Multiple sequence alignment - TraesCS7B01G067800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G067800 chr7B 100.000 3816 0 0 1 3816 73137759 73133944 0.000000e+00 7047
1 TraesCS7B01G067800 chr7D 92.445 3481 200 23 1 3447 113449183 113445732 0.000000e+00 4913
2 TraesCS7B01G067800 chr7D 90.323 372 13 11 3447 3816 113445701 113445351 2.080000e-127 466
3 TraesCS7B01G067800 chr7A 91.900 2531 143 25 1304 3816 118464060 118461574 0.000000e+00 3482
4 TraesCS7B01G067800 chr7A 89.233 808 51 8 493 1266 118464870 118464065 0.000000e+00 977
5 TraesCS7B01G067800 chr1B 88.506 2088 169 31 493 2551 192276692 192274647 0.000000e+00 2460
6 TraesCS7B01G067800 chr1A 88.190 2083 169 32 490 2542 146944245 146946280 0.000000e+00 2412
7 TraesCS7B01G067800 chr1A 82.937 463 57 16 2536 2981 146946341 146946798 7.680000e-107 398
8 TraesCS7B01G067800 chr1D 89.599 1221 107 7 1336 2551 143258445 143257240 0.000000e+00 1533
9 TraesCS7B01G067800 chr1D 85.894 872 72 20 493 1340 143263872 143263028 0.000000e+00 881
10 TraesCS7B01G067800 chr1D 89.116 294 28 4 2545 2837 143257179 143256889 2.800000e-96 363
11 TraesCS7B01G067800 chr6A 85.162 802 74 18 493 1267 588864228 588863445 0.000000e+00 780
12 TraesCS7B01G067800 chr6B 82.210 371 37 13 493 839 665733897 665733532 3.730000e-75 292


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G067800 chr7B 73133944 73137759 3815 True 7047.0 7047 100.0000 1 3816 1 chr7B.!!$R1 3815
1 TraesCS7B01G067800 chr7D 113445351 113449183 3832 True 2689.5 4913 91.3840 1 3816 2 chr7D.!!$R1 3815
2 TraesCS7B01G067800 chr7A 118461574 118464870 3296 True 2229.5 3482 90.5665 493 3816 2 chr7A.!!$R1 3323
3 TraesCS7B01G067800 chr1B 192274647 192276692 2045 True 2460.0 2460 88.5060 493 2551 1 chr1B.!!$R1 2058
4 TraesCS7B01G067800 chr1A 146944245 146946798 2553 False 1405.0 2412 85.5635 490 2981 2 chr1A.!!$F1 2491
5 TraesCS7B01G067800 chr1D 143256889 143258445 1556 True 948.0 1533 89.3575 1336 2837 2 chr1D.!!$R2 1501
6 TraesCS7B01G067800 chr1D 143263028 143263872 844 True 881.0 881 85.8940 493 1340 1 chr1D.!!$R1 847
7 TraesCS7B01G067800 chr6A 588863445 588864228 783 True 780.0 780 85.1620 493 1267 1 chr6A.!!$R1 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.043822 GCTCGATGTGATTTCGTCGC 60.044 55.000 3.85 0.0 43.69 5.19 F
1010 1062 0.037975 CTTGCACAAATGGCCTCCAC 60.038 55.000 3.32 0.0 35.80 4.02 F
