AutoCloner

Multiple sequence alignment - TraesCS7B01G068000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G068000	chr7B	100.000	3711	0	0	1	3711	73167768	73171478	0.000000e+00	6854
1	TraesCS7B01G068000	chr7B	95.896	2193	71	5	1	2193	517902327	517904500	0.000000e+00	3533
2	TraesCS7B01G068000	chr7B	95.960	99	4	0	3613	3711	528868686	528868784	1.070000e-35	161
3	TraesCS7B01G068000	chr2B	95.145	3625	150	15	1	3615	419938354	419941962	0.000000e+00	5696
4	TraesCS7B01G068000	chr2B	94.502	2601	123	11	1	2586	528809706	528807111	0.000000e+00	3993
5	TraesCS7B01G068000	chr2B	90.265	565	37	6	3049	3609	528797147	528796597	0.000000e+00	723
6	TraesCS7B01G068000	chr2B	90.704	398	22	4	2582	2978	528797549	528797166	1.980000e-142	516
7	TraesCS7B01G068000	chr6B	95.071	3327	143	11	297	3615	617031452	617034765	0.000000e+00	5216
8	TraesCS7B01G068000	chr6B	95.078	1483	69	3	1202	2681	676703236	676704717	0.000000e+00	2331
9	TraesCS7B01G068000	chr6B	96.036	1211	44	3	1	1208	676683456	676684665	0.000000e+00	1967
10	TraesCS7B01G068000	chr6B	91.791	938	61	8	2679	3612	676708372	676709297	0.000000e+00	1291
11	TraesCS7B01G068000	chr6B	92.587	715	29	10	2254	2962	138658386	138659082	0.000000e+00	1005
12	TraesCS7B01G068000	chr3B	98.500	2533	33	2	1	2529	766341735	766344266	0.000000e+00	4462
13	TraesCS7B01G068000	chr3B	96.854	1049	27	4	2568	3615	766344267	766345310	0.000000e+00	1749
14	TraesCS7B01G068000	chr1B	94.151	2684	124	11	311	2983	344040425	344043086	0.000000e+00	4056
15	TraesCS7B01G068000	chr1B	94.157	445	18	3	3047	3488	344043098	344043537	0.000000e+00	671
16	TraesCS7B01G068000	chr4B	93.132	1791	88	13	1196	2978	43564379	43562616	0.000000e+00	2593
17	TraesCS7B01G068000	chr4B	95.677	1203	49	2	1	1201	43573994	43572793	0.000000e+00	1930
18	TraesCS7B01G068000	chr4B	95.594	1203	50	2	1	1201	43587860	43586659	0.000000e+00	1925
19	TraesCS7B01G068000	chr4B	96.559	494	15	2	1195	1688	43578259	43577768	0.000000e+00	817
20	TraesCS7B01G068000	chr4B	92.430	568	34	4	3049	3613	43562597	43562036	0.000000e+00	802
21	TraesCS7B01G068000	chr7D	97.748	1421	30	1	1	1419	83758764	83760184	0.000000e+00	2446
22	TraesCS7B01G068000	chr7D	95.088	1018	37	6	2601	3615	83761286	83762293	0.000000e+00	1591
23	TraesCS7B01G068000	chr7D	93.140	758	37	7	2875	3628	366437204	366436458	0.000000e+00	1098
24	TraesCS7B01G068000	chr7D	98.990	99	1	0	3613	3711	113578832	113578930	1.060000e-40	178
