Multiple sequence alignment - TraesCS7B01G067500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G067500 chr7B 100.000 2764 0 0 1 2764 72998278 72995515 0.000000e+00 5105
1 TraesCS7B01G067500 chr7B 98.427 445 7 0 2320 2764 72987553 72987109 0.000000e+00 784
2 TraesCS7B01G067500 chr7B 97.085 446 11 2 2320 2764 229131105 229130661 0.000000e+00 750
3 TraesCS7B01G067500 chr7B 96.637 446 13 2 2320 2764 229122461 229122017 0.000000e+00 739
4 TraesCS7B01G067500 chr7D 93.809 1373 63 12 547 1915 113427172 113425818 0.000000e+00 2045
5 TraesCS7B01G067500 chr7D 82.973 370 36 11 1913 2265 113425736 113425377 2.670000e-80 309
6 TraesCS7B01G067500 chr7A 89.946 1303 102 15 554 1841 118449373 118448085 0.000000e+00 1653
7 TraesCS7B01G067500 chr7A 84.249 546 66 11 43 572 118449938 118449397 5.280000e-142 514
8 TraesCS7B01G067500 chr7A 82.731 498 45 18 1839 2319 118448057 118447584 3.310000e-109 405
9 TraesCS7B01G067500 chr3B 97.309 446 11 1 2320 2764 640788605 640788160 0.000000e+00 756
10 TraesCS7B01G067500 chr3B 96.637 446 13 2 2320 2764 426534779 426534335 0.000000e+00 739
11 TraesCS7B01G067500 chr3B 96.637 446 13 2 2320 2764 640797095 640796651 0.000000e+00 739
12 TraesCS7B01G067500 chr5B 97.085 446 12 1 2320 2764 348609533 348609088 0.000000e+00 750
13 TraesCS7B01G067500 chr5B 97.072 444 13 0 2321 2764 421626910 421626467 0.000000e+00 749
14 TraesCS7B01G067500 chr2B 96.222 450 15 2 2316 2764 253225997 253226445 0.000000e+00 736
15 TraesCS7B01G067500 chr3A 78.740 254 50 4 1444 1695 549620191 549620442 1.700000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G067500 chr7B 72995515 72998278 2763 True 5105.000000 5105 100.000 1 2764 1 chr7B.!!$R2 2763
1 TraesCS7B01G067500 chr7D 113425377 113427172 1795 True 1177.000000 2045 88.391 547 2265 2 chr7D.!!$R1 1718
2 TraesCS7B01G067500 chr7A 118447584 118449938 2354 True 857.333333 1653 85.642 43 2319 3 chr7A.!!$R1 2276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.178995 TGTGACCATGCAAAGGCTCA 60.179 50.0 8.36 8.52 41.91 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2128 0.038166 TGGAACAACCAGCATCTCCC 59.962 55.0 0.0 0.0 44.64 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.553330 TTTTCAGATCCTAGGTGTGACC 57.447 45.455 9.08 0.00 38.99 4.02
24 25 2.919772 TCAGATCCTAGGTGTGACCA 57.080 50.000 9.08 0.00 41.95 4.02
25 26 3.404869 TCAGATCCTAGGTGTGACCAT 57.595 47.619 9.08 0.00 41.95 3.55
26 27 3.033909 TCAGATCCTAGGTGTGACCATG 58.966 50.000 9.08 0.00 41.95 3.66
27 28 1.765314 AGATCCTAGGTGTGACCATGC 59.235 52.381 9.08 0.00 41.95 4.06
28 29 1.486310 GATCCTAGGTGTGACCATGCA 59.514 52.381 9.08 0.00 41.95 3.96
29 30 1.357137 TCCTAGGTGTGACCATGCAA 58.643 50.000 9.08 0.00 41.95 4.08
30 31 1.702401 TCCTAGGTGTGACCATGCAAA 59.298 47.619 9.08 0.00 41.95 3.68
31 32 2.086869 CCTAGGTGTGACCATGCAAAG 58.913 52.381 0.00 0.00 41.95 2.77
32 33 2.086869 CTAGGTGTGACCATGCAAAGG 58.913 52.381 6.99 6.99 41.95 3.11
33 34 1.181098 AGGTGTGACCATGCAAAGGC 61.181 55.000 8.36 0.00 41.95 4.35
34 35 1.181098 GGTGTGACCATGCAAAGGCT 61.181 55.000 8.36 0.00 38.51 4.58
35 36 0.242017 GTGTGACCATGCAAAGGCTC 59.758 55.000 8.36 6.39 41.91 4.70
36 37 0.178995 TGTGACCATGCAAAGGCTCA 60.179 50.000 8.36 8.52 41.91 4.26
37 38 0.242017 GTGACCATGCAAAGGCTCAC 59.758 55.000 18.74 18.74 41.91 3.51
38 39 0.178995 TGACCATGCAAAGGCTCACA 60.179 50.000 8.36 2.41 41.91 3.58
39 40 0.961019 GACCATGCAAAGGCTCACAA 59.039 50.000 8.36 0.00 41.91 3.33
40 41 0.963962 ACCATGCAAAGGCTCACAAG 59.036 50.000 8.36 0.00 41.91 3.16
41 42 1.250328 CCATGCAAAGGCTCACAAGA 58.750 50.000 0.00 0.00 41.91 3.02
49 50 0.842030 AGGCTCACAAGATGGTGGGA 60.842 55.000 0.00 0.00 41.96 4.37
116 124 5.049405 CACCACAACTTTGATAGTCTTGGTC 60.049 44.000 5.82 0.00 44.38 4.02
120 128 3.589988 ACTTTGATAGTCTTGGTCAGCG 58.410 45.455 0.00 0.00 28.23 5.18
126 134 0.179045 AGTCTTGGTCAGCGTTGCTT 60.179 50.000 0.00 0.00 36.40 3.91
132 140 0.796927 GGTCAGCGTTGCTTAGTTCC 59.203 55.000 0.00 0.00 36.40 3.62
133 141 1.608283 GGTCAGCGTTGCTTAGTTCCT 60.608 52.381 0.00 0.00 36.40 3.36
134 142 2.143925 GTCAGCGTTGCTTAGTTCCTT 58.856 47.619 0.00 0.00 36.40 3.36
135 143 2.096218 GTCAGCGTTGCTTAGTTCCTTG 60.096 50.000 0.00 0.00 36.40 3.61
137 145 1.873591 AGCGTTGCTTAGTTCCTTGTG 59.126 47.619 0.00 0.00 33.89 3.33
138 146 1.871039 GCGTTGCTTAGTTCCTTGTGA 59.129 47.619 0.00 0.00 0.00 3.58
139 147 2.096218 GCGTTGCTTAGTTCCTTGTGAG 60.096 50.000 0.00 0.00 0.00 3.51
140 148 3.131396 CGTTGCTTAGTTCCTTGTGAGT 58.869 45.455 0.00 0.00 0.00 3.41
141 149 3.184581 CGTTGCTTAGTTCCTTGTGAGTC 59.815 47.826 0.00 0.00 0.00 3.36
142 150 4.127171 GTTGCTTAGTTCCTTGTGAGTCA 58.873 43.478 0.00 0.00 0.00 3.41
248 256 2.625314 TGAGAGTATGAGAATCCCAGCG 59.375 50.000 0.00 0.00 0.00 5.18
250 258 3.034635 AGAGTATGAGAATCCCAGCGTT 58.965 45.455 0.00 0.00 0.00 4.84
276 284 2.622942 GCAACCATCAAGAGTCAACCAA 59.377 45.455 0.00 0.00 0.00 3.67
282 290 4.023707 CCATCAAGAGTCAACCAAACTCAC 60.024 45.833 6.10 0.00 44.54 3.51
289 297 4.030216 AGTCAACCAAACTCACCCAAATT 58.970 39.130 0.00 0.00 0.00 1.82
290 298 4.119136 GTCAACCAAACTCACCCAAATTG 58.881 43.478 0.00 0.00 0.00 2.32
297 305 4.420522 AACTCACCCAAATTGTGCAAAT 57.579 36.364 0.00 0.00 33.71 2.32
304 312 5.177327 CACCCAAATTGTGCAAATTGTAGAC 59.823 40.000 10.60 0.00 31.16 2.59
316 325 5.615325 GCAAATTGTAGACAAGCCAAATTGC 60.615 40.000 8.17 8.17 43.50 3.56
318 327 3.921119 TGTAGACAAGCCAAATTGCTG 57.079 42.857 0.00 0.00 41.80 4.41
320 329 3.503363 TGTAGACAAGCCAAATTGCTGAG 59.497 43.478 0.00 0.00 41.80 3.35
325 334 3.194116 ACAAGCCAAATTGCTGAGTATGG 59.806 43.478 0.00 0.00 41.80 2.74
356 365 2.170166 TGGAGCCCAAATGTCAATGTC 58.830 47.619 0.00 0.00 0.00 3.06
357 366 2.170166 GGAGCCCAAATGTCAATGTCA 58.830 47.619 0.00 0.00 0.00 3.58
359 368 3.196254 GGAGCCCAAATGTCAATGTCATT 59.804 43.478 0.05 0.05 37.14 2.57
360 369 4.178540 GAGCCCAAATGTCAATGTCATTG 58.821 43.478 17.95 17.95 41.57 2.82
361 370 2.674357 GCCCAAATGTCAATGTCATTGC 59.326 45.455 19.02 14.52 40.05 3.56
366 377 5.574055 CCAAATGTCAATGTCATTGCAGTAC 59.426 40.000 19.02 12.86 40.05 2.73
368 379 5.556355 ATGTCAATGTCATTGCAGTACAG 57.444 39.130 19.02 0.00 40.05 2.74
370 381 5.062528 TGTCAATGTCATTGCAGTACAGAA 58.937 37.500 19.02 0.00 40.05 3.02
378 389 6.262944 TGTCATTGCAGTACAGAAGAAACAAT 59.737 34.615 0.00 0.00 0.00 2.71
379 390 7.141363 GTCATTGCAGTACAGAAGAAACAATT 58.859 34.615 0.00 0.00 0.00 2.32
383 394 7.421530 TGCAGTACAGAAGAAACAATTAGTC 57.578 36.000 0.00 0.00 0.00 2.59
401 412 3.513225 CCATCCGCATGGTGTTCC 58.487 61.111 0.00 0.00 44.46 3.62
