCAATATCAGCAAATC 60.606 50.000 4.60 0.00 42.17 2.17
1478 1494 1.338973 CCGCCTGCAATATCAGCAAAT 59.661 47.619 4.60 0.00 42.17 2.32
1479 1495 0.740149 CCGCCTGCAATATCAGCAAA 59.260 50.000 4.60 0.00 42.17 3.68
1480 1496 1.727511 GCCGCCTGCAATATCAGCAA 61.728 55.000 4.60 0.00 42.17 3.91
1481 1497 2.188829 GCCGCCTGCAATATCAGCA 61.189 57.895 3.18 3.18 40.77 4.41
1482 1498 2.641559 GCCGCCTGCAATATCAGC 59.358 61.111 0.00 0.00 40.77 4.26
1483 1499 2.610694 CCGCCGCCTGCAATATCAG 61.611 63.158 0.00 0.00 41.33 2.90
1484 1500 2.591429 CCGCCGCCTGCAATATCA 60.591 61.111 0.00 0.00 41.33 2.15
1485 1501 3.357079 CCCGCCGCCTGCAATATC 61.357 66.667 0.00 0.00 41.33 1.63
1503 1519 3.663176 CAAGGCCACCAGCACACG 61.663 66.667 5.01 0.00 46.50 4.49
1504 1520 0.322456 TATCAAGGCCACCAGCACAC 60.322 55.000 5.01 0.00 46.50 3.82
1505 1521 0.403655 TTATCAAGGCCACCAGCACA 59.596 50.000 5.01 0.00 46.50 4.57
1506 1522 1.098050 CTTATCAAGGCCACCAGCAC 58.902 55.000 5.01 0.00 46.50 4.40
1507 1523 0.698238 ACTTATCAAGGCCACCAGCA 59.302 50.000 5.01 0.00 46.50 4.41
1508 1524 1.839424 AACTTATCAAGGCCACCAGC 58.161 50.000 5.01 0.00 42.60 4.85
1509 1525 3.157087 ACAAACTTATCAAGGCCACCAG 58.843 45.455 5.01 0.00 0.00 4.00
1510 1526 3.237268 ACAAACTTATCAAGGCCACCA 57.763 42.857 5.01 0.00 0.00 4.17
1511 1527 4.035208 CGATACAAACTTATCAAGGCCACC 59.965 45.833 5.01 0.00 0.00 4.61
1512 1528 4.634443 ACGATACAAACTTATCAAGGCCAC 59.366 41.667 5.01 0.00 0.00 5.01
1513 1529 4.839121 ACGATACAAACTTATCAAGGCCA 58.161 39.130 5.01 0.00 0.00 5.36
1514 1530 7.148853 CGTATACGATACAAACTTATCAAGGCC 60.149 40.741 20.58 0.00 43.02 5.19
1515 1531 7.380602 ACGTATACGATACAAACTTATCAAGGC 59.619 37.037 30.77 0.00 43.02 4.35
1516 1532 8.792831 ACGTATACGATACAAACTTATCAAGG 57.207 34.615 30.77 0.00 43.02 3.61
1534 1550 8.660373 ACTTTCCAGCGTATATACTACGTATAC 58.340 37.037 11.05 0.00 42.35 1.47
1535 1551 8.659491 CACTTTCCAGCGTATATACTACGTATA 58.341 37.037 11.05 0.00 42.35 1.47
1536 1552 7.361542 CCACTTTCCAGCGTATATACTACGTAT 60.362 40.741 11.05 0.00 42.35 3.06
1537 1553 6.073058 CCACTTTCCAGCGTATATACTACGTA 60.073 42.308 11.05 0.00 42.35 3.57
1538 1554 5.278169 CCACTTTCCAGCGTATATACTACGT 60.278 44.000 11.05 0.00 42.35 3.57
1539 1555 5.049198 TCCACTTTCCAGCGTATATACTACG 60.049 44.000 11.05 1.80 43.13 3.51
1540 1556 6.323203 TCCACTTTCCAGCGTATATACTAC 57.677 41.667 11.05 3.35 0.00 2.73
1541 1557 6.964807 TTCCACTTTCCAGCGTATATACTA 57.035 37.500 11.05 0.00 0.00 1.82
1542 1558 5.864418 TTCCACTTTCCAGCGTATATACT 57.136 39.130 11.05 0.00 0.00 2.12
