Multiple sequence alignment - TraesCS7B01G066200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G066200 chr7B 100.000 4510 0 0 1 4510 72236350 72240859 0.000000e+00 8329.0
1 TraesCS7B01G066200 chr7D 96.445 3966 111 16 1 3952 112427604 112431553 0.000000e+00 6516.0
2 TraesCS7B01G066200 chr7D 91.209 182 14 2 4085 4266 112432147 112432326 3.480000e-61 246.0
3 TraesCS7B01G066200 chr7D 98.077 52 0 1 2601 2652 73460737 73460687 6.210000e-14 89.8
4 TraesCS7B01G066200 chr7A 93.040 1954 82 21 2333 4253 117790241 117792173 0.000000e+00 2806.0
5 TraesCS7B01G066200 chr7A 91.742 1780 92 23 341 2083 117787907 117789668 0.000000e+00 2422.0
6 TraesCS7B01G066200 chr7A 88.849 278 25 3 1991 2264 117789672 117789947 2.010000e-88 337.0
7 TraesCS7B01G066200 chr7A 87.313 268 28 5 1 264 117787373 117787638 7.330000e-78 302.0
8 TraesCS7B01G066200 chr7A 98.148 54 0 1 2601 2654 565424568 565424516 4.800000e-15 93.5
9 TraesCS7B01G066200 chr7A 96.364 55 1 1 2598 2652 197392651 197392704 6.210000e-14 89.8
10 TraesCS7B01G066200 chr2D 84.672 137 13 7 2343 2476 448141502 448141633 3.660000e-26 130.0
11 TraesCS7B01G066200 chr2A 84.672 137 13 7 2343 2476 592783216 592783347 3.660000e-26 130.0
12 TraesCS7B01G066200 chr2A 96.364 55 2 0 2598 2652 449151340 449151394 1.730000e-14 91.6
13 TraesCS7B01G066200 chr2A 94.643 56 2 1 2601 2656 28180716 28180662 8.040000e-13 86.1
14 TraesCS7B01G066200 chr2B 84.058 138 14 7 2343 2477 527886976 527887108 4.740000e-25 126.0
15 TraesCS7B01G066200 chr6A 98.077 52 0 1 2601 2652 276010057 276010007 6.210000e-14 89.8
16 TraesCS7B01G066200 chr5D 93.220 59 3 1 2594 2651 261361582 261361524 8.040000e-13 86.1
17 TraesCS7B01G066200 chr3D 86.842 76 9 1 2341 2415 469482391 469482466 2.890000e-12 84.2
18 TraesCS7B01G066200 chr3B 87.692 65 8 0 2341 2405 623826989 623827053 4.840000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G066200 chr7B 72236350 72240859 4509 False 8329.00 8329 100.000 1 4510 1 chr7B.!!$F1 4509
1 TraesCS7B01G066200 chr7D 112427604 112432326 4722 False 3381.00 6516 93.827 1 4266 2 chr7D.!!$F1 4265
2 TraesCS7B01G066200 chr7A 117787373 117792173 4800 False 1466.75 2806 90.236 1 4253 4 chr7A.!!$F2 4252

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 956 0.740737 CCATGGATTCCGCTTTGTCC 59.259 55.0 5.56 0.0 0.00 4.02 F
1366 1599 0.033504 AGTGCACTGTCAACGTAGGG 59.966 55.0 20.97 0.0 0.00 3.53 F
1765 2006 0.792640 CAGTGCAACAGTCGGACATC 59.207 55.0 11.27 0.0 41.43 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 2169 0.307760 GTGCACTCCAAAACGACAGG 59.692 55.000 10.32 0.0 0.00 4.00 R
2594 3189 2.754552 GCCCACTTTGCTTATGACATCA 59.245 45.455 0.00 0.0 0.00 3.07 R
3751 4350 0.109132 GGCCAAAAATGTGAGGCTCG 60.109 55.000 10.42 0.0 46.23 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 6.128391 TGCTCGACTAACATAAATCAAACACC 60.128 38.462 0.00 0.00 0.00 4.16
198 203 8.220755 ACACAAATATATAAGTCCACGCATTT 57.779 30.769 0.00 0.00 0.00 2.32
406 617 4.704540 CCAACTAATTGCCATCACCTAACA 59.295 41.667 0.00 0.00 34.17 2.41
447 661 4.009675 TGGATGGCAGCTACTAACAAAAG 58.990 43.478 1.50 0.00 0.00 2.27
465 679 2.564471 GCTGAAGAGCCACTGCAAT 58.436 52.632 0.00 0.00 39.57 3.56
732 954 1.656818 CGCCATGGATTCCGCTTTGT 61.657 55.000 18.40 0.00 0.00 2.83
734 956 0.740737 CCATGGATTCCGCTTTGTCC 59.259 55.000 5.56 0.00 0.00 4.02
755 977 2.358737 CGGTCTGGTGGTGCCTTC 60.359 66.667 0.00 0.00 38.35 3.46
790 1012 1.228306 CGGCTCCTATCCGGTCTCT 60.228 63.158 0.00 0.00 42.99 3.10
828 1050 4.363990 AGCGCGATAGATGGCCCG 62.364 66.667 12.10 0.00 39.76 6.13
944 1170 1.458486 GAACCCATCACCACCACCA 59.542 57.895 0.00 0.00 0.00 4.17
947 1173 2.359850 CCATCACCACCACCACCG 60.360 66.667 0.00 0.00 0.00 4.94
1102 1328 3.050275 GCGCCACGGAAGCTCTTT 61.050 61.111 0.00 0.00 0.00 2.52
1110 1336 1.822371 ACGGAAGCTCTTTCTCTCTCC 59.178 52.381 0.00 0.00 36.03 3.71
1111 1337 2.099405 CGGAAGCTCTTTCTCTCTCCT 58.901 52.381 0.00 0.00 36.03 3.69
1116 1349 5.279960 GGAAGCTCTTTCTCTCTCCTTCTTT 60.280 44.000 0.00 0.00 36.03 2.52
1123 1356 0.617820 TCTCTCCTTCTTTCCCCCGG 60.618 60.000 0.00 0.00 0.00 5.73
1134 1367 2.283532 CCCCCGGTGAATTTGGCA 60.284 61.111 0.00 0.00 0.00 4.92
1196 1429 3.757745 ATCGATTTTCGTGGCGAATTT 57.242 38.095 4.79 0.00 45.28 1.82
1214 1447 5.571285 GAATTTAGGGGGATTACTGGATCC 58.429 45.833 4.20 4.20 44.03 3.36
1366 1599 0.033504 AGTGCACTGTCAACGTAGGG 59.966 55.000 20.97 0.00 0.00 3.53
1380 1613 2.833943 ACGTAGGGGATTTCTTTACCGT 59.166 45.455 0.00 0.00 0.00 4.83
1565 1804 7.014615 AGCCAAATGTAAGAGTTGAATTCTTGT 59.985 33.333 12.47 0.00 36.38 3.16
1587 1827 6.155827 TGTTGCCTACATTGAAACATTTAGC 58.844 36.000 0.00 0.00 0.00 3.09
1689 1930 1.430992 ACCCCCACCGGTATTGATAG 58.569 55.000 6.87 0.00 33.04 2.08
1690 1931 1.061967 ACCCCCACCGGTATTGATAGA 60.062 52.381 6.87 0.00 33.04 1.98
1692 1933 2.038557 CCCCCACCGGTATTGATAGAAG 59.961 54.545 6.87 0.00 0.00 2.85
1765 2006 0.792640 CAGTGCAACAGTCGGACATC 59.207 55.000 11.27 0.00 41.43 3.06
1854 2095 7.967854 TGATTGTAGTTTTTGTTCTCTGTTGTG 59.032 33.333 0.00 0.00 0.00 3.33
