Multiple sequence alignment - TraesCS7B01G067300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G067300 chr7B 100.000 4925 0 0 1 4925 72615939 72611015 0.000000e+00 9095.0
1 TraesCS7B01G067300 chr7B 94.737 38 0 2 374 411 72615530 72615495 1.910000e-04 58.4
2 TraesCS7B01G067300 chr7B 94.737 38 0 2 410 445 72615566 72615529 1.910000e-04 58.4
3 TraesCS7B01G067300 chr7D 92.123 4570 183 56 1 4443 113224701 113220182 0.000000e+00 6281.0
4 TraesCS7B01G067300 chr7D 87.879 99 3 4 4581 4676 113219591 113219499 1.870000e-19 108.0
5 TraesCS7B01G067300 chr7D 95.652 46 2 0 4880 4925 113156043 113155998 1.900000e-09 75.0
6 TraesCS7B01G067300 chr7D 100.000 38 0 0 374 411 113224311 113224274 2.460000e-08 71.3
7 TraesCS7B01G067300 chr7D 94.737 38 0 2 410 445 113224347 113224310 1.910000e-04 58.4
8 TraesCS7B01G067300 chr7A 93.963 2054 94 13 417 2444 118330442 118328393 0.000000e+00 3079.0
9 TraesCS7B01G067300 chr7A 89.532 1433 57 25 3129 4490 118327756 118326346 0.000000e+00 1729.0
10 TraesCS7B01G067300 chr7A 90.018 561 33 9 2537 3087 118328299 118327752 0.000000e+00 704.0
11 TraesCS7B01G067300 chr7A 89.735 302 16 3 111 411 118330701 118330414 6.020000e-99 372.0
12 TraesCS7B01G067300 chr7A 95.588 68 3 0 2446 2513 118328363 118328296 5.210000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G067300 chr7B 72611015 72615939 4924 True 3070.600 9095 96.491333 1 4925 3 chr7B.!!$R1 4924
1 TraesCS7B01G067300 chr7D 113219499 113224701 5202 True 1629.675 6281 93.684750 1 4676 4 chr7D.!!$R2 4675
2 TraesCS7B01G067300 chr7A 118326346 118330701 4355 True 1198.800 3079 91.767200 111 4490 5 chr7A.!!$R1 4379

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 281 0.239347 GATGCAGCTTTTGTGACGCT 59.761 50.000 0.0 0.0 0.0 5.07 F
1053 1107 2.296752 TGGTGATGCAAGGTCAATGTTG 59.703 45.455 0.0 0.0 0.0 3.33 F
2587 2670 2.094803 TGGGTGTGCATAATTTGAAGCG 60.095 45.455 0.0 0.0 0.0 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2099 1.405933 GCTGGGGGTCAAATTCATTGC 60.406 52.381 0.00 0.0 38.98 3.56 R
2648 2735 0.309612 CTGTTGGGCCACGTACAAAC 59.690 55.000 5.23 0.0 0.00 2.93 R
4274 4392 0.033504 GGTGAAAGCGTCAGAGTCCA 59.966 55.000 0.00 0.0 36.74 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.384668 AGCTGTGTATGATTCCGATTCG 58.615 45.455 0.00 0.00 0.00 3.34
75 92 9.120422 CTTTTCTGTTGTTTTACTGTTACGTTT 57.880 29.630 0.00 0.00 0.00 3.60
80 97 2.666836 TTTACTGTTACGTTTGCCGC 57.333 45.000 0.00 0.00 41.42 6.53
86 103 0.793104 GTTACGTTTGCCGCTCATGC 60.793 55.000 0.00 0.00 41.42 4.06
145 173 1.352056 GGCGAGGCGAAGTTATTGC 59.648 57.895 0.00 0.00 0.00 3.56
152 180 3.474693 GGCGAAGTTATTGCCGTAAAA 57.525 42.857 0.00 0.00 39.30 1.52
153 181 3.422655 GGCGAAGTTATTGCCGTAAAAG 58.577 45.455 0.00 0.00 39.30 2.27
154 182 3.422655 GCGAAGTTATTGCCGTAAAAGG 58.577 45.455 0.00 0.00 0.00 3.11
169 197 1.303091 AAAGGGCCAATGCGTACGAC 61.303 55.000 21.65 11.11 38.85 4.34
170 198 2.125269 GGGCCAATGCGTACGACT 60.125 61.111 21.65 1.13 38.85 4.18
193 221 6.034683 ACTGAAGCGTTAGATATTTCAACGTC 59.965 38.462 14.74 8.83 45.08 4.34
228 257 2.560504 TGGCGTATAGAAACTGCATGG 58.439 47.619 0.00 0.00 0.00 3.66
252 281 0.239347 GATGCAGCTTTTGTGACGCT 59.761 50.000 0.00 0.00 0.00 5.07
262 291 2.356553 GTGACGCTGGCGGTTGTA 60.357 61.111 18.99 0.00 44.69 2.41
300 329 8.164539 GCAGTTATATCTGAGCCAAGAAAGGC 62.165 46.154 13.87 0.00 43.66 4.35
467 498 5.700722 ATGCTGATAATACTGTTGCCATG 57.299 39.130 0.00 0.00 0.00 3.66
472 503 4.576053 TGATAATACTGTTGCCATGTCTGC 59.424 41.667 0.00 0.00 0.00 4.26
473 504 2.495155 ATACTGTTGCCATGTCTGCA 57.505 45.000 0.00 0.00 36.84 4.41
510 542 8.840833 AAAAAGAAACTTTTTGAAGCCTAACA 57.159 26.923 17.49 0.00 31.05 2.41
522 554 7.966246 TTGAAGCCTAACAGTACGATTTAAA 57.034 32.000 0.00 0.00 0.00 1.52
548 580 4.694037 ACCGACTAGTTTGGCAATTCTAAC 59.306 41.667 13.44 0.00 0.00 2.34
551 583 6.077838 CGACTAGTTTGGCAATTCTAACAAC 58.922 40.000 0.00 0.00 0.00 3.32
552 584 6.073222 CGACTAGTTTGGCAATTCTAACAACT 60.073 38.462 0.00 1.18 0.00 3.16
553 585 7.519970 CGACTAGTTTGGCAATTCTAACAACTT 60.520 37.037 0.00 0.00 0.00 2.66
554 586 7.425606 ACTAGTTTGGCAATTCTAACAACTTG 58.574 34.615 0.00 2.70 0.00 3.16
556 588 6.273071 AGTTTGGCAATTCTAACAACTTGTC 58.727 36.000 0.00 0.00 0.00 3.18
557 589 5.843673 TTGGCAATTCTAACAACTTGTCA 57.156 34.783 0.00 0.00 31.86 3.58
622 674 9.036671 GCTTACCTAGATTAGAGTTCACATTTC 57.963 37.037 0.00 0.00 0.00 2.17
625 677 7.612677 ACCTAGATTAGAGTTCACATTTCGTT 58.387 34.615 0.00 0.00 0.00 3.85
638 690 8.788813 GTTCACATTTCGTTTGCTCTAAATATG 58.211 33.333 0.00 0.00 0.00 1.78
685 737 9.581099 ACCTTATTGGATTAGTTTTTATTTGCG 57.419 29.630 0.00 0.00 39.71 4.85
723 775 7.818930 TGATAAGCATGAAATTGTTTTTCCCTC 59.181 33.333 0.00 0.00 0.00 4.30
794 846 5.440610 AGCTACCTCACAGAAAATTATGGG 58.559 41.667 0.00 0.00 0.00 4.00
799 851 7.027874 ACCTCACAGAAAATTATGGGAGTAA 57.972 36.000 16.37 0.00 45.85 2.24
1053 1107 2.296752 TGGTGATGCAAGGTCAATGTTG 59.703 45.455 0.00 0.00 0.00 3.33
1063 1117 5.238214 GCAAGGTCAATGTTGCCAAATAAAA 59.762 36.000 8.28 0.00 42.73 1.52
1173 1227 2.715763 AGTCTGAACTTAGGGGGTCA 57.284 50.000 0.00 0.00 28.74 4.02
1356 1410 4.446889 GGATTATCCTTGAATGCACCTCCT 60.447 45.833 3.59 0.00 32.53 3.69
1626 1680 3.132289 CAGCATCAGATGGCCTTTTTGAT 59.868 43.478 12.54 8.85 0.00 2.57
1679 1733 3.688673 GGATTTTCAGCAGAGAGTCTTGG 59.311 47.826 0.00 0.00 0.00 3.61
1785 1840 9.877178 CTGTAATTTTCACACTAACTCCTCTAT 57.123 33.333 0.00 0.00 0.00 1.98
1810 1865 4.036027 CGTCCAATCAGAGCATTGCTTAAT 59.964 41.667 13.35 4.24 39.88 1.40
1829 1884 8.646004 TGCTTAATATAGCTGACTCTTCTTGAT 58.354 33.333 0.00 0.00 41.76 2.57
1885 1940 4.357018 GCTCAAGGCACCAGTATTAAAC 57.643 45.455 0.00 0.00 41.35 2.01
1886 1941 3.756434 GCTCAAGGCACCAGTATTAAACA 59.244 43.478 0.00 0.00 41.35 2.83
1981 2036 7.270757 TGTTACAATTGCAACATTCAGTAGT 57.729 32.000 18.30 0.00 29.93 2.73
2044 2099 3.713764 AGTGGATCCTACTTCCAATCAGG 59.286 47.826 14.23 0.00 44.62 3.86
2085 2140 2.740447 CTCACCAAACTTTAGTACGGGC 59.260 50.000 0.00 0.00 0.00 6.13
2130 2185 4.214332 GCAGAAGATCAAAACGGTTTCTCT 59.786 41.667 6.57 6.97 0.00 3.10
2503 2586 6.422776 AAGGATTCGTACATTGTGCTTTAG 57.577 37.500 0.00 0.00 0.00 1.85
