Multiple sequence alignment - TraesCS7B01G066600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G066600 chr7B 100.000 8101 0 0 1 8101 72296334 72288234 0.000000e+00 14960.0
1 TraesCS7B01G066600 chr7B 94.946 831 42 0 1 831 701309431 701308601 0.000000e+00 1303.0
2 TraesCS7B01G066600 chr7B 95.294 170 6 2 5159 5327 516791928 516791760 1.340000e-67 268.0
3 TraesCS7B01G066600 chr7B 76.510 149 29 5 596 741 84553995 84554140 8.720000e-10 76.8
4 TraesCS7B01G066600 chr7A 95.613 4354 162 8 833 5164 118159486 118155140 0.000000e+00 6955.0
5 TraesCS7B01G066600 chr7A 94.348 1663 78 14 5939 7598 118146916 118145267 0.000000e+00 2536.0
6 TraesCS7B01G066600 chr7A 86.890 1762 157 31 1107 2860 450369466 450367771 0.000000e+00 1906.0
7 TraesCS7B01G066600 chr7A 95.923 466 18 1 5323 5787 118155141 118154676 0.000000e+00 754.0
8 TraesCS7B01G066600 chr7A 94.048 168 9 1 5783 5949 118147262 118147095 3.750000e-63 254.0
9 TraesCS7B01G066600 chr7A 90.164 61 6 0 7581 7641 118145263 118145203 6.740000e-11 80.5
10 TraesCS7B01G066600 chr7D 95.751 4095 144 10 833 4908 112795969 112791886 0.000000e+00 6571.0
11 TraesCS7B01G066600 chr7D 94.717 1060 40 6 6510 7563 112790462 112789413 0.000000e+00 1633.0
12 TraesCS7B01G066600 chr7D 87.689 991 86 17 5549 6521 112791454 112790482 0.000000e+00 1122.0
13 TraesCS7B01G066600 chr7D 85.575 513 30 3 7611 8101 112789062 112788572 1.570000e-136 497.0
14 TraesCS7B01G066600 chr7D 95.652 115 5 0 5031 5145 112791759 112791645 1.390000e-42 185.0
15 TraesCS7B01G066600 chr2D 91.273 2326 168 17 1102 3414 450901231 450903534 0.000000e+00 3138.0
16 TraesCS7B01G066600 chr2D 84.953 319 32 5 874 1192 125502441 125502139 7.900000e-80 309.0
17 TraesCS7B01G066600 chr2D 93.750 176 9 2 5155 5328 475083664 475083489 6.230000e-66 263.0
18 TraesCS7B01G066600 chr2D 81.119 143 18 1 1415 1557 125502142 125502009 1.110000e-18 106.0
19 TraesCS7B01G066600 chr2D 95.745 47 2 0 3368 3414 37982184 37982230 8.720000e-10 76.8
20 TraesCS7B01G066600 chr2D 95.122 41 1 1 1063 1103 247393537 247393576 6.790000e-06 63.9
21 TraesCS7B01G066600 chr1B 86.281 1764 172 33 1107 2860 153424460 153422757 0.000000e+00 1853.0
22 TraesCS7B01G066600 chr1B 86.691 819 76 10 1520 2332 634320355 634319564 0.000000e+00 878.0
23 TraesCS7B01G066600 chr1B 92.593 297 20 2 2564 2860 634318893 634318599 7.510000e-115 425.0
24 TraesCS7B01G066600 chr6B 86.023 1760 172 31 1109 2860 579876420 579878113 0.000000e+00 1820.0
25 TraesCS7B01G066600 chr6B 75.163 153 36 2 596 747 278276665 278276514 4.060000e-08 71.3
26 TraesCS7B01G066600 chr3A 92.987 827 58 0 1 827 13124366 13123540 0.000000e+00 1206.0
27 TraesCS7B01G066600 chr3A 92.806 834 57 2 1 831 95361112 95360279 0.000000e+00 1205.0
28 TraesCS7B01G066600 chr3A 92.407 619 47 0 1 619 13133036 13132418 0.000000e+00 883.0
29 TraesCS7B01G066600 chr3A 95.213 188 9 0 640 827 13127864 13127677 1.710000e-76 298.0
30 TraesCS7B01G066600 chr3A 91.935 186 10 5 5143 5327 731100699 731100880 1.040000e-63 255.0
31 TraesCS7B01G066600 chr4A 91.679 673 54 1 155 827 59276858 59276188 0.000000e+00 931.0
32 TraesCS7B01G066600 chr2B 84.326 319 33 6 874 1192 178827276 178826975 6.150000e-76 296.0
33 TraesCS7B01G066600 chr2B 94.253 174 8 2 5157 5329 626882239 626882411 1.730000e-66 265.0
34 TraesCS7B01G066600 chr2B 76.190 147 33 2 596 741 640692318 640692173 8.720000e-10 76.8
35 TraesCS7B01G066600 chr3B 96.471 170 4 2 5158 5326 823802580 823802412 6.190000e-71 279.0
36 TraesCS7B01G066600 chrUn 95.783 166 6 1 5160 5324 115108067 115107902 4.820000e-67 267.0
37 TraesCS7B01G066600 chr1D 94.253 174 7 3 5153 5325 160451487 160451658 6.230000e-66 263.0
38 TraesCS7B01G066600 chr1D 94.675 169 7 2 5163 5329 126223342 126223510 2.240000e-65 261.0
39 TraesCS7B01G066600 chr5D 93.714 175 9 2 5160 5333 498492349 498492522 2.240000e-65 261.0
40 TraesCS7B01G066600 chr4B 74.715 439 105 6 371 806 496265077 496265512 2.980000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G066600 chr7B 72288234 72296334 8100 True 14960.000000 14960 100.000000 1 8101 1 chr7B.!!$R1 8100
1 TraesCS7B01G066600 chr7B 701308601 701309431 830 True 1303.000000 1303 94.946000 1 831 1 chr7B.!!$R3 830
2 TraesCS7B01G066600 chr7A 118154676 118159486 4810 True 3854.500000 6955 95.768000 833 5787 2 chr7A.!!$R3 4954
3 TraesCS7B01G066600 chr7A 450367771 450369466 1695 True 1906.000000 1906 86.890000 1107 2860 1 chr7A.!!$R1 1753
4 TraesCS7B01G066600 chr7A 118145203 118147262 2059 True 956.833333 2536 92.853333 5783 7641 3 chr7A.!!$R2 1858
5 TraesCS7B01G066600 chr7D 112788572 112795969 7397 True 2001.600000 6571 91.876800 833 8101 5 chr7D.!!$R1 7268
6 TraesCS7B01G066600 chr2D 450901231 450903534 2303 False 3138.000000 3138 91.273000 1102 3414 1 chr2D.!!$F3 2312
7 TraesCS7B01G066600 chr1B 153422757 153424460 1703 True 1853.000000 1853 86.281000 1107 2860 1 chr1B.!!$R1 1753
8 TraesCS7B01G066600 chr1B 634318599 634320355 1756 True 651.500000 878 89.642000 1520 2860 2 chr1B.!!$R2 1340
9 TraesCS7B01G066600 chr6B 579876420 579878113 1693 False 1820.000000 1820 86.023000 1109 2860 1 chr6B.!!$F1 1751
10 TraesCS7B01G066600 chr3A 95360279 95361112 833 True 1205.000000 1205 92.806000 1 831 1 chr3A.!!$R2 830
11 TraesCS7B01G066600 chr3A 13132418 13133036 618 True 883.000000 883 92.407000 1 619 1 chr3A.!!$R1 618
12 TraesCS7B01G066600 chr3A 13123540 13127864 4324 True 752.000000 1206 94.100000 1 827 2 chr3A.!!$R3 826
13 TraesCS7B01G066600 chr4A 59276188 59276858 670 True 931.000000 931 91.679000 155 827 1 chr4A.!!$R1 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 4370 1.017701 GTTACCCGCTCAAACTCCCG 61.018 60.000 0.00 0.00 0.00 5.14 F
1335 4868 2.047274 CGCGGGAGGCTGAAGAAA 60.047 61.111 0.00 0.00 40.44 2.52 F