1928 2169 3.380637 TCCTAGTCTATGGTTTGCTCGTC 59.619 47.826 0.00 0.00 0.00 4.20
2035 2276 3.439857 AGCTTGTCCAAAGCCTCATTA 57.560 42.857 6.46 0.00 44.01 1.90
2319 2912 7.340743 TGGTTGGTCAAAGTATTTTCAGAGAAA 59.659 33.333 0.00 0.00 35.03 2.52
2415 3008 2.486966 GCCGACCTGCATTTGAGC 59.513 61.111 0.00 0.00 0.00 4.26
2539 3134 9.431887 GTTAGAGTTTGTCATATTCAAGTACCA 57.568 33.333 0.00 0.00 0.00 3.25
2594 3189 5.326069 AGGTGTGTACAGAGATAGACTGTT 58.674 41.667 0.00 0.00 44.69 3.16
2655 3250 7.958567 GCAAAAACAAAGTTTTACCCAAAGTAC 59.041 33.333 8.14 0.00 0.00 2.73
2752 3347 8.320617 ACAAACTGCCAAATTACCATATCATTT 58.679 29.630 0.00 0.00 0.00 2.32
2913 3508 5.026038 TGTTTACTCTCTGGGAACGAAAA 57.974 39.130 0.00 0.00 0.00 2.29
3007 3602 8.776376 AAAAACACATCATTAAGGCATTAAGG 57.224 30.769 9.09 9.09 34.44 2.69
3141 3736 2.094286 TGCACAGGACAAGTTTGGTTTG 60.094 45.455 0.00 0.00 0.00 2.93
3146 3741 4.339247 ACAGGACAAGTTTGGTTTGATCAG 59.661 41.667 0.00 0.00 0.00 2.90
3262 3861 0.981183 TGTGCGGGTGTCCTATTTCT 59.019 50.000 0.00 0.00 0.00 2.52
3374 3973 7.532682 TTTTCACAGGAATTAACACAAAAGC 57.467 32.000 0.00 0.00 31.93 3.51
3405 4004 7.130099 TGTTCTATGTTCTCTAATACCCCTCA 58.870 38.462 0.00 0.00 0.00 3.86
3417 4016 7.007723 TCTAATACCCCTCATGTTTGTGTTTT 58.992 34.615 0.00 0.00 0.00 2.43
3555 4154 4.276678 TGTTGTTGGAGCTTTCATCTTCTG 59.723 41.667 0.00 0.00 0.00 3.02
3574 4173 8.050778 TCTTCTGTCACACATTTTTGTACTTT 57.949 30.769 0.00 0.00 0.00 2.66
3610 4209 0.321564 TGGTACATCTGCAGCACCAC 60.322 55.000 19.20 10.93 34.40 4.16
3673 4272 9.368416 TGCTTAATTATCTGACCTAGTGATACT 57.632 33.333 0.00 0.00 0.00 2.12
3751 4350 1.673168 CCCCTCAAGATTACTGCAGC 58.327 55.000 15.27 0.00 0.00 5.25
3760 4359 0.460987 ATTACTGCAGCGAGCCTCAC 60.461 55.000 15.27 0.00 44.83 3.51
3783 4382 0.896923 TTTGGCCCTGCAATGATGTC 59.103 50.000 0.00 0.00 0.00 3.06
4030 4631 8.877195 TCCTAATTTAATAGGTTTCGCTAGGAT 58.123 33.333 2.73 0.00 42.63 3.24
4063 4664 9.778741 TTGACCACCAATCACTCTATAATATTC 57.221 33.333 0.00 0.00 0.00 1.75
4081 5182 6.716934 ATATTCTATGTGACACTTCGGAGT 57.283 37.500 7.20 0.00 36.25 3.85
4083 5184 4.959596 TCTATGTGACACTTCGGAGTAC 57.040 45.455 7.20 0.00 33.90 2.73
4103 5229 6.154445 AGTACGTACTTATTTGTGACACTGG 58.846 40.000 22.45 0.00 31.13 4.00
4114 5240 6.707440 TTTGTGACACTGGTTTTGTATCAT 57.293 33.333 7.20 0.00 0.00 2.45
4125 5251 7.394359 ACTGGTTTTGTATCATGAAAGCTACAT 59.606 33.333 0.00 0.00 33.32 2.29
4136 5262 5.794687 TGAAAGCTACATATTGGTCGTTG 57.205 39.130 0.00 0.00 0.00 4.10
4179 5305 3.830178 TCTCAGTGAAACCTAATCCGTGA 59.170 43.478 0.00 0.00 37.80 4.35
4183 5309 4.152402 CAGTGAAACCTAATCCGTGAAGTG 59.848 45.833 0.00 0.00 37.80 3.16
4192 5318 5.350365 CCTAATCCGTGAAGTGATTCGAAAA 59.650 40.000 0.00 0.00 33.46 2.29
4197 5323 4.154195 CCGTGAAGTGATTCGAAAAGGATT 59.846 41.667 0.00 0.00 0.00 3.01
4212 5338 5.927281 AAAGGATTGATTGGTCCAGAATG 57.073 39.130 0.00 0.00 36.96 2.67
4266 5392 3.942829 CCAGTCTGGTTAGAATTGCAGA 58.057 45.455 11.09 0.00 34.01 4.26
4267 5393 3.686726 CCAGTCTGGTTAGAATTGCAGAC 59.313 47.826 11.09 0.00 39.26 3.51
4268 5394 4.564406 CCAGTCTGGTTAGAATTGCAGACT 60.564 45.833 11.09 0.59 46.87 3.24
4269 5395 4.573900 AGTCTGGTTAGAATTGCAGACTG 58.426 43.478 4.08 0.00 45.00 3.51
4270 5396 4.284490 AGTCTGGTTAGAATTGCAGACTGA 59.716 41.667 6.65 0.00 45.00 3.41
4271 5397 4.997395 GTCTGGTTAGAATTGCAGACTGAA 59.003 41.667 6.65 0.00 36.91 3.02
4272 5398 5.121454 GTCTGGTTAGAATTGCAGACTGAAG 59.879 44.000 6.65 0.00 36.91 3.02
4273 5399 3.753272 TGGTTAGAATTGCAGACTGAAGC 59.247 43.478 6.65 0.00 0.00 3.86
4274 5400 3.181516 GGTTAGAATTGCAGACTGAAGCG 60.182 47.826 6.65 0.00 0.00 4.68
4275 5401 0.801251 AGAATTGCAGACTGAAGCGC 59.199 50.000 6.65 0.00 0.00 5.92
4276 5402 0.801251 GAATTGCAGACTGAAGCGCT 59.199 50.000 2.64 2.64 0.00 5.92
4277 5403 0.520404 AATTGCAGACTGAAGCGCTG 59.480 50.000 12.58 0.00 0.00 5.18
4279 5405 3.797546 GCAGACTGAAGCGCTGCC 61.798 66.667 12.58 6.94 46.94 4.85
4280 5406 3.485431 CAGACTGAAGCGCTGCCG 61.485 66.667 12.58 8.35 37.57 5.69
4281 5407 3.996124 AGACTGAAGCGCTGCCGT 61.996 61.111 12.86 12.86 36.67 5.68
4282 5408 3.044305 GACTGAAGCGCTGCCGTT 61.044 61.111 14.23 0.00 36.67 4.44
4283 5409 2.591715 ACTGAAGCGCTGCCGTTT 60.592 55.556 12.58 0.00 40.65 3.60
4284 5410 2.127118 CTGAAGCGCTGCCGTTTG 60.127 61.111 12.58 0.00 38.02 2.93
4285 5411 3.599792 CTGAAGCGCTGCCGTTTGG 62.600 63.158 12.58 0.00 38.02 3.28
4286 5412 3.660111 GAAGCGCTGCCGTTTGGT 61.660 61.111 12.58 0.00 38.02 3.67
4287 5413 2.281208 AAGCGCTGCCGTTTGGTA 60.281 55.556 12.58 0.00 36.52 3.25
4288 5414 1.644786 GAAGCGCTGCCGTTTGGTAT 61.645 55.000 12.58 0.00 38.02 2.73
4289 5415 1.644786 AAGCGCTGCCGTTTGGTATC 61.645 55.000 12.58 0.00 36.52 2.24
4290 5416 2.701006 CGCTGCCGTTTGGTATCG 59.299 61.111 0.00 0.00 37.67 2.92
4291 5417 1.807981 CGCTGCCGTTTGGTATCGA 60.808 57.895 0.00 0.00 41.24 3.59
4292 5418 1.752501 CGCTGCCGTTTGGTATCGAG 61.753 60.000 0.00 0.00 41.24 4.04
4293 5419 0.459585 GCTGCCGTTTGGTATCGAGA 60.460 55.000 0.00 0.00 37.67 4.04
4294 5420 2.004583 CTGCCGTTTGGTATCGAGAA 57.995 50.000 0.00 0.00 37.67 2.87