25	TraesCS7B01G068000	chr7D	95.960	99	4	0	3613	3711	500771337	500771435	1.070000e-35	161
26	TraesCS7B01G068000	chr2D	94.882	1016	37	8	2601	3612	238090079	238089075	0.000000e+00	1574
27	TraesCS7B01G068000	chr2D	97.636	719	17	0	1526	2244	238091179	238090461	0.000000e+00	1234
28	TraesCS7B01G068000	chrUn	92.867	715	27	10	2254	2962	194984904	194984208	0.000000e+00	1016
29	TraesCS7B01G068000	chr7A	95.960	99	4	0	3613	3711	566785812	566785910	1.070000e-35	161

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G068000	chr7B	73167768	73171478	3710	False	6854.0	6854	100.0000	1	3711	1	chr7B.!!$F1	3710
1	TraesCS7B01G068000	chr7B	517902327	517904500	2173	False	3533.0	3533	95.8960	1	2193	1	chr7B.!!$F2	2192
2	TraesCS7B01G068000	chr2B	419938354	419941962	3608	False	5696.0	5696	95.1450	1	3615	1	chr2B.!!$F1	3614
3	TraesCS7B01G068000	chr2B	528807111	528809706	2595	True	3993.0	3993	94.5020	1	2586	1	chr2B.!!$R1	2585
4	TraesCS7B01G068000	chr2B	528796597	528797549	952	True	619.5	723	90.4845	2582	3609	2	chr2B.!!$R2	1027
5	TraesCS7B01G068000	chr6B	617031452	617034765	3313	False	5216.0	5216	95.0710	297	3615	1	chr6B.!!$F2	3318
6	TraesCS7B01G068000	chr6B	676683456	676684665	1209	False	1967.0	1967	96.0360	1	1208	1	chr6B.!!$F3	1207
7	TraesCS7B01G068000	chr6B	676703236	676709297	6061	False	1811.0	2331	93.4345	1202	3612	2	chr6B.!!$F4	2410
8	TraesCS7B01G068000	chr6B	138658386	138659082	696	False	1005.0	1005	92.5870	2254	2962	1	chr6B.!!$F1	708
9	TraesCS7B01G068000	chr3B	766341735	766345310	3575	False	3105.5	4462	97.6770	1	3615	2	chr3B.!!$F1	3614
10	TraesCS7B01G068000	chr1B	344040425	344043537	3112	False	2363.5	4056	94.1540	311	3488	2	chr1B.!!$F1	3177
11	TraesCS7B01G068000	chr4B	43586659	43587860	1201	True	1925.0	1925	95.5940	1	1201	1	chr4B.!!$R1	1200
12	TraesCS7B01G068000	chr4B	43562036	43564379	2343	True	1697.5	2593	92.7810	1196	3613	2	chr4B.!!$R2	2417
13	TraesCS7B01G068000	chr4B	43572793	43578259	5466	True	1373.5	1930	96.1180	1	1688	2	chr4B.!!$R3	1687
14	TraesCS7B01G068000	chr7D	83758764	83762293	3529	False	2018.5	2446	96.4180	1	3615	2	chr7D.!!$F3	3614
15	TraesCS7B01G068000	chr7D	366436458	366437204	746	True	1098.0	1098	93.1400	2875	3628	1	chr7D.!!$R1	753
16	TraesCS7B01G068000	chr2D	238089075	238091179	2104	True	1404.0	1574	96.2590	1526	3612	2	chr2D.!!$R1	2086
17	TraesCS7B01G068000	chrUn	194984208	194984904	696	True	1016.0	1016	92.8670	2254	2962	1	chrUn.!!$R1	708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