2923 6901 0.548926 TGTCCCCAGCTCCCATAACA 60.549 55.000 0.00 0.00 0.00 2.41 F
3822 7809 0.109226 CTGGGAACGGAGACTTCGAC 60.109 60.000 10.91 3.42 39.98 4.20 F
4152 8139 0.883833 ATTCCAAAGCCGAGCAACTG 59.116 50.000 0.00 0.00 0.00 3.16 F
4445 8432 1.568612 GCTGCTAGTTTGTGCGAGCA 61.569 55.000 0.00 0.00 43.03 4.26 F
5641 9727 1.677552 GGGAGCTGACTTCCGGAAA 59.322 57.895 19.39 2.17 29.47 3.13 F
6408 10693 1.142870 TCTTACAGTTGCAACAGCCCT 59.857 47.619 30.11 10.25 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 5590 1.180029 AGCAGTTCCATGAACATGCC 58.820 50.000 18.77 0.62 44.11 4.40 R
2961 6939 0.679002 GGGCAGCAGCAATCTTCTGA 60.679 55.000 2.65 0.00 44.61 3.27 R
4428 8415 0.033366 TCTGCTCGCACAAACTAGCA 59.967 50.000 0.00 0.00 42.41 3.49 R
5807 9893 0.105224 TGGTTATACATCCGCCACCG 59.895 55.000 0.00 0.00 0.00 4.94 R
5996 10277 2.031120 GCTAGCAGGATCTCAGTGAGT 58.969 52.381 19.53 7.43 0.00 3.41 R
6404 10689 4.019591 AGACGGGGTGAAATTATATAGGGC 60.020 45.833 0.00 0.00 0.00 5.19 R
6782 11098 1.936547 GCTAGGGCATCTTTCAACTCG 59.063 52.381 0.00 0.00 38.54 4.18 R
8044 12691 0.039035 ATCAAAACCGCCTGCCCTTA 59.961 50.000 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
366 3865 1.065418 ACGGATGGATCCTTTGTGTCC 60.065 52.381 14.23 9.51 44.93 4.02
402 3901 4.002316 GAGCTGGAATGATATTGAGGAGC 58.998 47.826 0.00 0.00 0.00 4.70
720 4219 5.399991 TCTTTTGGTAGAACTCAGGGTAGA 58.600 41.667 0.00 0.00 0.00 2.59
813 4314 7.495606 CCTGTGATTGAGTAATACATTGCAGTA 59.504 37.037 0.00 0.00 0.00 2.74
869 4370 1.017701 GTTACCCGCTCAAACTCCCG 61.018 60.000 0.00 0.00 0.00 5.14
955 4465 2.439960 AACCACACCTGCGACTCCA 61.440 57.895 0.00 0.00 0.00 3.86
1335 4868 2.047274 CGCGGGAGGCTGAAGAAA 60.047 61.111 0.00 0.00 40.44 2.52
1905 5440 5.642063 CGTTATCACTTACAACACCCTGATT 59.358 40.000 0.00 0.00 0.00 2.57
2028 5568 2.359850 TCAGTTCATGGCCGGTGC 60.360 61.111 1.90 0.00 0.00 5.01
2064 5604 1.956636 GCTGAGGGCATGTTCATGGAA 60.957 52.381 13.55 0.00 41.35 3.53
2298 5838 2.590007 GCCATAGGCTGCACTCCG 60.590 66.667 0.50 0.00 46.69 4.63
2607 6585 4.273480 CGGACAATGATGAAGGATGGTTAC 59.727 45.833 0.00 0.00 0.00 2.50
2720 6698 3.499338 AGGCTGTTTGTCAAATGGATCA 58.501 40.909 0.40 0.00 0.00 2.92
2751 6729 9.190317 CTGGTATATAGTATACTCATCAAGGCA 57.810 37.037 9.12 0.00 0.00 4.75
2855 6833 6.038356 CCATTCTGGATGCTTATGAAACAAC 58.962 40.000 0.00 0.00 40.96 3.32
2874 6852 1.073923 ACGGGAAAGCATGAAGAAGGT 59.926 47.619 0.00 0.00 0.00 3.50
2877 6855 3.369471 CGGGAAAGCATGAAGAAGGTCTA 60.369 47.826 0.00 0.00 0.00 2.59
2923 6901 0.548926 TGTCCCCAGCTCCCATAACA 60.549 55.000 0.00 0.00 0.00 2.41
2961 6939 4.020928 TCCATCATGCTTCTGTGCAAAAAT 60.021 37.500 0.00 0.00 46.61 1.82
3111 7089 1.674221 GCTTCTCAGGTGTTCTGCGAT 60.674 52.381 0.00 0.00 43.06 4.58
3127 7105 2.574322 GCGATATGCAGTTTATTGGCG 58.426 47.619 0.00 0.00 45.45 5.69
3133 7111 3.328382 TGCAGTTTATTGGCGTAGAGT 57.672 42.857 0.00 0.00 0.00 3.24
3279 7266 8.512956 TCTAGAGTAACCATAATCGAAGCATAC 58.487 37.037 0.00 0.00 31.54 2.39
3282 7269 4.330944 AACCATAATCGAAGCATACGGA 57.669 40.909 0.00 0.00 0.00 4.69
3453 7440 1.154430 AAAAGGGCCCTCTACCAACA 58.846 50.000 28.84 0.00 0.00 3.33
3491 7478 8.651589 AATGGAATGATGAGAGCATTGATTAT 57.348 30.769 0.00 0.00 36.19 1.28
3540 7527 2.550180 GGTTGTTCAGGAGCTTCAAGAC 59.450 50.000 0.00 0.00 0.00 3.01
3576 7563 4.905429 TCAGCAAAAGCACAGTAATCCTA 58.095 39.130 0.00 0.00 0.00 2.94
3609 7596 2.300956 TTGCAAAAGCTGGGGATGTA 57.699 45.000 0.00 0.00 0.00 2.29
3765 7752 2.768492 GGCAGCAGGATTCAAGCCG 61.768 63.158 0.00 0.00 31.88 5.52
3819 7806 3.698040 TGTATACTGGGAACGGAGACTTC 59.302 47.826 4.17 0.00 41.09 3.01
3822 7809 0.109226 CTGGGAACGGAGACTTCGAC 60.109 60.000 10.91 3.42 39.98 4.20
3832 7819 3.667430 CGGAGACTTCGACAAGACAGTAC 60.667 52.174 0.00 0.00 33.34 2.73
3882 7869 5.207110 GCTTAGAGCCTGATGAAGATACA 57.793 43.478 0.00 0.00 34.48 2.29
4005 7992 7.093322 AGAATCCTATAAAAGCTTGCTTGTG 57.907 36.000 8.73 0.00 0.00 3.33
4062 8049 5.995282 TGAACAGCTTTTCGAGGAAATAAGA 59.005 36.000 8.04 0.00 31.34 2.10
4101 8088 8.154038 CGGTTAAATCGATCTTTATATCACGTG 58.846 37.037 9.94 9.94 0.00 4.49
4152 8139 0.883833 ATTCCAAAGCCGAGCAACTG 59.116 50.000 0.00 0.00 0.00 3.16
4173 8160 4.897025 GCTAGCAGCAATGAAAGAAGAT 57.103 40.909 10.63 0.00 41.89 2.40
4422 8409 6.183360 ACCATCAAGTTTGGACATGTTTCATT 60.183 34.615 0.00 0.00 37.69 2.57
4428 8415 3.737559 TGGACATGTTTCATTAGGGCT 57.262 42.857 0.00 0.00 0.00 5.19
4445 8432 1.568612 GCTGCTAGTTTGTGCGAGCA 61.569 55.000 0.00 0.00 43.03 4.26
4545 8532 6.041865 ACTTGACAATGTTCAAAATGATGGGA 59.958 34.615 0.00 0.00 35.07 4.37
4862 8849 8.504005 GTTAGAAGCTGTACTTAATTTTCTGCA 58.496 33.333 0.00 0.00 39.29 4.41
4955 8942 9.606631 GTCCAGATATACACAAGAAGAAGAAAT 57.393 33.333 0.00 0.00 0.00 2.17
5009 8996 5.010922 TGTGGATAGCATTCAAAAGCTGTTT 59.989 36.000 2.90 0.00 41.97 2.83
5013 9000 7.176515 TGGATAGCATTCAAAAGCTGTTTAGAA 59.823 33.333 2.90 0.00 41.97 2.10
5030 9017 7.030165 TGTTTAGAAAAGCAGATCTAGTCTCG 58.970 38.462 0.00 0.00 34.00 4.04
5077 9159 8.380644 CAGAACTGTTGGTTTAAGATATACACG 58.619 37.037 0.00 0.00 38.41 4.49
5145 9227 4.534103 AGACTAAGCTTCATCCCAAAGAGT 59.466 41.667 0.00 0.00 0.00 3.24
5167 9251 8.599792 AGAGTGTCTCCTAATAGATACTACTCC 58.400 40.741 3.65 0.00 44.90 3.85
5168 9252 7.692172 AGTGTCTCCTAATAGATACTACTCCC 58.308 42.308 1.95 0.00 43.61 4.30
5169 9253 7.518303 AGTGTCTCCTAATAGATACTACTCCCT 59.482 40.741 1.95 0.00 43.61 4.20
5170 9254 7.825761 GTGTCTCCTAATAGATACTACTCCCTC 59.174 44.444 0.00 0.00 35.42 4.30
5171 9255 7.037442 TGTCTCCTAATAGATACTACTCCCTCC 60.037 44.444 0.00 0.00 0.00 4.30
5172 9256 6.156602 TCTCCTAATAGATACTACTCCCTCCG 59.843 46.154 0.00 0.00 0.00 4.63
5173 9257 5.789575 TCCTAATAGATACTACTCCCTCCGT 59.210 44.000 0.00 0.00 0.00 4.69
5174 9258 6.274200 TCCTAATAGATACTACTCCCTCCGTT 59.726 42.308 0.00 0.00 0.00 4.44