2587 2670 2.094803 TGGGTGTGCATAATTTGAAGCG 60.095 45.455 0.00 0.00 0.00 4.68
2607 2690 5.879237 AGCGTATTGGTGTATTTTCATGTG 58.121 37.500 0.00 0.00 0.00 3.21
2608 2691 5.414454 AGCGTATTGGTGTATTTTCATGTGT 59.586 36.000 0.00 0.00 0.00 3.72
2609 2692 6.072175 AGCGTATTGGTGTATTTTCATGTGTT 60.072 34.615 0.00 0.00 0.00 3.32
2610 2693 6.250527 GCGTATTGGTGTATTTTCATGTGTTC 59.749 38.462 0.00 0.00 0.00 3.18
2681 2768 3.500982 CCCAACAGCAAACATGTATTCG 58.499 45.455 0.00 0.00 0.00 3.34
2778 2865 4.894784 TGTCTCCAGATTCTTGGTTGTAC 58.105 43.478 0.00 0.00 39.35 2.90
2970 3067 6.096001 TGGCATTTTTAAAATTGGTTGTTGCT 59.904 30.769 19.25 0.00 0.00 3.91
2992 3090 5.812642 GCTGTCTTGCTGTATGTATTGTAGT 59.187 40.000 0.00 0.00 0.00 2.73
3016 3114 7.337689 AGTTGTGTATCATTGTCATGTGCTTAT 59.662 33.333 0.00 0.00 0.00 1.73
3017 3115 7.018635 TGTGTATCATTGTCATGTGCTTATG 57.981 36.000 0.00 0.00 0.00 1.90
3074 3172 4.758165 TGTCTCCCATTTTAACTTCGTTCC 59.242 41.667 0.00 0.00 0.00 3.62
3076 3174 3.075884 TCCCATTTTAACTTCGTTCCGG 58.924 45.455 0.00 0.00 0.00 5.14
3096 3194 3.924686 CGGCTACACGTCTATGAAAGTTT 59.075 43.478 0.00 0.00 0.00 2.66
3168 3266 4.726825 TCCTAAATAGAAGGGCAGACCATT 59.273 41.667 0.00 0.00 44.30 3.16
3272 3371 5.484173 TGATGGATTTGTGCGACTTATTC 57.516 39.130 0.00 0.00 0.00 1.75
3313 3412 4.100189 GGCCCCATAGCTACTAGTATCATG 59.900 50.000 2.33 7.19 0.00 3.07
3340 3439 4.963318 TTCATCCAGGATACCATGAGTC 57.037 45.455 0.00 0.00 31.41 3.36
3349 3448 2.034104 TACCATGAGTCGCTACGTCT 57.966 50.000 0.00 0.00 0.00 4.18
3552 3651 2.986728 AGAGGTTGCTTTCTCCCCTTTA 59.013 45.455 0.00 0.00 0.00 1.85
3964 4069 0.961753 CCACAGAGAAAAGCAACCCC 59.038 55.000 0.00 0.00 0.00 4.95
4155 4273 5.702670 CCGTGCTTATTCATGATATGGTTCT 59.297 40.000 0.00 0.00 0.00 3.01
4156 4274 6.347969 CCGTGCTTATTCATGATATGGTTCTG 60.348 42.308 0.00 0.00 0.00 3.02
4157 4275 6.203530 CGTGCTTATTCATGATATGGTTCTGT 59.796 38.462 0.00 0.00 0.00 3.41
4158 4276 7.358066 GTGCTTATTCATGATATGGTTCTGTG 58.642 38.462 0.00 0.00 0.00 3.66
4159 4277 6.487668 TGCTTATTCATGATATGGTTCTGTGG 59.512 38.462 0.00 0.00 0.00 4.17
4160 4278 6.712095 GCTTATTCATGATATGGTTCTGTGGA 59.288 38.462 0.00 0.00 0.00 4.02
4161 4279 7.094890 GCTTATTCATGATATGGTTCTGTGGAG 60.095 40.741 0.00 0.00 0.00 3.86
4162 4280 5.698741 TTCATGATATGGTTCTGTGGAGT 57.301 39.130 0.00 0.00 0.00 3.85
4163 4281 5.027293 TCATGATATGGTTCTGTGGAGTG 57.973 43.478 0.00 0.00 0.00 3.51
4177 4295 2.359107 AGTGTGGAGTGCATGCGG 60.359 61.111 14.09 0.00 0.00 5.69
4221 4339 2.162681 CCTGAAAGCGTGGGAAATCTT 58.837 47.619 0.00 0.00 0.00 2.40
4232 4350 2.373836 TGGGAAATCTTCTCGGTTCCAA 59.626 45.455 3.87 0.00 41.17 3.53
4233 4351 2.747989 GGGAAATCTTCTCGGTTCCAAC 59.252 50.000 3.87 0.00 41.17 3.77
4234 4352 3.559384 GGGAAATCTTCTCGGTTCCAACT 60.559 47.826 3.87 0.00 41.17 3.16
4235 4353 3.437049 GGAAATCTTCTCGGTTCCAACTG 59.563 47.826 0.00 0.00 39.51 3.16
4261 4379 3.243068 GGCATTCTGCGGTTATAACAAGG 60.243 47.826 17.16 5.59 46.21 3.61
4271 4389 3.066203 GGTTATAACAAGGCGTGGGATTG 59.934 47.826 17.16 0.00 0.00 2.67
4274 4392 0.467290 AACAAGGCGTGGGATTGTGT 60.467 50.000 5.22 0.00 37.24 3.72
4281 4399 0.321671 CGTGGGATTGTGTGGACTCT 59.678 55.000 0.00 0.00 0.00 3.24
4283 4401 1.347707 GTGGGATTGTGTGGACTCTGA 59.652 52.381 0.00 0.00 0.00 3.27
4284 4402 1.347707 TGGGATTGTGTGGACTCTGAC 59.652 52.381 0.00 0.00 0.00 3.51
4315 4457 8.930760 TCACCTGTTTGTTTTATTTTGTTTCTG 58.069 29.630 0.00 0.00 0.00 3.02
4341 4499 3.774216 CCAGGAAGTTCCTCTTGAGAGAT 59.226 47.826 22.09 0.00 45.66 2.75
4349 4507 4.199432 TCCTCTTGAGAGATCTGCAAAC 57.801 45.455 0.00 0.00 44.74 2.93
4370 4528 2.285756 CGAACACTCGTGGTTGCTTAAA 59.714 45.455 1.77 0.00 40.33 1.52
4399 4557 1.202463 GCGGTGCATCTACATGAGAGT 60.202 52.381 0.00 0.00 37.70 3.24
4419 4588 8.299570 TGAGAGTAGAAAAATCCAAAAATGAGC 58.700 33.333 0.00 0.00 0.00 4.26
4485 4654 5.631512 GCTTAGCTTTCTCACGGATATACAG 59.368 44.000 0.00 0.00 0.00 2.74
4486 4655 6.515200 GCTTAGCTTTCTCACGGATATACAGA 60.515 42.308 0.00 0.00 0.00 3.41
4525 5046 2.798145 CGCAACCAAAACAGAAAGGGTC 60.798 50.000 0.00 0.00 0.00 4.46
4529 5073 5.241662 CAACCAAAACAGAAAGGGTCAAAA 58.758 37.500 0.00 0.00 0.00 2.44
4541 5085 0.589223 GGTCAAAAACATCCGCGACA 59.411 50.000 8.23 0.00 0.00 4.35
4562 5106 2.434884 CCAACGCAGCGACCTCAT 60.435 61.111 24.65 0.00 0.00 2.90
4563 5107 2.034879 CCAACGCAGCGACCTCATT 61.035 57.895 24.65 0.00 0.00 2.57
4566 5110 1.016130 AACGCAGCGACCTCATTCTG 61.016 55.000 24.65 0.00 0.00 3.02
4567 5111 2.169789 CGCAGCGACCTCATTCTGG 61.170 63.158 9.98 0.00 0.00 3.86
4568 5112 1.078848 GCAGCGACCTCATTCTGGT 60.079 57.895 0.00 0.00 41.07 4.00
4569 5113 0.175760 GCAGCGACCTCATTCTGGTA 59.824 55.000 0.00 0.00 38.03 3.25
4570 5114 1.927895 CAGCGACCTCATTCTGGTAC 58.072 55.000 0.00 0.00 38.03 3.34
4571 5115 0.824759 AGCGACCTCATTCTGGTACC 59.175 55.000 4.43 4.43 38.03 3.34
4572 5116 0.535335 GCGACCTCATTCTGGTACCA 59.465 55.000 15.39 15.39 38.03 3.25
4573 5117 1.471676 GCGACCTCATTCTGGTACCAG 60.472 57.143 32.61 32.61 44.86 4.00
4574 5118 1.137086 CGACCTCATTCTGGTACCAGG 59.863 57.143 35.94 24.42 43.75 4.45
4575 5119 0.912486 ACCTCATTCTGGTACCAGGC 59.088 55.000 35.94 0.64 43.75 4.85
4577 5121 1.492176 CCTCATTCTGGTACCAGGCAT 59.508 52.381 35.94 26.07 43.75 4.40
4578 5122 2.092212 CCTCATTCTGGTACCAGGCATT 60.092 50.000 35.94 18.53 43.75 3.56
4579 5123 3.624777 CTCATTCTGGTACCAGGCATTT 58.375 45.455 35.94 16.94 43.75 2.32
4591 5227 4.265073 ACCAGGCATTTAGACATCTGAAC 58.735 43.478 0.00 0.00 0.00 3.18
4592 5228 4.018960 ACCAGGCATTTAGACATCTGAACT 60.019 41.667 0.00 0.00 0.00 3.01
4625 5264 9.961265 AAAGTTTGTTTAGGAAACTAGTATTGC 57.039 29.630 0.00 0.00 45.45 3.56
4626 5265 8.919777 AGTTTGTTTAGGAAACTAGTATTGCT 57.080 30.769 13.35 13.35 45.45 3.91
4627 5266 9.000486 AGTTTGTTTAGGAAACTAGTATTGCTC 58.000 33.333 12.57 3.76 45.45 4.26
4641 5280 8.148351 ACTAGTATTGCTCTCAGTGTACAAAAA 58.852 33.333 0.00 0.00 0.00 1.94
4676 5315 6.761714 GCTAAGCAATAGTTACCACATACTGT 59.238 38.462 0.00 0.00 33.87 3.55
4677 5316 7.280205 GCTAAGCAATAGTTACCACATACTGTT 59.720 37.037 0.00 0.00 33.87 3.16
4678 5317 7.996098 AAGCAATAGTTACCACATACTGTTT 57.004 32.000 0.00 0.00 0.00 2.83
4679 5318 7.996098 AGCAATAGTTACCACATACTGTTTT 57.004 32.000 0.00 0.00 0.00 2.43