4295 5421 2.550978 CTGCCGTTTGGTATCGAGAAT 58.449 47.619 0.00 0.00 37.67 2.40
4296 5422 2.276201 TGCCGTTTGGTATCGAGAATG 58.724 47.619 0.00 0.00 37.67 2.67
4297 5423 1.597663 GCCGTTTGGTATCGAGAATGG 59.402 52.381 0.00 0.00 37.67 3.16
4298 5424 1.597663 CCGTTTGGTATCGAGAATGGC 59.402 52.381 0.00 0.00 0.00 4.40
4299 5425 1.597663 CGTTTGGTATCGAGAATGGCC 59.402 52.381 0.00 0.00 0.00 5.36
4300 5426 1.597663 GTTTGGTATCGAGAATGGCCG 59.402 52.381 0.00 0.00 0.00 6.13
4301 5427 0.531974 TTGGTATCGAGAATGGCCGC 60.532 55.000 0.00 0.00 0.00 6.53
4302 5428 1.668151 GGTATCGAGAATGGCCGCC 60.668 63.158 1.04 1.04 0.00 6.13
4303 5429 1.668151 GTATCGAGAATGGCCGCCC 60.668 63.158 7.03 0.00 0.00 6.13
4305 5431 2.377628 TATCGAGAATGGCCGCCCAC 62.378 60.000 7.03 0.00 45.77 4.61
4309 5435 4.476752 GAATGGCCGCCCACCGTA 62.477 66.667 7.03 0.00 45.77 4.02
4310 5436 3.980442 GAATGGCCGCCCACCGTAA 62.980 63.158 7.03 0.00 45.77 3.18
4311 5437 3.570822 AATGGCCGCCCACCGTAAA 62.571 57.895 7.03 0.00 45.77 2.01
4313 5439 4.710167 GGCCGCCCACCGTAAACT 62.710 66.667 0.00 0.00 34.38 2.66
4314 5440 3.122971 GCCGCCCACCGTAAACTC 61.123 66.667 0.00 0.00 34.38 3.01
4315 5441 2.435410 CCGCCCACCGTAAACTCC 60.435 66.667 0.00 0.00 34.38 3.85
4316 5442 2.812178 CGCCCACCGTAAACTCCG 60.812 66.667 0.00 0.00 0.00 4.63
4322 5448 4.604114 CCGTAAACTCCGGTTCCC 57.396 61.111 0.00 0.00 40.59 3.97
4323 5449 1.672898 CCGTAAACTCCGGTTCCCA 59.327 57.895 0.00 0.00 40.59 4.37
4324 5450 0.251073 CCGTAAACTCCGGTTCCCAT 59.749 55.000 0.00 0.00 40.59 4.00
4325 5451 1.481772 CCGTAAACTCCGGTTCCCATA 59.518 52.381 0.00 0.00 40.59 2.74
4326 5452 2.482490 CCGTAAACTCCGGTTCCCATAG 60.482 54.545 0.00 0.00 40.59 2.23
4327 5453 2.428171 CGTAAACTCCGGTTCCCATAGA 59.572 50.000 0.00 0.00 34.14 1.98
4328 5454 3.119029 CGTAAACTCCGGTTCCCATAGAA 60.119 47.826 0.00 0.00 34.14 2.10
4329 5455 4.621274 CGTAAACTCCGGTTCCCATAGAAA 60.621 45.833 0.00 0.00 35.85 2.52
4330 5456 4.376225 AAACTCCGGTTCCCATAGAAAA 57.624 40.909 0.00 0.00 35.85 2.29
4331 5457 4.376225 AACTCCGGTTCCCATAGAAAAA 57.624 40.909 0.00 0.00 35.85 1.94
4349 5475 2.157834 AAAACATACTGTCCGCGACA 57.842 45.000 8.23 9.55 40.50 4.35
4350 5476 1.425412 AAACATACTGTCCGCGACAC 58.575 50.000 8.23 4.10 37.67 3.67
4351 5477 0.731514 AACATACTGTCCGCGACACG 60.732 55.000 8.23 7.07 37.67 4.49
4365 5491 4.323477 CACGGGCGGAACAGGGAA 62.323 66.667 0.00 0.00 0.00 3.97
4366 5492 3.562232 ACGGGCGGAACAGGGAAA 61.562 61.111 0.00 0.00 0.00 3.13
4367 5493 3.053896 CGGGCGGAACAGGGAAAC 61.054 66.667 0.00 0.00 0.00 2.78
4368 5494 2.434774 GGGCGGAACAGGGAAACT 59.565 61.111 0.00 0.00 0.00 2.66
4377 5503 3.305709 CAGGGAAACTGCGTTCTCA 57.694 52.632 0.00 0.00 40.97 3.27
4378 5504 1.813513 CAGGGAAACTGCGTTCTCAT 58.186 50.000 0.00 0.00 40.97 2.90
4379 5505 2.154462 CAGGGAAACTGCGTTCTCATT 58.846 47.619 0.00 0.00 40.97 2.57
4380 5506 3.334691 CAGGGAAACTGCGTTCTCATTA 58.665 45.455 0.00 0.00 40.97 1.90
4381 5507 3.125316 CAGGGAAACTGCGTTCTCATTAC 59.875 47.826 0.00 0.00 40.97 1.89
4382 5508 2.093783 GGGAAACTGCGTTCTCATTACG 59.906 50.000 0.00 0.00 41.71 3.18
4383 5509 2.093783 GGAAACTGCGTTCTCATTACGG 59.906 50.000 0.00 0.00 39.31 4.02
4384 5510 1.722011 AACTGCGTTCTCATTACGGG 58.278 50.000 0.00 0.00 39.31 5.28
4385 5511 0.606604 ACTGCGTTCTCATTACGGGT 59.393 50.000 0.00 0.00 39.31 5.28
4386 5512 1.820519 ACTGCGTTCTCATTACGGGTA 59.179 47.619 0.00 0.00 39.31 3.69
4387 5513 2.190981 CTGCGTTCTCATTACGGGTAC 58.809 52.381 0.00 0.00 39.31 3.34
4388 5514 1.545136 TGCGTTCTCATTACGGGTACA 59.455 47.619 0.00 0.00 39.31 2.90
4389 5515 1.922545 GCGTTCTCATTACGGGTACAC 59.077 52.381 0.00 0.00 39.31 2.90
4390 5516 2.416431 GCGTTCTCATTACGGGTACACT 60.416 50.000 0.00 0.00 39.31 3.55
4391 5517 3.181497 GCGTTCTCATTACGGGTACACTA 60.181 47.826 0.00 0.00 39.31 2.74
4392 5518 4.675146 GCGTTCTCATTACGGGTACACTAA 60.675 45.833 0.00 0.00 39.31 2.24
4393 5519 4.795278 CGTTCTCATTACGGGTACACTAAC 59.205 45.833 0.00 0.00 35.47 2.34
4394 5520 4.989279 TCTCATTACGGGTACACTAACC 57.011 45.455 0.00 0.00 38.94 2.85
4395 5521 4.343231 TCTCATTACGGGTACACTAACCA 58.657 43.478 0.00 0.00 41.67 3.67
4396 5522 4.158394 TCTCATTACGGGTACACTAACCAC 59.842 45.833 0.00 0.00 41.67 4.16
4397 5523 3.119531 TCATTACGGGTACACTAACCACG 60.120 47.826 0.00 0.00 41.67 4.94
4398 5524 0.525761 TACGGGTACACTAACCACGC 59.474 55.000 0.00 0.00 41.67 5.34
4399 5525 1.289694 CGGGTACACTAACCACGCA 59.710 57.895 0.00 0.00 41.67 5.24
4400 5526 0.108520 CGGGTACACTAACCACGCAT 60.109 55.000 0.00 0.00 41.67 4.73
4401 5527 1.134753 CGGGTACACTAACCACGCATA 59.865 52.381 0.00 0.00 41.67 3.14
4402 5528 2.797087 CGGGTACACTAACCACGCATAG 60.797 54.545 0.00 0.00 41.67 2.23
4403 5529 2.199236 GGTACACTAACCACGCATAGC 58.801 52.381 0.00 0.00 39.50 2.97
4404 5530 2.417651 GGTACACTAACCACGCATAGCA 60.418 50.000 0.00 0.00 39.50 3.49
4405 5531 2.691409 ACACTAACCACGCATAGCAT 57.309 45.000 0.00 0.00 0.00 3.79
4406 5532 3.812156 ACACTAACCACGCATAGCATA 57.188 42.857 0.00 0.00 0.00 3.14
4407 5533 4.131649 ACACTAACCACGCATAGCATAA 57.868 40.909 0.00 0.00 0.00 1.90
4408 5534 4.703897 ACACTAACCACGCATAGCATAAT 58.296 39.130 0.00 0.00 0.00 1.28