5175 9259 6.598850 CCTAATAGATACTACTCCCTCCGTTC 59.401 46.154 0.00 0.00 0.00 3.95
5176 9260 3.226682 AGATACTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
5177 9261 2.784682 AGATACTACTCCCTCCGTTCCT 59.215 50.000 0.00 0.00 0.00 3.36
5178 9262 3.979347 AGATACTACTCCCTCCGTTCCTA 59.021 47.826 0.00 0.00 0.00 2.94
5179 9263 4.414846 AGATACTACTCCCTCCGTTCCTAA 59.585 45.833 0.00 0.00 0.00 2.69
5180 9264 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5181 9265 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5182 9266 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5183 9267 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5184 9268 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
5185 9269 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
5186 9270 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5187 9271 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5188 9272 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5189 9273 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5190 9274 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5191 9275 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5192 9276 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5193 9277 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
5208 9292 6.301169 AGTCTTTGTAAGGATTCCACTAGG 57.699 41.667 5.29 0.00 0.00 3.02
5209 9293 5.785940 AGTCTTTGTAAGGATTCCACTAGGT 59.214 40.000 5.29 0.00 35.89 3.08
5210 9294 5.875359 GTCTTTGTAAGGATTCCACTAGGTG 59.125 44.000 5.29 0.00 35.89 4.00
5211 9295 5.783360 TCTTTGTAAGGATTCCACTAGGTGA 59.217 40.000 5.29 0.00 35.23 4.02
5212 9296 6.271391 TCTTTGTAAGGATTCCACTAGGTGAA 59.729 38.462 5.29 0.00 35.23 3.18
5213 9297 5.416271 TGTAAGGATTCCACTAGGTGAAC 57.584 43.478 5.29 0.00 35.23 3.18
5214 9298 5.091552 TGTAAGGATTCCACTAGGTGAACT 58.908 41.667 5.29 0.00 35.23 3.01
5215 9299 6.258354 TGTAAGGATTCCACTAGGTGAACTA 58.742 40.000 5.29 0.00 35.23 2.24
5216 9300 5.678955 AAGGATTCCACTAGGTGAACTAC 57.321 43.478 5.29 0.00 35.23 2.73
5217 9301 4.684724 AGGATTCCACTAGGTGAACTACA 58.315 43.478 5.29 0.00 35.23 2.74
5218 9302 5.281314 AGGATTCCACTAGGTGAACTACAT 58.719 41.667 5.29 0.00 35.23 2.29
5219 9303 6.441222 AGGATTCCACTAGGTGAACTACATA 58.559 40.000 5.29 0.00 35.23 2.29
5220 9304 6.324254 AGGATTCCACTAGGTGAACTACATAC 59.676 42.308 5.29 0.00 35.23 2.39
5221 9305 5.571784 TTCCACTAGGTGAACTACATACG 57.428 43.478 0.00 0.00 35.23 3.06
5222 9306 4.847198 TCCACTAGGTGAACTACATACGA 58.153 43.478 0.00 0.00 35.23 3.43
5223 9307 4.880120 TCCACTAGGTGAACTACATACGAG 59.120 45.833 0.00 0.00 35.23 4.18
5224 9308 4.497674 CCACTAGGTGAACTACATACGAGC 60.498 50.000 0.00 0.00 35.23 5.03
5225 9309 4.095932 CACTAGGTGAACTACATACGAGCA 59.904 45.833 0.00 0.00 35.23 4.26
5226 9310 4.703575 ACTAGGTGAACTACATACGAGCAA 59.296 41.667 0.00 0.00 0.00 3.91
5227 9311 4.530710 AGGTGAACTACATACGAGCAAA 57.469 40.909 0.00 0.00 0.00 3.68
5228 9312 4.890088 AGGTGAACTACATACGAGCAAAA 58.110 39.130 0.00 0.00 0.00 2.44
5229 9313 5.488341 AGGTGAACTACATACGAGCAAAAT 58.512 37.500 0.00 0.00 0.00 1.82
5230 9314 5.351465 AGGTGAACTACATACGAGCAAAATG 59.649 40.000 0.00 0.00 0.00 2.32
5231 9315 5.350365 GGTGAACTACATACGAGCAAAATGA 59.650 40.000 0.00 0.00 0.00 2.57
5232 9316 6.128391 GGTGAACTACATACGAGCAAAATGAA 60.128 38.462 0.00 0.00 0.00 2.57
5233 9317 7.414098 GGTGAACTACATACGAGCAAAATGAAT 60.414 37.037 0.00 0.00 0.00 2.57
5234 9318 7.426456 GTGAACTACATACGAGCAAAATGAATG 59.574 37.037 0.00 0.00 0.00 2.67
5235 9319 7.333174 TGAACTACATACGAGCAAAATGAATGA 59.667 33.333 0.00 0.00 0.00 2.57
5236 9320 7.609760 ACTACATACGAGCAAAATGAATGAA 57.390 32.000 0.00 0.00 0.00 2.57
5237 9321 8.213518 ACTACATACGAGCAAAATGAATGAAT 57.786 30.769 0.00 0.00 0.00 2.57
5238 9322 8.338259 ACTACATACGAGCAAAATGAATGAATC 58.662 33.333 0.00 0.00 0.00 2.52
5239 9323 7.325660 ACATACGAGCAAAATGAATGAATCT 57.674 32.000 0.00 0.00 0.00 2.40
5240 9324 8.437360 ACATACGAGCAAAATGAATGAATCTA 57.563 30.769 0.00 0.00 0.00 1.98
5241 9325 8.338259 ACATACGAGCAAAATGAATGAATCTAC 58.662 33.333 0.00 0.00 0.00 2.59
5242 9326 6.741992 ACGAGCAAAATGAATGAATCTACA 57.258 33.333 0.00 0.00 0.00 2.74
5243 9327 6.546395 ACGAGCAAAATGAATGAATCTACAC 58.454 36.000 0.00 0.00 0.00 2.90
5244 9328 6.372659 ACGAGCAAAATGAATGAATCTACACT 59.627 34.615 0.00 0.00 0.00 3.55
5245 9329 7.094634 ACGAGCAAAATGAATGAATCTACACTT 60.095 33.333 0.00 0.00 0.00 3.16
5246 9330 8.390354 CGAGCAAAATGAATGAATCTACACTTA 58.610 33.333 0.00 0.00 0.00 2.24
5248 9332 9.846248 AGCAAAATGAATGAATCTACACTTAAC 57.154 29.630 0.00 0.00 0.00 2.01
5249 9333 9.624697 GCAAAATGAATGAATCTACACTTAACA 57.375 29.630 0.00 0.00 0.00 2.41
5252 9336 9.793252 AAATGAATGAATCTACACTTAACATGC 57.207 29.630 0.00 0.00 0.00 4.06
5253 9337 7.920160 TGAATGAATCTACACTTAACATGCA 57.080 32.000 0.00 0.00 0.00 3.96
5254 9338 8.510243 TGAATGAATCTACACTTAACATGCAT 57.490 30.769 0.00 0.00 0.00 3.96
5255 9339 8.615211 TGAATGAATCTACACTTAACATGCATC 58.385 33.333 0.00 0.00 0.00 3.91
5256 9340 8.743085 AATGAATCTACACTTAACATGCATCT 57.257 30.769 0.00 0.00 0.00 2.90
5257 9341 9.836864 AATGAATCTACACTTAACATGCATCTA 57.163 29.630 0.00 0.00 0.00 1.98
5266 9350 9.658799 ACACTTAACATGCATCTATATACATCC 57.341 33.333 0.00 0.00 0.00 3.51
5267 9351 8.811378 CACTTAACATGCATCTATATACATCCG 58.189 37.037 0.00 0.00 0.00 4.18
5268 9352 8.531982 ACTTAACATGCATCTATATACATCCGT 58.468 33.333 0.00 0.00 0.00 4.69
5271 9355 8.877808 AACATGCATCTATATACATCCGTATG 57.122 34.615 0.00 0.00 38.79 2.39
5273 9357 7.922811 ACATGCATCTATATACATCCGTATGTG 59.077 37.037 3.56 0.00 45.99 3.21
5274 9358 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
5275 9359 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
5276 9360 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
5277 9361 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