4680 5319 8.404107 AGCAATAGTTACCACATACTGTTTTT 57.596 30.769 0.00 0.00 0.00 1.94
4714 5353 4.617253 AAGTTACCACATACTGCTGTCA 57.383 40.909 0.00 0.00 0.00 3.58
4715 5354 3.926616 AGTTACCACATACTGCTGTCAC 58.073 45.455 0.00 0.00 0.00 3.67
4716 5355 3.000727 GTTACCACATACTGCTGTCACC 58.999 50.000 0.00 0.00 0.00 4.02
4717 5356 1.352083 ACCACATACTGCTGTCACCT 58.648 50.000 0.00 0.00 0.00 4.00
4718 5357 1.002430 ACCACATACTGCTGTCACCTG 59.998 52.381 0.00 0.00 0.00 4.00
4719 5358 1.002430 CCACATACTGCTGTCACCTGT 59.998 52.381 0.00 0.00 0.00 4.00
4720 5359 2.341257 CACATACTGCTGTCACCTGTC 58.659 52.381 0.00 0.00 0.00 3.51
4721 5360 1.970640 ACATACTGCTGTCACCTGTCA 59.029 47.619 0.00 0.00 0.00 3.58
4722 5361 2.028658 ACATACTGCTGTCACCTGTCAG 60.029 50.000 0.00 0.00 34.96 3.51
4723 5362 0.969149 TACTGCTGTCACCTGTCAGG 59.031 55.000 17.88 17.88 42.49 3.86
4724 5363 1.670406 CTGCTGTCACCTGTCAGGC 60.670 63.158 19.40 4.20 39.63 4.85
4725 5364 2.387476 CTGCTGTCACCTGTCAGGCA 62.387 60.000 19.40 8.75 39.63 4.75
4726 5365 1.002868 GCTGTCACCTGTCAGGCAT 60.003 57.895 19.40 0.00 39.63 4.40
4727 5366 0.250234 GCTGTCACCTGTCAGGCATA 59.750 55.000 19.40 3.37 39.63 3.14
4728 5367 1.134280 GCTGTCACCTGTCAGGCATAT 60.134 52.381 19.40 0.00 39.63 1.78
4729 5368 2.558378 CTGTCACCTGTCAGGCATATG 58.442 52.381 19.40 9.70 39.63 1.78
4730 5369 1.210234 TGTCACCTGTCAGGCATATGG 59.790 52.381 19.40 2.22 39.63 2.74
4731 5370 0.839277 TCACCTGTCAGGCATATGGG 59.161 55.000 19.40 0.00 39.63 4.00
4732 5371 0.179009 CACCTGTCAGGCATATGGGG 60.179 60.000 19.40 0.00 39.63 4.96
4733 5372 0.327480 ACCTGTCAGGCATATGGGGA 60.327 55.000 19.40 0.00 39.63 4.81
4734 5373 1.070604 CCTGTCAGGCATATGGGGAT 58.929 55.000 5.79 0.00 0.00 3.85
4735 5374 1.271762 CCTGTCAGGCATATGGGGATG 60.272 57.143 5.79 0.00 0.00 3.51
4736 5375 1.701292 CTGTCAGGCATATGGGGATGA 59.299 52.381 4.56 0.00 0.00 2.92
4737 5376 2.307980 CTGTCAGGCATATGGGGATGAT 59.692 50.000 4.56 0.00 0.00 2.45
4738 5377 2.306805 TGTCAGGCATATGGGGATGATC 59.693 50.000 4.56 0.00 0.00 2.92
4739 5378 2.306805 GTCAGGCATATGGGGATGATCA 59.693 50.000 4.56 0.00 0.00 2.92
4740 5379 3.053842 GTCAGGCATATGGGGATGATCAT 60.054 47.826 8.25 8.25 0.00 2.45
4741 5380 4.164796 GTCAGGCATATGGGGATGATCATA 59.835 45.833 8.54 0.00 0.00 2.15
4742 5381 4.979690 TCAGGCATATGGGGATGATCATAT 59.020 41.667 8.54 0.82 37.13 1.78
4743 5382 5.072736 TCAGGCATATGGGGATGATCATATC 59.927 44.000 8.54 4.11 35.20 1.63
4744 5383 4.979690 AGGCATATGGGGATGATCATATCA 59.020 41.667 8.54 7.78 44.55 2.15
4745 5384 5.434044 AGGCATATGGGGATGATCATATCAA 59.566 40.000 8.54 0.00 43.50 2.57
4746 5385 5.533903 GGCATATGGGGATGATCATATCAAC 59.466 44.000 8.54 0.00 43.50 3.18
4747 5386 5.237996 GCATATGGGGATGATCATATCAACG 59.762 44.000 8.54 2.49 43.50 4.10
4748 5387 3.701205 TGGGGATGATCATATCAACGG 57.299 47.619 8.54 0.00 43.50 4.44
4749 5388 2.978978 TGGGGATGATCATATCAACGGT 59.021 45.455 8.54 0.00 43.50 4.83
4750 5389 3.394274 TGGGGATGATCATATCAACGGTT 59.606 43.478 8.54 0.00 43.50 4.44
4751 5390 3.753272 GGGGATGATCATATCAACGGTTG 59.247 47.826 14.62 14.62 43.50 3.77
4752 5391 4.504864 GGGGATGATCATATCAACGGTTGA 60.505 45.833 24.32 24.32 43.50 3.18
4753 5392 4.452455 GGGATGATCATATCAACGGTTGAC 59.548 45.833 24.56 11.99 43.48 3.18
4754 5393 4.452455 GGATGATCATATCAACGGTTGACC 59.548 45.833 24.56 14.19 43.48 4.02
4755 5394 3.804036 TGATCATATCAACGGTTGACCC 58.196 45.455 24.56 11.06 43.48 4.46
4756 5395 3.198853 TGATCATATCAACGGTTGACCCA 59.801 43.478 24.56 13.64 43.48 4.51
4757 5396 3.260475 TCATATCAACGGTTGACCCAG 57.740 47.619 24.56 14.82 43.48 4.45
4758 5397 2.569853 TCATATCAACGGTTGACCCAGT 59.430 45.455 24.56 11.80 43.48 4.00
4759 5398 3.008594 TCATATCAACGGTTGACCCAGTT 59.991 43.478 24.56 11.11 43.48 3.16
4760 5399 2.358322 ATCAACGGTTGACCCAGTTT 57.642 45.000 24.56 5.44 43.48 2.66
4761 5400 2.131776 TCAACGGTTGACCCAGTTTT 57.868 45.000 19.07 0.00 34.08 2.43
4762 5401 2.448453 TCAACGGTTGACCCAGTTTTT 58.552 42.857 19.07 0.00 34.08 1.94
4782 5421 3.423996 TTTTGTTTAACCGTGACTGCC 57.576 42.857 0.00 0.00 0.00 4.85
4783 5422 2.039818 TTGTTTAACCGTGACTGCCA 57.960 45.000 0.00 0.00 0.00 4.92
4784 5423 1.301423 TGTTTAACCGTGACTGCCAC 58.699 50.000 0.00 0.00 42.30 5.01
4785 5424 1.134340 TGTTTAACCGTGACTGCCACT 60.134 47.619 0.00 0.00 43.53 4.00
4786 5425 1.263217 GTTTAACCGTGACTGCCACTG 59.737 52.381 0.00 0.00 43.53 3.66
4787 5426 0.466543 TTAACCGTGACTGCCACTGT 59.533 50.000 0.00 0.00 43.62 3.55
4788 5427 1.223487 AACCGTGACTGCCACTGTT 59.777 52.632 0.00 0.00 44.69 3.16
4789 5428 1.095228 AACCGTGACTGCCACTGTTG 61.095 55.000 3.37 0.00 46.64 3.33
4790 5429 1.227527 CCGTGACTGCCACTGTTGA 60.228 57.895 0.00 0.00 43.53 3.18
4791 5430 0.603707 CCGTGACTGCCACTGTTGAT 60.604 55.000 0.00 0.00 43.53 2.57
4792 5431 0.792640 CGTGACTGCCACTGTTGATC 59.207 55.000 0.00 0.00 43.53 2.92
4793 5432 1.606480 CGTGACTGCCACTGTTGATCT 60.606 52.381 0.00 0.00 43.53 2.75
4794 5433 1.802960 GTGACTGCCACTGTTGATCTG 59.197 52.381 0.00 0.00 42.44 2.90
4795 5434 1.271001 TGACTGCCACTGTTGATCTGG 60.271 52.381 0.00 0.00 0.00 3.86
4796 5435 1.002430 GACTGCCACTGTTGATCTGGA 59.998 52.381 2.22 0.00 0.00 3.86
4797 5436 1.002888 ACTGCCACTGTTGATCTGGAG 59.997 52.381 2.22 0.57 0.00 3.86
4798 5437 1.277273 CTGCCACTGTTGATCTGGAGA 59.723 52.381 2.22 0.00 0.00 3.71
4799 5438 1.699083 TGCCACTGTTGATCTGGAGAA 59.301 47.619 2.22 0.00 0.00 2.87
4800 5439 2.306805 TGCCACTGTTGATCTGGAGAAT 59.693 45.455 2.22 0.00 0.00 2.40
4801 5440 2.941720 GCCACTGTTGATCTGGAGAATC 59.058 50.000 2.22 0.00 0.00 2.52
4802 5441 3.620719 GCCACTGTTGATCTGGAGAATCA 60.621 47.826 2.22 0.00 36.25 2.57
4803 5442 4.778579 CCACTGTTGATCTGGAGAATCAT 58.221 43.478 0.00 0.00 36.25 2.45
4804 5443 5.685861 GCCACTGTTGATCTGGAGAATCATA 60.686 44.000 2.22 0.00 36.25 2.15
4805 5444 5.757320 CCACTGTTGATCTGGAGAATCATAC 59.243 44.000 0.00 0.00 36.25 2.39
4806 5445 6.407865 CCACTGTTGATCTGGAGAATCATACT 60.408 42.308 0.00 0.00 36.25 2.12
4807 5446 6.479331 CACTGTTGATCTGGAGAATCATACTG 59.521 42.308 0.00 0.00 36.25 2.74
4808 5447 6.382282 ACTGTTGATCTGGAGAATCATACTGA 59.618 38.462 0.00 0.00 36.25 3.41
4809 5448 7.093156 ACTGTTGATCTGGAGAATCATACTGAA 60.093 37.037 0.00 0.00 36.25 3.02
4810 5449 7.799081 TGTTGATCTGGAGAATCATACTGAAT 58.201 34.615 0.00 0.00 36.25 2.57