1088 1140 0.035056 ATGAAAGTGGCCCCTTCGAG 60.035 55.000 0.00 0.0 0.00 4.04 F
2609 2750 1.878775 GTGGAGGTGAGCAATGTGC 59.121 57.895 0.00 0.0 45.46 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1088 1140 1.073199 CTATGGTCGGCCCCATTCC 59.927 63.158 17.57 4.38 42.7 3.01 R
2307 2377 1.539388 TCGATGGTGATGTTTGCAACC 59.461 47.619 0.00 0.00 0.0 3.77 R
2674 2815 1.800805 CTATCCCATAGCAAGGCACG 58.199 55.000 0.00 0.00 0.0 5.34 R
3481 3682 0.389817 CTCGTCTCATCGGTTTGGCA 60.390 55.000 0.00 0.00 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.268265 TGCTCGATGTGATTTCGTCG 58.732 50.000 0.00 0.00 44.86 5.12
23 24 0.043822 GCTCGATGTGATTTCGTCGC 60.044 55.000 3.85 0.00 43.69 5.19
40 41 0.806102 CGCAAGTACACGGCTAGCAT 60.806 55.000 18.24 0.07 0.00 3.79
41 42 1.535226 CGCAAGTACACGGCTAGCATA 60.535 52.381 18.24 0.00 0.00 3.14
58 59 4.701765 AGCATATGCCCGATGAGAATATC 58.298 43.478 23.96 0.00 43.38 1.63
96 97 3.131396 GCAACTAACGGGATATCAGTGG 58.869 50.000 4.83 0.00 0.00 4.00
102 103 2.520536 GGGATATCAGTGGCGGGCT 61.521 63.158 4.83 0.00 0.00 5.19
151 152 3.945285 CACCCGCCACTGATAATTAGTTT 59.055 43.478 0.00 0.00 0.00 2.66
153 154 5.587043 CACCCGCCACTGATAATTAGTTTTA 59.413 40.000 0.00 0.00 0.00 1.52
155 156 5.587043 CCCGCCACTGATAATTAGTTTTACA 59.413 40.000 0.00 0.00 0.00 2.41
160 161 8.336080 GCCACTGATAATTAGTTTTACAGTAGC 58.664 37.037 0.00 0.00 35.44 3.58
163 164 8.472413 ACTGATAATTAGTTTTACAGTAGCGGA 58.528 33.333 0.00 0.00 35.77 5.54
174 175 4.853142 TAGCGGACGGGATGGGCT 62.853 66.667 0.00 0.00 37.73 5.19
223 225 5.276461 TGTCCCATATCTGTCACACATAC 57.724 43.478 0.00 0.00 0.00 2.39
227 229 3.554960 CCATATCTGTCACACATACGGGG 60.555 52.174 0.00 0.00 0.00 5.73
242 244 5.608015 ACATACGGGGTGTATATAAAGGGTT 59.392 40.000 0.00 0.00 41.93 4.11
250 252 5.756833 GGTGTATATAAAGGGTTTCGGACAG 59.243 44.000 0.00 0.00 0.00 3.51
251 253 5.235831 GTGTATATAAAGGGTTTCGGACAGC 59.764 44.000 0.00 0.00 0.00 4.40
306 308 0.318120 GGTGACGTTTTAGGGTCCGA 59.682 55.000 0.00 0.00 32.19 4.55
308 310 2.613725 GGTGACGTTTTAGGGTCCGAAT 60.614 50.000 0.00 0.00 32.19 3.34
316 318 3.918294 TTAGGGTCCGAATGTTTAGGG 57.082 47.619 0.00 0.00 0.00 3.53
383 385 5.353394 TTCATACCGGCAAGAAGATAACT 57.647 39.130 0.00 0.00 0.00 2.24
392 394 4.434520 GCAAGAAGATAACTACCTCGCTT 58.565 43.478 0.00 0.00 0.00 4.68
410 412 3.617263 CGCTTAAACTGTTAGCGGAAGAT 59.383 43.478 23.20 0.00 44.06 2.40