5278 9362 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
5279 9363 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
5280 9364 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
5281 9365 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
5282 9366 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
5283 9367 5.353394 ACATCCGTATGTGGTTCATAGTT 57.647 39.130 0.00 0.00 44.79 2.24
5284 9368 5.116180 ACATCCGTATGTGGTTCATAGTTG 58.884 41.667 0.00 0.00 44.79 3.16
5285 9369 5.105106 ACATCCGTATGTGGTTCATAGTTGA 60.105 40.000 0.00 0.00 44.79 3.18
5286 9370 5.408880 TCCGTATGTGGTTCATAGTTGAA 57.591 39.130 0.00 0.00 39.36 2.69
5287 9371 5.984725 TCCGTATGTGGTTCATAGTTGAAT 58.015 37.500 0.00 0.00 43.49 2.57
5288 9372 6.046593 TCCGTATGTGGTTCATAGTTGAATC 58.953 40.000 0.00 0.00 43.49 2.52
5289 9373 6.049149 CCGTATGTGGTTCATAGTTGAATCT 58.951 40.000 1.17 0.00 42.46 2.40
5290 9374 6.201044 CCGTATGTGGTTCATAGTTGAATCTC 59.799 42.308 1.17 0.00 42.46 2.75
5291 9375 6.980978 CGTATGTGGTTCATAGTTGAATCTCT 59.019 38.462 1.17 0.00 42.46 3.10
5292 9376 8.135529 CGTATGTGGTTCATAGTTGAATCTCTA 58.864 37.037 1.17 0.00 42.46 2.43
5293 9377 9.250624 GTATGTGGTTCATAGTTGAATCTCTAC 57.749 37.037 1.17 0.43 42.46 2.59
5294 9378 7.239763 TGTGGTTCATAGTTGAATCTCTACA 57.760 36.000 1.17 0.00 42.46 2.74
5295 9379 7.676004 TGTGGTTCATAGTTGAATCTCTACAA 58.324 34.615 1.17 0.00 42.46 2.41
5296 9380 8.154203 TGTGGTTCATAGTTGAATCTCTACAAA 58.846 33.333 1.17 0.00 42.46 2.83
5297 9381 8.660373 GTGGTTCATAGTTGAATCTCTACAAAG 58.340 37.037 1.17 0.00 42.46 2.77
5298 9382 8.593679 TGGTTCATAGTTGAATCTCTACAAAGA 58.406 33.333 1.17 0.00 42.46 2.52
5299 9383 8.874816 GGTTCATAGTTGAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 43.49 3.01
5300 9384 9.646427 GTTCATAGTTGAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 43.49 3.24
5317 9401 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5318 9402 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
5319 9403 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5320 9404 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5321 9405 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5322 9406 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5323 9407 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5332 9416 6.082707 AGGAACGGAGGGAGTATATTTGTAT 58.917 40.000 0.00 0.00 0.00 2.29
5336 9420 5.307196 ACGGAGGGAGTATATTTGTATGCTT 59.693 40.000 0.00 0.00 0.00 3.91
5614 9700 5.922053 TGTGAATGATTCAGGGTGATAGAG 58.078 41.667 8.33 0.00 41.01 2.43
5641 9727 1.677552 GGGAGCTGACTTCCGGAAA 59.322 57.895 19.39 2.17 29.47 3.13
5734 9820 7.208777 ACAATGTTATTTGCAGTTTCATGTGA 58.791 30.769 0.00 0.00 0.00 3.58
5807 9893 7.553044 ACCACTAGATTTTGTTATTCCAGCTAC 59.447 37.037 0.00 0.00 0.00 3.58
5896 9988 4.398319 AGGAAGACACCAATGTAAAGTGG 58.602 43.478 0.00 0.00 39.95 4.00
5905 9997 3.314080 CCAATGTAAAGTGGTGTGTTCGT 59.686 43.478 0.00 0.00 0.00 3.85
5953 10234 5.565592 TGGTCTTATGCATCATTTGTGTC 57.434 39.130 0.19 0.00 0.00 3.67
5996 10277 3.935818 TTGGACAGTAAGGTTGTTGGA 57.064 42.857 0.00 0.00 0.00 3.53
6106 10387 7.624549 TCCCTTTATAGGTGCTCATATGAATC 58.375 38.462 6.90 2.50 40.19 2.52
6168 10449 9.330063 TGCTAAATTCAGGTTTATGTATCTCAG 57.670 33.333 0.00 0.00 0.00 3.35
6319 10600 5.833131 TCTCAGCACAAATTTAGACCCTTTT 59.167 36.000 0.00 0.00 0.00 2.27
6349 10630 7.669722 ACTGATTGAGGGTACACATTTAATTGT 59.330 33.333 0.00 0.00 0.00 2.71
6404 10689 5.468072 AGAGACATTCTTACAGTTGCAACAG 59.532 40.000 30.11 24.70 29.61 3.16
6408 10693 1.142870 TCTTACAGTTGCAACAGCCCT 59.857 47.619 30.11 10.25 0.00 5.19
6540 10856 5.874895 ATCTGATCATTAACATGCCATCG 57.125 39.130 0.00 0.00 0.00 3.84
6544 10860 4.696877 TGATCATTAACATGCCATCGGATC 59.303 41.667 0.00 0.00 0.00 3.36
6545 10861 4.356405 TCATTAACATGCCATCGGATCT 57.644 40.909 0.00 0.00 0.00 2.75
6546 10862 5.482163 TCATTAACATGCCATCGGATCTA 57.518 39.130 0.00 0.00 0.00 1.98
6600 10916 2.604139 GTTCACCAGAATCCCCCAAAA 58.396 47.619 0.00 0.00 35.92 2.44
6782 11098 3.834489 TCTCCTTTCTGCATGGATCTC 57.166 47.619 0.00 0.00 0.00 2.75
6794 11110 4.125703 GCATGGATCTCGAGTTGAAAGAT 58.874 43.478 13.13 0.00 32.53 2.40
6799 11115 1.902508 TCTCGAGTTGAAAGATGCCCT 59.097 47.619 13.13 0.00 0.00 5.19
6830 11146 7.149569 TCCTAAAATGAACTCAATGAAGCTG 57.850 36.000 0.00 0.00 0.00 4.24
6926 11242 4.676196 CGGCCAAAGAAATTCTCCAGATTG 60.676 45.833 2.24 0.00 0.00 2.67
7003 11319 5.373812 AGGAAAGACAAACTGGAGAGAAA 57.626 39.130 0.00 0.00 0.00 2.52
7023 11339 4.783764 AATAAAGAAAAGGGGCTTGTCG 57.216 40.909 0.00 0.00 33.28 4.35
7122 11438 3.242712 GTGTTTGTTTTGCTTCATCACGG 59.757 43.478 0.00 0.00 0.00 4.94
7145 11461 2.121291 TTTGACAAGTGGCACTGTGA 57.879 45.000 22.83 12.61 29.05 3.58
7191 11507 2.420372 GAGAAGACGAAAAGGGAATGGC 59.580 50.000 0.00 0.00 0.00 4.40
7192 11508 2.159382 GAAGACGAAAAGGGAATGGCA 58.841 47.619 0.00 0.00 0.00 4.92
7303 11619 8.934697 AGCCTATCAAGTTCATACTGGTAAATA 58.065 33.333 0.00 0.00 34.01 1.40
7384 11700 2.189594 TTGCAGAGATGACCAAGTGG 57.810 50.000 0.00 0.00 42.17 4.00
7468 11789 7.886629 AACAGTGCCTTATTCATGTCATATT 57.113 32.000 0.00 0.00 0.00 1.28
7469 11790 7.886629 ACAGTGCCTTATTCATGTCATATTT 57.113 32.000 0.00 0.00 0.00 1.40
7470 11791 7.709947 ACAGTGCCTTATTCATGTCATATTTG 58.290 34.615 0.00 0.00 0.00 2.32
7471 11792 7.557358 ACAGTGCCTTATTCATGTCATATTTGA 59.443 33.333 0.00 0.00 0.00 2.69
7472 11793 8.407832 CAGTGCCTTATTCATGTCATATTTGAA 58.592 33.333 0.00 0.00 32.48 2.69
7473 11794 8.627403 AGTGCCTTATTCATGTCATATTTGAAG 58.373 33.333 0.00 0.00 33.26 3.02
7474 11795 8.408601 GTGCCTTATTCATGTCATATTTGAAGT 58.591 33.333 0.00 0.00 33.26 3.01
7519 11840 8.938883 AGGTGGTCATACTGAATCTAAATATGT 58.061 33.333 0.00 0.00 0.00 2.29
7572 11893 5.828328 GGTAGAAAAGGGCTGCTTTATATGT 59.172 40.000 0.00 0.00 0.00 2.29