4811 5450 8.270030 TGTTGATCTGGAGAATCATACTGAATT 58.730 33.333 0.00 0.00 36.25 2.17
4812 5451 8.772705 GTTGATCTGGAGAATCATACTGAATTC 58.227 37.037 0.00 0.00 36.25 2.17
4813 5452 8.026396 TGATCTGGAGAATCATACTGAATTCA 57.974 34.615 8.12 8.12 36.25 2.57
4814 5453 8.488668 TGATCTGGAGAATCATACTGAATTCAA 58.511 33.333 9.88 0.00 36.25 2.69
4815 5454 8.905660 ATCTGGAGAATCATACTGAATTCAAG 57.094 34.615 9.88 6.49 36.25 3.02
4816 5455 7.278135 TCTGGAGAATCATACTGAATTCAAGG 58.722 38.462 9.88 1.20 36.25 3.61
4817 5456 7.126268 TCTGGAGAATCATACTGAATTCAAGGA 59.874 37.037 9.88 3.24 36.25 3.36
4818 5457 7.278135 TGGAGAATCATACTGAATTCAAGGAG 58.722 38.462 9.88 0.06 36.25 3.69
4819 5458 6.709846 GGAGAATCATACTGAATTCAAGGAGG 59.290 42.308 9.88 2.84 36.25 4.30
4820 5459 7.205515 AGAATCATACTGAATTCAAGGAGGT 57.794 36.000 9.88 6.09 0.00 3.85
4821 5460 7.052873 AGAATCATACTGAATTCAAGGAGGTG 58.947 38.462 9.88 0.00 0.00 4.00
4822 5461 5.762179 TCATACTGAATTCAAGGAGGTGT 57.238 39.130 9.88 4.66 0.00 4.16
4823 5462 6.126863 TCATACTGAATTCAAGGAGGTGTT 57.873 37.500 9.88 0.00 0.00 3.32
4824 5463 6.542821 TCATACTGAATTCAAGGAGGTGTTT 58.457 36.000 9.88 0.00 0.00 2.83
4825 5464 6.655003 TCATACTGAATTCAAGGAGGTGTTTC 59.345 38.462 9.88 0.00 0.00 2.78
4826 5465 3.815401 ACTGAATTCAAGGAGGTGTTTCG 59.185 43.478 9.88 0.00 0.00 3.46
4827 5466 4.065088 CTGAATTCAAGGAGGTGTTTCGA 58.935 43.478 9.88 0.00 0.00 3.71
4828 5467 3.813166 TGAATTCAAGGAGGTGTTTCGAC 59.187 43.478 5.45 0.00 0.00 4.20
4829 5468 3.771577 ATTCAAGGAGGTGTTTCGACT 57.228 42.857 0.00 0.00 0.00 4.18
4830 5469 2.526304 TCAAGGAGGTGTTTCGACTG 57.474 50.000 0.00 0.00 0.00 3.51
4831 5470 0.868406 CAAGGAGGTGTTTCGACTGC 59.132 55.000 0.00 0.00 0.00 4.40
4832 5471 0.759346 AAGGAGGTGTTTCGACTGCT 59.241 50.000 0.00 0.00 34.20 4.24
4833 5472 0.759346 AGGAGGTGTTTCGACTGCTT 59.241 50.000 0.00 0.00 27.79 3.91
4834 5473 1.141053 AGGAGGTGTTTCGACTGCTTT 59.859 47.619 0.00 0.00 27.79 3.51
4835 5474 1.531578 GGAGGTGTTTCGACTGCTTTC 59.468 52.381 0.00 0.00 0.00 2.62
4836 5475 2.484889 GAGGTGTTTCGACTGCTTTCT 58.515 47.619 0.00 0.00 0.00 2.52
4837 5476 3.554337 GGAGGTGTTTCGACTGCTTTCTA 60.554 47.826 0.00 0.00 0.00 2.10
4838 5477 4.056050 GAGGTGTTTCGACTGCTTTCTAA 58.944 43.478 0.00 0.00 0.00 2.10
4839 5478 4.448210 AGGTGTTTCGACTGCTTTCTAAA 58.552 39.130 0.00 0.00 0.00 1.85
4840 5479 5.063880 AGGTGTTTCGACTGCTTTCTAAAT 58.936 37.500 0.00 0.00 0.00 1.40
4841 5480 5.531287 AGGTGTTTCGACTGCTTTCTAAATT 59.469 36.000 0.00 0.00 0.00 1.82
4842 5481 6.708949 AGGTGTTTCGACTGCTTTCTAAATTA 59.291 34.615 0.00 0.00 0.00 1.40
4843 5482 6.795593 GGTGTTTCGACTGCTTTCTAAATTAC 59.204 38.462 0.00 0.00 0.00 1.89
4844 5483 7.307811 GGTGTTTCGACTGCTTTCTAAATTACT 60.308 37.037 0.00 0.00 0.00 2.24
4845 5484 8.706035 GTGTTTCGACTGCTTTCTAAATTACTA 58.294 33.333 0.00 0.00 0.00 1.82
4846 5485 9.263538 TGTTTCGACTGCTTTCTAAATTACTAA 57.736 29.630 0.00 0.00 0.00 2.24
4847 5486 9.526286 GTTTCGACTGCTTTCTAAATTACTAAC 57.474 33.333 0.00 0.00 0.00 2.34
4848 5487 7.823149 TCGACTGCTTTCTAAATTACTAACC 57.177 36.000 0.00 0.00 0.00 2.85
4849 5488 6.529125 TCGACTGCTTTCTAAATTACTAACCG 59.471 38.462 0.00 0.00 0.00 4.44
4850 5489 6.529125 CGACTGCTTTCTAAATTACTAACCGA 59.471 38.462 0.00 0.00 0.00 4.69
4851 5490 7.462462 CGACTGCTTTCTAAATTACTAACCGAC 60.462 40.741 0.00 0.00 0.00 4.79
4852 5491 7.384477 ACTGCTTTCTAAATTACTAACCGACT 58.616 34.615 0.00 0.00 0.00 4.18
4853 5492 7.876582 ACTGCTTTCTAAATTACTAACCGACTT 59.123 33.333 0.00 0.00 0.00 3.01
4854 5493 8.611654 TGCTTTCTAAATTACTAACCGACTTT 57.388 30.769 0.00 0.00 0.00 2.66
4855 5494 9.709495 TGCTTTCTAAATTACTAACCGACTTTA 57.291 29.630 0.00 0.00 0.00 1.85
4856 5495 9.964253 GCTTTCTAAATTACTAACCGACTTTAC 57.036 33.333 0.00 0.00 0.00 2.01
4860 5499 9.630098 TCTAAATTACTAACCGACTTTACACTG 57.370 33.333 0.00 0.00 0.00 3.66
4861 5500 9.630098 CTAAATTACTAACCGACTTTACACTGA 57.370 33.333 0.00 0.00 0.00 3.41
4862 5501 7.880059 AATTACTAACCGACTTTACACTGAC 57.120 36.000 0.00 0.00 0.00 3.51
4863 5502 4.924305 ACTAACCGACTTTACACTGACA 57.076 40.909 0.00 0.00 0.00 3.58
4864 5503 5.464030 ACTAACCGACTTTACACTGACAT 57.536 39.130 0.00 0.00 0.00 3.06
4865 5504 5.850614 ACTAACCGACTTTACACTGACATT 58.149 37.500 0.00 0.00 0.00 2.71
4866 5505 6.985117 ACTAACCGACTTTACACTGACATTA 58.015 36.000 0.00 0.00 0.00 1.90
4867 5506 7.436118 ACTAACCGACTTTACACTGACATTAA 58.564 34.615 0.00 0.00 0.00 1.40
4868 5507 7.927629 ACTAACCGACTTTACACTGACATTAAA 59.072 33.333 0.00 0.00 0.00 1.52
4869 5508 6.780706 ACCGACTTTACACTGACATTAAAG 57.219 37.500 8.67 8.67 38.33 1.85
4870 5509 5.178809 ACCGACTTTACACTGACATTAAAGC 59.821 40.000 9.61 0.00 36.62 3.51
4871 5510 5.178623 CCGACTTTACACTGACATTAAAGCA 59.821 40.000 9.61 0.00 36.62 3.91
4872 5511 6.071463 CGACTTTACACTGACATTAAAGCAC 58.929 40.000 9.61 5.77 36.62 4.40
4873 5512 6.313744 ACTTTACACTGACATTAAAGCACC 57.686 37.500 9.61 0.00 36.62 5.01
4874 5513 6.062095 ACTTTACACTGACATTAAAGCACCT 58.938 36.000 9.61 0.00 36.62 4.00
4875 5514 7.221450 ACTTTACACTGACATTAAAGCACCTA 58.779 34.615 9.61 0.00 36.62 3.08
4876 5515 7.172703 ACTTTACACTGACATTAAAGCACCTAC 59.827 37.037 9.61 0.00 36.62 3.18
4877 5516 5.228945 ACACTGACATTAAAGCACCTACT 57.771 39.130 0.00 0.00 0.00 2.57
4878 5517 5.238583 ACACTGACATTAAAGCACCTACTC 58.761 41.667 0.00 0.00 0.00 2.59
4879 5518 5.012148 ACACTGACATTAAAGCACCTACTCT 59.988 40.000 0.00 0.00 0.00 3.24
4880 5519 5.349817 CACTGACATTAAAGCACCTACTCTG 59.650 44.000 0.00 0.00 0.00 3.35
4881 5520 4.253685 TGACATTAAAGCACCTACTCTGC 58.746 43.478 0.00 0.00 34.63 4.26
4882 5521 4.253685 GACATTAAAGCACCTACTCTGCA 58.746 43.478 0.00 0.00 37.08 4.41
4883 5522 4.848357 ACATTAAAGCACCTACTCTGCAT 58.152 39.130 0.00 0.00 37.08 3.96
4884 5523 4.637534 ACATTAAAGCACCTACTCTGCATG 59.362 41.667 0.00 0.00 37.08 4.06
4885 5524 2.119801 AAAGCACCTACTCTGCATGG 57.880 50.000 0.00 0.00 37.08 3.66
4886 5525 1.279496 AAGCACCTACTCTGCATGGA 58.721 50.000 0.00 0.00 37.08 3.41
4887 5526 0.829333 AGCACCTACTCTGCATGGAG 59.171 55.000 8.12 8.12 37.08 3.86
4888 5527 0.179062 GCACCTACTCTGCATGGAGG 60.179 60.000 14.84 14.55 37.63 4.30
4889 5528 1.198713 CACCTACTCTGCATGGAGGT 58.801 55.000 14.84 15.70 41.28 3.85