402 413 2.120909 CCATCCGCATGGTGTTCCC 61.121 63.158 0.00 0.00 44.46 3.97
414 427 1.064952 GGTGTTCCCGTGTGTGAAAAG 59.935 52.381 0.00 0.00 0.00 2.27
423 436 2.940410 CGTGTGTGAAAAGTAACCCAGT 59.060 45.455 0.00 0.00 0.00 4.00
427 440 6.260377 GTGTGTGAAAAGTAACCCAGTAAAC 58.740 40.000 0.00 0.00 0.00 2.01
438 451 2.205074 CCCAGTAAACGCTAGATGCAG 58.795 52.381 0.00 0.00 43.06 4.41
444 457 0.807667 AACGCTAGATGCAGCTTCCG 60.808 55.000 11.02 15.78 43.06 4.30
464 478 3.384668 CGTATTGGACATGAGCTACTGG 58.615 50.000 0.00 0.00 0.00 4.00
499 514 6.265577 ACATGGTAGCTTTCATTTATTTCGC 58.734 36.000 0.00 0.00 0.00 4.70
508 523 9.202273 AGCTTTCATTTATTTCGCAACATAAAA 57.798 25.926 0.00 0.00 30.51 1.52
509 524 9.971744 GCTTTCATTTATTTCGCAACATAAAAT 57.028 25.926 0.00 0.00 30.51 1.82
519 534 6.279513 TCGCAACATAAAATCTGGGAAATT 57.720 33.333 0.00 0.00 0.00 1.82
520 535 7.397892 TCGCAACATAAAATCTGGGAAATTA 57.602 32.000 0.00 0.00 0.00 1.40
523 538 8.137437 CGCAACATAAAATCTGGGAAATTAGAT 58.863 33.333 0.00 0.00 35.25 1.98
559 618 4.917415 GGAACTTGTGAATGCATGTAACAC 59.083 41.667 0.00 9.51 0.00 3.32
609 668 2.822561 TCGTATTGCTTTGCCATTCCAA 59.177 40.909 0.00 0.00 0.00 3.53
671 731 9.412460 AGAAGATGTAAATGATAAATTGGAGCA 57.588 29.630 0.00 0.00 0.00 4.26
712 772 2.161855 TGTCAATGTGTTCCCTCATGC 58.838 47.619 0.00 0.00 0.00 4.06
713 773 2.224843 TGTCAATGTGTTCCCTCATGCT 60.225 45.455 0.00 0.00 0.00 3.79
714 774 2.163010 GTCAATGTGTTCCCTCATGCTG 59.837 50.000 0.00 0.00 0.00 4.41
715 775 2.165167 CAATGTGTTCCCTCATGCTGT 58.835 47.619 0.00 0.00 0.00 4.40
716 776 2.119801 ATGTGTTCCCTCATGCTGTC 57.880 50.000 0.00 0.00 0.00 3.51
717 777 0.764271 TGTGTTCCCTCATGCTGTCA 59.236 50.000 0.00 0.00 0.00 3.58
718 778 1.352017 TGTGTTCCCTCATGCTGTCAT 59.648 47.619 0.00 0.00 0.00 3.06
729 789 0.674534 TGCTGTCATGCAATGCAACA 59.325 45.000 13.45 12.36 46.21 3.33
768 828 8.589335 GTCAGACTGACAACATTTAGTTTCTA 57.411 34.615 27.15 0.00 46.22 2.10
797 859 4.537015 TGATAACAGATGCAGACGTATCG 58.463 43.478 0.00 0.00 39.09 2.92
819 881 6.647229 TCGTTCTCTGAGTGGTACTAGATAA 58.353 40.000 4.32 0.00 0.00 1.75
829 891 7.622081 TGAGTGGTACTAGATAAATTTCAGGGA 59.378 37.037 0.00 0.00 0.00 4.20
831 893 7.402071 AGTGGTACTAGATAAATTTCAGGGACA 59.598 37.037 0.00 0.00 0.00 4.02
841 903 9.143631 GATAAATTTCAGGGACACTTGAATTTG 57.856 33.333 14.02 0.00 0.00 2.32
976 1039 6.698380 TCCTCTGAATACCTGTAACTCAAAC 58.302 40.000 0.00 0.00 0.00 2.93
1070 1136 2.203788 TCGGGTCCTCCTTGCTGT 60.204 61.111 0.00 0.00 0.00 4.40
1080 1146 0.250901 TCCTTGCTGTTTCAGGGAGC 60.251 55.000 0.00 0.00 37.31 4.70
1110 1176 4.151512 GCTATAAAATTCGAGAGCCTCTGC 59.848 45.833 0.00 0.00 37.95 4.26
1114 1180 0.752009 ATTCGAGAGCCTCTGCCGTA 60.752 55.000 0.00 0.00 38.69 4.02
1131 1197 1.112113 GTATCTTCTCCGAGTGGGCA 58.888 55.000 0.00 0.00 35.24 5.36
1212 1278 2.334838 AGCGACGTCATTCTTTACACC 58.665 47.619 17.16 0.00 0.00 4.16
1239 1305 2.225267 TGATGAGTGGTCTACCTGGACA 60.225 50.000 0.00 0.00 37.91 4.02
1260 1326 5.507637 ACAAAGATAGGAGACGAGGTTCTA 58.492 41.667 0.00 0.00 0.00 2.10
1275 1341 2.099263 GGTTCTACACATAGAGCTGCGA 59.901 50.000 0.00 0.00 38.69 5.10
1333 1399 2.976494 AAACACCCTGGCCAAGGTCG 62.976 60.000 23.93 19.64 45.78 4.79
1374 1440 2.671396 ACCGTTAGATTCGATGTTGCAC 59.329 45.455 0.00 0.00 0.00 4.57
1451 1517 2.826428 TCATTAGCTTCACAGATCGCC 58.174 47.619 0.00 0.00 0.00 5.54
1452 1518 2.168313 TCATTAGCTTCACAGATCGCCA 59.832 45.455 0.00 0.00 0.00 5.69
1454 1520 0.179100 TAGCTTCACAGATCGCCAGC 60.179 55.000 0.00 0.00 0.00 4.85
1484 1550 0.108585 ACAACCTCCTGACGTGCATT 59.891 50.000 0.00 0.00 0.00 3.56
1487 1553 0.320771 ACCTCCTGACGTGCATTGTC 60.321 55.000 13.43 13.43 36.88 3.18
1782 1849 0.585357 GCTGATGCGATGATGGTCAC 59.415 55.000 0.00 0.00 0.00 3.67
1801 1875 5.938125 GGTCACTATGTTCAGGTGTTTATGT 59.062 40.000 0.00 0.00 33.30 2.29
1828 1934 1.452145 TTGAGTTTTCTGTGCCGCCC 61.452 55.000 0.00 0.00 0.00 6.13
1859 1965 4.565564 GGTGTTTATCGGTGATGTCTGTAC 59.434 45.833 0.00 0.00 0.00 2.90
1887 1999 5.470368 CCAACATGTAGTACCTATGGATCG 58.530 45.833 0.00 0.00 0.00 3.69
1932 2128 5.808366 TGTTATTAGGGCATAGAGACTGG 57.192 43.478 0.00 0.00 0.00 4.00
1936 2132 0.105246 AGGGCATAGAGACTGGGGAG 60.105 60.000 0.00 0.00 0.00 4.30
1940 2136 1.001860 GCATAGAGACTGGGGAGATGC 59.998 57.143 0.00 0.00 0.00 3.91
1941 2137 2.607499 CATAGAGACTGGGGAGATGCT 58.393 52.381 0.00 0.00 0.00 3.79
1942 2138 2.079170 TAGAGACTGGGGAGATGCTG 57.921 55.000 0.00 0.00 0.00 4.41
1943 2139 0.690411 AGAGACTGGGGAGATGCTGG 60.690 60.000 0.00 0.00 0.00 4.85
1966 2170 4.916983 TGTTCCAGCCATAATGTTATGC 57.083 40.909 7.14 4.00 39.30 3.14
1997 2210 3.616956 TGAATCTGCTTCCGTTCTGAT 57.383 42.857 0.00 0.00 32.49 2.90
2022 2235 5.528043 TTACTGTGATGGTTTGCAAATGT 57.472 34.783 16.21 4.39 0.00 2.71
2023 2236 3.719924 ACTGTGATGGTTTGCAAATGTG 58.280 40.909 16.21 3.26 0.00 3.21
2034 2247 1.202794 TGCAAATGTGACTCCAGCTGA 60.203 47.619 17.39 0.00 0.00 4.26
2036 2249 2.082231 CAAATGTGACTCCAGCTGAGG 58.918 52.381 17.39 9.83 46.01 3.86
2075 2288 4.065789 GGAATTCAGTTTCTCCGTCTTGT 58.934 43.478 7.93 0.00 0.00 3.16
2076 2289 4.083802 GGAATTCAGTTTCTCCGTCTTGTG 60.084 45.833 7.93 0.00 0.00 3.33
2078 2291 1.760613 TCAGTTTCTCCGTCTTGTGGT 59.239 47.619 0.00 0.00 0.00 4.16
2079 2292 1.867233 CAGTTTCTCCGTCTTGTGGTG 59.133 52.381 0.00 0.00 0.00 4.17
2081 2294 1.124780 TTTCTCCGTCTTGTGGTGGA 58.875 50.000 0.00 0.00 0.00 4.02
2082 2295 0.391597 TTCTCCGTCTTGTGGTGGAC 59.608 55.000 0.00 0.00 0.00 4.02
2083 2296 0.757561 TCTCCGTCTTGTGGTGGACA 60.758 55.000 0.00 0.00 33.19 4.02
2119 2332 0.463204 CTGCACTGTCAGGATCGGAT 59.537 55.000 4.53 0.00 0.00 4.18
2120 2333 0.176449 TGCACTGTCAGGATCGGATG 59.824 55.000 4.53 0.00 0.00 3.51
2124 2340 0.531532 CTGTCAGGATCGGATGGTGC 60.532 60.000 0.00 0.00 0.00 5.01
2249 2465 2.338500 GATTCAGTTCAGTCACCGTCC 58.662 52.381 0.00 0.00 0.00 4.79
2252 2468 0.946221 CAGTTCAGTCACCGTCCTGC 60.946 60.000 0.00 0.00 0.00 4.85
2269 2485 2.111384 CTGCCCTTCTTGCTACTCCTA 58.889 52.381 0.00 0.00 0.00 2.94
2270 2486 2.102252 CTGCCCTTCTTGCTACTCCTAG 59.898 54.545 0.00 0.00 0.00 3.02
2271 2487 2.112190 GCCCTTCTTGCTACTCCTAGT 58.888 52.381 0.00 0.00 0.00 2.57
2273 2489 3.680196 GCCCTTCTTGCTACTCCTAGTTG 60.680 52.174 0.00 0.00 0.00 3.16
2274 2490 3.526534 CCTTCTTGCTACTCCTAGTTGC 58.473 50.000 6.55 6.55 45.06 4.17
2279 2495 2.385803 TGCTACTCCTAGTTGCCTACC 58.614 52.381 10.24 0.00 44.40 3.18
2280 2496 2.291996 TGCTACTCCTAGTTGCCTACCA 60.292 50.000 10.24 0.00 44.40 3.25
2281 2497 2.362717 GCTACTCCTAGTTGCCTACCAG 59.637 54.545 2.62 0.00 40.28 4.00