414 416 6.073711 GCTTAAACTGTTAGCGGAAGATATCC 60.074 42.308 0.00 0.00 45.57 2.59
418 420 2.367567 TGTTAGCGGAAGATATCCCCAC 59.632 50.000 11.10 3.02 46.39 4.61
419 421 2.633481 GTTAGCGGAAGATATCCCCACT 59.367 50.000 11.10 9.14 46.39 4.00
442 444 0.320374 TCGGCAACCTTGAATCGAGT 59.680 50.000 0.00 0.00 0.00 4.18
542 546 6.426980 TGATGATTTGTCATTAGCACTGAC 57.573 37.500 6.42 6.42 42.68 3.51
572 576 4.273480 CACGATGATTCATTACTTCCACCC 59.727 45.833 0.00 0.00 0.00 4.61
575 579 1.597663 GATTCATTACTTCCACCCGCG 59.402 52.381 0.00 0.00 0.00 6.46
576 580 0.322322 TTCATTACTTCCACCCGCGT 59.678 50.000 4.92 0.00 0.00 6.01
587 597 2.510691 CCCGCGTGTGGGTCATAC 60.511 66.667 10.42 0.00 44.76 2.39
600 610 3.134458 GGGTCATACTACATCTGCAAGC 58.866 50.000 0.00 0.00 0.00 4.01
604 614 3.865164 TCATACTACATCTGCAAGCGTTG 59.135 43.478 0.00 0.00 0.00 4.10
675 685 7.552687 AGAAATGCATGCAATTTTCAGATGATT 59.447 29.630 32.65 17.36 31.20 2.57
690 725 1.896220 TGATTTGTCTCCACAGGCAC 58.104 50.000 0.00 0.00 32.43 5.01
716 751 2.680312 TGCTGTCAGGATCTTAGTGC 57.320 50.000 1.14 0.00 0.00 4.40
892 937 6.069731 ACCTGAGCTAAGAAGATCCAAAGATT 60.070 38.462 0.00 0.00 37.34 2.40
976 1027 2.811431 TGCACCAACAGCACATACTAAC 59.189 45.455 0.00 0.00 37.02 2.34
1010 1062 0.037975 CTTGCACAAATGGCCTCCAC 60.038 55.000 3.32 0.00 35.80 4.02
1088 1140 0.035056 ATGAAAGTGGCCCCTTCGAG 60.035 55.000 0.00 0.00 0.00 4.04
1098 1150 2.193248 CCTTCGAGGAATGGGGCC 59.807 66.667 0.00 0.00 37.67 5.80
1197 1253 5.006649 CCATGACGACACAAAGGTATGTATG 59.993 44.000 0.00 0.00 30.84 2.39
1198 1254 3.930229 TGACGACACAAAGGTATGTATGC 59.070 43.478 0.00 0.00 30.84 3.14
1437 1494 4.345288 CATGCAAATCCAGTATCACGTTG 58.655 43.478 0.00 0.00 0.00 4.10
1616 1676 5.624159 TGGATTTTGTTCAGATCTGTGAGT 58.376 37.500 21.92 3.87 0.00 3.41
1618 1678 5.702670 GGATTTTGTTCAGATCTGTGAGTGA 59.297 40.000 21.92 6.79 0.00 3.41
1694 1754 4.214332 CAGAACTCCTGCAAAGTAAACTCC 59.786 45.833 2.06 0.00 35.89 3.85
1886 1950 3.414700 GCTCCAACGGTGAGTGCG 61.415 66.667 0.00 0.00 32.31 5.34
1944 2014 4.929808 TCGAGTAGCCTTGTTTTCTTGATC 59.070 41.667 0.00 0.00 0.00 2.92
1955 2025 5.964758 TGTTTTCTTGATCACATATTGGCC 58.035 37.500 0.00 0.00 0.00 5.36
1998 2068 2.678336 CCAGGCTTTGACGTTCTATTCC 59.322 50.000 0.00 0.00 0.00 3.01
2019 2089 2.740981 CTGCACAAATCTGAGAGTGGAC 59.259 50.000 0.00 0.00 32.80 4.02
2307 2377 1.925847 GATCGCAACTCTCAAGCTCAG 59.074 52.381 0.00 0.00 0.00 3.35