4409 5535 5.123227 ACACTAACCACGCATAGCATAATT 58.877 37.500 0.00 0.00 0.00 1.40
4410 5536 6.285224 ACACTAACCACGCATAGCATAATTA 58.715 36.000 0.00 0.00 0.00 1.40
4411 5537 6.764085 ACACTAACCACGCATAGCATAATTAA 59.236 34.615 0.00 0.00 0.00 1.40
4412 5538 7.042051 ACACTAACCACGCATAGCATAATTAAG 60.042 37.037 0.00 0.00 0.00 1.85
4413 5539 6.990349 ACTAACCACGCATAGCATAATTAAGT 59.010 34.615 0.00 0.00 0.00 2.24
4414 5540 5.673337 ACCACGCATAGCATAATTAAGTG 57.327 39.130 0.00 0.00 0.00 3.16
4415 5541 5.364778 ACCACGCATAGCATAATTAAGTGA 58.635 37.500 0.00 0.00 0.00 3.41
4416 5542 5.236478 ACCACGCATAGCATAATTAAGTGAC 59.764 40.000 0.00 0.00 0.00 3.67
4417 5543 5.466728 CCACGCATAGCATAATTAAGTGACT 59.533 40.000 0.00 0.00 0.00 3.41
4418 5544 6.357980 CACGCATAGCATAATTAAGTGACTG 58.642 40.000 0.00 0.00 0.00 3.51
4419 5545 5.466728 ACGCATAGCATAATTAAGTGACTGG 59.533 40.000 0.00 0.00 0.00 4.00
4420 5546 5.615544 CGCATAGCATAATTAAGTGACTGGC 60.616 44.000 0.00 0.00 0.00 4.85
4421 5547 5.239306 GCATAGCATAATTAAGTGACTGGCA 59.761 40.000 0.00 0.00 0.00 4.92
4422 5548 6.072286 GCATAGCATAATTAAGTGACTGGCAT 60.072 38.462 0.00 0.00 0.00 4.40
4423 5549 7.522725 GCATAGCATAATTAAGTGACTGGCATT 60.523 37.037 0.00 0.00 0.00 3.56
4424 5550 9.002600 CATAGCATAATTAAGTGACTGGCATTA 57.997 33.333 0.00 0.00 0.00 1.90
4425 5551 7.264373 AGCATAATTAAGTGACTGGCATTAC 57.736 36.000 0.00 0.00 0.00 1.89
4426 5552 6.017934 AGCATAATTAAGTGACTGGCATTACG 60.018 38.462 0.00 0.00 0.00 3.18
4427 5553 6.018262 GCATAATTAAGTGACTGGCATTACGA 60.018 38.462 0.00 0.00 0.00 3.43
4428 5554 5.796350 AATTAAGTGACTGGCATTACGAC 57.204 39.130 0.00 0.00 0.00 4.34
4429 5555 2.094762 AAGTGACTGGCATTACGACC 57.905 50.000 0.00 0.00 0.00 4.79
4430 5556 0.108804 AGTGACTGGCATTACGACCG 60.109 55.000 0.00 0.00 0.00 4.79
4431 5557 1.082117 GTGACTGGCATTACGACCGG 61.082 60.000 0.00 0.00 38.37 5.28
4432 5558 1.520787 GACTGGCATTACGACCGGG 60.521 63.158 6.32 0.00 36.57 5.73
4433 5559 2.895372 CTGGCATTACGACCGGGC 60.895 66.667 6.32 0.00 0.00 6.13
4434 5560 3.673956 CTGGCATTACGACCGGGCA 62.674 63.158 8.76 0.00 0.00 5.36
4435 5561 2.895372 GGCATTACGACCGGGCAG 60.895 66.667 8.76 2.04 0.00 4.85
4437 5563 2.895372 CATTACGACCGGGCAGGC 60.895 66.667 8.76 0.00 46.52 4.85
4438 5564 4.171103 ATTACGACCGGGCAGGCC 62.171 66.667 8.76 1.81 46.52 5.19
4443 5569 3.712907 GACCGGGCAGGCCAAGTA 61.713 66.667 14.59 0.00 46.52 2.24
4444 5570 3.971109 GACCGGGCAGGCCAAGTAC 62.971 68.421 14.59 1.08 46.52 2.73
4445 5571 4.028490 CCGGGCAGGCCAAGTACA 62.028 66.667 14.59 0.00 37.98 2.90
4446 5572 2.033448 CGGGCAGGCCAAGTACAA 59.967 61.111 14.59 0.00 37.98 2.41
4447 5573 1.602323 CGGGCAGGCCAAGTACAAA 60.602 57.895 14.59 0.00 37.98 2.83
4448 5574 0.965363 CGGGCAGGCCAAGTACAAAT 60.965 55.000 14.59 0.00 37.98 2.32
4449 5575 0.817654 GGGCAGGCCAAGTACAAATC 59.182 55.000 13.10 0.00 37.98 2.17
4450 5576 0.451783 GGCAGGCCAAGTACAAATCG 59.548 55.000 5.01 0.00 35.81 3.34
4451 5577 0.179163 GCAGGCCAAGTACAAATCGC 60.179 55.000 5.01 0.00 0.00 4.58
4452 5578 0.451783 CAGGCCAAGTACAAATCGCC 59.548 55.000 5.01 0.00 36.62 5.54
4453 5579 0.037590 AGGCCAAGTACAAATCGCCA 59.962 50.000 5.01 0.00 38.90 5.69
4454 5580 0.170339 GGCCAAGTACAAATCGCCAC 59.830 55.000 0.00 0.00 36.38 5.01
4455 5581 0.878416 GCCAAGTACAAATCGCCACA 59.122 50.000 0.00 0.00 0.00 4.17
4456 5582 1.135689 GCCAAGTACAAATCGCCACAG 60.136 52.381 0.00 0.00 0.00 3.66
4457 5583 1.135689 CCAAGTACAAATCGCCACAGC 60.136 52.381 0.00 0.00 0.00 4.40
4458 5584 1.535028 CAAGTACAAATCGCCACAGCA 59.465 47.619 0.00 0.00 39.83 4.41
4459 5585 1.156736 AGTACAAATCGCCACAGCAC 58.843 50.000 0.00 0.00 39.83 4.40
4460 5586 0.871722 GTACAAATCGCCACAGCACA 59.128 50.000 0.00 0.00 39.83 4.57
4461 5587 0.871722 TACAAATCGCCACAGCACAC 59.128 50.000 0.00 0.00 39.83 3.82
4462 5588 1.100463 ACAAATCGCCACAGCACACA 61.100 50.000 0.00 0.00 39.83 3.72
4463 5589 0.386352 CAAATCGCCACAGCACACAG 60.386 55.000 0.00 0.00 39.83 3.66
4464 5590 0.819259 AAATCGCCACAGCACACAGT 60.819 50.000 0.00 0.00 39.83 3.55
4465 5591 0.034756 AATCGCCACAGCACACAGTA 59.965 50.000 0.00 0.00 39.83 2.74
4466 5592 0.670546 ATCGCCACAGCACACAGTAC 60.671 55.000 0.00 0.00 39.83 2.73
4467 5593 1.594021 CGCCACAGCACACAGTACA 60.594 57.895 0.00 0.00 39.83 2.90
4468 5594 0.950555 CGCCACAGCACACAGTACAT 60.951 55.000 0.00 0.00 39.83 2.29
4469 5595 1.671556 CGCCACAGCACACAGTACATA 60.672 52.381 0.00 0.00 39.83 2.29
4470 5596 1.732259 GCCACAGCACACAGTACATAC 59.268 52.381 0.00 0.00 39.53 2.39
4471 5597 2.346803 CCACAGCACACAGTACATACC 58.653 52.381 0.00 0.00 0.00 2.73
4472 5598 2.289382 CCACAGCACACAGTACATACCA 60.289 50.000 0.00 0.00 0.00 3.25
4473 5599 2.995939 CACAGCACACAGTACATACCAG 59.004 50.000 0.00 0.00 0.00 4.00
4474 5600 2.897326 ACAGCACACAGTACATACCAGA 59.103 45.455 0.00 0.00 0.00 3.86
4475 5601 3.254060 CAGCACACAGTACATACCAGAC 58.746 50.000 0.00 0.00 0.00 3.51
4476 5602 2.897326 AGCACACAGTACATACCAGACA 59.103 45.455 0.00 0.00 0.00 3.41
4477 5603 3.056536 AGCACACAGTACATACCAGACAG 60.057 47.826 0.00 0.00 0.00 3.51
4478 5604 3.056821 GCACACAGTACATACCAGACAGA 60.057 47.826 0.00 0.00 0.00 3.41