799	5077	3.401033	TCGGAATGAACTTGCTCAAGA	57.599	42.857	15.74	0.0	40.79	3.02	F
2065	6350	6.604795	AGTGAATTGTCTAGGCTTGCATTTAT	59.395	34.615	0.00	0.0	0.00	1.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2065	6350	0.606096	TTCAACGATCTCGCTCCCAA	59.394	50.0	0.0	0.0	44.43	4.12	R
3684	11851	0.178970	AATGGCAGGATCATCAGGGC	60.179	55.0	0.0	0.0	0.00	5.19	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
799	5077	3.401033	TCGGAATGAACTTGCTCAAGA	57.599	42.857	15.74	0.00	40.79	3.02
2065	6350	6.604795	AGTGAATTGTCTAGGCTTGCATTTAT	59.395	34.615	0.00	0.00	0.00	1.40
2199	6484	5.247862	TGTCCGGTATCCCTTTTTCTAAAC	58.752	41.667	0.00	0.00	0.00	2.01
2200	6485	5.013391	TGTCCGGTATCCCTTTTTCTAAACT	59.987	40.000	0.00	0.00	0.00	2.66
2785	10944	7.507616	ACAAAACCCACCTCATTTTACTATTGA	59.492	33.333	0.00	0.00	0.00	2.57
2834	10993	5.016173	AGCATGGAGTAGATCTCATCCTAC	58.984	45.833	21.02	13.07	44.40	3.18
2915	11075	6.022163	AGAGAGTGCTTTTCATTTCATTGG	57.978	37.500	0.00	0.00	0.00	3.16
3098	11260	9.113876	GTGTGTTTCTTTATCCTCATTTTAACG	57.886	33.333	0.00	0.00	0.00	3.18
3303	11466	2.287728	TGTCGTTGAATTCCGAGTTCGA	60.288	45.455	7.00	4.07	43.02	3.71
3344	11509	7.739498	AAATGTGTAATCGTTAAGGTTGAGT	57.261	32.000	0.00	0.00	0.00	3.41
3345	11510	6.721571	ATGTGTAATCGTTAAGGTTGAGTG	57.278	37.500	0.00	0.00	0.00	3.51
3615	11782	5.067273	TGAACGAAACAAACACCTCCATAT	58.933	37.500	0.00	0.00	0.00	1.78
3616	11783	5.180492	TGAACGAAACAAACACCTCCATATC	59.820	40.000	0.00	0.00	0.00	1.63
3617	11784	4.906618	ACGAAACAAACACCTCCATATCT	58.093	39.130	0.00	0.00	0.00	1.98
3618	11785	4.935808	ACGAAACAAACACCTCCATATCTC	59.064	41.667	0.00	0.00	0.00	2.75
3619	11786	4.935205	CGAAACAAACACCTCCATATCTCA	59.065	41.667	0.00	0.00	0.00	3.27
3620	11787	5.586243	CGAAACAAACACCTCCATATCTCAT	59.414	40.000	0.00	0.00	0.00	2.90
3621	11788	6.238211	CGAAACAAACACCTCCATATCTCATC	60.238	42.308	0.00	0.00	0.00	2.92
3622	11789	5.698741	ACAAACACCTCCATATCTCATCA	57.301	39.130	0.00	0.00	0.00	3.07
3623	11790	5.678583	ACAAACACCTCCATATCTCATCAG	58.321	41.667	0.00	0.00	0.00	2.90
3627	11794	5.923204	ACACCTCCATATCTCATCAGAAAC	58.077	41.667	0.00	0.00	30.24	2.78
3628	11795	5.664908	ACACCTCCATATCTCATCAGAAACT	59.335	40.000	0.00	0.00	30.24	2.66
3629	11796	5.990386	CACCTCCATATCTCATCAGAAACTG	59.010	44.000	0.00	0.00	30.24	3.16
3630	11797	5.664908	ACCTCCATATCTCATCAGAAACTGT	59.335	40.000	0.00	0.00	32.61	3.55