2565 2706 6.724502 CGCATAGATATAATCTAGCGTGTG 57.275 41.667 20.38 11.02 44.44 3.82
2567 2708 6.747739 CGCATAGATATAATCTAGCGTGTGTT 59.252 38.462 20.38 0.00 44.44 3.32
2609 2750 1.878775 GTGGAGGTGAGCAATGTGC 59.121 57.895 0.00 0.00 45.46 4.57
2674 2815 2.761071 GCTCAGTTGCAGTAGAGCC 58.239 57.895 19.58 7.27 45.79 4.70
2684 2825 2.266055 GTAGAGCCGTGCCTTGCT 59.734 61.111 0.00 0.00 41.42 3.91
2716 2857 0.882927 TGCACAACGTCAGGCTTACC 60.883 55.000 0.00 0.00 0.00 2.85
2847 3003 6.700352 TGGCAAGGATTTGAGAATTTTTAGG 58.300 36.000 0.00 0.00 36.36 2.69
2902 3062 5.084818 TGATACGCTTCCTCTGATTTTCA 57.915 39.130 0.00 0.00 0.00 2.69
2918 3078 5.994054 TGATTTTCAGAGTGAAGTCTTCCAG 59.006 40.000 10.12 0.00 37.70 3.86
2936 3096 4.906618 TCCAGTGGAAGGATTTTGAGTAC 58.093 43.478 10.20 0.00 0.00 2.73
2940 3100 6.540189 CCAGTGGAAGGATTTTGAGTACATAG 59.460 42.308 1.68 0.00 0.00 2.23
2970 3130 2.425143 AGGATACATGCCAACACTGG 57.575 50.000 0.00 0.00 43.01 4.00
3054 3214 1.824852 TGATGAGTATCCGCTGTGTGT 59.175 47.619 0.00 0.00 32.09 3.72
3103 3268 2.422127 GAGCGGGAGATAGTAGAGCATC 59.578 54.545 0.00 0.00 0.00 3.91
3217 3382 5.057149 TCTACTCAAGCTGAAACTGGAAAC 58.943 41.667 0.00 0.00 0.00 2.78
3245 3411 5.590530 TGCTTTTTCCAAAGAAGTAGCAA 57.409 34.783 9.88 0.00 42.42 3.91
3255 3421 7.500992 TCCAAAGAAGTAGCAATACTATGAGG 58.499 38.462 0.00 0.00 32.15 3.86
3274 3443 4.528596 TGAGGACCCAAAACAAGTTCAAAA 59.471 37.500 0.00 0.00 0.00 2.44
3337 3506 3.500680 GGACGGAAAATGCAGTAAAGTGA 59.499 43.478 0.00 0.00 0.00 3.41
3406 3576 3.950397 TCTTGTTATGGCCAAAGATCGT 58.050 40.909 10.96 0.00 0.00 3.73
3434 3604 0.555769 TTCTGGGCAGAAACCAAGGT 59.444 50.000 0.00 0.00 43.79 3.50
3463 3664 6.267928 ACCATACCCTAGTATACAAGAGCAAG 59.732 42.308 5.50 0.00 37.06 4.01
3481 3682 3.493503 GCAAGCAGTACGTAGTCAGTTTT 59.506 43.478 0.00 0.00 43.93 2.43
3540 3741 1.005450 GAGGGTGGGGCAAGAATAACA 59.995 52.381 0.00 0.00 0.00 2.41
3569 3770 4.359105 TCACCAACTTACCTACAGGCTAT 58.641 43.478 0.00 0.00 39.32 2.97
3734 3938 2.636412 CCTCTTGACGACGAGCCCA 61.636 63.158 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.473609 GTGTACTTGCGACGAAATCACA 59.526 45.455 0.00 0.00 0.00 3.58
22 23 2.218953 TATGCTAGCCGTGTACTTGC 57.781 50.000 13.29 0.00 36.58 4.01
23 24 2.476619 GCATATGCTAGCCGTGTACTTG 59.523 50.000 20.64 0.13 38.21 3.16
40 41 6.062095 TCTATCGATATTCTCATCGGGCATA 58.938 40.000 5.40 0.00 46.14 3.14