4479 5605 4.738124 CACACAGTACATACCAGACAGAG 58.262 47.826 0.00 0.00 0.00 3.35
4480 5606 3.193691 ACACAGTACATACCAGACAGAGC 59.806 47.826 0.00 0.00 0.00 4.09
4481 5607 3.193479 CACAGTACATACCAGACAGAGCA 59.807 47.826 0.00 0.00 0.00 4.26
4482 5608 3.832490 ACAGTACATACCAGACAGAGCAA 59.168 43.478 0.00 0.00 0.00 3.91
4483 5609 4.283467 ACAGTACATACCAGACAGAGCAAA 59.717 41.667 0.00 0.00 0.00 3.68
4484 5610 4.627467 CAGTACATACCAGACAGAGCAAAC 59.373 45.833 0.00 0.00 0.00 2.93
4485 5611 3.059352 ACATACCAGACAGAGCAAACC 57.941 47.619 0.00 0.00 0.00 3.27
4486 5612 2.371841 ACATACCAGACAGAGCAAACCA 59.628 45.455 0.00 0.00 0.00 3.67
4487 5613 3.181445 ACATACCAGACAGAGCAAACCAA 60.181 43.478 0.00 0.00 0.00 3.67
4488 5614 2.435372 ACCAGACAGAGCAAACCAAA 57.565 45.000 0.00 0.00 0.00 3.28
4489 5615 2.733956 ACCAGACAGAGCAAACCAAAA 58.266 42.857 0.00 0.00 0.00 2.44
4490 5616 2.689983 ACCAGACAGAGCAAACCAAAAG 59.310 45.455 0.00 0.00 0.00 2.27
4491 5617 2.544486 CCAGACAGAGCAAACCAAAAGC 60.544 50.000 0.00 0.00 0.00 3.51
4492 5618 2.360165 CAGACAGAGCAAACCAAAAGCT 59.640 45.455 0.00 0.00 42.17 3.74
4493 5619 3.565482 CAGACAGAGCAAACCAAAAGCTA 59.435 43.478 0.00 0.00 39.02 3.32
4494 5620 4.217118 CAGACAGAGCAAACCAAAAGCTAT 59.783 41.667 0.00 0.00 39.02 2.97
4496 5622 3.248266 CAGAGCAAACCAAAAGCTATGC 58.752 45.455 0.00 0.00 40.17 3.14
4497 5623 2.892852 AGAGCAAACCAAAAGCTATGCA 59.107 40.909 0.00 0.00 39.02 3.96
4498 5624 2.989166 GAGCAAACCAAAAGCTATGCAC 59.011 45.455 0.00 0.00 39.02 4.57
4499 5625 2.364970 AGCAAACCAAAAGCTATGCACA 59.635 40.909 0.00 0.00 36.73 4.57
4500 5626 2.476241 GCAAACCAAAAGCTATGCACAC 59.524 45.455 0.00 0.00 34.10 3.82
4501 5627 3.715495 CAAACCAAAAGCTATGCACACA 58.285 40.909 0.00 0.00 0.00 3.72
4502 5628 3.369546 AACCAAAAGCTATGCACACAC 57.630 42.857 0.00 0.00 0.00 3.82
4503 5629 1.266718 ACCAAAAGCTATGCACACACG 59.733 47.619 0.00 0.00 0.00 4.49
4504 5630 1.330306 CAAAAGCTATGCACACACGC 58.670 50.000 0.00 0.00 0.00 5.34
4505 5631 0.110238 AAAAGCTATGCACACACGCG 60.110 50.000 3.53 3.53 32.41 6.01
4506 5632 2.513065 AAAGCTATGCACACACGCGC 62.513 55.000 5.73 0.00 32.41 6.86
4507 5633 3.787676 GCTATGCACACACGCGCA 61.788 61.111 5.73 0.00 43.45 6.09
4508 5634 2.096406 CTATGCACACACGCGCAC 59.904 61.111 5.73 0.00 41.79 5.34
4509 5635 3.684809 CTATGCACACACGCGCACG 62.685 63.158 5.73 0.00 41.79 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.570034 GCACTATACCCAGTGTTAGAAACCA 60.570 44.000 5.26 0.00 46.31 3.67
16 17 3.203716 GCTTTGTACCTGCACTATACCC 58.796 50.000 0.00 0.00 0.00 3.69
18 19 4.260784 GCATGCTTTGTACCTGCACTATAC 60.261 45.833 11.37 0.00 39.63 1.47
64 65 7.920151 TGTGAATGTCAAGACAACTAATTTTGG 59.080 33.333 7.02 0.00 45.41 3.28
406 617 2.242043 CATTTTGTGAGCTGGGGTTCT 58.758 47.619 0.00 0.00 0.00 3.01
447 661 0.886563 AATTGCAGTGGCTCTTCAGC 59.113 50.000 0.00 0.00 46.06 4.26
465 679 2.223735 CGGAGGATTGTAGAAGCGCTAA 60.224 50.000 12.05 0.00 0.00 3.09
709 931 3.957535 CGGAATCCATGGCGCTGC 61.958 66.667 6.96 0.00 0.00 5.25
790 1012 1.228306 ACGGCCCGGATTGTTTCAA 60.228 52.632 8.57 0.00 0.00 2.69
828 1050 0.663153 GATATGAGCCGTTGGTTGCC 59.337 55.000 0.00 0.00 0.00 4.52
1102 1328 1.619977 CGGGGGAAAGAAGGAGAGAGA 60.620 57.143 0.00 0.00 0.00 3.10
1110 1336 2.215942 AATTCACCGGGGGAAAGAAG 57.784 50.000 17.01 0.00 0.00 2.85
1111 1337 2.243810 CAAATTCACCGGGGGAAAGAA 58.756 47.619 17.01 3.37 0.00 2.52
1116 1349 2.036572 GCCAAATTCACCGGGGGA 59.963 61.111 2.42 0.00 0.00 4.81
1123 1356 1.135112 GGGAATCGGTGCCAAATTCAC 60.135 52.381 0.00 7.40 37.76 3.18
1196 1429 1.830071 GCGGATCCAGTAATCCCCCTA 60.830 57.143 13.41 0.00 41.98 3.53
1218 1451 1.135972 GCAGTCGAAATCACGCAATGT 60.136 47.619 0.00 0.00 0.00 2.71
1226 1459 4.183865 CCTGAACATAGCAGTCGAAATCA 58.816 43.478 0.00 0.00 0.00 2.57
1366 1599 3.451540 AGAGGGAGACGGTAAAGAAATCC 59.548 47.826 0.00 0.00 0.00 3.01
1380 1613 3.849574 TCAGAAGAGAGAAGAGAGGGAGA 59.150 47.826 0.00 0.00 0.00 3.71
1565 1804 6.350110 GGAGCTAAATGTTTCAATGTAGGCAA 60.350 38.462 0.00 0.00 0.00 4.52
1587 1827 2.825532 CCACACCCAAATGTTAAGGGAG 59.174 50.000 3.32 0.00 45.80 4.30
1649 1889 5.706833 GGGTTTTCGTCCCAAAGAAATAGTA 59.293 40.000 0.00 0.00 44.05 1.82
1650 1890 4.521639 GGGTTTTCGTCCCAAAGAAATAGT 59.478 41.667 0.00 0.00 44.05 2.12
1651 1891 4.082408 GGGGTTTTCGTCCCAAAGAAATAG 60.082 45.833 3.37 0.00 46.26 1.73
1689 1930 5.124645 ACTGATGGATGAGATTTGCTCTTC 58.875 41.667 0.00 0.00 44.27 2.87
1690 1931 5.113446 ACTGATGGATGAGATTTGCTCTT 57.887 39.130 0.00 0.00 44.27 2.85
1692 1933 5.106634 GCATACTGATGGATGAGATTTGCTC 60.107 44.000 0.00 0.00 37.56 4.26
1765 2006 1.902508 TGTAGAGACTGCTTCCCCTTG 59.097 52.381 0.00 0.00 0.00 3.61
1854 2095 6.037610 CACTCCTGAGGCTATAAATGTCAAAC 59.962 42.308 0.00 0.00 0.00 2.93
1928 2169 0.307760 GTGCACTCCAAAACGACAGG 59.692 55.000 10.32 0.00 0.00 4.00
2035 2276 3.641434 ATGAGCAGACATTAGGCAGTT 57.359 42.857 0.00 0.00 0.00 3.16
2215 2555 3.484547 CGAACGTAGGTTGGCGGC 61.485 66.667 5.36 0.00 36.24 6.53
2489 3082 7.038659 ACACTTGTGTTTATATGAGCTCTCTC 58.961 38.462 16.19 0.00 39.78 3.20
2490 3085 6.940739 ACACTTGTGTTTATATGAGCTCTCT 58.059 36.000 16.19 4.92 0.00 3.10