1543 1559 7.492352 AATTTCCACTTTCCAGCGTATATAC 57.508 36.000 2.53 2.53 0.00 1.47
1545 1561 9.216117 GTATAATTTCCACTTTCCAGCGTATAT 57.784 33.333 0.00 0.00 0.00 0.86
1546 1562 7.383029 CGTATAATTTCCACTTTCCAGCGTATA 59.617 37.037 0.00 0.00 0.00 1.47
1547 1563 6.202188 CGTATAATTTCCACTTTCCAGCGTAT 59.798 38.462 0.00 0.00 0.00 3.06
1548 1564 5.521010 CGTATAATTTCCACTTTCCAGCGTA 59.479 40.000 0.00 0.00 0.00 4.42
1549 1565 4.331717 CGTATAATTTCCACTTTCCAGCGT 59.668 41.667 0.00 0.00 0.00 5.07
1550 1566 4.785341 GCGTATAATTTCCACTTTCCAGCG 60.785 45.833 0.00 0.00 0.00 5.18
1551 1567 4.598062 GCGTATAATTTCCACTTTCCAGC 58.402 43.478 0.00 0.00 0.00 4.85
1552 1568 4.331717 ACGCGTATAATTTCCACTTTCCAG 59.668 41.667 11.67 0.00 0.00 3.86
1553 1569 4.255301 ACGCGTATAATTTCCACTTTCCA 58.745 39.130 11.67 0.00 0.00 3.53
1554 1570 4.870221 ACGCGTATAATTTCCACTTTCC 57.130 40.909 11.67 0.00 0.00 3.13
1555 1571 5.557703 GCCTACGCGTATAATTTCCACTTTC 60.558 44.000 20.91 0.00 0.00 2.62
1556 1572 4.271776 GCCTACGCGTATAATTTCCACTTT 59.728 41.667 20.91 0.00 0.00 2.66
1557 1573 3.805971 GCCTACGCGTATAATTTCCACTT 59.194 43.478 20.91 0.00 0.00 3.16
1558 1574 3.181473 TGCCTACGCGTATAATTTCCACT 60.181 43.478 20.91 0.00 38.08 4.00
1559 1575 3.060070 GTGCCTACGCGTATAATTTCCAC 60.060 47.826 20.91 13.97 38.08 4.02
1560 1576 3.125316 GTGCCTACGCGTATAATTTCCA 58.875 45.455 20.91 6.48 38.08 3.53
1561 1577 2.154389 CGTGCCTACGCGTATAATTTCC 59.846 50.000 20.91 3.65 44.11 3.13
1562 1578 3.413687 CGTGCCTACGCGTATAATTTC 57.586 47.619 20.91 7.68 44.11 2.17
1574 1590 3.057736 ACATACGTGATATCCGTGCCTAC 60.058 47.826 21.88 3.92 39.22 3.18
1575 1591 3.151554 ACATACGTGATATCCGTGCCTA 58.848 45.455 21.88 8.61 39.22 3.93
1576 1592 1.961394 ACATACGTGATATCCGTGCCT 59.039 47.619 21.88 9.47 39.22 4.75
1577 1593 2.433868 ACATACGTGATATCCGTGCC 57.566 50.000 21.88 0.00 39.22 5.01
1578 1594 3.240069 GGTACATACGTGATATCCGTGC 58.760 50.000 21.88 11.05 39.22 5.34
1579 1595 4.224433 GTGGTACATACGTGATATCCGTG 58.776 47.826 21.88 12.86 44.52 4.94
1580 1596 3.058708 CGTGGTACATACGTGATATCCGT 60.059 47.826 18.78 18.78 44.52 4.69
1581 1597 3.485633 CGTGGTACATACGTGATATCCG 58.514 50.000 12.18 10.77 44.52 4.18
1582 1598 3.829948 CCGTGGTACATACGTGATATCC 58.170 50.000 17.10 0.00 44.52 2.59
1583 1599 3.240069 GCCGTGGTACATACGTGATATC 58.760 50.000 17.10 0.00 44.52 1.63
1584 1600 2.029649 GGCCGTGGTACATACGTGATAT 60.030 50.000 17.10 0.00 44.52 1.63
1585 1601 1.337703 GGCCGTGGTACATACGTGATA 59.662 52.381 17.10 0.00 44.52 2.15