4890 5529 1.137872 CACCTACTCTGCATGGAGGTC 59.862 57.143 17.89 0.00 38.49 3.85
4891 5530 0.755686 CCTACTCTGCATGGAGGTCC 59.244 60.000 14.84 0.00 37.63 4.46
4905 5544 2.350863 AGGTCCATCCTCCAGTTTCT 57.649 50.000 0.00 0.00 44.42 2.52
4906 5545 1.912043 AGGTCCATCCTCCAGTTTCTG 59.088 52.381 0.00 0.00 44.42 3.02
4907 5546 1.909302 GGTCCATCCTCCAGTTTCTGA 59.091 52.381 0.00 0.00 32.44 3.27
4908 5547 2.507471 GGTCCATCCTCCAGTTTCTGAT 59.493 50.000 0.00 0.00 32.44 2.90
4909 5548 3.539604 GTCCATCCTCCAGTTTCTGATG 58.460 50.000 0.00 0.00 32.44 3.07
4910 5549 3.198635 GTCCATCCTCCAGTTTCTGATGA 59.801 47.826 0.00 0.00 35.89 2.92
4911 5550 3.453717 TCCATCCTCCAGTTTCTGATGAG 59.546 47.826 0.00 0.00 35.89 2.90
4912 5551 3.199508 CCATCCTCCAGTTTCTGATGAGT 59.800 47.826 0.00 0.00 35.89 3.41
4913 5552 4.406972 CCATCCTCCAGTTTCTGATGAGTA 59.593 45.833 0.00 0.00 35.89 2.59
4914 5553 5.453057 CCATCCTCCAGTTTCTGATGAGTAG 60.453 48.000 0.00 0.00 35.89 2.57
4915 5554 4.935578 TCCTCCAGTTTCTGATGAGTAGA 58.064 43.478 0.00 0.00 32.44 2.59
4916 5555 5.523588 TCCTCCAGTTTCTGATGAGTAGAT 58.476 41.667 0.00 0.00 32.44 1.98
4917 5556 5.596361 TCCTCCAGTTTCTGATGAGTAGATC 59.404 44.000 0.00 0.00 32.44 2.75
4918 5557 5.362143 CCTCCAGTTTCTGATGAGTAGATCA 59.638 44.000 0.00 0.00 43.70 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 7.119553 ACGTAACAGTAAAACAACAGAAAAGGA 59.880 33.333 0.00 0.00 0.00 3.36
49 51 8.663771 AACGTAACAGTAAAACAACAGAAAAG 57.336 30.769 0.00 0.00 0.00 2.27
51 53 7.060864 GCAAACGTAACAGTAAAACAACAGAAA 59.939 33.333 0.00 0.00 0.00 2.52
62 64 1.794116 GAGCGGCAAACGTAACAGTAA 59.206 47.619 1.45 0.00 46.52 2.24
64 66 0.531090 TGAGCGGCAAACGTAACAGT 60.531 50.000 1.45 0.00 46.52 3.55
65 67 0.796312 ATGAGCGGCAAACGTAACAG 59.204 50.000 1.45 0.00 46.52 3.16
66 68 0.515127 CATGAGCGGCAAACGTAACA 59.485 50.000 1.45 0.00 46.52 2.41
101 118 9.005180 CGCTAAATCAGTAAATTCGCAAAAATA 57.995 29.630 0.00 0.00 0.00 1.40
102 119 7.009174 CCGCTAAATCAGTAAATTCGCAAAAAT 59.991 33.333 0.00 0.00 0.00 1.82
103 120 6.306837 CCGCTAAATCAGTAAATTCGCAAAAA 59.693 34.615 0.00 0.00 0.00 1.94
104 121 5.797934 CCGCTAAATCAGTAAATTCGCAAAA 59.202 36.000 0.00 0.00 0.00 2.44
105 122 5.328691 CCGCTAAATCAGTAAATTCGCAAA 58.671 37.500 0.00 0.00 0.00 3.68
106 123 4.729458 GCCGCTAAATCAGTAAATTCGCAA 60.729 41.667 0.00 0.00 0.00 4.85
107 124 3.242608 GCCGCTAAATCAGTAAATTCGCA 60.243 43.478 0.00 0.00 0.00 5.10
108 125 3.289076 GCCGCTAAATCAGTAAATTCGC 58.711 45.455 0.00 0.00 0.00 4.70
109 126 3.244345 TCGCCGCTAAATCAGTAAATTCG 59.756 43.478 0.00 0.00 0.00 3.34
145 173 1.138671 CGCATTGGCCCTTTTACGG 59.861 57.895 0.00 0.00 36.38 4.02
146 174 1.088306 TACGCATTGGCCCTTTTACG 58.912 50.000 0.00 0.00 36.38 3.18
147 175 1.202098 CGTACGCATTGGCCCTTTTAC 60.202 52.381 0.52 0.00 36.38 2.01
148 176 1.088306 CGTACGCATTGGCCCTTTTA 58.912 50.000 0.52 0.00 36.38 1.52
149 177 0.606944 TCGTACGCATTGGCCCTTTT 60.607 50.000 11.24 0.00 36.38 2.27
150 178 1.003112 TCGTACGCATTGGCCCTTT 60.003 52.632 11.24 0.00 36.38 3.11
151 179 1.743995 GTCGTACGCATTGGCCCTT 60.744 57.895 11.24 0.00 36.38 3.95
152 180 2.125269 GTCGTACGCATTGGCCCT 60.125 61.111 11.24 0.00 36.38 5.19
153 181 2.125269 AGTCGTACGCATTGGCCC 60.125 61.111 11.24 0.00 36.38 5.80
154 182 1.017177 TTCAGTCGTACGCATTGGCC 61.017 55.000 11.24 0.00 36.38 5.36
193 221 1.714899 CGCCAAATTCACCGGCTAGG 61.715 60.000 0.00 0.00 43.95 3.02
228 257 0.529378 CACAAAAGCTGCATCTCCCC 59.471 55.000 1.02 0.00 0.00 4.81
252 281 1.747355 GAGCTACTACTACAACCGCCA 59.253 52.381 0.00 0.00 0.00 5.69
262 291 6.432783 CAGATATAACTGCCTGAGCTACTACT 59.567 42.308 0.00 0.00 40.80 2.57
300 329 0.529337 TTGCACACAAAATGGCGTGG 60.529 50.000 0.00 0.00 37.45 4.94
368 397 6.551601 TCCAAATTTACACAAGGCCTAAAAGA 59.448 34.615 5.16 0.00 0.00 2.52
489 520 6.775594 ACTGTTAGGCTTCAAAAAGTTTCT 57.224 33.333 0.00 0.00 34.79 2.52
490 521 6.631636 CGTACTGTTAGGCTTCAAAAAGTTTC 59.368 38.462 0.00 0.00 34.79 2.78
501 532 6.592994 GTCCTTTAAATCGTACTGTTAGGCTT 59.407 38.462 0.00 0.00 0.00 4.35
506 537 6.071952 AGTCGGTCCTTTAAATCGTACTGTTA 60.072 38.462 0.00 0.00 0.00 2.41
510 542 5.649831 ACTAGTCGGTCCTTTAAATCGTACT 59.350 40.000 0.00 0.00 0.00 2.73
522 554 1.053424 TTGCCAAACTAGTCGGTCCT 58.947 50.000 11.79 0.00 0.00 3.85
598 650 8.746530 ACGAAATGTGAACTCTAATCTAGGTAA 58.253 33.333 0.00 0.00 0.00 2.85
606 658 6.428159 AGAGCAAACGAAATGTGAACTCTAAT 59.572 34.615 0.00 0.00 34.02 1.73
638 690 4.336713 GGTCTGGCTCCAATTATTTGAGTC 59.663 45.833 4.00 4.00 34.60 3.36
685 737 5.221880 TCATGCTTATCAAAAACAGCACAC 58.778 37.500 0.00 0.00 44.82 3.82
794 846 9.813080 CTAATCTGCAAAACTGTTTAGTTACTC 57.187 33.333 6.16 0.00 46.14 2.59
799 851 6.633500 TGCTAATCTGCAAAACTGTTTAGT 57.367 33.333 6.16 0.00 40.29 2.24
932 985 1.047801 CCCAAACCCTGAAAAGGTGG 58.952 55.000 0.00 0.00 37.78 4.61
1053 1107 8.337532 GGATTTAATGCAGTGATTTTATTTGGC 58.662 33.333 0.00 0.00 0.00 4.52
1356 1410 4.270008 GGCTAGCTTTTGTCCCATAGAAA 58.730 43.478 15.72 0.00 0.00 2.52
1468 1522 4.524714 TGAACCAACAGTTGAAAAGGTTGA 59.475 37.500 15.36 1.29 41.96 3.18
1569 1623 3.555966 AGCAAAACTGTCAGTAAAGCCT 58.444 40.909 5.77 0.00 0.00 4.58
1626 1680 4.141321 TGAGACGCTAAATACTCTAGGGGA 60.141 45.833 0.00 0.00 34.51 4.81
1679 1733 2.880890 CCATTTGCATAGTACAGCTCCC 59.119 50.000 0.00 0.00 0.00 4.30
1785 1840 2.093500 AGCAATGCTCTGATTGGACGTA 60.093 45.455 0.00 0.00 30.62 3.57
1948 2003 6.148948 TGTTGCAATTGTAACATAACTGCTC 58.851 36.000 30.55 8.24 43.77 4.26
2044 2099 1.405933 GCTGGGGGTCAAATTCATTGC 60.406 52.381 0.00 0.00 38.98 3.56
2085 2140 2.747855 GGCAGGGCAGGAAAGTCG 60.748 66.667 0.00 0.00 0.00 4.18
2130 2185 5.667626 GCCAAGGATATCCATATCTCCCTTA 59.332 44.000 23.81 0.00 39.24 2.69
2337 2392 5.699458 ACTAACACTTTGATACTTGTTCCCG 59.301 40.000 0.00 0.00 34.15 5.14
2480 2563 6.170506 TCTAAAGCACAATGTACGAATCCTT 58.829 36.000 0.00 0.00 0.00 3.36
2487 2570 7.125755 CCATACATTCTAAAGCACAATGTACG 58.874 38.462 6.00 0.00 42.78 3.67
2503 2586 5.652014 TCATTCTGGTTCAACCCATACATTC 59.348 40.000 3.42 0.00 37.50 2.67
2587 2670 7.826690 AGGAACACATGAAAATACACCAATAC 58.173 34.615 0.00 0.00 0.00 1.89
2633 2720 5.645929 ACGTACAAACATAAATCCATCAGCA 59.354 36.000 0.00 0.00 0.00 4.41
2634 2721 5.965334 CACGTACAAACATAAATCCATCAGC 59.035 40.000 0.00 0.00 0.00 4.26