2594 3189 2.754552 GCCCACTTTGCTTATGACATCA 59.245 45.455 0.00 0.00 0.00 3.07
2655 3250 7.687941 ACTTTATTGGAAATCACTACACCAG 57.312 36.000 0.00 0.00 32.16 4.00
2913 3508 7.954835 TGAAATGAAGAAGAACAATGAACCAT 58.045 30.769 0.00 0.00 0.00 3.55
3262 3861 4.320935 GGAGCAAACGATTAAAGGAAGCAA 60.321 41.667 0.00 0.00 0.00 3.91
3374 3973 7.804129 GGTATTAGAGAACATAGAACAGCGTAG 59.196 40.741 0.00 0.00 0.00 3.51
3405 4004 4.322567 ACCTGCAACAAAAACACAAACAT 58.677 34.783 0.00 0.00 0.00 2.71
3417 4016 3.306641 GGCATAATTCCAACCTGCAACAA 60.307 43.478 0.00 0.00 34.56 2.83
3555 4154 8.460831 AAGTCAAAAGTACAAAAATGTGTGAC 57.539 30.769 0.00 0.00 32.75 3.67
3574 4173 5.924356 TGTACCATCAGACAGAAAAGTCAA 58.076 37.500 0.00 0.00 40.98 3.18
3641 4240 9.686683 ACTAGGTCAGATAATTAAGCACAATTT 57.313 29.630 0.00 0.00 30.84 1.82
3642 4241 9.113838 CACTAGGTCAGATAATTAAGCACAATT 57.886 33.333 0.00 1.76 32.91 2.32
3643 4242 8.486210 TCACTAGGTCAGATAATTAAGCACAAT 58.514 33.333 0.00 0.00 0.00 2.71
3666 4265 9.209175 GATATCAAACACCTCCATAAGTATCAC 57.791 37.037 0.00 0.00 0.00 3.06
3673 4272 6.823286 TCCAGATATCAAACACCTCCATAA 57.177 37.500 5.32 0.00 0.00 1.90
3751 4350 0.109132 GGCCAAAAATGTGAGGCTCG 60.109 55.000 10.42 0.00 46.23 5.03
3760 4359 2.476126 TCATTGCAGGGCCAAAAATG 57.524 45.000 6.18 12.16 0.00 2.32
3783 4382 5.466728 ACATTCGTCCAATCAAATCGATAGG 59.533 40.000 0.00 0.00 32.51 2.57
3887 4486 5.090652 TGTTCTACAAGCGTGAACAATTC 57.909 39.130 6.65 0.00 44.44 2.17
4030 4631 1.144708 TGATTGGTGGTCAAAGGCTCA 59.855 47.619 0.00 0.00 39.05 4.26
4063 4664 3.126514 ACGTACTCCGAAGTGTCACATAG 59.873 47.826 5.62 0.00 40.70 2.23
4066 4667 1.311859 ACGTACTCCGAAGTGTCACA 58.688 50.000 5.62 0.00 40.70 3.58
4069 5170 3.820777 AAGTACGTACTCCGAAGTGTC 57.179 47.619 27.51 0.00 40.70 3.67
4072 5173 6.072508 TCACAAATAAGTACGTACTCCGAAGT 60.073 38.462 27.51 19.50 40.70 3.01
4073 5174 6.250104 GTCACAAATAAGTACGTACTCCGAAG 59.750 42.308 27.51 18.92 40.70 3.79
4074 5175 6.086222 GTCACAAATAAGTACGTACTCCGAA 58.914 40.000 27.51 14.19 40.70 4.30
4075 5176 5.181056 TGTCACAAATAAGTACGTACTCCGA 59.819 40.000 27.51 16.39 40.70 4.55
4077 5178 6.307318 CAGTGTCACAAATAAGTACGTACTCC 59.693 42.308 27.51 0.69 34.99 3.85
4078 5179 6.307318 CCAGTGTCACAAATAAGTACGTACTC 59.693 42.308 27.51 12.64 34.99 2.59
4080 5181 5.922544 ACCAGTGTCACAAATAAGTACGTAC 59.077 40.000 18.10 18.10 0.00 3.67
4081 5182 6.088016 ACCAGTGTCACAAATAAGTACGTA 57.912 37.500 5.62 0.00 0.00 3.57
4083 5184 5.917541 AACCAGTGTCACAAATAAGTACG 57.082 39.130 5.62 0.00 0.00 3.67
4114 5240 5.483811 TCAACGACCAATATGTAGCTTTCA 58.516 37.500 0.00 0.00 0.00 2.69
4125 5251 8.703604 TTTGAAAAACAATTCAACGACCAATA 57.296 26.923 2.20 0.00 46.06 1.90
4136 5262 8.687824 TGAGACAAGTCTTTGAAAAACAATTC 57.312 30.769 3.96 0.00 40.61 2.17
4179 5305 6.209391 ACCAATCAATCCTTTTCGAATCACTT 59.791 34.615 0.00 0.00 0.00 3.16
4183 5309 5.125417 TGGACCAATCAATCCTTTTCGAATC 59.875 40.000 0.00 0.00 35.86 2.52
4192 5318 3.294214 GCATTCTGGACCAATCAATCCT 58.706 45.455 0.00 0.00 35.86 3.24
4197 5323 3.018856 GACATGCATTCTGGACCAATCA 58.981 45.455 0.00 0.00 0.00 2.57
4229 5355 2.814336 GACTGGTCAAGCCCAACTAAAG 59.186 50.000 0.00 0.00 33.07 1.85
4266 5392 2.591715 AAACGGCAGCGCTTCAGT 60.592 55.556 7.50 7.24 0.00 3.41
4267 5393 2.127118 CAAACGGCAGCGCTTCAG 60.127 61.111 7.50 6.36 0.00 3.02
4268 5394 2.997952 TACCAAACGGCAGCGCTTCA 62.998 55.000 7.50 0.00 0.00 3.02
4269 5395 1.644786 ATACCAAACGGCAGCGCTTC 61.645 55.000 7.50 1.16 0.00 3.86
4270 5396 1.644786 GATACCAAACGGCAGCGCTT 61.645 55.000 7.50 0.00 0.00 4.68
4271 5397 2.046314 ATACCAAACGGCAGCGCT 60.046 55.556 2.64 2.64 0.00 5.92
4272 5398 2.403586 GATACCAAACGGCAGCGC 59.596 61.111 0.00 0.00 0.00 5.92
4273 5399 1.752501 CTCGATACCAAACGGCAGCG 61.753 60.000 0.00 0.00 0.00 5.18
4274 5400 0.459585 TCTCGATACCAAACGGCAGC 60.460 55.000 0.00 0.00 0.00 5.25
4275 5401 2.004583 TTCTCGATACCAAACGGCAG 57.995 50.000 0.00 0.00 0.00 4.85
4276 5402 2.276201 CATTCTCGATACCAAACGGCA 58.724 47.619 0.00 0.00 0.00 5.69
4277 5403 1.597663 CCATTCTCGATACCAAACGGC 59.402 52.381 0.00 0.00 0.00 5.68
4278 5404 1.597663 GCCATTCTCGATACCAAACGG 59.402 52.381 0.00 0.00 0.00 4.44
4279 5405 1.597663 GGCCATTCTCGATACCAAACG 59.402 52.381 0.00 0.00 0.00 3.60
4280 5406 1.597663 CGGCCATTCTCGATACCAAAC 59.402 52.381 2.24 0.00 0.00 2.93
4281 5407 1.948104 CGGCCATTCTCGATACCAAA 58.052 50.000 2.24 0.00 0.00 3.28
4282 5408 0.531974 GCGGCCATTCTCGATACCAA 60.532 55.000 2.24 0.00 0.00 3.67
4283 5409 1.069090 GCGGCCATTCTCGATACCA 59.931 57.895 2.24 0.00 0.00 3.25
4284 5410 1.668151 GGCGGCCATTCTCGATACC 60.668 63.158 15.62 0.00 0.00 2.73
4285 5411 1.668151 GGGCGGCCATTCTCGATAC 60.668 63.158 25.33 0.00 0.00 2.24
4286 5412 2.137528 TGGGCGGCCATTCTCGATA 61.138 57.895 29.27 0.00 0.00 2.92
4287 5413 3.479203 TGGGCGGCCATTCTCGAT 61.479 61.111 29.27 0.00 0.00 3.59
4288 5414 4.467084 GTGGGCGGCCATTCTCGA 62.467 66.667 35.05 5.79 0.00 4.04
4292 5418 3.980442 TTACGGTGGGCGGCCATTC 62.980 63.158 35.05 26.01 0.00 2.67
4293 5419 3.570822 TTTACGGTGGGCGGCCATT 62.571 57.895 35.05 22.64 0.00 3.16