7573 11894 6.017026 GGTAGAAAAGGGCTGCTTTATATGTC 60.017 42.308 0.00 0.00 0.00 3.06
7575 11896 6.190587 AGAAAAGGGCTGCTTTATATGTCTT 58.809 36.000 0.00 0.00 0.00 3.01
7576 11897 7.346471 AGAAAAGGGCTGCTTTATATGTCTTA 58.654 34.615 0.00 0.00 0.00 2.10
7614 12239 4.819630 TGATAGTTTGGTGACTGGTGAAAC 59.180 41.667 0.00 0.00 0.00 2.78
7666 12291 2.290323 ACTGTTATGACCCTTCCACAGC 60.290 50.000 0.00 0.00 0.00 4.40
7673 12298 2.972713 TGACCCTTCCACAGCCTATATC 59.027 50.000 0.00 0.00 0.00 1.63
7697 12322 5.511234 AAATGCTTCTCATGTAAGGATGC 57.489 39.130 14.67 11.93 35.48 3.91
7702 12327 4.442612 GCTTCTCATGTAAGGATGCTCTGA 60.443 45.833 10.99 0.00 0.00 3.27
7715 12340 4.565652 GGATGCTCTGAACTTTACAAGGGA 60.566 45.833 0.00 0.00 0.00 4.20
7722 12347 8.357402 GCTCTGAACTTTACAAGGGAAAATAAA 58.643 33.333 0.00 0.00 0.00 1.40
7726 12351 9.825109 TGAACTTTACAAGGGAAAATAAAAAGG 57.175 29.630 0.00 0.00 0.00 3.11
7727 12352 8.671384 AACTTTACAAGGGAAAATAAAAAGGC 57.329 30.769 0.00 0.00 0.00 4.35
7728 12353 7.797062 ACTTTACAAGGGAAAATAAAAAGGCA 58.203 30.769 0.00 0.00 0.00 4.75
7729 12354 7.931407 ACTTTACAAGGGAAAATAAAAAGGCAG 59.069 33.333 0.00 0.00 0.00 4.85
7730 12355 5.887214 ACAAGGGAAAATAAAAAGGCAGT 57.113 34.783 0.00 0.00 0.00 4.40
7731 12356 6.247229 ACAAGGGAAAATAAAAAGGCAGTT 57.753 33.333 0.00 0.00 0.00 3.16
7732 12357 6.054941 ACAAGGGAAAATAAAAAGGCAGTTG 58.945 36.000 0.00 0.00 0.00 3.16
7757 12382 0.526662 AGAGTTTCTACCTGGCGTCG 59.473 55.000 0.00 0.00 0.00 5.12
7758 12383 1.077089 GAGTTTCTACCTGGCGTCGC 61.077 60.000 9.22 9.22 0.00 5.19
7785 12410 3.420893 TGAAGGGGTTTATGCAGTCAAG 58.579 45.455 0.00 0.00 0.00 3.02
7792 12417 3.129287 GGTTTATGCAGTCAAGGTGGATG 59.871 47.826 0.00 0.00 0.00 3.51
7829 12454 1.813513 ACGAAACAAGGCTCATCTGG 58.186 50.000 0.00 0.00 0.00 3.86
7921 12546 4.567971 TGTTTTAATGGCTGAAGCAATGG 58.432 39.130 4.43 0.00 44.36 3.16
7934 12559 2.295885 AGCAATGGCAACTAGAGATGC 58.704 47.619 0.00 3.33 44.61 3.91
7935 12560 2.019249 GCAATGGCAACTAGAGATGCA 58.981 47.619 13.03 0.00 44.34 3.96
7946 12571 4.887748 ACTAGAGATGCATTATGGTTCGG 58.112 43.478 0.00 0.00 0.00 4.30
7948 12573 3.470709 AGAGATGCATTATGGTTCGGTG 58.529 45.455 0.00 0.00 0.00 4.94
7972 12619 6.329986 TGAACATATGGGTCAGATAATGAGGT 59.670 38.462 7.80 0.00 39.07 3.85
7976 12623 1.771255 GGGTCAGATAATGAGGTGGCT 59.229 52.381 0.00 0.00 39.07 4.75
7980 12627 3.624861 GTCAGATAATGAGGTGGCTGTTG 59.375 47.826 0.00 0.00 39.07 3.33
8036 12683 3.498774 AGCTCGGCCATTTTCTATGAT 57.501 42.857 2.24 0.00 0.00 2.45
8037 12684 3.406764 AGCTCGGCCATTTTCTATGATC 58.593 45.455 2.24 0.00 0.00 2.92
8038 12685 2.485814 GCTCGGCCATTTTCTATGATCC 59.514 50.000 2.24 0.00 0.00 3.36
8040 12687 2.441375 TCGGCCATTTTCTATGATCCCA 59.559 45.455 2.24 0.00 0.00 4.37
8041 12688 3.117701 TCGGCCATTTTCTATGATCCCAA 60.118 43.478 2.24 0.00 0.00 4.12
8042 12689 3.828451 CGGCCATTTTCTATGATCCCAAT 59.172 43.478 2.24 0.00 0.00 3.16
8043 12690 4.082571 CGGCCATTTTCTATGATCCCAATC 60.083 45.833 2.24 0.00 0.00 2.67
8044 12691 5.082425 GGCCATTTTCTATGATCCCAATCT 58.918 41.667 0.00 0.00 32.75 2.40
8045 12692 6.248433 GGCCATTTTCTATGATCCCAATCTA 58.752 40.000 0.00 0.00 32.75 1.98
8046 12693 6.721208 GGCCATTTTCTATGATCCCAATCTAA 59.279 38.462 0.00 0.00 32.75 2.10
8047 12694 7.094032 GGCCATTTTCTATGATCCCAATCTAAG 60.094 40.741 0.00 0.00 32.75 2.18
8048 12695 7.094032 GCCATTTTCTATGATCCCAATCTAAGG 60.094 40.741 0.00 0.00 32.75 2.69
8050 12697 5.505181 TTCTATGATCCCAATCTAAGGGC 57.495 43.478 0.00 0.00 46.36 5.19
8051 12698 4.502415 TCTATGATCCCAATCTAAGGGCA 58.498 43.478 0.00 0.00 46.36 5.36
8052 12699 3.803186 ATGATCCCAATCTAAGGGCAG 57.197 47.619 0.00 0.00 46.36 4.85
8053 12700 1.776667 TGATCCCAATCTAAGGGCAGG 59.223 52.381 0.00 0.00 46.36 4.85
8054 12701 0.480252 ATCCCAATCTAAGGGCAGGC 59.520 55.000 0.00 0.00 46.36 4.85
8055 12702 1.526917 CCCAATCTAAGGGCAGGCG 60.527 63.158 0.00 0.00 39.96 5.52
8056 12703 1.526917 CCAATCTAAGGGCAGGCGG 60.527 63.158 0.00 0.00 0.00 6.13
8089 12736 4.339247 AGTGAAGTTTGTCCATTGTCCAAG 59.661 41.667 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
720 4219 5.192522 ACCTGATCCAATCCAAGTCATAGTT 59.807 40.000 0.00 0.00 0.00 2.24
765 4264 3.936372 TCAGTACAGTCTGTTGCTACC 57.064 47.619 11.54 0.00 36.85 3.18
831 4332 6.492772 GGGTAACGGAGAAGGAAGAAGATATA 59.507 42.308 0.00 0.00 37.60 0.86
869 4370 1.138047 CCACTGGTCGCGATAACGTC 61.138 60.000 14.06 0.00 41.98 4.34
1335 4868 3.996124 AGCGCGACCTTGCTCAGT 61.996 61.111 12.10 0.00 36.53 3.41
1434 4967 4.104417 GCGTCGTCGAGCACCTCT 62.104 66.667 6.17 0.00 39.71 3.69
1621 5155 2.348888 GGAAGACCTCCTCCGCGAA 61.349 63.158 8.23 0.00 41.61 4.70
1942 5477 2.086869 CATCTCTTTGAACACCGCCAT 58.913 47.619 0.00 0.00 0.00 4.40
1995 5535 3.370840 ACTGACACCATGGCATTGTAT 57.629 42.857 13.04 0.00 33.12 2.29
2050 5590 1.180029 AGCAGTTCCATGAACATGCC 58.820 50.000 18.77 0.62 44.11 4.40
2051 5591 3.064545 GTCTAGCAGTTCCATGAACATGC 59.935 47.826 16.55 16.55 44.11 4.06
2052 5592 4.256110 TGTCTAGCAGTTCCATGAACATG 58.744 43.478 9.42 7.70 44.11 3.21
2064 5604 4.072839 GCTTAAAACCCTTGTCTAGCAGT 58.927 43.478 0.00 0.00 0.00 4.40
2229 5769 1.984026 AAGCCTGCCCATTTTCCCG 60.984 57.895 0.00 0.00 0.00 5.14
2607 6585 5.604565 TGATACAAGGTGTCATCTAGCATG 58.395 41.667 0.00 0.00 29.19 4.06
2702 6680 4.508461 TGCTGATCCATTTGACAAACAG 57.492 40.909 1.94 6.91 0.00 3.16
2720 6698 9.755122 TGATGAGTATACTATATACCAGTTGCT 57.245 33.333 5.09 0.00 0.00 3.91
2751 6729 1.915141 CACCCTGAGAAATGCAACCT 58.085 50.000 0.00 0.00 0.00 3.50
2855 6833 1.740025 GACCTTCTTCATGCTTTCCCG 59.260 52.381 0.00 0.00 0.00 5.14
2961 6939 0.679002 GGGCAGCAGCAATCTTCTGA 60.679 55.000 2.65 0.00 44.61 3.27
3111 7089 5.018539 ACTCTACGCCAATAAACTGCATA 57.981 39.130 0.00 0.00 0.00 3.14
3127 7105 6.935771 TCGTATATCTTCTGGGAAGACTCTAC 59.064 42.308 11.46 11.48 0.00 2.59