2282 2498 1.196012 ACTCCTAGTTGCCTACCAGC 58.804 55.000 0.00 0.00 0.00 4.85
2283 2499 1.195115 CTCCTAGTTGCCTACCAGCA 58.805 55.000 0.00 0.00 42.17 4.41
2284 2500 0.902531 TCCTAGTTGCCTACCAGCAC 59.097 55.000 0.00 0.00 43.97 4.40
2285 2501 0.905357 CCTAGTTGCCTACCAGCACT 59.095 55.000 0.00 0.00 43.97 4.40
2286 2502 2.108168 CCTAGTTGCCTACCAGCACTA 58.892 52.381 0.00 0.00 43.97 2.74
2296 2512 3.451178 CCTACCAGCACTACACCAGTAAT 59.549 47.826 0.00 0.00 34.98 1.89
2300 2516 3.181465 CCAGCACTACACCAGTAATAGGG 60.181 52.174 0.00 0.00 34.98 3.53
2319 2535 1.869132 GGACGTTTTGGTTTCGTAGCT 59.131 47.619 0.00 0.00 37.92 3.32
2320 2536 2.349155 GGACGTTTTGGTTTCGTAGCTG 60.349 50.000 0.00 0.00 37.92 4.24
2321 2537 2.282407 ACGTTTTGGTTTCGTAGCTGT 58.718 42.857 0.00 0.00 36.05 4.40
2322 2538 3.456280 ACGTTTTGGTTTCGTAGCTGTA 58.544 40.909 0.00 0.00 36.05 2.74
2323 2539 3.870419 ACGTTTTGGTTTCGTAGCTGTAA 59.130 39.130 0.00 0.00 36.05 2.41
2324 2540 4.206088 CGTTTTGGTTTCGTAGCTGTAAC 58.794 43.478 0.00 0.00 0.00 2.50
2325 2541 4.260294 CGTTTTGGTTTCGTAGCTGTAACA 60.260 41.667 0.00 0.00 0.00 2.41
2326 2542 5.559417 CGTTTTGGTTTCGTAGCTGTAACAT 60.559 40.000 0.00 0.00 0.00 2.71
2327 2543 5.600908 TTTGGTTTCGTAGCTGTAACATC 57.399 39.130 0.00 0.00 0.00 3.06
2328 2544 3.592059 TGGTTTCGTAGCTGTAACATCC 58.408 45.455 0.00 0.00 0.00 3.51
2329 2545 2.934553 GGTTTCGTAGCTGTAACATCCC 59.065 50.000 0.00 0.00 0.00 3.85
2330 2546 3.592059 GTTTCGTAGCTGTAACATCCCA 58.408 45.455 0.00 0.00 0.00 4.37
2331 2547 3.965379 TTCGTAGCTGTAACATCCCAA 57.035 42.857 0.00 0.00 0.00 4.12
2332 2548 3.965379 TCGTAGCTGTAACATCCCAAA 57.035 42.857 0.00 0.00 0.00 3.28
2333 2549 4.481368 TCGTAGCTGTAACATCCCAAAT 57.519 40.909 0.00 0.00 0.00 2.32
2334 2550 4.839121 TCGTAGCTGTAACATCCCAAATT 58.161 39.130 0.00 0.00 0.00 1.82
2335 2551 5.250200 TCGTAGCTGTAACATCCCAAATTT 58.750 37.500 0.00 0.00 0.00 1.82
2336 2552 5.708230 TCGTAGCTGTAACATCCCAAATTTT 59.292 36.000 0.00 0.00 0.00 1.82
2337 2553 6.027749 CGTAGCTGTAACATCCCAAATTTTC 58.972 40.000 0.00 0.00 0.00 2.29
2338 2554 6.348950 CGTAGCTGTAACATCCCAAATTTTCA 60.349 38.462 0.00 0.00 0.00 2.69
2339 2555 6.418057 AGCTGTAACATCCCAAATTTTCAA 57.582 33.333 0.00 0.00 0.00 2.69
2340 2556 7.008021 AGCTGTAACATCCCAAATTTTCAAT 57.992 32.000 0.00 0.00 0.00 2.57
2341 2557 7.452562 AGCTGTAACATCCCAAATTTTCAATT 58.547 30.769 0.00 0.00 0.00 2.32
2342 2558 7.938490 AGCTGTAACATCCCAAATTTTCAATTT 59.062 29.630 0.00 0.00 0.00 1.82
2343 2559 8.016801 GCTGTAACATCCCAAATTTTCAATTTG 58.983 33.333 12.97 12.97 38.39 2.32
2344 2560 9.270640 CTGTAACATCCCAAATTTTCAATTTGA 57.729 29.630 19.15 0.00 40.42 2.69
2345 2561 9.050601 TGTAACATCCCAAATTTTCAATTTGAC 57.949 29.630 19.15 10.39 40.42 3.18
2346 2562 9.050601 GTAACATCCCAAATTTTCAATTTGACA 57.949 29.630 19.15 8.60 40.42 3.58
2347 2563 8.694581 AACATCCCAAATTTTCAATTTGACAT 57.305 26.923 19.15 10.07 40.42 3.06
2348 2564 8.101654 ACATCCCAAATTTTCAATTTGACATG 57.898 30.769 19.15 19.25 40.42 3.21
2349 2565 7.720515 ACATCCCAAATTTTCAATTTGACATGT 59.279 29.630 19.15 19.69 40.42 3.21
2350 2566 8.569641 CATCCCAAATTTTCAATTTGACATGTT 58.430 29.630 19.15 0.00 40.42 2.71
2351 2567 9.790344 ATCCCAAATTTTCAATTTGACATGTTA 57.210 25.926 19.15 0.00 40.42 2.41
2352 2568 9.790344 TCCCAAATTTTCAATTTGACATGTTAT 57.210 25.926 19.15 0.00 40.42 1.89
2362 2578 9.898152 TCAATTTGACATGTTATACATAGGTCA 57.102 29.630 0.00 8.18 38.75 4.02
2368 2584 9.927668 TGACATGTTATACATAGGTCATACATG 57.072 33.333 18.90 18.90 36.92 3.21
2369 2585 8.777865 ACATGTTATACATAGGTCATACATGC 57.222 34.615 19.76 0.00 39.72 4.06
2370 2586 8.374743 ACATGTTATACATAGGTCATACATGCA 58.625 33.333 19.76 0.00 39.72 3.96
2371 2587 9.387257 CATGTTATACATAGGTCATACATGCAT 57.613 33.333 12.64 0.00 36.53 3.96
2405 2621 5.927954 TTGCTTTTTCATTTGCAATCCTC 57.072 34.783 0.00 0.00 39.98 3.71
2406 2622 3.989167 TGCTTTTTCATTTGCAATCCTCG 59.011 39.130 0.00 0.00 32.12 4.63
2407 2623 4.236935 GCTTTTTCATTTGCAATCCTCGA 58.763 39.130 0.00 0.00 0.00 4.04
2408 2624 4.685628 GCTTTTTCATTTGCAATCCTCGAA 59.314 37.500 0.00 0.00 0.00 3.71
2409 2625 5.177327 GCTTTTTCATTTGCAATCCTCGAAA 59.823 36.000 0.00 2.81 0.00 3.46
2410 2626 6.128472 GCTTTTTCATTTGCAATCCTCGAAAT 60.128 34.615 0.00 0.00 0.00 2.17
2411 2627 6.949578 TTTTCATTTGCAATCCTCGAAATC 57.050 33.333 0.00 0.00 0.00 2.17
2412 2628 4.637483 TCATTTGCAATCCTCGAAATCC 57.363 40.909 0.00 0.00 0.00 3.01
2413 2629 4.272489 TCATTTGCAATCCTCGAAATCCT 58.728 39.130 0.00 0.00 0.00 3.24
2414 2630 5.436175 TCATTTGCAATCCTCGAAATCCTA 58.564 37.500 0.00 0.00 0.00 2.94
2415 2631 5.885352 TCATTTGCAATCCTCGAAATCCTAA 59.115 36.000 0.00 0.00 0.00 2.69
2416 2632 6.376864 TCATTTGCAATCCTCGAAATCCTAAA 59.623 34.615 0.00 0.00 0.00 1.85
2417 2633 5.560966 TTGCAATCCTCGAAATCCTAAAC 57.439 39.130 0.00 0.00 0.00 2.01
2418 2634 4.584874 TGCAATCCTCGAAATCCTAAACA 58.415 39.130 0.00 0.00 0.00 2.83
2419 2635 5.007034 TGCAATCCTCGAAATCCTAAACAA 58.993 37.500 0.00 0.00 0.00 2.83
2420 2636 5.106317 TGCAATCCTCGAAATCCTAAACAAC 60.106 40.000 0.00 0.00 0.00 3.32
2421 2637 5.123979 GCAATCCTCGAAATCCTAAACAACT 59.876 40.000 0.00 0.00 0.00 3.16
2422 2638 6.675728 GCAATCCTCGAAATCCTAAACAACTC 60.676 42.308 0.00 0.00 0.00 3.01
2423 2639 5.477607 TCCTCGAAATCCTAAACAACTCA 57.522 39.130 0.00 0.00 0.00 3.41
2424 2640 5.860611 TCCTCGAAATCCTAAACAACTCAA 58.139 37.500 0.00 0.00 0.00 3.02
2425 2641 5.932303 TCCTCGAAATCCTAAACAACTCAAG 59.068 40.000 0.00 0.00 0.00 3.02
2426 2642 5.122396 CCTCGAAATCCTAAACAACTCAAGG 59.878 44.000 0.00 0.00 0.00 3.61
2427 2643 5.860611 TCGAAATCCTAAACAACTCAAGGA 58.139 37.500 0.00 0.00 42.17 3.36
2428 2644 5.699458 TCGAAATCCTAAACAACTCAAGGAC 59.301 40.000 0.00 0.00 40.83 3.85
2429 2645 5.106673 CGAAATCCTAAACAACTCAAGGACC 60.107 44.000 0.00 0.00 40.83 4.46
2430 2646 5.584551 AATCCTAAACAACTCAAGGACCT 57.415 39.130 0.00 0.00 40.83 3.85
2431 2647 4.618920 TCCTAAACAACTCAAGGACCTC 57.381 45.455 0.00 0.00 33.18 3.85
2432 2648 3.326880 TCCTAAACAACTCAAGGACCTCC 59.673 47.826 0.00 0.00 33.18 4.30
2433 2649 2.256117 AAACAACTCAAGGACCTCCG 57.744 50.000 0.00 0.00 42.08 4.63
2434 2650 0.396811 AACAACTCAAGGACCTCCGG 59.603 55.000 0.00 0.00 42.08 5.14
2435 2651 0.471211 ACAACTCAAGGACCTCCGGA 60.471 55.000 2.93 2.93 42.08 5.14
2436 2652 0.247736 CAACTCAAGGACCTCCGGAG 59.752 60.000 25.36 25.36 43.39 4.63
2437 2653 0.114560 AACTCAAGGACCTCCGGAGA 59.885 55.000 33.39 10.19 41.65 3.71
2438 2654 0.323908 ACTCAAGGACCTCCGGAGAG 60.324 60.000 33.39 23.50 41.65 3.20
2439 2655 0.033991 CTCAAGGACCTCCGGAGAGA 60.034 60.000 33.39 17.32 43.39 3.10