4294 5420 4.036430 TTTACGGTGGGCGGCCAT 62.036 61.111 35.05 21.00 0.00 4.40
4296 5422 4.710167 AGTTTACGGTGGGCGGCC 62.710 66.667 23.42 23.42 0.00 6.13
4297 5423 3.122971 GAGTTTACGGTGGGCGGC 61.123 66.667 0.00 0.00 0.00 6.53
4298 5424 2.435410 GGAGTTTACGGTGGGCGG 60.435 66.667 0.00 0.00 0.00 6.13
4299 5425 2.812178 CGGAGTTTACGGTGGGCG 60.812 66.667 0.00 0.00 0.00 6.13
4300 5426 2.435410 CCGGAGTTTACGGTGGGC 60.435 66.667 0.00 0.00 46.03 5.36
4334 5460 3.675485 CGTGTCGCGGACAGTATG 58.325 61.111 6.13 0.00 43.57 2.39
4348 5474 3.835790 TTTCCCTGTTCCGCCCGTG 62.836 63.158 0.00 0.00 0.00 4.94
4349 5475 3.562232 TTTCCCTGTTCCGCCCGT 61.562 61.111 0.00 0.00 0.00 5.28
4350 5476 3.053896 GTTTCCCTGTTCCGCCCG 61.054 66.667 0.00 0.00 0.00 6.13
4351 5477 1.971695 CAGTTTCCCTGTTCCGCCC 60.972 63.158 0.00 0.00 36.37 6.13
4352 5478 2.626780 GCAGTTTCCCTGTTCCGCC 61.627 63.158 0.00 0.00 43.55 6.13
4353 5479 2.954611 GCAGTTTCCCTGTTCCGC 59.045 61.111 0.00 0.00 43.55 5.54
4354 5480 1.597027 ACGCAGTTTCCCTGTTCCG 60.597 57.895 0.00 0.00 37.78 4.30
4355 5481 4.475527 ACGCAGTTTCCCTGTTCC 57.524 55.556 0.00 0.00 37.78 3.62
4367 5493 2.190981 GTACCCGTAATGAGAACGCAG 58.809 52.381 0.00 0.00 39.00 5.18
4368 5494 1.545136 TGTACCCGTAATGAGAACGCA 59.455 47.619 0.00 0.00 39.00 5.24
4369 5495 1.922545 GTGTACCCGTAATGAGAACGC 59.077 52.381 0.00 0.00 39.00 4.84
4370 5496 3.498927 AGTGTACCCGTAATGAGAACG 57.501 47.619 0.00 0.00 40.01 3.95
4371 5497 5.105063 GGTTAGTGTACCCGTAATGAGAAC 58.895 45.833 0.00 0.00 31.71 3.01
4372 5498 4.771577 TGGTTAGTGTACCCGTAATGAGAA 59.228 41.667 0.00 0.00 37.39 2.87
4373 5499 4.158394 GTGGTTAGTGTACCCGTAATGAGA 59.842 45.833 0.00 0.00 37.39 3.27
4374 5500 4.427312 GTGGTTAGTGTACCCGTAATGAG 58.573 47.826 0.00 0.00 37.39 2.90
4375 5501 3.119531 CGTGGTTAGTGTACCCGTAATGA 60.120 47.826 0.00 0.00 37.39 2.57
4376 5502 3.181397 CGTGGTTAGTGTACCCGTAATG 58.819 50.000 0.00 0.00 37.39 1.90
4377 5503 2.417243 GCGTGGTTAGTGTACCCGTAAT 60.417 50.000 0.00 0.00 37.39 1.89
4378 5504 1.067915 GCGTGGTTAGTGTACCCGTAA 60.068 52.381 0.00 0.00 37.39 3.18
4379 5505 0.525761 GCGTGGTTAGTGTACCCGTA 59.474 55.000 0.00 0.00 37.39 4.02
4380 5506 1.290009 GCGTGGTTAGTGTACCCGT 59.710 57.895 0.00 0.00 37.39 5.28
4381 5507 0.108520 ATGCGTGGTTAGTGTACCCG 60.109 55.000 0.00 0.00 37.39 5.28
4382 5508 2.817901 CTATGCGTGGTTAGTGTACCC 58.182 52.381 0.00 0.00 37.39 3.69
4383 5509 2.199236 GCTATGCGTGGTTAGTGTACC 58.801 52.381 0.00 0.00 38.73 3.34
4384 5510 2.883574 TGCTATGCGTGGTTAGTGTAC 58.116 47.619 0.00 0.00 0.00 2.90
4385 5511 3.812156 ATGCTATGCGTGGTTAGTGTA 57.188 42.857 0.00 0.00 0.00 2.90
4386 5512 2.691409 ATGCTATGCGTGGTTAGTGT 57.309 45.000 0.00 0.00 0.00 3.55
4387 5513 5.673337 AATTATGCTATGCGTGGTTAGTG 57.327 39.130 0.00 0.00 0.00 2.74
4388 5514 6.990349 ACTTAATTATGCTATGCGTGGTTAGT 59.010 34.615 0.00 0.00 0.00 2.24
4389 5515 7.170828 TCACTTAATTATGCTATGCGTGGTTAG 59.829 37.037 0.00 0.00 0.00 2.34
4390 5516 6.987404 TCACTTAATTATGCTATGCGTGGTTA 59.013 34.615 0.00 0.00 0.00 2.85
4391 5517 5.820423 TCACTTAATTATGCTATGCGTGGTT 59.180 36.000 0.00 0.00 0.00 3.67
4392 5518 5.236478 GTCACTTAATTATGCTATGCGTGGT 59.764 40.000 0.00 0.00 0.00 4.16
4393 5519 5.466728 AGTCACTTAATTATGCTATGCGTGG 59.533 40.000 0.00 0.00 0.00 4.94
4394 5520 6.357980 CAGTCACTTAATTATGCTATGCGTG 58.642 40.000 0.00 0.00 0.00 5.34
4395 5521 5.466728 CCAGTCACTTAATTATGCTATGCGT 59.533 40.000 0.00 0.00 0.00 5.24
4396 5522 5.615544 GCCAGTCACTTAATTATGCTATGCG 60.616 44.000 0.00 0.00 0.00 4.73
4397 5523 5.239306 TGCCAGTCACTTAATTATGCTATGC 59.761 40.000 0.00 0.00 0.00 3.14
4398 5524 6.866010 TGCCAGTCACTTAATTATGCTATG 57.134 37.500 0.00 0.00 0.00 2.23
4399 5525 9.003658 GTAATGCCAGTCACTTAATTATGCTAT 57.996 33.333 0.00 0.00 0.00 2.97
4400 5526 7.170828 CGTAATGCCAGTCACTTAATTATGCTA 59.829 37.037 0.00 0.00 0.00 3.49
4401 5527 6.017934 CGTAATGCCAGTCACTTAATTATGCT 60.018 38.462 0.00 0.00 0.00 3.79
4402 5528 6.018262 TCGTAATGCCAGTCACTTAATTATGC 60.018 38.462 0.00 0.00 0.00 3.14
4403 5529 7.345192 GTCGTAATGCCAGTCACTTAATTATG 58.655 38.462 0.00 0.00 0.00 1.90
4404 5530 6.482308 GGTCGTAATGCCAGTCACTTAATTAT 59.518 38.462 0.00 0.00 0.00 1.28
4405 5531 5.813672 GGTCGTAATGCCAGTCACTTAATTA 59.186 40.000 0.00 0.00 0.00 1.40
4406 5532 4.634443 GGTCGTAATGCCAGTCACTTAATT 59.366 41.667 0.00 0.00 0.00 1.40
4407 5533 4.189231 GGTCGTAATGCCAGTCACTTAAT 58.811 43.478 0.00 0.00 0.00 1.40
4408 5534 3.592059 GGTCGTAATGCCAGTCACTTAA 58.408 45.455 0.00 0.00 0.00 1.85
4409 5535 2.416296 CGGTCGTAATGCCAGTCACTTA 60.416 50.000 0.00 0.00 0.00 2.24
4410 5536 1.671850 CGGTCGTAATGCCAGTCACTT 60.672 52.381 0.00 0.00 0.00 3.16
4411 5537 0.108804 CGGTCGTAATGCCAGTCACT 60.109 55.000 0.00 0.00 0.00 3.41
4412 5538 1.082117 CCGGTCGTAATGCCAGTCAC 61.082 60.000 0.00 0.00 0.00 3.67
4413 5539 1.216977 CCGGTCGTAATGCCAGTCA 59.783 57.895 0.00 0.00 0.00 3.41
4414 5540 1.520787 CCCGGTCGTAATGCCAGTC 60.521 63.158 0.00 0.00 0.00 3.51
4415 5541 2.582436 CCCGGTCGTAATGCCAGT 59.418 61.111 0.00 0.00 0.00 4.00
4416 5542 2.895372 GCCCGGTCGTAATGCCAG 60.895 66.667 0.00 0.00 0.00 4.85