41 42 4.889995 TCTATCGATATTCTCATCGGGCAT 59.110 41.667 5.40 0.00 46.14 4.40
58 59 7.111732 CGTTAGTTGCACTACTACATTCTATCG 59.888 40.741 0.00 0.00 28.93 2.92
86 87 1.004440 GGAGCCCGCCACTGATATC 60.004 63.158 0.00 0.00 0.00 1.63
102 103 1.691482 GCCTATAGGTGGTGACAGGGA 60.691 57.143 20.10 0.00 44.46 4.20
151 152 0.742505 CATCCCGTCCGCTACTGTAA 59.257 55.000 0.00 0.00 0.00 2.41
153 154 2.423898 CCATCCCGTCCGCTACTGT 61.424 63.158 0.00 0.00 0.00 3.55
155 156 2.838225 CCCATCCCGTCCGCTACT 60.838 66.667 0.00 0.00 0.00 2.57
160 161 4.530857 GACAGCCCATCCCGTCCG 62.531 72.222 0.00 0.00 0.00 4.79
163 164 2.933287 TTGGACAGCCCATCCCGT 60.933 61.111 0.00 0.00 46.10 5.28
201 203 7.184315 CCGTATGTGTGACAGATATGGGACA 62.184 48.000 25.42 1.67 40.74 4.02
205 207 3.554960 CCCCGTATGTGTGACAGATATGG 60.555 52.174 25.91 25.91 42.70 2.74
212 214 1.630223 TACACCCCGTATGTGTGACA 58.370 50.000 10.90 0.00 45.96 3.58
223 225 4.060205 CGAAACCCTTTATATACACCCCG 58.940 47.826 0.00 0.00 0.00 5.73
227 229 5.235831 GCTGTCCGAAACCCTTTATATACAC 59.764 44.000 0.00 0.00 0.00 2.90
235 237 1.228459 GGGCTGTCCGAAACCCTTT 60.228 57.895 0.00 0.00 39.42 3.11
284 286 1.609841 GGACCCTAAAACGTCACCCAG 60.610 57.143 0.00 0.00 0.00 4.45
286 288 0.671472 CGGACCCTAAAACGTCACCC 60.671 60.000 0.00 0.00 0.00 4.61
293 295 4.397103 CCCTAAACATTCGGACCCTAAAAC 59.603 45.833 0.00 0.00 0.00 2.43
306 308 4.601857 TCCTCCACTTTCTCCCTAAACATT 59.398 41.667 0.00 0.00 0.00 2.71
308 310 3.583086 CTCCTCCACTTTCTCCCTAAACA 59.417 47.826 0.00 0.00 0.00 2.83
316 318 2.155279 GCCAAACTCCTCCACTTTCTC 58.845 52.381 0.00 0.00 0.00 2.87
392 394 5.850614 GGGATATCTTCCGCTAACAGTTTA 58.149 41.667 2.05 0.00 46.52 2.01
405 407 4.254492 GCCGATTTAGTGGGGATATCTTC 58.746 47.826 2.05 0.00 0.00 2.87
410 412 2.158726 GGTTGCCGATTTAGTGGGGATA 60.159 50.000 0.00 0.00 0.00 2.59
414 416 1.472480 CAAGGTTGCCGATTTAGTGGG 59.528 52.381 0.00 0.00 0.00 4.61
418 420 3.621268 TCGATTCAAGGTTGCCGATTTAG 59.379 43.478 0.00 0.00 0.00 1.85
419 421 3.601435 TCGATTCAAGGTTGCCGATTTA 58.399 40.909 0.00 0.00 0.00 1.40
442 444 0.036306 GAGAAAGGAAAGGCGTGGGA 59.964 55.000 0.00 0.00 0.00 4.37
542 546 5.813717 AGTAATGAATCATCGTGCACATTG 58.186 37.500 18.64 13.35 31.85 2.82
545 549 4.332543 GGAAGTAATGAATCATCGTGCACA 59.667 41.667 18.64 4.45 0.00 4.57
572 576 0.171679 TGTAGTATGACCCACACGCG 59.828 55.000 3.53 3.53 0.00 6.01