3631	11798	6.157645	ACCTCCATATCTCATCAGAAACTGTT	59.842	38.462	0.00	0.00	32.61	3.16
3632	11799	6.482641	CCTCCATATCTCATCAGAAACTGTTG	59.517	42.308	0.00	0.00	33.84	3.33
3633	11800	5.819379	TCCATATCTCATCAGAAACTGTTGC	59.181	40.000	0.00	0.00	32.93	4.17
3634	11801	5.821470	CCATATCTCATCAGAAACTGTTGCT	59.179	40.000	0.00	0.00	32.93	3.91
3635	11802	6.988580	CCATATCTCATCAGAAACTGTTGCTA	59.011	38.462	0.00	0.00	32.93	3.49
3636	11803	7.042187	CCATATCTCATCAGAAACTGTTGCTAC	60.042	40.741	0.00	0.00	32.93	3.58
3637	11804	5.213891	TCTCATCAGAAACTGTTGCTACA	57.786	39.130	0.00	0.03	32.93	2.74
3638	11805	5.873712	ATCTCATCAGAAACTGTTGCTACAG	59.126	40.000	24.01	24.01	43.89	2.74
3639	11806	6.295518	ATCTCATCAGAAACTGTTGCTACAGA	60.296	38.462	30.71	11.12	42.39	3.41
3640	11807	7.741921	ATCTCATCAGAAACTGTTGCTACAGAA	60.742	37.037	30.71	11.47	42.39	3.02
3655	11822	0.590195	CAGAAGCACTGTTGTCCAGC	59.410	55.000	3.29	0.00	45.68	4.85
3656	11823	0.471617	AGAAGCACTGTTGTCCAGCT	59.528	50.000	0.00	0.00	45.68	4.24
3657	11824	3.502164	AAGCACTGTTGTCCAGCTT	57.498	47.368	0.00	0.00	45.68	3.74
3658	11825	2.104792	AGAAGCACTGTTGTCCAGCTTA	59.895	45.455	0.00	0.00	44.73	3.09
3659	11826	2.638480	AGCACTGTTGTCCAGCTTAA	57.362	45.000	0.00	0.00	45.68	1.85
3660	11827	2.930950	AGCACTGTTGTCCAGCTTAAA	58.069	42.857	0.00	0.00	45.68	1.52
3661	11828	2.880890	AGCACTGTTGTCCAGCTTAAAG	59.119	45.455	0.00	0.00	45.68	1.85
3662	11829	2.878406	GCACTGTTGTCCAGCTTAAAGA	59.122	45.455	0.00	0.00	45.68	2.52
3663	11830	3.315191	GCACTGTTGTCCAGCTTAAAGAA	59.685	43.478	0.00	0.00	45.68	2.52
3664	11831	4.022849	GCACTGTTGTCCAGCTTAAAGAAT	60.023	41.667	0.00	0.00	45.68	2.40
3665	11832	5.693814	CACTGTTGTCCAGCTTAAAGAATC	58.306	41.667	0.00	0.00	45.68	2.52
3666	11833	5.239306	CACTGTTGTCCAGCTTAAAGAATCA	59.761	40.000	0.00	0.00	45.68	2.57
3667	11834	5.471456	ACTGTTGTCCAGCTTAAAGAATCAG	59.529	40.000	0.00	0.00	45.68	2.90
3668	11835	4.761739	TGTTGTCCAGCTTAAAGAATCAGG	59.238	41.667	0.00	0.00	0.00	3.86
3669	11836	4.908601	TGTCCAGCTTAAAGAATCAGGA	57.091	40.909	0.00	0.00	0.00	3.86
3670	11837	5.241403	TGTCCAGCTTAAAGAATCAGGAA	57.759	39.130	0.00	0.00	0.00	3.36
3671	11838	5.819991	TGTCCAGCTTAAAGAATCAGGAAT	58.180	37.500	0.00	0.00	0.00	3.01
3672	11839	5.882557	TGTCCAGCTTAAAGAATCAGGAATC	59.117	40.000	0.00	0.00	0.00	2.52
3673	11840	5.882557	GTCCAGCTTAAAGAATCAGGAATCA	59.117	40.000	0.00	0.00	0.00	2.57
3674	11841	6.375455	GTCCAGCTTAAAGAATCAGGAATCAA	59.625	38.462	0.00	0.00	0.00	2.57