1586 1602 0.103572 GGCCGTGGTACATACGTGAT 59.896 55.000 17.10 0.00 44.52 3.06
1587 1603 1.249469 TGGCCGTGGTACATACGTGA 61.249 55.000 17.10 2.39 44.52 4.35
1588 1604 0.804544 CTGGCCGTGGTACATACGTG 60.805 60.000 17.10 11.33 44.52 4.49
1589 1605 1.514087 CTGGCCGTGGTACATACGT 59.486 57.895 17.10 0.00 44.52 3.57
1590 1606 1.227147 CCTGGCCGTGGTACATACG 60.227 63.158 13.13 13.13 44.52 3.06
1591 1607 1.523032 GCCTGGCCGTGGTACATAC 60.523 63.158 7.66 0.00 44.52 2.39
1592 1608 2.737881 GGCCTGGCCGTGGTACATA 61.738 63.158 24.16 0.00 39.34 2.29
1593 1609 4.109675 GGCCTGGCCGTGGTACAT 62.110 66.667 24.16 0.00 39.34 2.29
1615 1631 0.043224 CGTGTCGAGTCGTCCGATAG 60.043 60.000 13.12 0.00 38.38 2.08
1616 1632 2.001357 CGTGTCGAGTCGTCCGATA 58.999 57.895 13.12 0.00 38.38 2.92
1617 1633 2.783275 CGTGTCGAGTCGTCCGAT 59.217 61.111 13.12 0.00 38.38 4.18
1618 1634 4.081030 GCGTGTCGAGTCGTCCGA 62.081 66.667 13.12 0.00 0.00 4.55
1625 1641 4.394078 TAAGCGCGCGTGTCGAGT 62.394 61.111 32.35 4.29 41.67 4.18
1626 1642 3.598562 CTAAGCGCGCGTGTCGAG 61.599 66.667 32.35 14.80 41.67 4.04
1634 1650 1.520787 TAAAGAGGCCTAAGCGCGC 60.521 57.895 26.66 26.66 41.24 6.86
1635 1651 0.179108 AGTAAAGAGGCCTAAGCGCG 60.179 55.000 4.42 0.00 41.24 6.86
1636 1652 1.291132 CAGTAAAGAGGCCTAAGCGC 58.709 55.000 4.42 0.00 41.24 5.92
1637 1653 1.291132 GCAGTAAAGAGGCCTAAGCG 58.709 55.000 4.42 0.00 41.24 4.68
1638 1654 2.010497 GTGCAGTAAAGAGGCCTAAGC 58.990 52.381 4.42 2.71 38.76 3.09
1639 1655 3.265791 CAGTGCAGTAAAGAGGCCTAAG 58.734 50.000 4.42 0.00 0.00 2.18
1640 1656 2.615493 GCAGTGCAGTAAAGAGGCCTAA 60.615 50.000 4.42 0.00 0.00 2.69
1641 1657 1.066143 GCAGTGCAGTAAAGAGGCCTA 60.066 52.381 4.42 0.00 0.00 3.93
1642 1658 0.322008 GCAGTGCAGTAAAGAGGCCT 60.322 55.000 3.86 3.86 0.00 5.19
1643 1659 0.606401 TGCAGTGCAGTAAAGAGGCC 60.606 55.000 15.37 0.00 33.32 5.19
1644 1660 1.131883 CATGCAGTGCAGTAAAGAGGC 59.868 52.381 24.20 0.00 43.65 4.70
1656 1672 0.441533 GTGAGTCTTCGCATGCAGTG 59.558 55.000 19.57 6.49 33.95 3.66
1657 1673 0.319728 AGTGAGTCTTCGCATGCAGT 59.680 50.000 19.57 0.00 36.27 4.40
1658 1674 0.997932 GAGTGAGTCTTCGCATGCAG 59.002 55.000 19.57 8.71 36.27 4.41
1659 1675 0.390340 GGAGTGAGTCTTCGCATGCA 60.390 55.000 19.57 1.73 36.27 3.96
1660 1676 0.390340 TGGAGTGAGTCTTCGCATGC 60.390 55.000 7.91 7.91 36.27 4.06
1661 1677 2.084610 TTGGAGTGAGTCTTCGCATG 57.915 50.000 0.00 0.00 36.27 4.06
1662 1678 4.100035 TCATATTGGAGTGAGTCTTCGCAT 59.900 41.667 0.00 0.00 36.27 4.73
1663 1679 3.447229 TCATATTGGAGTGAGTCTTCGCA 59.553 43.478 0.00 0.00 36.27 5.10