2648 2735 0.309612 CTGTTGGGCCACGTACAAAC 59.690 55.000 5.23 0.00 0.00 2.93
2681 2768 2.232756 GAGCTTCTTCCCTCGATTCC 57.767 55.000 0.00 0.00 0.00 3.01
2970 3067 7.117667 CACAACTACAATACATACAGCAAGACA 59.882 37.037 0.00 0.00 0.00 3.41
2992 3090 5.963176 AAGCACATGACAATGATACACAA 57.037 34.783 0.00 0.00 37.24 3.33
3074 3172 3.146618 ACTTTCATAGACGTGTAGCCG 57.853 47.619 0.00 0.00 0.00 5.52
3076 3174 7.988904 AGATAAACTTTCATAGACGTGTAGC 57.011 36.000 0.00 0.00 0.00 3.58
3126 3224 4.464947 AGGAAGGAAAGGAACAAGACAAG 58.535 43.478 0.00 0.00 0.00 3.16
3179 3278 5.859205 AAAACATGAATATTCTCTGCCCC 57.141 39.130 16.24 0.00 0.00 5.80
3210 3309 6.992063 AACTTGCATATGAGTAGTGGAAAG 57.008 37.500 6.97 0.00 0.00 2.62
3272 3371 1.752084 GCCAGATTTGCCCTTCCCTAG 60.752 57.143 0.00 0.00 0.00 3.02
3313 3412 7.721399 ACTCATGGTATCCTGGATGAAATTTAC 59.279 37.037 19.42 7.16 0.00 2.01
3332 3431 1.550065 CAAGACGTAGCGACTCATGG 58.450 55.000 0.00 0.00 30.15 3.66
3340 3439 3.551890 AGTCAAATATGCAAGACGTAGCG 59.448 43.478 0.00 0.00 36.18 4.26
3552 3651 4.799678 CAGCGTATACATAGCTAGCTTGT 58.200 43.478 24.88 25.23 39.48 3.16
3622 3727 5.523552 GGTTCCTGGACAATGAAACAAAAAG 59.476 40.000 0.00 0.00 0.00 2.27
3652 3757 2.597510 ACTCCCCCGTTGCAAAGC 60.598 61.111 0.00 0.00 0.00 3.51
4006 4113 3.222603 CCAAGAACTTACAACAGCCCTT 58.777 45.455 0.00 0.00 0.00 3.95
4007 4114 2.174854 ACCAAGAACTTACAACAGCCCT 59.825 45.455 0.00 0.00 0.00 5.19
4008 4115 2.583143 ACCAAGAACTTACAACAGCCC 58.417 47.619 0.00 0.00 0.00 5.19
4010 4117 5.296035 ACAACTACCAAGAACTTACAACAGC 59.704 40.000 0.00 0.00 0.00 4.40
4011 4118 6.920569 ACAACTACCAAGAACTTACAACAG 57.079 37.500 0.00 0.00 0.00 3.16
4116 4234 2.124151 CGGCAGAAGGGGAATGGG 60.124 66.667 0.00 0.00 0.00 4.00
4155 4273 0.250424 CATGCACTCCACACTCCACA 60.250 55.000 0.00 0.00 0.00 4.17
4156 4274 1.580845 GCATGCACTCCACACTCCAC 61.581 60.000 14.21 0.00 0.00 4.02
4157 4275 1.302752 GCATGCACTCCACACTCCA 60.303 57.895 14.21 0.00 0.00 3.86
4158 4276 2.393768 CGCATGCACTCCACACTCC 61.394 63.158 19.57 0.00 0.00 3.85
4159 4277 2.393768 CCGCATGCACTCCACACTC 61.394 63.158 19.57 0.00 0.00 3.51
4160 4278 2.359107 CCGCATGCACTCCACACT 60.359 61.111 19.57 0.00 0.00 3.55
4161 4279 3.434319 CCCGCATGCACTCCACAC 61.434 66.667 19.57 0.00 0.00 3.82
4162 4280 2.970379 ATCCCGCATGCACTCCACA 61.970 57.895 19.57 0.00 0.00 4.17
4163 4281 2.124570 ATCCCGCATGCACTCCAC 60.125 61.111 19.57 0.00 0.00 4.02
4177 4295 2.203070 ATTCGCCGCAGTCCATCC 60.203 61.111 0.00 0.00 0.00 3.51
4261 4379 1.298859 GAGTCCACACAATCCCACGC 61.299 60.000 0.00 0.00 0.00 5.34
4271 4389 1.140816 GAAAGCGTCAGAGTCCACAC 58.859 55.000 0.00 0.00 0.00 3.82
4274 4392 0.033504 GGTGAAAGCGTCAGAGTCCA 59.966 55.000 0.00 0.00 36.74 4.02
4281 4399 1.745232 ACAAACAGGTGAAAGCGTCA 58.255 45.000 0.00 0.00 40.95 4.35
4283 4401 3.586100 AAAACAAACAGGTGAAAGCGT 57.414 38.095 0.00 0.00 40.95 5.07
4284 4402 6.582437 AAATAAAACAAACAGGTGAAAGCG 57.418 33.333 0.00 0.00 40.95 4.68
4349 4507 6.247124 TGTTTAAGCAACCACGAGTGTTCG 62.247 45.833 2.36 0.00 42.64 3.95
4399 4557 6.582677 TCCGCTCATTTTTGGATTTTTCTA 57.417 33.333 0.00 0.00 0.00 2.10
4415 4584 6.534475 TTACTAGGTTCTTAATTCCGCTCA 57.466 37.500 0.00 0.00 0.00 4.26
4448 4617 8.742777 TGAGAAAGCTAAGCATGATAAATGTTT 58.257 29.630 0.00 0.00 0.00 2.83
4485 4654 6.364976 GGTTGCGCCCATACATAAATTATTTC 59.635 38.462 4.18 0.00 0.00 2.17
4486 4655 6.183360 TGGTTGCGCCCATACATAAATTATTT 60.183 34.615 4.18 0.00 36.04 1.40
4501 5022 0.179097 TTTCTGTTTTGGTTGCGCCC 60.179 50.000 4.18 0.00 36.04 6.13
4502 5023 1.208259 CTTTCTGTTTTGGTTGCGCC 58.792 50.000 4.18 0.00 37.90 6.53
4505 5026 2.167487 TGACCCTTTCTGTTTTGGTTGC 59.833 45.455 0.00 0.00 0.00 4.17
4525 5046 1.451651 GCTTTGTCGCGGATGTTTTTG 59.548 47.619 6.13 0.00 0.00 2.44
4529 5073 1.169661 TTGGCTTTGTCGCGGATGTT 61.170 50.000 6.13 0.00 0.00 2.71
4541 5085 3.660111 GGTCGCTGCGTTGGCTTT 61.660 61.111 22.48 0.00 40.82 3.51
4562 5106 3.585289 TGTCTAAATGCCTGGTACCAGAA 59.415 43.478 38.35 26.96 46.30 3.02
4563 5107 3.178046 TGTCTAAATGCCTGGTACCAGA 58.822 45.455 38.35 22.87 46.30 3.86
4566 5110 4.130118 CAGATGTCTAAATGCCTGGTACC 58.870 47.826 4.43 4.43 0.00 3.34
4567 5111 5.023533 TCAGATGTCTAAATGCCTGGTAC 57.976 43.478 0.00 0.00 0.00 3.34
4568 5112 5.189736 AGTTCAGATGTCTAAATGCCTGGTA 59.810 40.000 0.00 0.00 0.00 3.25
4569 5113 4.018960 AGTTCAGATGTCTAAATGCCTGGT 60.019 41.667 0.00 0.00 0.00 4.00
4570 5114 4.521146 AGTTCAGATGTCTAAATGCCTGG 58.479 43.478 0.00 0.00 0.00 4.45
4571 5115 5.426504 AGAGTTCAGATGTCTAAATGCCTG 58.573 41.667 0.00 0.00 0.00 4.85
4572 5116 5.690464 AGAGTTCAGATGTCTAAATGCCT 57.310 39.130 0.00 0.00 0.00 4.75
4573 5117 6.150140 ACAAAGAGTTCAGATGTCTAAATGCC 59.850 38.462 0.00 0.00 0.00 4.40
4574 5118 7.138692 ACAAAGAGTTCAGATGTCTAAATGC 57.861 36.000 0.00 0.00 0.00 3.56
4577 5121 9.832445 ACTTTACAAAGAGTTCAGATGTCTAAA 57.168 29.630 8.65 0.00 39.31 1.85
4578 5122 9.832445 AACTTTACAAAGAGTTCAGATGTCTAA 57.168 29.630 8.65 0.00 39.31 2.10
4579 5123 9.832445 AAACTTTACAAAGAGTTCAGATGTCTA 57.168 29.630 8.65 0.00 39.31 2.59
4618 5257 7.094634 CCATTTTTGTACACTGAGAGCAATACT 60.095 37.037 0.00 0.00 0.00 2.12
4619 5258 7.023575 CCATTTTTGTACACTGAGAGCAATAC 58.976 38.462 0.00 0.00 0.00 1.89
4621 5260 5.769662 TCCATTTTTGTACACTGAGAGCAAT 59.230 36.000 0.00 0.00 0.00 3.56
4622 5261 5.129634 TCCATTTTTGTACACTGAGAGCAA 58.870 37.500 0.00 0.00 0.00 3.91
4623 5262 4.713553 TCCATTTTTGTACACTGAGAGCA 58.286 39.130 0.00 0.00 0.00 4.26
4624 5263 5.452777 GTTCCATTTTTGTACACTGAGAGC 58.547 41.667 0.00 0.00 0.00 4.09
4625 5264 5.530915 TGGTTCCATTTTTGTACACTGAGAG 59.469 40.000 0.00 0.00 0.00 3.20
4626 5265 5.441500 TGGTTCCATTTTTGTACACTGAGA 58.558 37.500 0.00 0.00 0.00 3.27
4627 5266 5.766150 TGGTTCCATTTTTGTACACTGAG 57.234 39.130 0.00 0.00 0.00 3.35
4641 5280 4.796606 ACTATTGCTTAGCATGGTTCCAT 58.203 39.130 8.05 0.00 38.76 3.41
4686 5325 6.943209 GCAGTATGTGGTAACTTACCCGCA 62.943 50.000 14.38 13.13 42.29 5.69
4687 5326 4.532268 GCAGTATGTGGTAACTTACCCGC 61.532 52.174 14.38 8.58 42.29 6.13
4688 5327 3.118884 AGCAGTATGTGGTAACTTACCCG 60.119 47.826 14.38 0.00 42.29 5.28
4689 5328 4.189231 CAGCAGTATGTGGTAACTTACCC 58.811 47.826 14.38 7.33 42.29 3.69