3133 7111 5.942961 ACTCTCGTATATCTTCTGGGAAGA 58.057 41.667 11.60 11.60 0.00 2.87
3279 7266 1.946768 TGCCAGAGTTTTGTCTTTCCG 59.053 47.619 0.00 0.00 0.00 4.30
3282 7269 2.378038 TGCTGCCAGAGTTTTGTCTTT 58.622 42.857 0.00 0.00 0.00 2.52
3491 7478 4.223700 ACAACTCATCTAGTCTGCCATCAA 59.776 41.667 0.00 0.00 37.50 2.57
3540 7527 4.524316 TTTGCTGATCTTGAAACCCATG 57.476 40.909 0.00 0.00 0.00 3.66
3576 7563 5.164606 CTTTTGCAAAAGCTTCAAGCATT 57.835 34.783 32.57 2.35 45.56 3.56
3636 7623 3.737850 CAGGTATCCTGCTTCCTTCATC 58.262 50.000 2.77 0.00 45.13 2.92
3663 7650 9.481340 GAAATCATACTTCTGTAGATGTGCATA 57.519 33.333 9.83 0.00 34.74 3.14
3765 7752 9.536510 AGAAGGGTATTAAGTATGACTAGATCC 57.463 37.037 0.00 0.00 0.00 3.36
3819 7806 5.946298 TGGTATACTTGTACTGTCTTGTCG 58.054 41.667 2.25 0.00 0.00 4.35
3832 7819 9.561069 AGCTTCCAAAATACTATGGTATACTTG 57.439 33.333 1.71 8.97 37.63 3.16
4005 7992 3.391506 AGTTTTGCTTTTCCAGATGCC 57.608 42.857 0.00 0.00 0.00 4.40
4062 8049 6.350906 TCGATTTAACCGATAACCCTTTGAT 58.649 36.000 0.00 0.00 0.00 2.57
4101 8088 4.617959 CATCCCTGTGCATTTTCATCATC 58.382 43.478 0.00 0.00 0.00 2.92
4152 8139 4.497674 CCATCTTCTTTCATTGCTGCTAGC 60.498 45.833 8.10 8.10 42.82 3.42
4173 8160 1.336702 GCAATTGTTGGTTCGATGCCA 60.337 47.619 7.40 5.26 0.00 4.92
4242 8229 1.788258 TCAGCACTTTCTCAGCTTCG 58.212 50.000 0.00 0.00 36.26 3.79
4398 8385 5.199024 TGAAACATGTCCAAACTTGATGG 57.801 39.130 0.00 0.00 39.41 3.51
4422 8409 0.391130 CGCACAAACTAGCAGCCCTA 60.391 55.000 0.00 0.00 0.00 3.53
4428 8415 0.033366 TCTGCTCGCACAAACTAGCA 59.967 50.000 0.00 0.00 42.41 3.49
4445 8432 2.499289 AGAAGAACGGCATCATCAGTCT 59.501 45.455 0.00 0.00 0.00 3.24
4527 8514 7.722949 AGTATGTCCCATCATTTTGAACATT 57.277 32.000 0.00 0.00 0.00 2.71
4545 8532 5.105756 GCCAAATTTAGCCTGTGAAGTATGT 60.106 40.000 0.00 0.00 0.00 2.29
4959 8946 7.646548 AGTTGCTGTCTGTAACTATCTATCA 57.353 36.000 10.72 0.00 47.00 2.15
5009 8996 7.860918 TTACGAGACTAGATCTGCTTTTCTA 57.139 36.000 5.18 0.00 38.00 2.10
5075 9157 3.472652 TGGCAACTTACTGTTCATTCGT 58.527 40.909 0.00 0.00 36.63 3.85
5077 9159 7.538575 ACATTATGGCAACTTACTGTTCATTC 58.461 34.615 0.00 0.00 36.95 2.67
5145 9227 7.037442 GGAGGGAGTAGTATCTATTAGGAGACA 60.037 44.444 0.00 0.00 30.76 3.41
5164 9248 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5165 9249 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5166 9250 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5167 9251 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
5168 9252 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5182 9266 8.487028 CCTAGTGGAATCCTTACAAAGACTTAT 58.513 37.037 0.00 0.00 34.57 1.73
5183 9267 7.456902 ACCTAGTGGAATCCTTACAAAGACTTA 59.543 37.037 0.00 0.00 37.04 2.24
5184 9268 6.272558 ACCTAGTGGAATCCTTACAAAGACTT 59.727 38.462 0.00 0.00 37.04 3.01
5185 9269 5.785940 ACCTAGTGGAATCCTTACAAAGACT 59.214 40.000 0.00 0.00 37.04 3.24
5186 9270 5.875359 CACCTAGTGGAATCCTTACAAAGAC 59.125 44.000 0.00 0.00 37.04 3.01
5187 9271 5.783360 TCACCTAGTGGAATCCTTACAAAGA 59.217 40.000 0.00 0.00 37.04 2.52
5188 9272 6.049955 TCACCTAGTGGAATCCTTACAAAG 57.950 41.667 0.00 0.00 37.04 2.77
5189 9273 6.043938 AGTTCACCTAGTGGAATCCTTACAAA 59.956 38.462 0.00 0.00 37.04 2.83
5190 9274 5.546499 AGTTCACCTAGTGGAATCCTTACAA 59.454 40.000 0.00 0.00 37.04 2.41
5191 9275 5.091552 AGTTCACCTAGTGGAATCCTTACA 58.908 41.667 0.00 0.00 37.04 2.41
5192 9276 5.678955 AGTTCACCTAGTGGAATCCTTAC 57.321 43.478 0.00 0.00 37.04 2.34
5193 9277 6.258354 TGTAGTTCACCTAGTGGAATCCTTA 58.742 40.000 0.00 0.00 37.04 2.69
5194 9278 5.091552 TGTAGTTCACCTAGTGGAATCCTT 58.908 41.667 0.00 0.00 37.04 3.36
5195 9279 4.684724 TGTAGTTCACCTAGTGGAATCCT 58.315 43.478 0.00 0.00 37.04 3.24
5196 9280 5.615925 ATGTAGTTCACCTAGTGGAATCC 57.384 43.478 0.00 0.00 37.04 3.01
5197 9281 6.039047 TCGTATGTAGTTCACCTAGTGGAATC 59.961 42.308 0.00 0.00 37.04 2.52
5198 9282 5.889853 TCGTATGTAGTTCACCTAGTGGAAT 59.110 40.000 0.00 0.00 37.04 3.01
5199 9283 5.255687 TCGTATGTAGTTCACCTAGTGGAA 58.744 41.667 0.00 0.00 37.04 3.53
5200 9284 4.847198 TCGTATGTAGTTCACCTAGTGGA 58.153 43.478 0.00 0.00 37.04 4.02
5201 9285 4.497674 GCTCGTATGTAGTTCACCTAGTGG 60.498 50.000 0.00 0.00 39.83 4.00
5202 9286 4.095932 TGCTCGTATGTAGTTCACCTAGTG 59.904 45.833 0.00 0.00 34.45 2.74
5203 9287 4.267536 TGCTCGTATGTAGTTCACCTAGT 58.732 43.478 0.00 0.00 0.00 2.57
5204 9288 4.895224 TGCTCGTATGTAGTTCACCTAG 57.105 45.455 0.00 0.00 0.00 3.02
5205 9289 5.648178 TTTGCTCGTATGTAGTTCACCTA 57.352 39.130 0.00 0.00 0.00 3.08
5206 9290 4.530710 TTTGCTCGTATGTAGTTCACCT 57.469 40.909 0.00 0.00 0.00 4.00
5207 9291 5.350365 TCATTTTGCTCGTATGTAGTTCACC 59.650 40.000 0.00 0.00 0.00 4.02
5208 9292 6.403333 TCATTTTGCTCGTATGTAGTTCAC 57.597 37.500 0.00 0.00 0.00 3.18
5209 9293 7.333174 TCATTCATTTTGCTCGTATGTAGTTCA 59.667 33.333 0.00 0.00 0.00 3.18
5210 9294 7.684670 TCATTCATTTTGCTCGTATGTAGTTC 58.315 34.615 0.00 0.00 0.00 3.01
5211 9295 7.609760 TCATTCATTTTGCTCGTATGTAGTT 57.390 32.000 0.00 0.00 0.00 2.24
5212 9296 7.609760 TTCATTCATTTTGCTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
5213 9297 8.554528 AGATTCATTCATTTTGCTCGTATGTAG 58.445 33.333 0.00 0.00 0.00 2.74
5214 9298 8.437360 AGATTCATTCATTTTGCTCGTATGTA 57.563 30.769 0.00 0.00 0.00 2.29
5215 9299 7.325660 AGATTCATTCATTTTGCTCGTATGT 57.674 32.000 0.00 0.00 0.00 2.29
5216 9300 8.337532 TGTAGATTCATTCATTTTGCTCGTATG 58.662 33.333 0.00 0.00 0.00 2.39
5217 9301 8.338259 GTGTAGATTCATTCATTTTGCTCGTAT 58.662 33.333 0.00 0.00 0.00 3.06
5218 9302 7.549134 AGTGTAGATTCATTCATTTTGCTCGTA 59.451 33.333 0.00 0.00 0.00 3.43
5219 9303 6.372659 AGTGTAGATTCATTCATTTTGCTCGT 59.627 34.615 0.00 0.00 0.00 4.18
5220 9304 6.779117 AGTGTAGATTCATTCATTTTGCTCG 58.221 36.000 0.00 0.00 0.00 5.03