4417 5543 3.673956 CTGCCCGGTCGTAATGCCA 62.674 63.158 0.00 0.00 0.00 4.92
4418 5544 2.895372 CTGCCCGGTCGTAATGCC 60.895 66.667 0.00 0.00 0.00 4.40
4419 5545 2.895372 CCTGCCCGGTCGTAATGC 60.895 66.667 0.00 0.00 0.00 3.56
4420 5546 2.895372 GCCTGCCCGGTCGTAATG 60.895 66.667 0.00 0.00 34.25 1.90
4421 5547 4.171103 GGCCTGCCCGGTCGTAAT 62.171 66.667 0.00 0.00 34.25 1.89
4426 5552 3.712907 TACTTGGCCTGCCCGGTC 61.713 66.667 3.32 0.00 38.12 4.79
4427 5553 4.029809 GTACTTGGCCTGCCCGGT 62.030 66.667 3.32 7.00 35.87 5.28
4428 5554 3.561120 TTGTACTTGGCCTGCCCGG 62.561 63.158 3.32 0.00 35.87 5.73
4429 5555 0.965363 ATTTGTACTTGGCCTGCCCG 60.965 55.000 3.32 0.00 35.87 6.13
4430 5556 0.817654 GATTTGTACTTGGCCTGCCC 59.182 55.000 3.32 0.00 34.56 5.36
4431 5557 0.451783 CGATTTGTACTTGGCCTGCC 59.548 55.000 3.32 0.00 0.00 4.85
4432 5558 0.179163 GCGATTTGTACTTGGCCTGC 60.179 55.000 3.32 0.00 0.00 4.85
4433 5559 0.451783 GGCGATTTGTACTTGGCCTG 59.548 55.000 3.32 0.00 37.57 4.85
4434 5560 0.037590 TGGCGATTTGTACTTGGCCT 59.962 50.000 3.32 0.00 41.08 5.19
4435 5561 0.170339 GTGGCGATTTGTACTTGGCC 59.830 55.000 0.00 0.00 40.88 5.36
4436 5562 0.878416 TGTGGCGATTTGTACTTGGC 59.122 50.000 0.00 0.00 0.00 4.52
4437 5563 1.135689 GCTGTGGCGATTTGTACTTGG 60.136 52.381 0.00 0.00 0.00 3.61
4438 5564 1.535028 TGCTGTGGCGATTTGTACTTG 59.465 47.619 0.00 0.00 42.25 3.16
4439 5565 1.535462 GTGCTGTGGCGATTTGTACTT 59.465 47.619 0.00 0.00 42.25 2.24
4440 5566 1.156736 GTGCTGTGGCGATTTGTACT 58.843 50.000 0.00 0.00 42.25 2.73
4441 5567 0.871722 TGTGCTGTGGCGATTTGTAC 59.128 50.000 0.00 0.00 42.25 2.90
4442 5568 0.871722 GTGTGCTGTGGCGATTTGTA 59.128 50.000 0.00 0.00 42.25 2.41
4443 5569 1.100463 TGTGTGCTGTGGCGATTTGT 61.100 50.000 0.00 0.00 42.25 2.83
4444 5570 0.386352 CTGTGTGCTGTGGCGATTTG 60.386 55.000 0.00 0.00 42.25 2.32
4445 5571 0.819259 ACTGTGTGCTGTGGCGATTT 60.819 50.000 0.00 0.00 42.25 2.17
4446 5572 0.034756 TACTGTGTGCTGTGGCGATT 59.965 50.000 0.00 0.00 42.25 3.34
4447 5573 0.670546 GTACTGTGTGCTGTGGCGAT 60.671 55.000 0.00 0.00 42.25 4.58
4448 5574 1.300620 GTACTGTGTGCTGTGGCGA 60.301 57.895 0.00 0.00 42.25 5.54
4449 5575 0.950555 ATGTACTGTGTGCTGTGGCG 60.951 55.000 0.00 0.00 42.25 5.69
4450 5576 1.732259 GTATGTACTGTGTGCTGTGGC 59.268 52.381 0.00 0.00 39.26 5.01
4451 5577 2.289382 TGGTATGTACTGTGTGCTGTGG 60.289 50.000 0.00 0.00 0.00 4.17
4452 5578 2.995939 CTGGTATGTACTGTGTGCTGTG 59.004 50.000 0.00 0.00 0.00 3.66
4453 5579 2.897326 TCTGGTATGTACTGTGTGCTGT 59.103 45.455 0.00 0.00 0.00 4.40
4454 5580 3.254060 GTCTGGTATGTACTGTGTGCTG 58.746 50.000 0.00 0.00 0.00 4.41
4455 5581 2.897326 TGTCTGGTATGTACTGTGTGCT 59.103 45.455 0.00 0.00 0.00 4.40
4456 5582 3.056821 TCTGTCTGGTATGTACTGTGTGC 60.057 47.826 0.00 0.00 0.00 4.57
4457 5583 4.738124 CTCTGTCTGGTATGTACTGTGTG 58.262 47.826 0.00 0.00 0.00 3.82
4458 5584 3.193691 GCTCTGTCTGGTATGTACTGTGT 59.806 47.826 0.00 0.00 0.00 3.72
4459 5585 3.193479 TGCTCTGTCTGGTATGTACTGTG 59.807 47.826 0.00 0.00 0.00 3.66
4460 5586 3.431415 TGCTCTGTCTGGTATGTACTGT 58.569 45.455 0.00 0.00 0.00 3.55
4461 5587 4.456280 TTGCTCTGTCTGGTATGTACTG 57.544 45.455 0.00 0.00 0.00 2.74
4462 5588 4.322801 GGTTTGCTCTGTCTGGTATGTACT 60.323 45.833 0.00 0.00 0.00 2.73
4463 5589 3.933332 GGTTTGCTCTGTCTGGTATGTAC 59.067 47.826 0.00 0.00 0.00 2.90
4464 5590 3.580895 TGGTTTGCTCTGTCTGGTATGTA 59.419 43.478 0.00 0.00 0.00 2.29
4465 5591 2.371841 TGGTTTGCTCTGTCTGGTATGT 59.628 45.455 0.00 0.00 0.00 2.29
4466 5592 3.057969 TGGTTTGCTCTGTCTGGTATG 57.942 47.619 0.00 0.00 0.00 2.39
4467 5593 3.788227 TTGGTTTGCTCTGTCTGGTAT 57.212 42.857 0.00 0.00 0.00 2.73
4468 5594 3.569194 TTTGGTTTGCTCTGTCTGGTA 57.431 42.857 0.00 0.00 0.00 3.25
4469 5595 2.435372 TTTGGTTTGCTCTGTCTGGT 57.565 45.000 0.00 0.00 0.00 4.00
4470 5596 2.544486 GCTTTTGGTTTGCTCTGTCTGG 60.544 50.000 0.00 0.00 0.00 3.86
4471 5597 2.360165 AGCTTTTGGTTTGCTCTGTCTG 59.640 45.455 0.00 0.00 30.41 3.51
4472 5598 2.659428 AGCTTTTGGTTTGCTCTGTCT 58.341 42.857 0.00 0.00 30.41 3.41
4473 5599 4.479619 CATAGCTTTTGGTTTGCTCTGTC 58.520 43.478 0.00 0.00 38.15 3.51
4474 5600 3.305608 GCATAGCTTTTGGTTTGCTCTGT 60.306 43.478 0.00 0.00 46.29 3.41
4475 5601 3.248266 GCATAGCTTTTGGTTTGCTCTG 58.752 45.455 0.00 0.00 46.29 3.35
4476 5602 3.582714 GCATAGCTTTTGGTTTGCTCT 57.417 42.857 0.00 0.00 46.29 4.09
4480 5606 3.490526 GTGTGTGCATAGCTTTTGGTTTG 59.509 43.478 0.00 0.00 33.17 2.93
4481 5607 3.716601 GTGTGTGCATAGCTTTTGGTTT 58.283 40.909 0.00 0.00 0.00 3.27
4482 5608 2.287547 CGTGTGTGCATAGCTTTTGGTT 60.288 45.455 0.00 0.00 0.00 3.67
4483 5609 1.266718 CGTGTGTGCATAGCTTTTGGT 59.733 47.619 0.00 0.00 0.00 3.67
4484 5610 1.967762 CGTGTGTGCATAGCTTTTGG 58.032 50.000 0.00 0.00 0.00 3.28
4485 5611 1.330306 GCGTGTGTGCATAGCTTTTG 58.670 50.000 0.00 0.00 34.15 2.44
4486 5612 0.110238 CGCGTGTGTGCATAGCTTTT 60.110 50.000 0.00 0.00 34.15 2.27
4487 5613 1.497278 CGCGTGTGTGCATAGCTTT 59.503 52.632 0.00 0.00 34.15 3.51
4488 5614 3.168271 CGCGTGTGTGCATAGCTT 58.832 55.556 0.00 0.00 34.15 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.