3675	11842	7.067981	GTCCAGCTTAAAGAATCAGGAATCAAT	59.932	37.037	0.00	0.00	0.00	2.57
3676	11843	7.067859	TCCAGCTTAAAGAATCAGGAATCAATG	59.932	37.037	0.00	0.00	0.00	2.82
3677	11844	7.147949	CCAGCTTAAAGAATCAGGAATCAATGT	60.148	37.037	0.00	0.00	0.00	2.71
3678	11845	8.896744	CAGCTTAAAGAATCAGGAATCAATGTA	58.103	33.333	0.00	0.00	0.00	2.29
3679	11846	9.638176	AGCTTAAAGAATCAGGAATCAATGTAT	57.362	29.630	0.00	0.00	0.00	2.29
3684	11851	8.915057	AAGAATCAGGAATCAATGTATACCTG	57.085	34.615	0.00	0.00	44.02	4.00
3685	11852	6.939163	AGAATCAGGAATCAATGTATACCTGC	59.061	38.462	0.00	0.00	42.86	4.85
3686	11853	4.973168	TCAGGAATCAATGTATACCTGCC	58.027	43.478	0.00	0.00	42.86	4.85
3687	11854	4.074970	CAGGAATCAATGTATACCTGCCC	58.925	47.826	0.00	1.41	38.40	5.36
3688	11855	3.983410	AGGAATCAATGTATACCTGCCCT	59.017	43.478	0.00	3.39	0.00	5.19
3689	11856	4.074970	GGAATCAATGTATACCTGCCCTG	58.925	47.826	0.00	0.00	0.00	4.45
3690	11857	4.202461	GGAATCAATGTATACCTGCCCTGA	60.202	45.833	0.00	0.00	0.00	3.86
3691	11858	5.515534	GGAATCAATGTATACCTGCCCTGAT	60.516	44.000	0.00	0.00	0.00	2.90
3692	11859	4.356405	TCAATGTATACCTGCCCTGATG	57.644	45.455	0.00	0.00	0.00	3.07
3693	11860	3.973305	TCAATGTATACCTGCCCTGATGA	59.027	43.478	0.00	0.00	0.00	2.92
3694	11861	4.598807	TCAATGTATACCTGCCCTGATGAT	59.401	41.667	0.00	0.00	0.00	2.45
3695	11862	4.833478	ATGTATACCTGCCCTGATGATC	57.167	45.455	0.00	0.00	0.00	2.92
3696	11863	2.906389	TGTATACCTGCCCTGATGATCC	59.094	50.000	0.00	0.00	0.00	3.36
3697	11864	2.429933	ATACCTGCCCTGATGATCCT	57.570	50.000	0.00	0.00	0.00	3.24
3698	11865	1.427809	TACCTGCCCTGATGATCCTG	58.572	55.000	0.00	0.00	0.00	3.86
3699	11866	1.228184	CCTGCCCTGATGATCCTGC	60.228	63.158	0.00	0.00	0.00	4.85
3700	11867	1.228184	CTGCCCTGATGATCCTGCC	60.228	63.158	0.00	0.00	0.00	4.85
3701	11868	1.991339	CTGCCCTGATGATCCTGCCA	61.991	60.000	0.00	0.00	0.00	4.92
3702	11869	1.358051	TGCCCTGATGATCCTGCCAT	61.358	55.000	0.00	0.00	0.00	4.40
3703	11870	0.178970	GCCCTGATGATCCTGCCATT	60.179	55.000	0.00	0.00	0.00	3.16
3704	11871	1.074405	GCCCTGATGATCCTGCCATTA	59.926	52.381	0.00	0.00	0.00	1.90
3705	11872	2.489619	GCCCTGATGATCCTGCCATTAA	60.490	50.000	0.00	0.00	0.00	1.40
3706	11873	3.418995	CCCTGATGATCCTGCCATTAAG	58.581	50.000	0.00	0.00	0.00	1.85
3707	11874	3.073503	CCCTGATGATCCTGCCATTAAGA	59.926	47.826	0.00	0.00	0.00	2.10
3708	11875	4.263816	CCCTGATGATCCTGCCATTAAGAT	60.264	45.833	0.00	0.00	0.00	2.40