5222 9306 9.846248 GTTAAGTGTAGATTCATTCATTTTGCT 57.154 29.630 0.00 0.00 0.00 3.91
5223 9307 9.624697 TGTTAAGTGTAGATTCATTCATTTTGC 57.375 29.630 0.00 0.00 0.00 3.68
5226 9310 9.793252 GCATGTTAAGTGTAGATTCATTCATTT 57.207 29.630 0.00 0.00 0.00 2.32
5227 9311 8.959548 TGCATGTTAAGTGTAGATTCATTCATT 58.040 29.630 0.00 0.00 0.00 2.57
5228 9312 8.510243 TGCATGTTAAGTGTAGATTCATTCAT 57.490 30.769 0.00 0.00 0.00 2.57
5229 9313 7.920160 TGCATGTTAAGTGTAGATTCATTCA 57.080 32.000 0.00 0.00 0.00 2.57
5230 9314 8.834465 AGATGCATGTTAAGTGTAGATTCATTC 58.166 33.333 2.46 0.00 0.00 2.67
5231 9315 8.743085 AGATGCATGTTAAGTGTAGATTCATT 57.257 30.769 2.46 0.00 0.00 2.57
5240 9324 9.658799 GGATGTATATAGATGCATGTTAAGTGT 57.341 33.333 2.46 0.00 38.38 3.55
5241 9325 8.811378 CGGATGTATATAGATGCATGTTAAGTG 58.189 37.037 2.46 0.00 38.38 3.16
5242 9326 8.531982 ACGGATGTATATAGATGCATGTTAAGT 58.468 33.333 2.46 0.00 38.38 2.24
5243 9327 8.932945 ACGGATGTATATAGATGCATGTTAAG 57.067 34.615 2.46 0.00 38.38 1.85
5245 9329 9.965824 CATACGGATGTATATAGATGCATGTTA 57.034 33.333 2.46 0.00 38.38 2.41
5246 9330 8.478066 ACATACGGATGTATATAGATGCATGTT 58.522 33.333 12.79 0.00 44.77 2.71
5247 9331 7.922811 CACATACGGATGTATATAGATGCATGT 59.077 37.037 14.23 1.37 44.82 3.21
5248 9332 7.383300 CCACATACGGATGTATATAGATGCATG 59.617 40.741 14.23 9.93 44.82 4.06
5249 9333 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
5250 9334 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
5251 9335 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
5252 9336 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
5253 9337 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
5254 9338 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
5255 9339 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
5256 9340 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
5257 9341 8.362464 ACTATGAACCACATACGGATGTATAT 57.638 34.615 14.23 1.68 44.82 0.86
5258 9342 7.770366 ACTATGAACCACATACGGATGTATA 57.230 36.000 14.23 6.48 44.82 1.47
5259 9343 6.665992 ACTATGAACCACATACGGATGTAT 57.334 37.500 14.23 5.54 44.82 2.29
5260 9344 6.097129 TCAACTATGAACCACATACGGATGTA 59.903 38.462 14.23 0.00 37.07 2.29
5261 9345 5.105106 TCAACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 38.62 3.06
5262 9346 5.356426 TCAACTATGAACCACATACGGATG 58.644 41.667 5.94 5.94 40.07 3.51
5263 9347 5.607939 TCAACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
5264 9348 5.408880 TTCAACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 40.59 4.69
5292 9376 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
5293 9377 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5294 9378 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5295 9379 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5296 9380 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5297 9381 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5298 9382 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5299 9383 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5302 9386 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
5303 9387 8.591072 CAAATATACTCCCTCCGTTCCTAAATA 58.409 37.037 0.00 0.00 0.00 1.40
5304 9388 7.072076 ACAAATATACTCCCTCCGTTCCTAAAT 59.928 37.037 0.00 0.00 0.00 1.40
5305 9389 6.384886 ACAAATATACTCCCTCCGTTCCTAAA 59.615 38.462 0.00 0.00 0.00 1.85
5306 9390 5.901276 ACAAATATACTCCCTCCGTTCCTAA 59.099 40.000 0.00 0.00 0.00 2.69
5307 9391 5.461327 ACAAATATACTCCCTCCGTTCCTA 58.539 41.667 0.00 0.00 0.00 2.94
5308 9392 4.296056 ACAAATATACTCCCTCCGTTCCT 58.704 43.478 0.00 0.00 0.00 3.36
5309 9393 4.684484 ACAAATATACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
5310 9394 5.638234 GCATACAAATATACTCCCTCCGTTC 59.362 44.000 0.00 0.00 0.00 3.95
5311 9395 5.307196 AGCATACAAATATACTCCCTCCGTT 59.693 40.000 0.00 0.00 0.00 4.44
5312 9396 4.838986 AGCATACAAATATACTCCCTCCGT 59.161 41.667 0.00 0.00 0.00 4.69
5313 9397 5.407407 AGCATACAAATATACTCCCTCCG 57.593 43.478 0.00 0.00 0.00 4.63
5314 9398 6.769512 TCAAGCATACAAATATACTCCCTCC 58.230 40.000 0.00 0.00 0.00 4.30
5315 9399 7.148340 GCATCAAGCATACAAATATACTCCCTC 60.148 40.741 0.00 0.00 44.79 4.30
5316 9400 6.656693 GCATCAAGCATACAAATATACTCCCT 59.343 38.462 0.00 0.00 44.79 4.20
5317 9401 6.846350 GCATCAAGCATACAAATATACTCCC 58.154 40.000 0.00 0.00 44.79 4.30
5323 9407 8.906867 ACTTTGTAGCATCAAGCATACAAATAT 58.093 29.630 16.98 10.71 45.12 1.28
5336 9420 3.740832 CACGTCTCAACTTTGTAGCATCA 59.259 43.478 0.00 0.00 0.00 3.07
5487 9573 6.855763 AGATCATGCCATCCAAAAGTTTTA 57.144 33.333 0.00 0.00 0.00 1.52
5502 9588 5.972107 ACCATAAGGCAATAAGATCATGC 57.028 39.130 0.00 0.00 39.06 4.06
5614 9700 0.907230 AGTCAGCTCCCCAGTCCTTC 60.907 60.000 0.00 0.00 0.00 3.46
5641 9727 2.362120 GCAGCCCCAGCAGACAAT 60.362 61.111 0.00 0.00 43.56 2.71
5807 9893 0.105224 TGGTTATACATCCGCCACCG 59.895 55.000 0.00 0.00 0.00 4.94
5953 10234 4.312443 AGTCATGGTAAGTGGTAACGTTG 58.688 43.478 11.99 0.00 42.51 4.10
5996 10277 2.031120 GCTAGCAGGATCTCAGTGAGT 58.969 52.381 19.53 7.43 0.00 3.41
6319 10600 9.575868 TTAAATGTGTACCCTCAATCAGTAAAA 57.424 29.630 0.00 0.00 0.00 1.52
6349 10630 7.190871 GGTTCTGAGTTGTTTTCGTGATTTTA 58.809 34.615 0.00 0.00 0.00 1.52
6404 10689 4.019591 AGACGGGGTGAAATTATATAGGGC 60.020 45.833 0.00 0.00 0.00 5.19
6408 10693 7.383156 AAAGGAGACGGGGTGAAATTATATA 57.617 36.000 0.00 0.00 0.00 0.86
6476 10761 6.872920 AGGAATCAACAACTGCTTAAACAAA 58.127 32.000 0.00 0.00 0.00 2.83
6544 10860 6.211515 GCATCCTGCATTAAAAATGGAGTAG 58.788 40.000 16.65 9.19 44.26 2.57
6545 10861 6.147864 GCATCCTGCATTAAAAATGGAGTA 57.852 37.500 16.65 4.99 44.26 2.59
6546 10862 5.014808 GCATCCTGCATTAAAAATGGAGT 57.985 39.130 16.65 0.86 44.26 3.85
6600 10916 4.673968 TCTCCTGTGACCAGTACAATAGT 58.326 43.478 0.00 0.00 36.95 2.12