4690 5329 4.828829 ACAGCAGTATGTGGTAACTTACC 58.171 43.478 10.68 10.68 42.94 2.85
4691 5330 5.347907 GTGACAGCAGTATGTGGTAACTTAC 59.652 44.000 0.00 0.00 39.31 2.34
4692 5331 5.475719 GTGACAGCAGTATGTGGTAACTTA 58.524 41.667 0.00 0.00 39.31 2.24
4693 5332 4.315803 GTGACAGCAGTATGTGGTAACTT 58.684 43.478 0.00 0.00 39.31 2.66
4694 5333 3.306780 GGTGACAGCAGTATGTGGTAACT 60.307 47.826 0.00 0.00 39.31 2.24
4695 5334 3.000727 GGTGACAGCAGTATGTGGTAAC 58.999 50.000 0.00 0.00 39.31 2.50
4696 5335 2.903784 AGGTGACAGCAGTATGTGGTAA 59.096 45.455 7.50 0.00 39.31 2.85
4697 5336 2.233676 CAGGTGACAGCAGTATGTGGTA 59.766 50.000 7.50 0.00 39.31 3.25
4698 5337 1.002430 CAGGTGACAGCAGTATGTGGT 59.998 52.381 7.50 0.00 39.31 4.16
4699 5338 1.002430 ACAGGTGACAGCAGTATGTGG 59.998 52.381 7.50 0.00 39.31 4.17
4700 5339 2.289010 TGACAGGTGACAGCAGTATGTG 60.289 50.000 7.50 0.00 39.31 3.21
4701 5340 1.970640 TGACAGGTGACAGCAGTATGT 59.029 47.619 7.50 2.12 39.31 2.29
4702 5341 2.614779 CTGACAGGTGACAGCAGTATG 58.385 52.381 7.50 0.00 40.87 2.39
4703 5342 1.552337 CCTGACAGGTGACAGCAGTAT 59.448 52.381 13.84 0.00 36.70 2.12
4704 5343 0.969149 CCTGACAGGTGACAGCAGTA 59.031 55.000 13.84 0.00 36.70 2.74
4705 5344 1.750930 CCTGACAGGTGACAGCAGT 59.249 57.895 13.84 4.73 36.70 4.40
4706 5345 1.670406 GCCTGACAGGTGACAGCAG 60.670 63.158 22.58 0.91 37.80 4.24
4707 5346 1.771783 ATGCCTGACAGGTGACAGCA 61.772 55.000 22.58 13.13 37.80 4.41
4708 5347 0.250234 TATGCCTGACAGGTGACAGC 59.750 55.000 22.58 7.70 37.80 4.40
4709 5348 2.558378 CATATGCCTGACAGGTGACAG 58.442 52.381 22.58 7.12 37.80 3.51
4710 5349 1.210234 CCATATGCCTGACAGGTGACA 59.790 52.381 22.58 12.57 37.80 3.58
4711 5350 1.475751 CCCATATGCCTGACAGGTGAC 60.476 57.143 22.58 6.99 37.80 3.67
4712 5351 0.839277 CCCATATGCCTGACAGGTGA 59.161 55.000 22.58 10.34 37.80 4.02
4713 5352 0.179009 CCCCATATGCCTGACAGGTG 60.179 60.000 22.58 12.50 37.80 4.00
4714 5353 0.327480 TCCCCATATGCCTGACAGGT 60.327 55.000 22.58 6.60 37.80 4.00
4715 5354 1.070604 ATCCCCATATGCCTGACAGG 58.929 55.000 17.83 17.83 38.80 4.00
4716 5355 1.701292 TCATCCCCATATGCCTGACAG 59.299 52.381 0.00 0.00 0.00 3.51
4717 5356 1.818419 TCATCCCCATATGCCTGACA 58.182 50.000 0.00 0.00 0.00 3.58
4718 5357 2.306805 TGATCATCCCCATATGCCTGAC 59.693 50.000 0.00 0.00 0.00 3.51
4719 5358 2.634848 TGATCATCCCCATATGCCTGA 58.365 47.619 0.00 0.00 0.00 3.86
4720 5359 3.664551 ATGATCATCCCCATATGCCTG 57.335 47.619 1.18 0.00 0.00 4.85
4721 5360 4.979690 TGATATGATCATCCCCATATGCCT 59.020 41.667 12.53 0.00 36.44 4.75
4722 5361 5.314718 TGATATGATCATCCCCATATGCC 57.685 43.478 12.53 0.00 36.44 4.40
4723 5362 5.237996 CGTTGATATGATCATCCCCATATGC 59.762 44.000 12.53 0.00 39.39 3.14
4724 5363 5.761726 CCGTTGATATGATCATCCCCATATG 59.238 44.000 12.53 0.00 39.39 1.78
4725 5364 5.429762 ACCGTTGATATGATCATCCCCATAT 59.570 40.000 12.53 0.00 39.39 1.78
4726 5365 4.782691 ACCGTTGATATGATCATCCCCATA 59.217 41.667 12.53 0.00 39.39 2.74
4727 5366 3.588842 ACCGTTGATATGATCATCCCCAT 59.411 43.478 12.53 0.00 39.39 4.00
4728 5367 2.978978 ACCGTTGATATGATCATCCCCA 59.021 45.455 12.53 6.01 39.39 4.96
4729 5368 3.703001 ACCGTTGATATGATCATCCCC 57.297 47.619 12.53 3.33 39.39 4.81
4730 5369 4.452455 GTCAACCGTTGATATGATCATCCC 59.548 45.833 16.80 5.91 42.47 3.85
4731 5370 4.452455 GGTCAACCGTTGATATGATCATCC 59.548 45.833 16.80 6.28 42.47 3.51
4732 5371 4.452455 GGGTCAACCGTTGATATGATCATC 59.548 45.833 16.80 0.00 42.47 2.92
4733 5372 4.141505 TGGGTCAACCGTTGATATGATCAT 60.142 41.667 16.80 13.81 44.64 2.45
4734 5373 3.198853 TGGGTCAACCGTTGATATGATCA 59.801 43.478 16.80 0.00 44.64 2.92
4735 5374 3.804036 TGGGTCAACCGTTGATATGATC 58.196 45.455 16.80 3.32 44.64 2.92
4736 5375 3.199946 ACTGGGTCAACCGTTGATATGAT 59.800 43.478 16.80 1.51 44.64 2.45
4737 5376 2.569853 ACTGGGTCAACCGTTGATATGA 59.430 45.455 16.80 1.98 44.64 2.15
4738 5377 2.985896 ACTGGGTCAACCGTTGATATG 58.014 47.619 16.80 10.10 44.64 1.78
4739 5378 3.713826 AACTGGGTCAACCGTTGATAT 57.286 42.857 16.80 0.00 44.64 1.63
4740 5379 3.495434 AAACTGGGTCAACCGTTGATA 57.505 42.857 16.80 6.47 44.64 2.15
4741 5380 2.358322 AAACTGGGTCAACCGTTGAT 57.642 45.000 16.80 0.00 44.64 2.57
4742 5381 2.131776 AAAACTGGGTCAACCGTTGA 57.868 45.000 9.99 9.99 44.64 3.18
4743 5382 2.951457 AAAAACTGGGTCAACCGTTG 57.049 45.000 4.78 4.78 44.64 4.10
4761 5400 3.192844 TGGCAGTCACGGTTAAACAAAAA 59.807 39.130 0.00 0.00 0.00 1.94
4762 5401 2.753452 TGGCAGTCACGGTTAAACAAAA 59.247 40.909 0.00 0.00 0.00 2.44
4763 5402 2.097791 GTGGCAGTCACGGTTAAACAAA 59.902 45.455 0.00 0.00 36.56 2.83
4764 5403 1.671845 GTGGCAGTCACGGTTAAACAA 59.328 47.619 0.00 0.00 36.56 2.83
4765 5404 1.301423 GTGGCAGTCACGGTTAAACA 58.699 50.000 0.00 0.00 36.56 2.83
4774 5413 1.802960 CAGATCAACAGTGGCAGTCAC 59.197 52.381 0.00 0.00 46.39 3.67
4775 5414 1.271001 CCAGATCAACAGTGGCAGTCA 60.271 52.381 0.00 0.00 0.00 3.41
4776 5415 1.002430 TCCAGATCAACAGTGGCAGTC 59.998 52.381 0.00 0.00 0.00 3.51
4777 5416 1.002888 CTCCAGATCAACAGTGGCAGT 59.997 52.381 0.00 0.00 0.00 4.40
4778 5417 1.277273 TCTCCAGATCAACAGTGGCAG 59.723 52.381 0.00 0.00 0.00 4.85
4779 5418 1.351076 TCTCCAGATCAACAGTGGCA 58.649 50.000 0.00 0.00 0.00 4.92
4780 5419 2.479566 TTCTCCAGATCAACAGTGGC 57.520 50.000 0.00 0.00 0.00 5.01
4781 5420 4.212143 TGATTCTCCAGATCAACAGTGG 57.788 45.455 0.00 0.00 0.00 4.00
4782 5421 6.479331 CAGTATGATTCTCCAGATCAACAGTG 59.521 42.308 0.00 0.00 39.69 3.66
4783 5422 6.382282 TCAGTATGATTCTCCAGATCAACAGT 59.618 38.462 0.00 0.00 42.56 3.55
4784 5423 6.814043 TCAGTATGATTCTCCAGATCAACAG 58.186 40.000 0.00 0.00 42.56 3.16
4785 5424 6.796785 TCAGTATGATTCTCCAGATCAACA 57.203 37.500 0.00 0.00 42.56 3.33
4801 5440 6.402550 CGAAACACCTCCTTGAATTCAGTATG 60.403 42.308 8.41 5.63 37.54 2.39
4802 5441 5.643777 CGAAACACCTCCTTGAATTCAGTAT 59.356 40.000 8.41 0.00 0.00 2.12
4803 5442 4.994852 CGAAACACCTCCTTGAATTCAGTA 59.005 41.667 8.41 0.00 0.00 2.74
4804 5443 3.815401 CGAAACACCTCCTTGAATTCAGT 59.185 43.478 8.41 0.00 0.00 3.41
4805 5444 4.065088 TCGAAACACCTCCTTGAATTCAG 58.935 43.478 8.41 3.35 0.00 3.02
4806 5445 3.813166 GTCGAAACACCTCCTTGAATTCA 59.187 43.478 3.38 3.38 0.00 2.57
4807 5446 4.065789 AGTCGAAACACCTCCTTGAATTC 58.934 43.478 0.00 0.00 0.00 2.17