575 579 3.118775 TGCAGATGTAGTATGACCCACAC 60.119 47.826 0.00 0.00 0.00 3.82
576 580 3.103742 TGCAGATGTAGTATGACCCACA 58.896 45.455 0.00 0.00 0.00 4.17
585 595 3.586100 TCAACGCTTGCAGATGTAGTA 57.414 42.857 0.00 0.00 0.00 1.82
586 596 2.455674 TCAACGCTTGCAGATGTAGT 57.544 45.000 0.00 0.00 0.00 2.73
587 597 2.475187 GCTTCAACGCTTGCAGATGTAG 60.475 50.000 0.00 0.00 0.00 2.74
675 685 2.363306 AATTGTGCCTGTGGAGACAA 57.637 45.000 0.00 0.00 46.06 3.18
690 725 6.805271 CACTAAGATCCTGACAGCAAAAATTG 59.195 38.462 0.00 0.00 0.00 2.32
716 751 6.421801 CAGTTTGGCTTTTGAGGTTATTTCAG 59.578 38.462 0.00 0.00 0.00 3.02
976 1027 3.005050 TGTGCAAGAAGAAGAATGCCTTG 59.995 43.478 0.00 0.00 38.00 3.61
1010 1062 1.754226 GTAGAGAGAAGAGGGGCACAG 59.246 57.143 0.00 0.00 0.00 3.66
1088 1140 1.073199 CTATGGTCGGCCCCATTCC 59.927 63.158 17.57 4.38 42.70 3.01
1197 1253 1.613437 AGTGGTGGTTTTGCACTATGC 59.387 47.619 0.00 0.00 45.29 3.14
1198 1254 3.305335 GGAAGTGGTGGTTTTGCACTATG 60.305 47.826 0.00 0.00 0.00 2.23
1246 1303 7.284489 CCTTCCGTATCCATTTCCATTAAAAGA 59.716 37.037 0.00 0.00 0.00 2.52
1247 1304 7.425606 CCTTCCGTATCCATTTCCATTAAAAG 58.574 38.462 0.00 0.00 0.00 2.27
1248 1305 6.183360 GCCTTCCGTATCCATTTCCATTAAAA 60.183 38.462 0.00 0.00 0.00 1.52
1249 1306 5.300792 GCCTTCCGTATCCATTTCCATTAAA 59.699 40.000 0.00 0.00 0.00 1.52
1250 1307 4.825085 GCCTTCCGTATCCATTTCCATTAA 59.175 41.667 0.00 0.00 0.00 1.40
1251 1308 4.104102 AGCCTTCCGTATCCATTTCCATTA 59.896 41.667 0.00 0.00 0.00 1.90
1279 1336 1.212751 GGATGCGCAAGAAACCCAC 59.787 57.895 17.11 0.00 43.02 4.61
1437 1494 7.440198 TCTTGTCATTCATCTATCTCACCATC 58.560 38.462 0.00 0.00 0.00 3.51
1577 1637 5.653255 AAATCCAGTGCCTAATGGTATCT 57.347 39.130 0.00 0.00 42.55 1.98
1646 1706 5.104374 CACCAAATCTTTCCATTTCCATCG 58.896 41.667 0.00 0.00 0.00 3.84
1841 1905 1.688197 CAAGGCTGCCAAGGAAAAGAA 59.312 47.619 22.65 0.00 0.00 2.52
1868 1932 3.050275 GCACTCACCGTTGGAGCC 61.050 66.667 0.00 0.00 35.79 4.70
1886 1950 5.824624 TGAAGTAAGATGATGATTGGAAGGC 59.175 40.000 0.00 0.00 0.00 4.35
1944 2014 9.603921 AAAAGAAATTAAGATGGCCAATATGTG 57.396 29.630 10.96 0.00 0.00 3.21
1955 2025 9.415544 CCTGGAAAGTGAAAAGAAATTAAGATG 57.584 33.333 0.00 0.00 0.00 2.90
1998 2068 2.740981 GTCCACTCTCAGATTTGTGCAG 59.259 50.000 0.00 0.00 0.00 4.41
2133 2203 3.134623 CCTTGCTATGGGCGATATGGATA 59.865 47.826 0.00 0.00 45.43 2.59