3709	11876	5.322754	CCTGATGATCCTGCCATTAAGATT	58.677	41.667	0.00	0.00	0.00	2.40
3710	11877	5.773680	CCTGATGATCCTGCCATTAAGATTT	59.226	40.000	0.00	0.00	0.00	2.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
73	4339	9.853555	CCACTATTGAGATGATCTAGTGAATAC	57.146	37.037	19.52	0.00	38.24	1.89
86	4359	7.798596	AGCATCTTTTACCACTATTGAGATG	57.201	36.000	0.00	0.00	41.01	2.90
799	5077	6.441924	AGCAGCCCTATGTCTATTATACATGT	59.558	38.462	2.69	2.69	38.05	3.21
1802	6086	1.210155	GCAAGTGTCAATGGACCGC	59.790	57.895	0.00	0.00	43.65	5.68
2065	6350	0.606096	TTCAACGATCTCGCTCCCAA	59.394	50.000	0.00	0.00	44.43	4.12
2834	10993	9.801873	CAAGAACATAAACTAAAATATGGTGGG	57.198	33.333	0.00	0.00	34.52	4.61
2867	11026	4.452455	AGCTAACACAGACTACAATGTTGC	59.548	41.667	0.00	0.00	36.05	4.17
2870	11029	7.176865	TCTCTTAGCTAACACAGACTACAATGT	59.823	37.037	0.86	0.00	0.00	2.71
2915	11075	7.559590	AGGAAAATGATGTATACTGCAAGAC	57.440	36.000	4.17	0.00	37.43	3.01
3098	11260	1.003116	CTCATCTGCCAATAAGCACGC	60.003	52.381	0.00	0.00	38.00	5.34
3337	11502	7.712797	TCTTTTAACCAGAATTTCACTCAACC	58.287	34.615	0.00	0.00	0.00	3.77
3340	11505	8.463930	ACATCTTTTAACCAGAATTTCACTCA	57.536	30.769	0.00	0.00	0.00	3.41
3344	11509	9.748708	CAAAGACATCTTTTAACCAGAATTTCA	57.251	29.630	4.08	0.00	43.07	2.69
3345	11510	8.703336	GCAAAGACATCTTTTAACCAGAATTTC	58.297	33.333	4.08	0.00	43.07	2.17
3539	11706	1.270094	CGGACTGTAACAGCACCAGAA	60.270	52.381	0.00	0.00	34.37	3.02
3615	11782	5.213891	TGTAGCAACAGTTTCTGATGAGA	57.786	39.130	10.36	0.00	36.57	3.27
3616	11783	5.527511	CTGTAGCAACAGTTTCTGATGAG	57.472	43.478	10.36	0.00	46.76	2.90
3644	11811	8.651859	TTCCTGATTCTTTAAGCTGGACAACAG	61.652	40.741	2.06	0.00	45.36	3.16
3645	11812	4.761739	CCTGATTCTTTAAGCTGGACAACA	59.238	41.667	0.00	0.00	41.26	3.33
3646	11813	5.003804	TCCTGATTCTTTAAGCTGGACAAC	58.996	41.667	0.00	0.00	42.20	3.32
3647	11814	5.241403	TCCTGATTCTTTAAGCTGGACAA	57.759	39.130	0.00	0.00	42.20	3.18
3648	11815	4.908601	TCCTGATTCTTTAAGCTGGACA	57.091	40.909	0.00	0.00	42.20	4.02
3649	11816	5.882557	TGATTCCTGATTCTTTAAGCTGGAC	59.117	40.000	2.06	0.00	45.36	4.02
3650	11817	6.065976	TGATTCCTGATTCTTTAAGCTGGA	57.934	37.500	0.00	0.00	44.43	3.86
3651	11818	6.764308	TTGATTCCTGATTCTTTAAGCTGG	57.236	37.500	0.00	0.00	40.41	4.85
3652	11819	7.769220	ACATTGATTCCTGATTCTTTAAGCTG	58.231	34.615	0.00	0.00	0.00	4.24
3653	11820	7.951347	ACATTGATTCCTGATTCTTTAAGCT	57.049	32.000	0.00	0.00	0.00	3.74