2440 2656 0.033991 TCAAGGACCTCCGGAGAGAG 60.034 60.000 33.39 18.44 43.39 3.20
2441 2657 0.323908 CAAGGACCTCCGGAGAGAGT 60.324 60.000 33.39 21.73 43.39 3.24
2442 2658 0.410270 AAGGACCTCCGGAGAGAGTT 59.590 55.000 33.39 16.92 43.39 3.01
2443 2659 0.323908 AGGACCTCCGGAGAGAGTTG 60.324 60.000 33.39 16.91 43.39 3.16
2444 2660 1.324005 GGACCTCCGGAGAGAGTTGG 61.324 65.000 33.39 17.48 43.39 3.77
2445 2661 1.305381 ACCTCCGGAGAGAGTTGGG 60.305 63.158 33.39 16.68 43.39 4.12
2446 2662 2.060980 CCTCCGGAGAGAGTTGGGG 61.061 68.421 33.39 9.80 43.39 4.96
2447 2663 1.000486 CTCCGGAGAGAGTTGGGGA 60.000 63.158 28.21 0.00 43.39 4.81
2448 2664 0.397816 CTCCGGAGAGAGTTGGGGAT 60.398 60.000 28.21 0.00 43.39 3.85
2449 2665 0.042731 TCCGGAGAGAGTTGGGGATT 59.957 55.000 0.00 0.00 0.00 3.01
2450 2666 0.912486 CCGGAGAGAGTTGGGGATTT 59.088 55.000 0.00 0.00 0.00 2.17
2451 2667 1.282157 CCGGAGAGAGTTGGGGATTTT 59.718 52.381 0.00 0.00 0.00 1.82
2452 2668 2.633488 CGGAGAGAGTTGGGGATTTTC 58.367 52.381 0.00 0.00 0.00 2.29
2453 2669 2.237392 CGGAGAGAGTTGGGGATTTTCT 59.763 50.000 0.00 0.00 0.00 2.52
2454 2670 3.451178 CGGAGAGAGTTGGGGATTTTCTA 59.549 47.826 0.00 0.00 0.00 2.10
2455 2671 4.081087 CGGAGAGAGTTGGGGATTTTCTAA 60.081 45.833 0.00 0.00 0.00 2.10
2456 2672 5.396884 CGGAGAGAGTTGGGGATTTTCTAAT 60.397 44.000 0.00 0.00 0.00 1.73
2457 2673 6.427441 GGAGAGAGTTGGGGATTTTCTAATT 58.573 40.000 0.00 0.00 0.00 1.40
2458 2674 6.892456 GGAGAGAGTTGGGGATTTTCTAATTT 59.108 38.462 0.00 0.00 0.00 1.82
2459 2675 7.397476 GGAGAGAGTTGGGGATTTTCTAATTTT 59.603 37.037 0.00 0.00 0.00 1.82
2460 2676 8.354711 AGAGAGTTGGGGATTTTCTAATTTTC 57.645 34.615 0.00 0.00 0.00 2.29
2461 2677 7.950124 AGAGAGTTGGGGATTTTCTAATTTTCA 59.050 33.333 0.00 0.00 0.00 2.69
2462 2678 8.670521 AGAGTTGGGGATTTTCTAATTTTCAT 57.329 30.769 0.00 0.00 0.00 2.57
2463 2679 9.768215 AGAGTTGGGGATTTTCTAATTTTCATA 57.232 29.630 0.00 0.00 0.00 2.15
2492 2708 9.869757 TGAGATTTTATCAAATAGTGAAGACGA 57.130 29.630 0.00 0.00 40.50 4.20
2494 2710 9.319143 AGATTTTATCAAATAGTGAAGACGAGG 57.681 33.333 0.00 0.00 40.50 4.63
2495 2711 9.314321 GATTTTATCAAATAGTGAAGACGAGGA 57.686 33.333 0.00 0.00 40.50 3.71
2496 2712 9.838339 ATTTTATCAAATAGTGAAGACGAGGAT 57.162 29.630 0.00 0.00 40.50 3.24
2497 2713 9.667107 TTTTATCAAATAGTGAAGACGAGGATT 57.333 29.630 0.00 0.00 40.50 3.01
2498 2714 9.667107 TTTATCAAATAGTGAAGACGAGGATTT 57.333 29.630 0.00 0.00 40.50 2.17
2499 2715 6.968131 TCAAATAGTGAAGACGAGGATTTG 57.032 37.500 0.00 0.00 35.25 2.32
2500 2716 6.697395 TCAAATAGTGAAGACGAGGATTTGA 58.303 36.000 0.00 0.00 38.70 2.69
2501 2717 7.331026 TCAAATAGTGAAGACGAGGATTTGAT 58.669 34.615 0.00 0.00 37.07 2.57
2502 2718 7.824289 TCAAATAGTGAAGACGAGGATTTGATT 59.176 33.333 0.00 0.00 37.07 2.57
2503 2719 8.454106 CAAATAGTGAAGACGAGGATTTGATTT 58.546 33.333 0.00 0.00 35.71 2.17
2504 2720 8.567285 AATAGTGAAGACGAGGATTTGATTTT 57.433 30.769 0.00 0.00 0.00 1.82
2505 2721 9.667107 AATAGTGAAGACGAGGATTTGATTTTA 57.333 29.630 0.00 0.00 0.00 1.52
2506 2722 7.979444 AGTGAAGACGAGGATTTGATTTTAA 57.021 32.000 0.00 0.00 0.00 1.52
2507 2723 8.567285 AGTGAAGACGAGGATTTGATTTTAAT 57.433 30.769 0.00 0.00 0.00 1.40
2508 2724 9.014297 AGTGAAGACGAGGATTTGATTTTAATT 57.986 29.630 0.00 0.00 0.00 1.40
2523 2739 9.469097 TTGATTTTAATTATTTTCTCTCCGGGA 57.531 29.630 0.00 0.00 0.00 5.14
2524 2740 9.469097 TGATTTTAATTATTTTCTCTCCGGGAA 57.531 29.630 0.00 0.00 0.00 3.97
2532 2748 9.640952 ATTATTTTCTCTCCGGGAAATATTTCA 57.359 29.630 25.55 7.90 38.92 2.69
2533 2749 9.640952 TTATTTTCTCTCCGGGAAATATTTCAT 57.359 29.630 25.55 11.05 38.92 2.57
2534 2750 7.954666 TTTTCTCTCCGGGAAATATTTCATT 57.045 32.000 25.55 0.00 38.92 2.57
2535 2751 7.954666 TTTCTCTCCGGGAAATATTTCATTT 57.045 32.000 25.55 0.00 38.92 2.32
2536 2752 7.954666 TTCTCTCCGGGAAATATTTCATTTT 57.045 32.000 25.55 0.00 38.92 1.82
2537 2753 9.469097 TTTCTCTCCGGGAAATATTTCATTTTA 57.531 29.630 25.55 9.13 38.92 1.52
2538 2754 9.469097 TTCTCTCCGGGAAATATTTCATTTTAA 57.531 29.630 25.55 9.14 38.92 1.52
2539 2755 9.469097 TCTCTCCGGGAAATATTTCATTTTAAA 57.531 29.630 25.55 7.91 38.92 1.52
2570 2786 8.517323 AAATGAGGGGAGATAATATGACTTCT 57.483 34.615 0.00 0.00 0.00 2.85
2571 2787 7.732222 ATGAGGGGAGATAATATGACTTCTC 57.268 40.000 0.00 0.00 35.05 2.87
2590 2806 9.503427 GACTTCTCCAAAATAATTGAAATACCG 57.497 33.333 0.00 0.00 0.00 4.02
2591 2807 8.466798 ACTTCTCCAAAATAATTGAAATACCGG 58.533 33.333 0.00 0.00 0.00 5.28
2592 2808 8.582657 TTCTCCAAAATAATTGAAATACCGGA 57.417 30.769 9.46 0.00 0.00 5.14
2593 2809 8.220755 TCTCCAAAATAATTGAAATACCGGAG 57.779 34.615 9.46 0.00 37.16 4.63
2640 2856 9.646427 TTGGATTTTTATTTGAGTTTATTCGGG 57.354 29.630 0.00 0.00 0.00 5.14
2641 2857 9.026121 TGGATTTTTATTTGAGTTTATTCGGGA 57.974 29.630 0.00 0.00 0.00 5.14
2651 2867 8.696410 TTGAGTTTATTCGGGATTTTATTTGC 57.304 30.769 0.00 0.00 0.00 3.68
2652 2868 8.062065 TGAGTTTATTCGGGATTTTATTTGCT 57.938 30.769 0.00 0.00 0.00 3.91
2653 2869 8.188139 TGAGTTTATTCGGGATTTTATTTGCTC 58.812 33.333 0.00 0.00 0.00 4.26
2654 2870 7.489160 AGTTTATTCGGGATTTTATTTGCTCC 58.511 34.615 0.00 0.00 0.00 4.70
2655 2871 7.342026 AGTTTATTCGGGATTTTATTTGCTCCT 59.658 33.333 0.00 0.00 0.00 3.69
2656 2872 8.626526 GTTTATTCGGGATTTTATTTGCTCCTA 58.373 33.333 0.00 0.00 0.00 2.94
2657 2873 6.884280 ATTCGGGATTTTATTTGCTCCTAG 57.116 37.500 0.00 0.00 0.00 3.02
2658 2874 5.623956 TCGGGATTTTATTTGCTCCTAGA 57.376 39.130 0.00 0.00 0.00 2.43
2659 2875 5.996644 TCGGGATTTTATTTGCTCCTAGAA 58.003 37.500 0.00 0.00 0.00 2.10
2660 2876 6.419791 TCGGGATTTTATTTGCTCCTAGAAA 58.580 36.000 0.00 0.00 0.00 2.52
2661 2877 6.887545 TCGGGATTTTATTTGCTCCTAGAAAA 59.112 34.615 0.00 0.00 0.00 2.29
2662 2878 7.394923 TCGGGATTTTATTTGCTCCTAGAAAAA 59.605 33.333 0.00 0.00 0.00 1.94
2663 2879 8.197439 CGGGATTTTATTTGCTCCTAGAAAAAT 58.803 33.333 0.00 0.00 0.00 1.82
2664 2880 9.317936 GGGATTTTATTTGCTCCTAGAAAAATG 57.682 33.333 0.00 0.00 0.00 2.32
2665 2881 9.875691 GGATTTTATTTGCTCCTAGAAAAATGT 57.124 29.630 0.00 0.00 0.00 2.71
2668 2884 8.532977 TTTATTTGCTCCTAGAAAAATGTTGC 57.467 30.769 0.00 0.00 0.00 4.17
2669 2885 5.528043 TTTGCTCCTAGAAAAATGTTGCA 57.472 34.783 0.00 0.00 0.00 4.08
2670 2886 5.726980 TTGCTCCTAGAAAAATGTTGCAT 57.273 34.783 0.00 0.00 0.00 3.96
2671 2887 5.063180 TGCTCCTAGAAAAATGTTGCATG 57.937 39.130 0.00 0.00 0.00 4.06
2672 2888 4.766373 TGCTCCTAGAAAAATGTTGCATGA 59.234 37.500 0.00 0.00 0.00 3.07
2673 2889 5.419788 TGCTCCTAGAAAAATGTTGCATGAT 59.580 36.000 0.00 0.00 0.00 2.45
2674 2890 6.071221 TGCTCCTAGAAAAATGTTGCATGATT 60.071 34.615 0.00 0.00 0.00 2.57