4808 5447 3.815401 CAGTCGAAACACCTCCTTGAATT 59.185 43.478 0.00 0.00 0.00 2.17
4809 5448 3.403038 CAGTCGAAACACCTCCTTGAAT 58.597 45.455 0.00 0.00 0.00 2.57
4810 5449 2.833794 CAGTCGAAACACCTCCTTGAA 58.166 47.619 0.00 0.00 0.00 2.69
4811 5450 1.540363 GCAGTCGAAACACCTCCTTGA 60.540 52.381 0.00 0.00 0.00 3.02
4812 5451 0.868406 GCAGTCGAAACACCTCCTTG 59.132 55.000 0.00 0.00 0.00 3.61
4813 5452 0.759346 AGCAGTCGAAACACCTCCTT 59.241 50.000 0.00 0.00 0.00 3.36
4814 5453 0.759346 AAGCAGTCGAAACACCTCCT 59.241 50.000 0.00 0.00 0.00 3.69
4815 5454 1.531578 GAAAGCAGTCGAAACACCTCC 59.468 52.381 0.00 0.00 0.00 4.30
4816 5455 2.484889 AGAAAGCAGTCGAAACACCTC 58.515 47.619 0.00 0.00 0.00 3.85
4817 5456 2.622064 AGAAAGCAGTCGAAACACCT 57.378 45.000 0.00 0.00 0.00 4.00
4818 5457 4.806342 TTTAGAAAGCAGTCGAAACACC 57.194 40.909 0.00 0.00 0.00 4.16
4819 5458 7.573627 AGTAATTTAGAAAGCAGTCGAAACAC 58.426 34.615 0.00 0.00 0.00 3.32
4820 5459 7.724305 AGTAATTTAGAAAGCAGTCGAAACA 57.276 32.000 0.00 0.00 0.00 2.83
4821 5460 9.526286 GTTAGTAATTTAGAAAGCAGTCGAAAC 57.474 33.333 0.00 0.00 0.00 2.78
4822 5461 8.715088 GGTTAGTAATTTAGAAAGCAGTCGAAA 58.285 33.333 0.00 0.00 0.00 3.46
4823 5462 7.062605 CGGTTAGTAATTTAGAAAGCAGTCGAA 59.937 37.037 0.00 0.00 0.00 3.71
4824 5463 6.529125 CGGTTAGTAATTTAGAAAGCAGTCGA 59.471 38.462 0.00 0.00 0.00 4.20
4825 5464 6.529125 TCGGTTAGTAATTTAGAAAGCAGTCG 59.471 38.462 0.00 0.00 0.00 4.18
4826 5465 7.544915 AGTCGGTTAGTAATTTAGAAAGCAGTC 59.455 37.037 0.00 0.00 0.00 3.51
4827 5466 7.384477 AGTCGGTTAGTAATTTAGAAAGCAGT 58.616 34.615 0.00 0.00 0.00 4.40
4828 5467 7.829378 AGTCGGTTAGTAATTTAGAAAGCAG 57.171 36.000 0.00 0.00 0.00 4.24
4829 5468 8.611654 AAAGTCGGTTAGTAATTTAGAAAGCA 57.388 30.769 0.00 0.00 0.00 3.91
4830 5469 9.964253 GTAAAGTCGGTTAGTAATTTAGAAAGC 57.036 33.333 0.00 0.00 0.00 3.51
4834 5473 9.630098 CAGTGTAAAGTCGGTTAGTAATTTAGA 57.370 33.333 0.00 0.00 0.00 2.10
4835 5474 9.630098 TCAGTGTAAAGTCGGTTAGTAATTTAG 57.370 33.333 0.00 0.00 0.00 1.85
4836 5475 9.410556 GTCAGTGTAAAGTCGGTTAGTAATTTA 57.589 33.333 0.00 0.00 0.00 1.40
4837 5476 7.927629 TGTCAGTGTAAAGTCGGTTAGTAATTT 59.072 33.333 0.00 0.00 0.00 1.82
4838 5477 7.436118 TGTCAGTGTAAAGTCGGTTAGTAATT 58.564 34.615 0.00 0.00 0.00 1.40
4839 5478 6.985117 TGTCAGTGTAAAGTCGGTTAGTAAT 58.015 36.000 0.00 0.00 0.00 1.89
4840 5479 6.389830 TGTCAGTGTAAAGTCGGTTAGTAA 57.610 37.500 0.00 0.00 0.00 2.24
4841 5480 6.579666 ATGTCAGTGTAAAGTCGGTTAGTA 57.420 37.500 0.00 0.00 0.00 1.82
4842 5481 4.924305 TGTCAGTGTAAAGTCGGTTAGT 57.076 40.909 0.00 0.00 0.00 2.24
4843 5482 7.878477 TTAATGTCAGTGTAAAGTCGGTTAG 57.122 36.000 0.00 0.00 0.00 2.34
4844 5483 7.095523 GCTTTAATGTCAGTGTAAAGTCGGTTA 60.096 37.037 10.82 0.00 37.23 2.85
4845 5484 6.293244 GCTTTAATGTCAGTGTAAAGTCGGTT 60.293 38.462 10.82 0.00 37.23 4.44
4846 5485 5.178809 GCTTTAATGTCAGTGTAAAGTCGGT 59.821 40.000 10.82 0.00 37.23 4.69
4847 5486 5.178623 TGCTTTAATGTCAGTGTAAAGTCGG 59.821 40.000 10.82 0.00 37.23 4.79
4848 5487 6.071463 GTGCTTTAATGTCAGTGTAAAGTCG 58.929 40.000 10.82 0.00 37.23 4.18
4849 5488 6.204882 AGGTGCTTTAATGTCAGTGTAAAGTC 59.795 38.462 10.82 6.00 37.23 3.01
4850 5489 6.062095 AGGTGCTTTAATGTCAGTGTAAAGT 58.938 36.000 10.82 0.00 37.23 2.66
4851 5490 6.560253 AGGTGCTTTAATGTCAGTGTAAAG 57.440 37.500 6.61 6.61 37.71 1.85
4852 5491 7.221450 AGTAGGTGCTTTAATGTCAGTGTAAA 58.779 34.615 0.00 0.00 0.00 2.01
4853 5492 6.765403 AGTAGGTGCTTTAATGTCAGTGTAA 58.235 36.000 0.00 0.00 0.00 2.41
4854 5493 6.210784 AGAGTAGGTGCTTTAATGTCAGTGTA 59.789 38.462 0.00 0.00 0.00 2.90
4855 5494 5.012148 AGAGTAGGTGCTTTAATGTCAGTGT 59.988 40.000 0.00 0.00 0.00 3.55
4856 5495 5.349817 CAGAGTAGGTGCTTTAATGTCAGTG 59.650 44.000 0.00 0.00 0.00 3.66
4857 5496 5.482908 CAGAGTAGGTGCTTTAATGTCAGT 58.517 41.667 0.00 0.00 0.00 3.41
4858 5497 4.331168 GCAGAGTAGGTGCTTTAATGTCAG 59.669 45.833 0.00 0.00 37.96 3.51
4859 5498 4.253685 GCAGAGTAGGTGCTTTAATGTCA 58.746 43.478 0.00 0.00 37.96 3.58
4860 5499 4.253685 TGCAGAGTAGGTGCTTTAATGTC 58.746 43.478 0.00 0.00 41.78 3.06
4861 5500 4.286297 TGCAGAGTAGGTGCTTTAATGT 57.714 40.909 0.00 0.00 41.78 2.71
4862 5501 4.036027 CCATGCAGAGTAGGTGCTTTAATG 59.964 45.833 0.00 0.00 41.78 1.90
4863 5502 4.080356 TCCATGCAGAGTAGGTGCTTTAAT 60.080 41.667 0.00 0.00 41.78 1.40
4864 5503 3.263170 TCCATGCAGAGTAGGTGCTTTAA 59.737 43.478 0.00 0.00 41.78 1.52
4865 5504 2.837591 TCCATGCAGAGTAGGTGCTTTA 59.162 45.455 0.00 0.00 41.78 1.85
4866 5505 1.630369 TCCATGCAGAGTAGGTGCTTT 59.370 47.619 0.00 0.00 41.78 3.51
4867 5506 1.209019 CTCCATGCAGAGTAGGTGCTT 59.791 52.381 0.00 0.00 41.78 3.91
4868 5507 0.829333 CTCCATGCAGAGTAGGTGCT 59.171 55.000 0.00 0.00 41.78 4.40
4869 5508 0.179062 CCTCCATGCAGAGTAGGTGC 60.179 60.000 0.00 0.00 41.59 5.01
4870 5509 1.137872 GACCTCCATGCAGAGTAGGTG 59.862 57.143 15.27 0.00 40.63 4.00
4871 5510 1.490574 GACCTCCATGCAGAGTAGGT 58.509 55.000 11.41 11.41 43.21 3.08
4872 5511 0.755686 GGACCTCCATGCAGAGTAGG 59.244 60.000 0.00 0.00 35.64 3.18
4873 5512 1.489481 TGGACCTCCATGCAGAGTAG 58.511 55.000 0.00 0.00 42.01 2.57
4874 5513 3.709834 TGGACCTCCATGCAGAGTA 57.290 52.632 0.00 0.00 42.01 2.59
4875 5514 4.567195 TGGACCTCCATGCAGAGT 57.433 55.556 0.00 0.00 42.01 3.24
4887 5526 1.909302 TCAGAAACTGGAGGATGGACC 59.091 52.381 0.00 0.00 33.65 4.46
4888 5527 3.198635 TCATCAGAAACTGGAGGATGGAC 59.801 47.826 0.00 0.00 36.79 4.02
4889 5528 3.453717 CTCATCAGAAACTGGAGGATGGA 59.546 47.826 0.00 0.00 36.79 3.41
4890 5529 3.199508 ACTCATCAGAAACTGGAGGATGG 59.800 47.826 0.00 0.00 36.79 3.51
4891 5530 4.484537 ACTCATCAGAAACTGGAGGATG 57.515 45.455 0.00 0.00 37.33 3.51
4892 5531 5.523588 TCTACTCATCAGAAACTGGAGGAT 58.476 41.667 0.00 0.00 31.51 3.24
4893 5532 4.935578 TCTACTCATCAGAAACTGGAGGA 58.064 43.478 0.00 0.00 31.51 3.71
4894 5533 5.362143 TGATCTACTCATCAGAAACTGGAGG 59.638 44.000 0.00 0.00 31.51 4.30
4895 5534 6.462552 TGATCTACTCATCAGAAACTGGAG 57.537 41.667 0.00 0.00 31.51 3.86
4896 5535 7.429374 AATGATCTACTCATCAGAAACTGGA 57.571 36.000 0.00 0.00 44.03 3.86
4897 5536 8.503458 AAAATGATCTACTCATCAGAAACTGG 57.497 34.615 0.00 0.00 44.03 4.00
4898 5537 9.159364 TGAAAATGATCTACTCATCAGAAACTG 57.841 33.333 0.00 0.00 44.03 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.