1664 1680 3.799420 GTCATATTGGAGTGAGTCTTCGC 59.201 47.826 0.00 0.00 0.00 4.70
1665 1681 4.998788 TGTCATATTGGAGTGAGTCTTCG 58.001 43.478 0.00 0.00 0.00 3.79
1666 1682 6.092807 GGTTTGTCATATTGGAGTGAGTCTTC 59.907 42.308 0.00 0.00 0.00 2.87
1667 1683 5.940470 GGTTTGTCATATTGGAGTGAGTCTT 59.060 40.000 0.00 0.00 0.00 3.01
1668 1684 5.491982 GGTTTGTCATATTGGAGTGAGTCT 58.508 41.667 0.00 0.00 0.00 3.24
1669 1685 4.636206 GGGTTTGTCATATTGGAGTGAGTC 59.364 45.833 0.00 0.00 0.00 3.36
1670 1686 4.289672 AGGGTTTGTCATATTGGAGTGAGT 59.710 41.667 0.00 0.00 0.00 3.41
1671 1687 4.848357 AGGGTTTGTCATATTGGAGTGAG 58.152 43.478 0.00 0.00 0.00 3.51
1672 1688 4.927267 AGGGTTTGTCATATTGGAGTGA 57.073 40.909 0.00 0.00 0.00 3.41
1673 1689 5.943416 TGTTAGGGTTTGTCATATTGGAGTG 59.057 40.000 0.00 0.00 0.00 3.51
1674 1690 6.134535 TGTTAGGGTTTGTCATATTGGAGT 57.865 37.500 0.00 0.00 0.00 3.85
1675 1691 6.659242 ACTTGTTAGGGTTTGTCATATTGGAG 59.341 38.462 0.00 0.00 0.00 3.86
1676 1692 6.548321 ACTTGTTAGGGTTTGTCATATTGGA 58.452 36.000 0.00 0.00 0.00 3.53
1677 1693 6.432783 TGACTTGTTAGGGTTTGTCATATTGG 59.567 38.462 0.00 0.00 30.78 3.16
1678 1694 7.447374 TGACTTGTTAGGGTTTGTCATATTG 57.553 36.000 0.00 0.00 30.78 1.90
1679 1695 8.650143 AATGACTTGTTAGGGTTTGTCATATT 57.350 30.769 0.00 0.00 42.13 1.28
1680 1696 8.650143 AAATGACTTGTTAGGGTTTGTCATAT 57.350 30.769 0.00 0.00 42.13 1.78
1681 1697 7.942341 AGAAATGACTTGTTAGGGTTTGTCATA 59.058 33.333 0.00 0.00 42.13 2.15
1682 1698 6.777580 AGAAATGACTTGTTAGGGTTTGTCAT 59.222 34.615 0.00 0.00 43.98 3.06
1683 1699 6.126409 AGAAATGACTTGTTAGGGTTTGTCA 58.874 36.000 0.00 0.00 38.52 3.58
1684 1700 6.635030 AGAAATGACTTGTTAGGGTTTGTC 57.365 37.500 0.00 0.00 0.00 3.18
1724 1740 6.905736 TGTGGGCTCACCTATAAATCATTTA 58.094 36.000 15.70 0.00 42.98 1.40
1755 1771 2.297033 AGTGAGTCGCATGCCAATTTTT 59.703 40.909 13.15 0.00 0.00 1.94
1781 1797 3.753272 AGTGAATGACATCGGGACTTTTG 59.247 43.478 0.00 0.00 0.00 2.44
1787 1803 3.334691 GTCAAAGTGAATGACATCGGGA 58.665 45.455 2.01 0.00 45.13 5.14
1829 1845 3.132160 CTCATTGGTCAGCTGCTAGATG 58.868 50.000 9.47 10.73 31.83 2.90
1835 1851 8.824781 CAATATATATACTCATTGGTCAGCTGC 58.175 37.037 9.47 4.04 0.00 5.25
1907 1923 3.246226 CGATGCCTCGGTTTTTATCTCTG 59.754 47.826 3.17 0.00 41.27 3.35
2038 2064 9.145865 CTGTAAAGAAAACACCTTTTAAGCAAA 57.854 29.630 0.00 0.00 35.65 3.68
2039 2065 8.524487 TCTGTAAAGAAAACACCTTTTAAGCAA 58.476 29.630 0.00 0.00 35.65 3.91
2040 2066 8.057536 TCTGTAAAGAAAACACCTTTTAAGCA 57.942 30.769 0.00 0.00 35.65 3.91