2675 2891 6.815142 GCTCCTAGAAAAATGTTGCATGATTT 59.185 34.615 0.00 0.00 0.00 2.17
2676 2892 7.975616 GCTCCTAGAAAAATGTTGCATGATTTA 59.024 33.333 0.00 0.00 0.00 1.40
2677 2893 9.859427 CTCCTAGAAAAATGTTGCATGATTTAA 57.141 29.630 0.00 0.00 0.00 1.52
2684 2900 9.745880 AAAAATGTTGCATGATTTAAAATTGCA 57.254 22.222 15.12 15.12 41.22 4.08
2685 2901 9.915629 AAAATGTTGCATGATTTAAAATTGCAT 57.084 22.222 18.08 7.00 42.34 3.96
2686 2902 9.915629 AAATGTTGCATGATTTAAAATTGCATT 57.084 22.222 18.08 10.63 42.34 3.56
2687 2903 9.915629 AATGTTGCATGATTTAAAATTGCATTT 57.084 22.222 18.08 12.10 42.34 2.32
2688 2904 9.915629 ATGTTGCATGATTTAAAATTGCATTTT 57.084 22.222 18.08 0.75 42.34 1.82
2692 2908 8.675504 TGCATGATTTAAAATTGCATTTTAGGG 58.324 29.630 15.12 1.80 43.31 3.53
2693 2909 8.130469 GCATGATTTAAAATTGCATTTTAGGGG 58.870 33.333 6.98 2.30 43.31 4.79
2694 2910 7.622893 TGATTTAAAATTGCATTTTAGGGGC 57.377 32.000 6.98 0.00 43.31 5.80
2695 2911 6.601217 TGATTTAAAATTGCATTTTAGGGGCC 59.399 34.615 6.98 0.00 43.31 5.80
2696 2912 5.505181 TTAAAATTGCATTTTAGGGGCCA 57.495 34.783 4.39 0.00 43.31 5.36
2697 2913 4.379302 AAAATTGCATTTTAGGGGCCAA 57.621 36.364 4.39 0.00 40.44 4.52
2698 2914 4.379302 AAATTGCATTTTAGGGGCCAAA 57.621 36.364 4.39 0.00 0.00 3.28
2699 2915 4.379302 AATTGCATTTTAGGGGCCAAAA 57.621 36.364 4.39 4.90 0.00 2.44
2700 2916 3.864789 TTGCATTTTAGGGGCCAAAAA 57.135 38.095 15.67 15.67 0.00 1.94
2750 2966 9.724839 TTATTTAGACCGAGAAAACTTGTTTTG 57.275 29.630 15.07 4.77 0.00 2.44
2751 2967 4.632538 AGACCGAGAAAACTTGTTTTGG 57.367 40.909 15.07 12.40 0.00 3.28
2752 2968 4.266714 AGACCGAGAAAACTTGTTTTGGA 58.733 39.130 15.07 0.00 0.00 3.53
2753 2969 4.703093 AGACCGAGAAAACTTGTTTTGGAA 59.297 37.500 15.07 0.00 0.00 3.53
2754 2970 5.359860 AGACCGAGAAAACTTGTTTTGGAAT 59.640 36.000 15.07 3.98 0.00 3.01
2755 2971 5.972935 ACCGAGAAAACTTGTTTTGGAATT 58.027 33.333 15.07 0.00 0.00 2.17
2756 2972 6.403049 ACCGAGAAAACTTGTTTTGGAATTT 58.597 32.000 15.07 0.00 0.00 1.82
2757 2973 6.876789 ACCGAGAAAACTTGTTTTGGAATTTT 59.123 30.769 15.07 0.00 0.00 1.82
2758 2974 7.389330 ACCGAGAAAACTTGTTTTGGAATTTTT 59.611 29.630 15.07 0.00 0.00 1.94
2759 2975 8.874816 CCGAGAAAACTTGTTTTGGAATTTTTA 58.125 29.630 15.07 0.00 0.00 1.52
2760 2976 9.900264 CGAGAAAACTTGTTTTGGAATTTTTAG 57.100 29.630 15.07 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.349636 TGGTCACACCTAGGATCTGAAAAA 59.650 41.667 17.98 0.00 39.58 1.94
2 3 3.907474 TGGTCACACCTAGGATCTGAAAA 59.093 43.478 17.98 1.97 39.58 2.29
3 4 3.516586 TGGTCACACCTAGGATCTGAAA 58.483 45.455 17.98 2.30 39.58 2.69
4 5 3.184382 TGGTCACACCTAGGATCTGAA 57.816 47.619 17.98 0.00 39.58 3.02
5 6 2.919772 TGGTCACACCTAGGATCTGA 57.080 50.000 17.98 9.61 39.58 3.27
6 7 2.484417 GCATGGTCACACCTAGGATCTG 60.484 54.545 17.98 5.99 39.58 2.90
7 8 1.765314 GCATGGTCACACCTAGGATCT 59.235 52.381 17.98 0.00 39.58 2.75
8 9 1.486310 TGCATGGTCACACCTAGGATC 59.514 52.381 17.98 0.00 39.58 3.36
9 10 1.583556 TGCATGGTCACACCTAGGAT 58.416 50.000 17.98 0.00 39.58 3.24
10 11 1.357137 TTGCATGGTCACACCTAGGA 58.643 50.000 17.98 0.00 39.58 2.94
11 12 2.086869 CTTTGCATGGTCACACCTAGG 58.913 52.381 7.41 7.41 39.58 3.02
12 13 2.086869 CCTTTGCATGGTCACACCTAG 58.913 52.381 0.00 0.00 39.58 3.02
13 14 1.886222 GCCTTTGCATGGTCACACCTA 60.886 52.381 7.89 0.00 36.92 3.08
14 15 1.181098 GCCTTTGCATGGTCACACCT 61.181 55.000 7.89 0.00 36.92 4.00
15 16 1.181098 AGCCTTTGCATGGTCACACC 61.181 55.000 7.89 0.00 41.13 4.16
16 17 0.242017 GAGCCTTTGCATGGTCACAC 59.758 55.000 7.89 0.00 41.13 3.82
17 18 0.178995 TGAGCCTTTGCATGGTCACA 60.179 50.000 8.63 4.02 41.13 3.58
18 19 0.242017 GTGAGCCTTTGCATGGTCAC 59.758 55.000 20.56 20.56 41.13 3.67
19 20 0.178995 TGTGAGCCTTTGCATGGTCA 60.179 50.000 8.63 8.63 41.13 4.02
20 21 0.961019 TTGTGAGCCTTTGCATGGTC 59.039 50.000 7.89 6.02 41.13 4.02
21 22 0.963962 CTTGTGAGCCTTTGCATGGT 59.036 50.000 7.89 0.00 41.13 3.55
22 23 1.250328 TCTTGTGAGCCTTTGCATGG 58.750 50.000 0.00 2.22 41.13 3.66
23 24 2.416836 CCATCTTGTGAGCCTTTGCATG 60.417 50.000 0.00 0.00 41.13 4.06
24 25 1.822990 CCATCTTGTGAGCCTTTGCAT 59.177 47.619 0.00 0.00 41.13 3.96
25 26 1.250328 CCATCTTGTGAGCCTTTGCA 58.750 50.000 0.00 0.00 41.13 4.08
26 27 1.068055 CACCATCTTGTGAGCCTTTGC 60.068 52.381 0.00 0.00 38.55 3.68
27 28 1.542915 CCACCATCTTGTGAGCCTTTG 59.457 52.381 0.00 0.00 38.55 2.77
28 29 1.548582 CCCACCATCTTGTGAGCCTTT 60.549 52.381 0.00 0.00 38.55 3.11
29 30 0.038744 CCCACCATCTTGTGAGCCTT 59.961 55.000 0.00 0.00 38.55 4.35
30 31 0.842030 TCCCACCATCTTGTGAGCCT 60.842 55.000 0.00 0.00 38.55 4.58
31 32 0.257039 ATCCCACCATCTTGTGAGCC 59.743 55.000 0.00 0.00 38.55 4.70
32 33 1.065199 TCATCCCACCATCTTGTGAGC 60.065 52.381 0.00 0.00 38.55 4.26
33 34 2.238144 AGTCATCCCACCATCTTGTGAG 59.762 50.000 0.00 0.00 38.55 3.51
34 35 2.269023 AGTCATCCCACCATCTTGTGA 58.731 47.619 0.00 0.00 38.55 3.58
35 36 2.795231 AGTCATCCCACCATCTTGTG 57.205 50.000 0.00 0.00 35.98 3.33
36 37 2.915604 AGAAGTCATCCCACCATCTTGT 59.084 45.455 0.00 0.00 0.00 3.16
37 38 3.276857 CAGAAGTCATCCCACCATCTTG 58.723 50.000 0.00 0.00 0.00 3.02
38 39 2.915604 ACAGAAGTCATCCCACCATCTT 59.084 45.455 0.00 0.00 0.00 2.40
39 40 2.238144 CACAGAAGTCATCCCACCATCT 59.762 50.000 0.00 0.00 0.00 2.90
40 41 2.636830 CACAGAAGTCATCCCACCATC 58.363 52.381 0.00 0.00 0.00 3.51
41 42 1.283029 CCACAGAAGTCATCCCACCAT 59.717 52.381 0.00 0.00 0.00 3.55
49 50 3.244875 TGGCATGTTACCACAGAAGTCAT 60.245 43.478 0.00 0.00 35.94 3.06
84 85 0.817013 AAAGTTGTGGTGGTGCACAG 59.183 50.000 20.43 0.00 35.86 3.66
116 124 1.873591 ACAAGGAACTAAGCAACGCTG 59.126 47.619 0.00 0.00 38.49 5.18
120 128 4.127171 TGACTCACAAGGAACTAAGCAAC 58.873 43.478 0.00 0.00 38.49 4.17
133 141 8.868522 ATTGATAAGGAATTCTTGACTCACAA 57.131 30.769 5.23 3.53 36.93 3.33
134 142 8.868522 AATTGATAAGGAATTCTTGACTCACA 57.131 30.769 5.23 0.00 36.93 3.58
179 187 7.387397 GGCATGAAACCATCAAAGATGTTTTTA 59.613 33.333 0.00 1.59 42.54 1.52
182 190 5.221682 TGGCATGAAACCATCAAAGATGTTT 60.222 36.000 0.00 6.72 42.54 2.83
185 193 4.459390 TGGCATGAAACCATCAAAGATG 57.541 40.909 0.00 0.07 42.54 2.90
224 232 4.996122 GCTGGGATTCTCATACTCTCATTG 59.004 45.833 0.00 0.00 0.00 2.82
225 233 4.262377 CGCTGGGATTCTCATACTCTCATT 60.262 45.833 0.00 0.00 0.00 2.57
235 243 0.690192 TGGAAACGCTGGGATTCTCA 59.310 50.000 12.99 7.80 0.00 3.27
238 246 0.960364 TGCTGGAAACGCTGGGATTC 60.960 55.000 6.23 6.23 0.00 2.52
240 248 1.074775 TTGCTGGAAACGCTGGGAT 59.925 52.632 0.00 0.00 0.00 3.85
248 256 2.887152 ACTCTTGATGGTTGCTGGAAAC 59.113 45.455 0.00 0.00 0.00 2.78
250 258 2.106338 TGACTCTTGATGGTTGCTGGAA 59.894 45.455 0.00 0.00 0.00 3.53