6620 10936 5.731678 GGATACCATGTTATATTCCCCCTCT 59.268 44.000 0.00 0.00 0.00 3.69
6782 11098 1.936547 GCTAGGGCATCTTTCAACTCG 59.063 52.381 0.00 0.00 38.54 4.18
6794 11110 3.780294 TCATTTTAGGAAGAGCTAGGGCA 59.220 43.478 0.00 0.00 41.70 5.36
6799 11115 8.321353 TCATTGAGTTCATTTTAGGAAGAGCTA 58.679 33.333 0.00 0.00 0.00 3.32
6926 11242 3.753272 TGCTTTCTTCTGACAACATAGCC 59.247 43.478 0.00 0.00 0.00 3.93
7003 11319 3.763057 ACGACAAGCCCCTTTTCTTTAT 58.237 40.909 0.00 0.00 0.00 1.40
7122 11438 2.129607 CAGTGCCACTTGTCAAAATGC 58.870 47.619 0.00 0.00 0.00 3.56
7191 11507 5.163723 ACCGATCAGCATCACAGTATTTTTG 60.164 40.000 0.00 0.00 0.00 2.44
7192 11508 4.943705 ACCGATCAGCATCACAGTATTTTT 59.056 37.500 0.00 0.00 0.00 1.94
7303 11619 8.697507 AAAATTGACAGAAGAGATGGTAAACT 57.302 30.769 0.00 0.00 0.00 2.66
7384 11700 5.409520 TGTTGAGTGAACATGCTATCTTCAC 59.590 40.000 14.96 14.96 39.78 3.18
7438 11755 8.264347 TGACATGAATAAGGCACTGTTTCTATA 58.736 33.333 0.00 0.00 40.86 1.31
7440 11757 6.472016 TGACATGAATAAGGCACTGTTTCTA 58.528 36.000 0.00 0.00 40.86 2.10
7442 11759 5.627499 TGACATGAATAAGGCACTGTTTC 57.373 39.130 0.00 0.00 40.86 2.78
7468 11789 6.463995 AAACAGTTGGAATGCTTACTTCAA 57.536 33.333 0.00 0.00 0.00 2.69
7469 11790 7.255451 CCTTAAACAGTTGGAATGCTTACTTCA 60.255 37.037 0.00 0.00 0.00 3.02
7470 11791 7.084486 CCTTAAACAGTTGGAATGCTTACTTC 58.916 38.462 0.00 0.00 0.00 3.01
7471 11792 6.549736 ACCTTAAACAGTTGGAATGCTTACTT 59.450 34.615 0.00 0.00 0.00 2.24
7472 11793 6.016276 CACCTTAAACAGTTGGAATGCTTACT 60.016 38.462 0.00 0.00 0.00 2.24
7473 11794 6.149633 CACCTTAAACAGTTGGAATGCTTAC 58.850 40.000 0.00 0.00 0.00 2.34
7474 11795 5.242838 CCACCTTAAACAGTTGGAATGCTTA 59.757 40.000 0.00 0.00 0.00 3.09
7479 11800 4.798882 TGACCACCTTAAACAGTTGGAAT 58.201 39.130 0.00 0.00 0.00 3.01
7534 11855 3.935818 TTCTACCAGTTTGGGTCAACA 57.064 42.857 0.00 0.00 43.37 3.33
7576 11897 8.752187 ACCAAACTATCAAATGAAGCATATGTT 58.248 29.630 4.29 0.00 0.00 2.71
7644 12269 3.810743 GCTGTGGAAGGGTCATAACAGTT 60.811 47.826 0.00 0.00 35.36 3.16
7673 12298 5.747197 GCATCCTTACATGAGAAGCATTTTG 59.253 40.000 0.00 0.00 34.15 2.44
7702 12327 8.268605 TGCCTTTTTATTTTCCCTTGTAAAGTT 58.731 29.630 0.00 0.00 44.25 2.66
7715 12340 7.496747 TCTTGTAGCAACTGCCTTTTTATTTT 58.503 30.769 0.00 0.00 43.38 1.82
7722 12347 3.214696 ACTCTTGTAGCAACTGCCTTT 57.785 42.857 0.00 0.00 43.38 3.11
7723 12348 2.938956 ACTCTTGTAGCAACTGCCTT 57.061 45.000 0.00 0.00 43.38 4.35
7724 12349 2.938956 AACTCTTGTAGCAACTGCCT 57.061 45.000 0.00 0.00 43.38 4.75
7725 12350 3.142174 AGAAACTCTTGTAGCAACTGCC 58.858 45.455 0.00 0.00 43.38 4.85
7726 12351 4.152580 GGTAGAAACTCTTGTAGCAACTGC 59.847 45.833 0.00 0.00 42.49 4.40
7727 12352 5.406780 CAGGTAGAAACTCTTGTAGCAACTG 59.593 44.000 0.00 0.00 32.63 3.16
7728 12353 5.511545 CCAGGTAGAAACTCTTGTAGCAACT 60.512 44.000 0.00 0.00 32.63 3.16
7729 12354 4.691216 CCAGGTAGAAACTCTTGTAGCAAC 59.309 45.833 0.00 0.00 32.63 4.17
7730 12355 4.802918 GCCAGGTAGAAACTCTTGTAGCAA 60.803 45.833 0.00 0.00 32.63 3.91
7731 12356 3.306780 GCCAGGTAGAAACTCTTGTAGCA 60.307 47.826 0.00 0.00 32.63 3.49
7732 12357 3.263261 GCCAGGTAGAAACTCTTGTAGC 58.737 50.000 0.00 0.00 0.00 3.58
7765 12390 2.755103 CCTTGACTGCATAAACCCCTTC 59.245 50.000 0.00 0.00 0.00 3.46
7766 12391 2.110011 ACCTTGACTGCATAAACCCCTT 59.890 45.455 0.00 0.00 0.00 3.95
7785 12410 2.101415 GGGATTAAAAGCTGCATCCACC 59.899 50.000 15.30 4.60 37.52 4.61
7792 12417 4.893424 TCGTATTGGGATTAAAAGCTGC 57.107 40.909 0.00 0.00 0.00 5.25
7829 12454 4.436852 CCGTGGTGTCACTAATTACAATGC 60.437 45.833 2.35 0.00 41.53 3.56
7851 12476 1.391157 TTGCAGCAACAAGACCACCC 61.391 55.000 2.83 0.00 0.00 4.61
7858 12483 3.118542 GGAAACTTCTTGCAGCAACAAG 58.881 45.455 18.64 18.64 46.86 3.16
7921 12546 5.333645 CGAACCATAATGCATCTCTAGTTGC 60.334 44.000 0.00 6.15 40.24 4.17
7934 12559 5.048782 CCCATATGTTCACCGAACCATAATG 60.049 44.000 1.24 3.63 41.35 1.90
7935 12560 5.070001 CCCATATGTTCACCGAACCATAAT 58.930 41.667 1.24 0.00 41.35 1.28
7946 12571 6.652481 CCTCATTATCTGACCCATATGTTCAC 59.348 42.308 1.24 0.00 0.00 3.18
7948 12573 6.652481 CACCTCATTATCTGACCCATATGTTC 59.348 42.308 1.24 0.00 0.00 3.18
7972 12619 4.824479 TCATTCATAGTCTCAACAGCCA 57.176 40.909 0.00 0.00 0.00 4.75
7976 12623 5.104776 CCCTCCTTCATTCATAGTCTCAACA 60.105 44.000 0.00 0.00 0.00 3.33
7980 12627 5.622346 AACCCTCCTTCATTCATAGTCTC 57.378 43.478 0.00 0.00 0.00 3.36
8038 12685 1.526917 CCGCCTGCCCTTAGATTGG 60.527 63.158 0.00 0.00 0.00 3.16
8040 12687 0.331616 AAACCGCCTGCCCTTAGATT 59.668 50.000 0.00 0.00 0.00 2.40
8041 12688 0.331616 AAAACCGCCTGCCCTTAGAT 59.668 50.000 0.00 0.00 0.00 1.98
8042 12689 0.608035 CAAAACCGCCTGCCCTTAGA 60.608 55.000 0.00 0.00 0.00 2.10
8043 12690 0.608035 TCAAAACCGCCTGCCCTTAG 60.608 55.000 0.00 0.00 0.00 2.18
8044 12691 0.039035 ATCAAAACCGCCTGCCCTTA 59.961 50.000 0.00 0.00 0.00 2.69
8045 12692 1.228862 ATCAAAACCGCCTGCCCTT 60.229 52.632 0.00 0.00 0.00 3.95
8046 12693 1.978617 CATCAAAACCGCCTGCCCT 60.979 57.895 0.00 0.00 0.00 5.19
8047 12694 1.531739 TTCATCAAAACCGCCTGCCC 61.532 55.000 0.00 0.00 0.00 5.36
8048 12695 0.109132 CTTCATCAAAACCGCCTGCC 60.109 55.000 0.00 0.00 0.00 4.85
8049 12696 0.598065 ACTTCATCAAAACCGCCTGC 59.402 50.000 0.00 0.00 0.00 4.85
8050 12697 1.879380 TCACTTCATCAAAACCGCCTG 59.121 47.619 0.00 0.00 0.00 4.85
8051 12698 2.270352 TCACTTCATCAAAACCGCCT 57.730 45.000 0.00 0.00 0.00 5.52
8052 12699 2.293399 ACTTCACTTCATCAAAACCGCC 59.707 45.455 0.00 0.00 0.00 6.13
8053 12700 3.626028 ACTTCACTTCATCAAAACCGC 57.374 42.857 0.00 0.00 0.00 5.68
8054 12701 5.339990 ACAAACTTCACTTCATCAAAACCG 58.660 37.500 0.00 0.00 0.00 4.44
8055 12702 5.748630 GGACAAACTTCACTTCATCAAAACC 59.251 40.000 0.00 0.00 0.00 3.27
8056 12703 6.329496 TGGACAAACTTCACTTCATCAAAAC 58.671 36.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.