3658	11825	9.347240	CAGGTATACATTGATTCCTGATTCTTT	57.653	33.333	5.01	0.00	43.57	2.52
3659	11826	7.446625	GCAGGTATACATTGATTCCTGATTCTT	59.553	37.037	17.67	0.00	43.57	2.52
3660	11827	6.939163	GCAGGTATACATTGATTCCTGATTCT	59.061	38.462	17.67	0.00	43.57	2.40
3661	11828	6.150140	GGCAGGTATACATTGATTCCTGATTC	59.850	42.308	17.67	8.55	43.57	2.52
3662	11829	6.006449	GGCAGGTATACATTGATTCCTGATT	58.994	40.000	17.67	0.00	43.57	2.57
3663	11830	5.515534	GGGCAGGTATACATTGATTCCTGAT	60.516	44.000	17.67	0.00	43.57	2.90
3664	11831	4.202461	GGGCAGGTATACATTGATTCCTGA	60.202	45.833	17.67	0.00	43.57	3.86
3665	11832	4.074970	GGGCAGGTATACATTGATTCCTG	58.925	47.826	5.01	12.90	43.66	3.86
3666	11833	3.983410	AGGGCAGGTATACATTGATTCCT	59.017	43.478	5.01	7.66	0.00	3.36
3667	11834	4.074970	CAGGGCAGGTATACATTGATTCC	58.925	47.826	5.01	5.82	0.00	3.01
3668	11835	4.973168	TCAGGGCAGGTATACATTGATTC	58.027	43.478	5.01	0.00	0.00	2.52
3669	11836	5.073554	TCATCAGGGCAGGTATACATTGATT	59.926	40.000	5.01	0.00	0.00	2.57
3670	11837	4.598807	TCATCAGGGCAGGTATACATTGAT	59.401	41.667	5.01	1.08	0.00	2.57
3671	11838	3.973305	TCATCAGGGCAGGTATACATTGA	59.027	43.478	5.01	0.00	0.00	2.57
3672	11839	4.356405	TCATCAGGGCAGGTATACATTG	57.644	45.455	5.01	3.87	0.00	2.82
3673	11840	4.018960	GGATCATCAGGGCAGGTATACATT	60.019	45.833	5.01	0.00	0.00	2.71
3674	11841	3.521126	GGATCATCAGGGCAGGTATACAT	59.479	47.826	5.01	0.00	0.00	2.29
3675	11842	2.906389	GGATCATCAGGGCAGGTATACA	59.094	50.000	5.01	0.00	0.00	2.29
3676	11843	3.055530	CAGGATCATCAGGGCAGGTATAC	60.056	52.174	0.00	0.00	0.00	1.47
3677	11844	3.176411	CAGGATCATCAGGGCAGGTATA	58.824	50.000	0.00	0.00	0.00	1.47
3678	11845	1.983691	CAGGATCATCAGGGCAGGTAT	59.016	52.381	0.00	0.00	0.00	2.73
3679	11846	1.427809	CAGGATCATCAGGGCAGGTA	58.572	55.000	0.00	0.00	0.00	3.08
3680	11847	1.992519	GCAGGATCATCAGGGCAGGT	61.993	60.000	0.00	0.00	0.00	4.00
3681	11848	1.228184	GCAGGATCATCAGGGCAGG	60.228	63.158	0.00	0.00	0.00	4.85
3682	11849	1.228184	GGCAGGATCATCAGGGCAG	60.228	63.158	0.00	0.00	0.00	4.85
3683	11850	1.358051	ATGGCAGGATCATCAGGGCA	61.358	55.000	6.51	6.51	38.44	5.36
3684	11851	0.178970	AATGGCAGGATCATCAGGGC	60.179	55.000	0.00	0.00	0.00	5.19
3685	11852	3.073503	TCTTAATGGCAGGATCATCAGGG	59.926	47.826	0.00	0.00	0.00	4.45
3686	11853	4.362470	TCTTAATGGCAGGATCATCAGG	57.638	45.455	0.00	0.00	0.00	3.86
3687	11854	6.896021	AAATCTTAATGGCAGGATCATCAG	57.104	37.500	0.00	0.00	0.00	2.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.