276 284 3.902881 TTTGCACAATTTGGGTGAGTT 57.097 38.095 0.00 0.00 38.54 3.01
282 290 5.295950 TGTCTACAATTTGCACAATTTGGG 58.704 37.500 17.49 0.00 36.51 4.12
289 297 2.954989 TGGCTTGTCTACAATTTGCACA 59.045 40.909 7.56 0.00 35.02 4.57
290 298 3.641437 TGGCTTGTCTACAATTTGCAC 57.359 42.857 7.56 0.00 35.02 4.57
297 305 3.888323 TCAGCAATTTGGCTTGTCTACAA 59.112 39.130 0.00 0.00 42.71 2.41
304 312 3.777478 CCATACTCAGCAATTTGGCTTG 58.223 45.455 0.00 0.00 42.71 4.01
316 325 3.055591 CAATGCTAGTCGCCATACTCAG 58.944 50.000 0.00 0.00 38.05 3.35
318 327 2.035961 TCCAATGCTAGTCGCCATACTC 59.964 50.000 0.00 0.00 38.05 2.59
320 329 2.408050 CTCCAATGCTAGTCGCCATAC 58.592 52.381 0.00 0.00 38.05 2.39
325 334 1.889573 GGGCTCCAATGCTAGTCGC 60.890 63.158 0.00 0.00 39.77 5.19
354 363 5.673337 TGTTTCTTCTGTACTGCAATGAC 57.327 39.130 0.00 0.00 0.00 3.06
356 365 8.292448 ACTAATTGTTTCTTCTGTACTGCAATG 58.708 33.333 0.00 0.00 0.00 2.82
357 366 8.396272 ACTAATTGTTTCTTCTGTACTGCAAT 57.604 30.769 0.00 0.00 0.00 3.56
359 368 6.426937 GGACTAATTGTTTCTTCTGTACTGCA 59.573 38.462 0.00 0.00 0.00 4.41
360 369 6.128254 GGGACTAATTGTTTCTTCTGTACTGC 60.128 42.308 0.00 0.00 0.00 4.40
361 370 6.934645 TGGGACTAATTGTTTCTTCTGTACTG 59.065 38.462 0.00 0.00 0.00 2.74
366 377 5.065218 CGGATGGGACTAATTGTTTCTTCTG 59.935 44.000 0.00 0.00 0.00 3.02
368 379 4.201920 GCGGATGGGACTAATTGTTTCTTC 60.202 45.833 0.00 0.00 0.00 2.87
370 381 3.279434 GCGGATGGGACTAATTGTTTCT 58.721 45.455 0.00 0.00 0.00 2.52
401 412 2.289547 CTGGGTTACTTTTCACACACGG 59.710 50.000 0.00 0.00 0.00 4.94
402 413 2.940410 ACTGGGTTACTTTTCACACACG 59.060 45.455 0.00 0.00 0.00 4.49
414 427 3.554731 GCATCTAGCGTTTACTGGGTTAC 59.445 47.826 0.00 0.00 0.00 2.50
444 457 4.100189 ACTCCAGTAGCTCATGTCCAATAC 59.900 45.833 0.00 0.00 0.00 1.89
460 474 4.910458 ACCATGTTTTAGCTACTCCAGT 57.090 40.909 0.00 0.00 0.00 4.00
472 486 9.139174 CGAAATAAATGAAAGCTACCATGTTTT 57.861 29.630 2.02 3.51 0.00 2.43
488 502 8.542132 CCCAGATTTTATGTTGCGAAATAAATG 58.458 33.333 9.69 6.08 30.49 2.32
535 550 4.582240 TGTTACATGCATTCACAAGTTCCA 59.418 37.500 0.00 0.00 0.00 3.53
609 668 9.950496 AAATGTACATTTGAGAGAAGTAGACAT 57.050 29.630 28.59 2.73 39.36 3.06
712 772 3.805422 AGTTTTGTTGCATTGCATGACAG 59.195 39.130 12.95 0.00 38.76 3.51
713 773 3.556365 CAGTTTTGTTGCATTGCATGACA 59.444 39.130 12.95 11.95 38.76 3.58
714 774 3.605231 GCAGTTTTGTTGCATTGCATGAC 60.605 43.478 12.95 9.29 41.17 3.06
715 775 2.544686 GCAGTTTTGTTGCATTGCATGA 59.455 40.909 12.95 0.00 41.17 3.07
716 776 2.288186 TGCAGTTTTGTTGCATTGCATG 59.712 40.909 12.95 6.96 45.89 4.06
717 777 2.562635 TGCAGTTTTGTTGCATTGCAT 58.437 38.095 12.95 0.00 45.89 3.96
718 778 2.019948 TGCAGTTTTGTTGCATTGCA 57.980 40.000 7.38 7.38 45.89 4.08
762 822 8.615211 TGCATCTGTTATCATCAACATAGAAAC 58.385 33.333 0.00 0.00 37.75 2.78
768 828 5.235831 CGTCTGCATCTGTTATCATCAACAT 59.764 40.000 0.00 0.00 37.75 2.71
819 881 5.221702 CCCAAATTCAAGTGTCCCTGAAATT 60.222 40.000 0.00 0.00 0.00 1.82
829 891 3.370104 TGTTGTCCCCAAATTCAAGTGT 58.630 40.909 0.00 0.00 30.94 3.55
831 893 5.600484 TGTTATGTTGTCCCCAAATTCAAGT 59.400 36.000 0.00 0.00 30.94 3.16
841 903 5.810074 GCAAACAATATGTTATGTTGTCCCC 59.190 40.000 4.74 0.00 42.63 4.81
891 954 9.918630 CACACTCTGGAATCAAAATAAAGAAAT 57.081 29.630 0.00 0.00 0.00 2.17
1070 1136 1.079127 GCAGCTACGCTCCCTGAAA 60.079 57.895 0.00 0.00 36.40 2.69
1080 1146 5.164138 GCTCTCGAATTTTATAGCAGCTACG 60.164 44.000 3.59 2.02 0.00 3.51
1110 1176 0.669077 CCCACTCGGAGAAGATACGG 59.331 60.000 12.86 0.57 34.09 4.02
1114 1180 0.324738 TCTGCCCACTCGGAGAAGAT 60.325 55.000 12.86 0.00 34.09 2.40
1131 1197 2.659610 GCCACAGCTCGGACTTCT 59.340 61.111 2.71 0.00 35.50 2.85
1212 1278 3.571828 AGGTAGACCACTCATCATCATCG 59.428 47.826 0.66 0.00 38.89 3.84
1239 1305 5.357596 GTGTAGAACCTCGTCTCCTATCTTT 59.642 44.000 0.00 0.00 0.00 2.52
1260 1326 2.341257 CACTTTCGCAGCTCTATGTGT 58.659 47.619 0.00 0.00 32.46 3.72
1275 1341 1.076024 ACCATGATGTCTGCCCACTTT 59.924 47.619 0.00 0.00 0.00 2.66
1333 1399 3.753797 GGTTCATGGAAGAAGAGACAACC 59.246 47.826 0.00 0.00 0.00 3.77
1374 1440 5.165961 TGTTCTCTTAACTGATTCAGGGG 57.834 43.478 17.66 0.24 35.51 4.79
1451 1517 1.423845 GTTGTCGCATAACCCGCTG 59.576 57.895 0.00 0.00 0.00 5.18
1452 1518 1.743995 GGTTGTCGCATAACCCGCT 60.744 57.895 0.00 0.00 41.34 5.52
1454 1520 1.087771 GGAGGTTGTCGCATAACCCG 61.088 60.000 9.42 0.00 46.93 5.28
1487 1553 0.824109 TCTTGTAGTCCCATGCTCGG 59.176 55.000 0.00 0.00 0.00 4.63
1616 1682 2.348998 CAGGCCAGCCTCTTCGTT 59.651 61.111 8.61 0.00 46.28 3.85
1735 1801 2.436109 GGCTGCTGGAAGGGTTCA 59.564 61.111 0.00 0.00 0.00 3.18
1801 1875 5.235616 CGGCACAGAAAACTCAAGTACTAAA 59.764 40.000 0.00 0.00 0.00 1.85
1828 1934 2.677836 CACCGATAAACACCCAGATGTG 59.322 50.000 0.00 0.00 42.05 3.21
1887 1999 8.888579 ACATCTACTACAGTAACAAATATGCC 57.111 34.615 0.00 0.00 0.00 4.40
1932 2128 0.038166 TGGAACAACCAGCATCTCCC 59.962 55.000 0.00 0.00 44.64 4.30
1942 2138 5.591099 CATAACATTATGGCTGGAACAACC 58.409 41.667 4.02 0.00 46.45 3.77
1943 2139 5.043248 GCATAACATTATGGCTGGAACAAC 58.957 41.667 12.41 0.00 40.61 3.32
1966 2170 6.041511 CGGAAGCAGATTCATCCATAGATAG 58.958 44.000 0.00 0.00 39.91 2.08
1997 2210 6.820656 ACATTTGCAAACCATCACAGTAAAAA 59.179 30.769 15.41 0.00 0.00 1.94
2034 2247 1.375268 GCTTCTTGCTGACGAGCCT 60.375 57.895 0.00 0.00 45.57 4.58
2036 2249 2.734673 CCGCTTCTTGCTGACGAGC 61.735 63.158 0.00 0.00 46.44 5.03
2050 2263 1.726853 CGGAGAAACTGAATTCCGCT 58.273 50.000 2.27 0.00 44.99 5.52
2053 2266 4.065789 ACAAGACGGAGAAACTGAATTCC 58.934 43.478 2.27 0.00 0.00 3.01
2054 2267 4.083802 CCACAAGACGGAGAAACTGAATTC 60.084 45.833 0.00 0.00 0.00 2.17
2060 2273 1.202651 CCACCACAAGACGGAGAAACT 60.203 52.381 0.00 0.00 0.00 2.66
2061 2274 1.202604 TCCACCACAAGACGGAGAAAC 60.203 52.381 0.00 0.00 0.00 2.78
2078 2291 2.427320 GCAGACTGCAGGTGTCCA 59.573 61.111 22.62 0.00 44.26 4.02
2119 2332 1.958715 CCACGTCACATTCGCACCA 60.959 57.895 0.00 0.00 0.00 4.17
2120 2333 2.860293 CCACGTCACATTCGCACC 59.140 61.111 0.00 0.00 0.00 5.01
2124 2340 4.483683 CGCGCCACGTCACATTCG 62.484 66.667 0.00 0.00 36.87 3.34
2249 2465 0.908198 AGGAGTAGCAAGAAGGGCAG 59.092 55.000 0.00 0.00 0.00 4.85
2252 2468 3.680196 GCAACTAGGAGTAGCAAGAAGGG 60.680 52.174 0.00 0.00 0.00 3.95
2270 2486 1.439679 GTGTAGTGCTGGTAGGCAAC 58.560 55.000 0.00 0.00 44.18 4.17
2271 2487 0.323629 GGTGTAGTGCTGGTAGGCAA 59.676 55.000 0.00 0.00 44.18 4.52
2273 2489 0.108138 CTGGTGTAGTGCTGGTAGGC 60.108 60.000 0.00 0.00 0.00 3.93
2274 2490 1.267121 ACTGGTGTAGTGCTGGTAGG 58.733 55.000 0.00 0.00 38.49 3.18