2041 2067 8.920509 TTCTGTAAAGAAAACACCTTTTAAGC 57.079 30.769 0.00 0.00 35.65 3.09
2048 2074 9.841295 TGTACTAATTCTGTAAAGAAAACACCT 57.159 29.630 0.00 0.00 0.00 4.00
2066 2092 9.855021 GGCATTCACTTGTTTATTTGTACTAAT 57.145 29.630 7.67 7.67 0.00 1.73
2067 2093 9.073475 AGGCATTCACTTGTTTATTTGTACTAA 57.927 29.630 0.00 0.00 0.00 2.24
2068 2094 8.630054 AGGCATTCACTTGTTTATTTGTACTA 57.370 30.769 0.00 0.00 0.00 1.82
2069 2095 7.524717 AGGCATTCACTTGTTTATTTGTACT 57.475 32.000 0.00 0.00 0.00 2.73
2070 2096 9.124807 GTTAGGCATTCACTTGTTTATTTGTAC 57.875 33.333 0.00 0.00 0.00 2.90
2071 2097 8.301002 GGTTAGGCATTCACTTGTTTATTTGTA 58.699 33.333 0.00 0.00 0.00 2.41
2072 2098 7.151976 GGTTAGGCATTCACTTGTTTATTTGT 58.848 34.615 0.00 0.00 0.00 2.83
2073 2099 7.151308 TGGTTAGGCATTCACTTGTTTATTTG 58.849 34.615 0.00 0.00 0.00 2.32
2074 2100 7.296628 TGGTTAGGCATTCACTTGTTTATTT 57.703 32.000 0.00 0.00 0.00 1.40
2075 2101 6.909550 TGGTTAGGCATTCACTTGTTTATT 57.090 33.333 0.00 0.00 0.00 1.40
2076 2102 6.909550 TTGGTTAGGCATTCACTTGTTTAT 57.090 33.333 0.00 0.00 0.00 1.40
2077 2103 6.909550 ATTGGTTAGGCATTCACTTGTTTA 57.090 33.333 0.00 0.00 0.00 2.01
2078 2104 5.806654 ATTGGTTAGGCATTCACTTGTTT 57.193 34.783 0.00 0.00 0.00 2.83
2079 2105 5.304101 TCAATTGGTTAGGCATTCACTTGTT 59.696 36.000 5.42 0.00 0.00 2.83
2080 2106 4.832266 TCAATTGGTTAGGCATTCACTTGT 59.168 37.500 5.42 0.00 0.00 3.16
2081 2107 5.389859 TCAATTGGTTAGGCATTCACTTG 57.610 39.130 5.42 0.00 0.00 3.16
2082 2108 5.127682 GGATCAATTGGTTAGGCATTCACTT 59.872 40.000 5.42 0.00 0.00 3.16
2083 2109 4.646492 GGATCAATTGGTTAGGCATTCACT 59.354 41.667 5.42 0.00 0.00 3.41
2084 2110 4.646492 AGGATCAATTGGTTAGGCATTCAC 59.354 41.667 5.42 0.00 0.00 3.18
2085 2111 4.870636 AGGATCAATTGGTTAGGCATTCA 58.129 39.130 5.42 0.00 0.00 2.57
2086 2112 6.959639 TTAGGATCAATTGGTTAGGCATTC 57.040 37.500 5.42 0.00 0.00 2.67
2087 2113 7.619302 TCTTTTAGGATCAATTGGTTAGGCATT 59.381 33.333 5.42 0.00 0.00 3.56
2088 2114 7.125391 TCTTTTAGGATCAATTGGTTAGGCAT 58.875 34.615 5.42 0.00 0.00 4.40
2089 2115 6.489603 TCTTTTAGGATCAATTGGTTAGGCA 58.510 36.000 5.42 0.00 0.00 4.75
2090 2116 7.503902 AGATCTTTTAGGATCAATTGGTTAGGC 59.496 37.037 5.42 0.00 43.11 3.93
2091 2117 8.986929 AGATCTTTTAGGATCAATTGGTTAGG 57.013 34.615 5.42 0.00 43.11 2.69
2105 2131 9.225436 GGCCTATCTCAAATAAGATCTTTTAGG 57.775 37.037 14.36 8.51 37.24 2.69
2106 2132 9.784531 TGGCCTATCTCAAATAAGATCTTTTAG 57.215 33.333 14.36 4.81 37.24 1.85