2307 2377 1.539388 TCGATGGTGATGTTTGCAACC 59.461 47.619 0.00 0.00 0.00 3.77
2609 2750 2.040278 TCCCCCTGATGTTCTTGAACAG 59.960 50.000 18.99 7.93 35.95 3.16
2623 2764 2.067932 TTGAGGCACTTGTCCCCCTG 62.068 60.000 0.00 0.00 41.55 4.45
2674 2815 1.800805 CTATCCCATAGCAAGGCACG 58.199 55.000 0.00 0.00 0.00 5.34
2684 2825 2.744823 CGTTGTGCAAGGCTATCCCATA 60.745 50.000 0.00 0.00 35.39 2.74
2716 2857 2.107141 CCGCCTCCTCGCTTTAGG 59.893 66.667 0.00 0.00 38.06 2.69
2749 2890 4.346730 TCCTCCATTTTGCATTCTCACAT 58.653 39.130 0.00 0.00 0.00 3.21
2847 3003 5.615289 ACCCTTTCTGCTCATCATATACAC 58.385 41.667 0.00 0.00 0.00 2.90
2902 3062 2.964209 TCCACTGGAAGACTTCACTCT 58.036 47.619 16.85 0.00 37.43 3.24
2918 3078 6.316390 CACCTATGTACTCAAAATCCTTCCAC 59.684 42.308 0.00 0.00 0.00 4.02
2936 3096 6.093219 GCATGTATCCTTCTATTGCACCTATG 59.907 42.308 0.00 0.00 0.00 2.23
2940 3100 3.503748 GGCATGTATCCTTCTATTGCACC 59.496 47.826 0.00 0.00 0.00 5.01
2970 3130 2.052157 GCGGCGATCACTAGTACATTC 58.948 52.381 12.98 0.00 0.00 2.67
3026 3186 6.037062 CACAGCGGATACTCATCAAAAATACA 59.963 38.462 0.00 0.00 32.32 2.29
3149 3314 4.888326 TGCTCAAAAGGGTTTATGCATT 57.112 36.364 3.54 0.00 32.63 3.56
3217 3382 9.508567 GCTACTTCTTTGGAAAAAGCATATAAG 57.491 33.333 0.00 0.00 38.29 1.73
3240 3406 6.069905 TGTTTTGGGTCCTCATAGTATTGCTA 60.070 38.462 0.00 0.00 0.00 3.49
3245 3411 6.388619 ACTTGTTTTGGGTCCTCATAGTAT 57.611 37.500 0.00 0.00 0.00 2.12
3255 3421 6.550843 CCAAATTTTGAACTTGTTTTGGGTC 58.449 36.000 10.72 0.00 39.44 4.46
3354 3523 5.448632 GCCCTTGTTTGTACTTTGGATATCG 60.449 44.000 0.00 0.00 0.00 2.92
3355 3524 5.163550 GGCCCTTGTTTGTACTTTGGATATC 60.164 44.000 0.00 0.00 0.00 1.63
3406 3576 2.561209 TCTGCCCAGAATGTACCCTA 57.439 50.000 0.00 0.00 33.91 3.53
3434 3604 7.201974 GCTCTTGTATACTAGGGTATGGTTTCA 60.202 40.741 14.50 0.00 38.86 2.69
3463 3664 2.157085 GGCAAAACTGACTACGTACTGC 59.843 50.000 0.00 0.00 0.00 4.40
3481 3682 0.389817 CTCGTCTCATCGGTTTGGCA 60.390 55.000 0.00 0.00 0.00 4.92
3540 3741 1.774856 AGGTAAGTTGGTGAGGTTGCT 59.225 47.619 0.00 0.00 0.00 3.91
3569 3770 7.448777 GTGGGTAGATACTCTGATGTTCATCTA 59.551 40.741 12.94 2.45 0.00 1.98
3703 3907 3.445857 GTCAAGAGGACGGTGTATTAGC 58.554 50.000 0.00 0.00 36.65 3.09
3727 3931 4.963276 TTGTTCATATCTTTTGGGCTCG 57.037 40.909 0.00 0.00 0.00 5.03
3734 3938 6.571150 GCTGGCTGAGTTTGTTCATATCTTTT 60.571 38.462 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.