2279 2495 3.704566 TCCCTATTACTGGTGTAGTGCTG 59.295 47.826 0.00 0.00 40.65 4.41
2280 2496 3.705072 GTCCCTATTACTGGTGTAGTGCT 59.295 47.826 0.00 0.00 40.65 4.40
2281 2497 3.490419 CGTCCCTATTACTGGTGTAGTGC 60.490 52.174 0.00 0.00 40.65 4.40
2282 2498 3.698040 ACGTCCCTATTACTGGTGTAGTG 59.302 47.826 0.00 0.00 40.65 2.74
2283 2499 3.973425 ACGTCCCTATTACTGGTGTAGT 58.027 45.455 0.00 0.00 43.56 2.73
2284 2500 4.996788 AACGTCCCTATTACTGGTGTAG 57.003 45.455 0.00 0.00 0.00 2.74
2285 2501 5.481105 CAAAACGTCCCTATTACTGGTGTA 58.519 41.667 0.00 0.00 0.00 2.90
2286 2502 4.320870 CAAAACGTCCCTATTACTGGTGT 58.679 43.478 0.00 0.00 0.00 4.16
2296 2512 2.618442 ACGAAACCAAAACGTCCCTA 57.382 45.000 0.00 0.00 35.33 3.53
2300 2516 2.286025 ACAGCTACGAAACCAAAACGTC 59.714 45.455 0.00 0.00 40.61 4.34
2319 2535 9.050601 GTCAAATTGAAAATTTGGGATGTTACA 57.949 29.630 19.85 0.00 38.97 2.41
2320 2536 9.050601 TGTCAAATTGAAAATTTGGGATGTTAC 57.949 29.630 19.85 12.07 38.97 2.50
2321 2537 9.790344 ATGTCAAATTGAAAATTTGGGATGTTA 57.210 25.926 19.85 2.50 38.97 2.41
2322 2538 8.569641 CATGTCAAATTGAAAATTTGGGATGTT 58.430 29.630 19.85 3.52 38.97 2.71
2323 2539 7.720515 ACATGTCAAATTGAAAATTTGGGATGT 59.279 29.630 21.85 21.85 38.97 3.06
2324 2540 8.101654 ACATGTCAAATTGAAAATTTGGGATG 57.898 30.769 19.85 20.59 38.97 3.51
2325 2541 8.694581 AACATGTCAAATTGAAAATTTGGGAT 57.305 26.923 19.85 12.05 38.97 3.85
2326 2542 9.790344 ATAACATGTCAAATTGAAAATTTGGGA 57.210 25.926 19.85 10.73 38.97 4.37
2336 2552 9.898152 TGACCTATGTATAACATGTCAAATTGA 57.102 29.630 0.00 0.00 38.06 2.57
2342 2558 9.927668 CATGTATGACCTATGTATAACATGTCA 57.072 33.333 12.71 12.71 42.11 3.58
2343 2559 8.873830 GCATGTATGACCTATGTATAACATGTC 58.126 37.037 0.00 3.76 39.53 3.06
2344 2560 8.374743 TGCATGTATGACCTATGTATAACATGT 58.625 33.333 12.19 0.00 39.53 3.21
2345 2561 8.776376 TGCATGTATGACCTATGTATAACATG 57.224 34.615 7.55 7.55 39.53 3.21
2384 2600 3.989167 CGAGGATTGCAAATGAAAAAGCA 59.011 39.130 1.71 0.00 34.79 3.91
2385 2601 4.236935 TCGAGGATTGCAAATGAAAAAGC 58.763 39.130 1.71 0.00 0.00 3.51
2386 2602 6.768029 TTTCGAGGATTGCAAATGAAAAAG 57.232 33.333 1.71 0.00 0.00 2.27
2387 2603 6.368516 GGATTTCGAGGATTGCAAATGAAAAA 59.631 34.615 1.71 1.07 0.00 1.94
2388 2604 5.868801 GGATTTCGAGGATTGCAAATGAAAA 59.131 36.000 1.71 0.51 0.00 2.29
2389 2605 5.185635 AGGATTTCGAGGATTGCAAATGAAA 59.814 36.000 1.71 9.89 0.00 2.69
2390 2606 4.706476 AGGATTTCGAGGATTGCAAATGAA 59.294 37.500 1.71 0.64 0.00 2.57
2391 2607 4.272489 AGGATTTCGAGGATTGCAAATGA 58.728 39.130 1.71 0.00 0.00 2.57
2392 2608 4.644103 AGGATTTCGAGGATTGCAAATG 57.356 40.909 1.71 0.00 0.00 2.32
2393 2609 6.152661 TGTTTAGGATTTCGAGGATTGCAAAT 59.847 34.615 1.71 0.00 0.00 2.32
2394 2610 5.475220 TGTTTAGGATTTCGAGGATTGCAAA 59.525 36.000 1.71 0.00 0.00 3.68
2395 2611 5.007034 TGTTTAGGATTTCGAGGATTGCAA 58.993 37.500 0.00 0.00 0.00 4.08
2396 2612 4.584874 TGTTTAGGATTTCGAGGATTGCA 58.415 39.130 0.00 0.00 0.00 4.08
2397 2613 5.123979 AGTTGTTTAGGATTTCGAGGATTGC 59.876 40.000 0.00 0.00 0.00 3.56
2398 2614 6.371548 TGAGTTGTTTAGGATTTCGAGGATTG 59.628 38.462 0.00 0.00 0.00 2.67
2399 2615 6.472887 TGAGTTGTTTAGGATTTCGAGGATT 58.527 36.000 0.00 0.00 0.00 3.01
2400 2616 6.049955 TGAGTTGTTTAGGATTTCGAGGAT 57.950 37.500 0.00 0.00 0.00 3.24
2401 2617 5.477607 TGAGTTGTTTAGGATTTCGAGGA 57.522 39.130 0.00 0.00 0.00 3.71
2402 2618 5.122396 CCTTGAGTTGTTTAGGATTTCGAGG 59.878 44.000 0.00 0.00 0.00 4.63
2403 2619 5.932303 TCCTTGAGTTGTTTAGGATTTCGAG 59.068 40.000 0.00 0.00 32.00 4.04
2404 2620 5.699458 GTCCTTGAGTTGTTTAGGATTTCGA 59.301 40.000 0.00 0.00 38.92 3.71
2405 2621 5.106673 GGTCCTTGAGTTGTTTAGGATTTCG 60.107 44.000 0.00 0.00 38.92 3.46
2406 2622 6.004574 AGGTCCTTGAGTTGTTTAGGATTTC 58.995 40.000 0.00 0.00 38.92 2.17
2407 2623 5.953571 AGGTCCTTGAGTTGTTTAGGATTT 58.046 37.500 0.00 0.00 38.92 2.17
2408 2624 5.515008 GGAGGTCCTTGAGTTGTTTAGGATT 60.515 44.000 0.00 0.00 38.92 3.01
2409 2625 4.019231 GGAGGTCCTTGAGTTGTTTAGGAT 60.019 45.833 0.00 0.00 38.92 3.24
2410 2626 3.326880 GGAGGTCCTTGAGTTGTTTAGGA 59.673 47.826 0.00 0.00 34.50 2.94
2411 2627 3.676093 GGAGGTCCTTGAGTTGTTTAGG 58.324 50.000 0.00 0.00 0.00 2.69
2412 2628 3.326747 CGGAGGTCCTTGAGTTGTTTAG 58.673 50.000 0.00 0.00 0.00 1.85
2413 2629 3.396260 CGGAGGTCCTTGAGTTGTTTA 57.604 47.619 0.00 0.00 0.00 2.01
2414 2630 2.256117 CGGAGGTCCTTGAGTTGTTT 57.744 50.000 0.00 0.00 0.00 2.83
2429 2645 0.397816 ATCCCCAACTCTCTCCGGAG 60.398 60.000 26.32 26.32 40.73 4.63
2430 2646 0.042731 AATCCCCAACTCTCTCCGGA 59.957 55.000 2.93 2.93 0.00 5.14
2431 2647 0.912486 AAATCCCCAACTCTCTCCGG 59.088 55.000 0.00 0.00 0.00 5.14
2432 2648 2.237392 AGAAAATCCCCAACTCTCTCCG 59.763 50.000 0.00 0.00 0.00 4.63
2433 2649 5.437191 TTAGAAAATCCCCAACTCTCTCC 57.563 43.478 0.00 0.00 0.00 3.71
2434 2650 7.946381 AAATTAGAAAATCCCCAACTCTCTC 57.054 36.000 0.00 0.00 0.00 3.20
2435 2651 7.950124 TGAAAATTAGAAAATCCCCAACTCTCT 59.050 33.333 0.00 0.00 0.00 3.10
2436 2652 8.122472 TGAAAATTAGAAAATCCCCAACTCTC 57.878 34.615 0.00 0.00 0.00 3.20
2437 2653 8.670521 ATGAAAATTAGAAAATCCCCAACTCT 57.329 30.769 0.00 0.00 0.00 3.24
2466 2682 9.869757 TCGTCTTCACTATTTGATAAAATCTCA 57.130 29.630 0.00 0.00 32.84 3.27
2468 2684 9.319143 CCTCGTCTTCACTATTTGATAAAATCT 57.681 33.333 0.00 0.00 32.84 2.40
2469 2685 9.314321 TCCTCGTCTTCACTATTTGATAAAATC 57.686 33.333 0.00 0.00 32.84 2.17
2470 2686 9.838339 ATCCTCGTCTTCACTATTTGATAAAAT 57.162 29.630 0.00 0.00 32.84 1.82
2471 2687 9.667107 AATCCTCGTCTTCACTATTTGATAAAA 57.333 29.630 0.00 0.00 32.84 1.52
2472 2688 9.667107 AAATCCTCGTCTTCACTATTTGATAAA 57.333 29.630 0.00 0.00 32.84 1.40
2473 2689 9.098355 CAAATCCTCGTCTTCACTATTTGATAA 57.902 33.333 0.00 0.00 35.76 1.75
2474 2690 8.474831 TCAAATCCTCGTCTTCACTATTTGATA 58.525 33.333 0.00 0.00 37.10 2.15
2475 2691 7.331026 TCAAATCCTCGTCTTCACTATTTGAT 58.669 34.615 0.00 0.00 37.10 2.57
2476 2692 6.697395 TCAAATCCTCGTCTTCACTATTTGA 58.303 36.000 0.00 0.00 38.71 2.69
2477 2693 6.968131 TCAAATCCTCGTCTTCACTATTTG 57.032 37.500 0.00 0.00 35.30 2.32
2478 2694 8.567285 AAATCAAATCCTCGTCTTCACTATTT 57.433 30.769 0.00 0.00 0.00 1.40
2479 2695 8.567285 AAAATCAAATCCTCGTCTTCACTATT 57.433 30.769 0.00 0.00 0.00 1.73
2480 2696 9.667107 TTAAAATCAAATCCTCGTCTTCACTAT 57.333 29.630 0.00 0.00 0.00 2.12
2481 2697 9.667107 ATTAAAATCAAATCCTCGTCTTCACTA 57.333 29.630 0.00 0.00 0.00 2.74
2482 2698 7.979444 TTAAAATCAAATCCTCGTCTTCACT 57.021 32.000 0.00 0.00 0.00 3.41
2497 2713 9.469097 TCCCGGAGAGAAAATAATTAAAATCAA 57.531 29.630 0.73 0.00 0.00 2.57