2107 2133 9.784531 CTGGCCTATCTCAAATAAGATCTTTTA 57.215 33.333 14.36 0.00 37.24 1.52
2108 2134 8.497745 TCTGGCCTATCTCAAATAAGATCTTTT 58.502 33.333 14.36 2.41 37.24 2.27
2109 2135 8.038862 TCTGGCCTATCTCAAATAAGATCTTT 57.961 34.615 14.36 0.00 37.24 2.52
2110 2136 7.623999 TCTGGCCTATCTCAAATAAGATCTT 57.376 36.000 13.56 13.56 37.24 2.40
2111 2137 7.811482 ATCTGGCCTATCTCAAATAAGATCT 57.189 36.000 3.32 0.00 37.24 2.75
2112 2138 7.336427 CCAATCTGGCCTATCTCAAATAAGATC 59.664 40.741 3.32 0.00 37.24 2.75
2113 2139 7.173722 CCAATCTGGCCTATCTCAAATAAGAT 58.826 38.462 3.32 0.00 39.35 2.40
2114 2140 6.101734 ACCAATCTGGCCTATCTCAAATAAGA 59.898 38.462 3.32 0.00 42.67 2.10
2115 2141 6.302269 ACCAATCTGGCCTATCTCAAATAAG 58.698 40.000 3.32 0.00 42.67 1.73
2116 2142 6.266131 ACCAATCTGGCCTATCTCAAATAA 57.734 37.500 3.32 0.00 42.67 1.40
2117 2143 5.912149 ACCAATCTGGCCTATCTCAAATA 57.088 39.130 3.32 0.00 42.67 1.40
2118 2144 4.803329 ACCAATCTGGCCTATCTCAAAT 57.197 40.909 3.32 0.00 42.67 2.32
2119 2145 4.263905 ACAACCAATCTGGCCTATCTCAAA 60.264 41.667 3.32 0.00 42.67 2.69
2120 2146 3.266772 ACAACCAATCTGGCCTATCTCAA 59.733 43.478 3.32 0.00 42.67 3.02
2121 2147 2.846206 ACAACCAATCTGGCCTATCTCA 59.154 45.455 3.32 0.00 42.67 3.27
2122 2148 3.567478 ACAACCAATCTGGCCTATCTC 57.433 47.619 3.32 0.00 42.67 2.75
2123 2149 4.298626 TCTACAACCAATCTGGCCTATCT 58.701 43.478 3.32 0.00 42.67 1.98
2124 2150 4.345257 TCTCTACAACCAATCTGGCCTATC 59.655 45.833 3.32 0.00 42.67 2.08
2125 2151 4.298626 TCTCTACAACCAATCTGGCCTAT 58.701 43.478 3.32 0.00 42.67 2.57
2126 2152 3.719871 TCTCTACAACCAATCTGGCCTA 58.280 45.455 3.32 0.00 42.67 3.93
2127 2153 2.551270 TCTCTACAACCAATCTGGCCT 58.449 47.619 3.32 0.00 42.67 5.19
2128 2154 3.567478 ATCTCTACAACCAATCTGGCC 57.433 47.619 0.00 0.00 42.67 5.36
2129 2155 5.049129 GCAATATCTCTACAACCAATCTGGC 60.049 44.000 0.00 0.00 42.67 4.85
2130 2156 6.017605 GTGCAATATCTCTACAACCAATCTGG 60.018 42.308 0.00 0.00 45.02 3.86
2131 2157 6.539826 TGTGCAATATCTCTACAACCAATCTG 59.460 38.462 0.00 0.00 0.00 2.90
2132 2158 6.653020 TGTGCAATATCTCTACAACCAATCT 58.347 36.000 0.00 0.00 0.00 2.40
2133 2159 6.925610 TGTGCAATATCTCTACAACCAATC 57.074 37.500 0.00 0.00 0.00 2.67
2134 2160 7.886629 AATGTGCAATATCTCTACAACCAAT 57.113 32.000 0.00 0.00 0.00 3.16
2135 2161 8.978874 ATAATGTGCAATATCTCTACAACCAA 57.021 30.769 0.00 0.00 0.00 3.67
2244 2270 0.464870 TTGGAACCCTCGTCGTTTGA 59.535 50.000 0.00 0.00 0.00 2.69
2274 2300 6.744112 ACTAAACTTGATGAATTTTTGCCGA 58.256 32.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.