2498 2714 9.469097 TTCCCGGAGAGAAAATAATTAAAATCA 57.531 29.630 0.73 0.00 0.00 2.57
2506 2722 9.640952 TGAAATATTTCCCGGAGAGAAAATAAT 57.359 29.630 22.42 0.00 37.86 1.28
2507 2723 9.640952 ATGAAATATTTCCCGGAGAGAAAATAA 57.359 29.630 22.42 1.74 37.86 1.40
2508 2724 9.640952 AATGAAATATTTCCCGGAGAGAAAATA 57.359 29.630 22.42 5.78 37.86 1.40
2509 2725 8.539117 AATGAAATATTTCCCGGAGAGAAAAT 57.461 30.769 22.42 3.62 37.86 1.82
2510 2726 7.954666 AATGAAATATTTCCCGGAGAGAAAA 57.045 32.000 22.42 2.90 37.86 2.29
2511 2727 7.954666 AAATGAAATATTTCCCGGAGAGAAA 57.045 32.000 22.42 4.69 38.90 2.52
2512 2728 7.954666 AAAATGAAATATTTCCCGGAGAGAA 57.045 32.000 22.42 0.00 36.36 2.87
2513 2729 9.469097 TTTAAAATGAAATATTTCCCGGAGAGA 57.531 29.630 22.42 4.68 36.36 3.10
2544 2760 9.621239 AGAAGTCATATTATCTCCCCTCATTTA 57.379 33.333 0.00 0.00 0.00 1.40
2545 2761 8.517323 AGAAGTCATATTATCTCCCCTCATTT 57.483 34.615 0.00 0.00 0.00 2.32
2546 2762 8.144862 GAGAAGTCATATTATCTCCCCTCATT 57.855 38.462 0.00 0.00 33.75 2.57
2547 2763 7.732222 GAGAAGTCATATTATCTCCCCTCAT 57.268 40.000 0.00 0.00 33.75 2.90
2564 2780 9.503427 CGGTATTTCAATTATTTTGGAGAAGTC 57.497 33.333 0.00 0.00 0.00 3.01
2565 2781 8.466798 CCGGTATTTCAATTATTTTGGAGAAGT 58.533 33.333 0.00 0.00 0.00 3.01
2566 2782 8.682710 TCCGGTATTTCAATTATTTTGGAGAAG 58.317 33.333 0.00 0.00 0.00 2.85
2567 2783 8.582657 TCCGGTATTTCAATTATTTTGGAGAA 57.417 30.769 0.00 0.00 0.00 2.87
2568 2784 7.284489 CCTCCGGTATTTCAATTATTTTGGAGA 59.716 37.037 0.00 0.00 40.34 3.71
2569 2785 7.284489 TCCTCCGGTATTTCAATTATTTTGGAG 59.716 37.037 0.00 0.00 38.23 3.86
2570 2786 7.120051 TCCTCCGGTATTTCAATTATTTTGGA 58.880 34.615 0.00 0.00 0.00 3.53
2571 2787 7.341445 TCCTCCGGTATTTCAATTATTTTGG 57.659 36.000 0.00 0.00 0.00 3.28
2572 2788 9.646427 TTTTCCTCCGGTATTTCAATTATTTTG 57.354 29.630 0.00 0.00 0.00 2.44
2575 2791 9.816354 CATTTTTCCTCCGGTATTTCAATTATT 57.184 29.630 0.00 0.00 0.00 1.40
2576 2792 8.977412 ACATTTTTCCTCCGGTATTTCAATTAT 58.023 29.630 0.00 0.00 0.00 1.28
2577 2793 8.356000 ACATTTTTCCTCCGGTATTTCAATTA 57.644 30.769 0.00 0.00 0.00 1.40
2578 2794 7.239763 ACATTTTTCCTCCGGTATTTCAATT 57.760 32.000 0.00 0.00 0.00 2.32
2579 2795 6.850752 ACATTTTTCCTCCGGTATTTCAAT 57.149 33.333 0.00 0.00 0.00 2.57
2580 2796 6.658188 AACATTTTTCCTCCGGTATTTCAA 57.342 33.333 0.00 0.00 0.00 2.69
2581 2797 7.762588 TTAACATTTTTCCTCCGGTATTTCA 57.237 32.000 0.00 0.00 0.00 2.69
2582 2798 9.647797 ATTTTAACATTTTTCCTCCGGTATTTC 57.352 29.630 0.00 0.00 0.00 2.17
2583 2799 9.647797 GATTTTAACATTTTTCCTCCGGTATTT 57.352 29.630 0.00 0.00 0.00 1.40
2584 2800 8.808092 TGATTTTAACATTTTTCCTCCGGTATT 58.192 29.630 0.00 0.00 0.00 1.89
2585 2801 8.356000 TGATTTTAACATTTTTCCTCCGGTAT 57.644 30.769 0.00 0.00 0.00 2.73
2586 2802 7.762588 TGATTTTAACATTTTTCCTCCGGTA 57.237 32.000 0.00 0.00 0.00 4.02
2587 2803 6.658188 TGATTTTAACATTTTTCCTCCGGT 57.342 33.333 0.00 0.00 0.00 5.28
2588 2804 8.546597 AAATGATTTTAACATTTTTCCTCCGG 57.453 30.769 0.00 0.00 42.73 5.14
2614 2830 9.646427 CCCGAATAAACTCAAATAAAAATCCAA 57.354 29.630 0.00 0.00 0.00 3.53
2615 2831 9.026121 TCCCGAATAAACTCAAATAAAAATCCA 57.974 29.630 0.00 0.00 0.00 3.41
2625 2841 9.145865 GCAAATAAAATCCCGAATAAACTCAAA 57.854 29.630 0.00 0.00 0.00 2.69
2626 2842 8.527810 AGCAAATAAAATCCCGAATAAACTCAA 58.472 29.630 0.00 0.00 0.00 3.02
2627 2843 8.062065 AGCAAATAAAATCCCGAATAAACTCA 57.938 30.769 0.00 0.00 0.00 3.41
2628 2844 7.648112 GGAGCAAATAAAATCCCGAATAAACTC 59.352 37.037 0.00 0.00 0.00 3.01
2629 2845 7.342026 AGGAGCAAATAAAATCCCGAATAAACT 59.658 33.333 0.00 0.00 31.86 2.66
2630 2846 7.489160 AGGAGCAAATAAAATCCCGAATAAAC 58.511 34.615 0.00 0.00 31.86 2.01
2631 2847 7.654022 AGGAGCAAATAAAATCCCGAATAAA 57.346 32.000 0.00 0.00 31.86 1.40
2632 2848 8.215050 TCTAGGAGCAAATAAAATCCCGAATAA 58.785 33.333 0.00 0.00 31.86 1.40
2633 2849 7.741785 TCTAGGAGCAAATAAAATCCCGAATA 58.258 34.615 0.00 0.00 31.86 1.75
2634 2850 6.601332 TCTAGGAGCAAATAAAATCCCGAAT 58.399 36.000 0.00 0.00 31.86 3.34
2635 2851 5.996644 TCTAGGAGCAAATAAAATCCCGAA 58.003 37.500 0.00 0.00 31.86 4.30
2636 2852 5.623956 TCTAGGAGCAAATAAAATCCCGA 57.376 39.130 0.00 0.00 31.86 5.14
2637 2853 6.693315 TTTCTAGGAGCAAATAAAATCCCG 57.307 37.500 0.00 0.00 31.86 5.14
2638 2854 9.317936 CATTTTTCTAGGAGCAAATAAAATCCC 57.682 33.333 0.00 0.00 31.86 3.85
2639 2855 9.875691 ACATTTTTCTAGGAGCAAATAAAATCC 57.124 29.630 0.00 0.00 0.00 3.01
2642 2858 8.987890 GCAACATTTTTCTAGGAGCAAATAAAA 58.012 29.630 0.00 0.00 0.00 1.52
2643 2859 8.147058 TGCAACATTTTTCTAGGAGCAAATAAA 58.853 29.630 0.00 0.00 0.00 1.40
2644 2860 7.665690 TGCAACATTTTTCTAGGAGCAAATAA 58.334 30.769 0.00 0.00 0.00 1.40
2645 2861 7.225784 TGCAACATTTTTCTAGGAGCAAATA 57.774 32.000 0.00 0.00 0.00 1.40
2646 2862 6.100404 TGCAACATTTTTCTAGGAGCAAAT 57.900 33.333 0.00 0.00 0.00 2.32
2647 2863 5.528043 TGCAACATTTTTCTAGGAGCAAA 57.472 34.783 0.00 0.00 0.00 3.68
2648 2864 5.243507 TCATGCAACATTTTTCTAGGAGCAA 59.756 36.000 0.00 0.00 32.83 3.91
2649 2865 4.766373 TCATGCAACATTTTTCTAGGAGCA 59.234 37.500 0.00 0.00 0.00 4.26
2650 2866 5.314923 TCATGCAACATTTTTCTAGGAGC 57.685 39.130 0.00 0.00 0.00 4.70
2651 2867 9.859427 TTAAATCATGCAACATTTTTCTAGGAG 57.141 29.630 10.55 0.00 0.00 3.69
2658 2874 9.745880 TGCAATTTTAAATCATGCAACATTTTT 57.254 22.222 12.80 1.43 43.39 1.94
2661 2877 9.915629 AAATGCAATTTTAAATCATGCAACATT 57.084 22.222 17.36 11.65 46.10 2.71
2678 2894 4.379302 TTTTGGCCCCTAAAATGCAATT 57.621 36.364 0.00 0.00 38.98 2.32
2679 2895 4.379302 TTTTTGGCCCCTAAAATGCAAT 57.621 36.364 0.00 0.00 0.00 3.56
2680 2896 3.864789 TTTTTGGCCCCTAAAATGCAA 57.135 38.095 0.00 0.00 0.00 4.08
2724 2940 9.724839 CAAAACAAGTTTTCTCGGTCTAAATAA 57.275 29.630 7.89 0.00 40.45 1.40
2725 2941 8.347035 CCAAAACAAGTTTTCTCGGTCTAAATA 58.653 33.333 7.89 0.00 40.45 1.40
2726 2942 7.067737 TCCAAAACAAGTTTTCTCGGTCTAAAT 59.932 33.333 7.89 0.00 40.45 1.40
2727 2943 6.374894 TCCAAAACAAGTTTTCTCGGTCTAAA 59.625 34.615 7.89 0.00 40.45 1.85
2728 2944 5.881443 TCCAAAACAAGTTTTCTCGGTCTAA 59.119 36.000 7.89 0.00 40.45 2.10
2729 2945 5.430007 TCCAAAACAAGTTTTCTCGGTCTA 58.570 37.500 7.89 0.00 40.45 2.59
2730 2946 4.266714 TCCAAAACAAGTTTTCTCGGTCT 58.733 39.130 7.89 0.00 40.45 3.85
2731 2947 4.625972 TCCAAAACAAGTTTTCTCGGTC 57.374 40.909 7.89 0.00 40.45 4.79
2732 2948 5.592104 ATTCCAAAACAAGTTTTCTCGGT 57.408 34.783 7.89 0.00 40.45 4.69
2733 2949 6.902224 AAATTCCAAAACAAGTTTTCTCGG 57.098 33.333 7.89 7.29 40.45 4.63
2734 2950 9.900264 CTAAAAATTCCAAAACAAGTTTTCTCG 57.100 29.630 7.89 0.00 40.45 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.