Multiple sequence alignment - TraesCS7B01G065100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7B01G065100
chr7B
100.000
2756
0
0
1
2756
70522217
70519462
0.000000e+00
5090.0
1
TraesCS7B01G065100
chr7B
93.182
44
3
0
2707
2750
70489934
70489891
6.370000e-07
65.8
2
TraesCS7B01G065100
chr7A
84.232
1725
146
62
353
2026
116125509
116123860
0.000000e+00
1563.0
3
TraesCS7B01G065100
chr7A
85.603
257
12
8
2101
2342
116123828
116123582
2.120000e-61
246.0
4
TraesCS7B01G065100
chr7A
94.000
150
9
0
2391
2540
116123578
116123429
7.680000e-56
228.0
5
TraesCS7B01G065100
chr7A
91.892
148
11
1
3
150
116125840
116125694
3.600000e-49
206.0
6
TraesCS7B01G065100
chr7A
85.833
120
1
3
2632
2746
116123014
116122906
2.240000e-21
113.0
7
TraesCS7B01G065100
chr7D
84.844
1280
112
44
733
1960
111059673
111058424
0.000000e+00
1214.0
8
TraesCS7B01G065100
chr7D
85.714
357
11
15
2072
2417
111058293
111057966
9.450000e-90
340.0
9
TraesCS7B01G065100
chr7D
92.683
123
3
3
2634
2750
111057873
111057751
3.650000e-39
172.0
10
TraesCS7B01G065100
chr7D
78.431
255
47
5
352
604
111061620
111061372
2.840000e-35
159.0
11
TraesCS7B01G065100
chr7D
90.722
97
9
0
2385
2481
111057961
111057865
2.230000e-26
130.0
12
TraesCS7B01G065100
chr6B
78.125
160
33
2
347
505
15882083
15882241
1.750000e-17
100.0
13
TraesCS7B01G065100
chr2D
80.952
84
15
1
354
436
268900411
268900328
6.370000e-07
65.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7B01G065100
chr7B
70519462
70522217
2755
True
5090.0
5090
100.0000
1
2756
1
chr7B.!!$R2
2755
1
TraesCS7B01G065100
chr7A
116122906
116125840
2934
True
471.2
1563
88.3120
3
2746
5
chr7A.!!$R1
2743
2
TraesCS7B01G065100
chr7D
111057751
111061620
3869
True
403.0
1214
86.4788
352
2750
5
chr7D.!!$R1
2398
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
313
351
0.041663
ATAAACGCACACGCACACAC
60.042
50.0
0.0
0.0
45.53
3.82
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2130
3884
0.104855
TAGGTGAGGCACATCATCGC
59.895
55.0
0.0
0.0
35.37
4.58
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
58
59
0.172803
ACGATCCCTAACTGACGTGC
59.827
55.000
0.00
0.00
32.93
5.34
78
79
2.002586
CCACAAAGACTCGGCTATGTG
58.997
52.381
0.00
0.00
38.25
3.21
81
82
0.613260
AAAGACTCGGCTATGTGGCA
59.387
50.000
0.00
0.00
41.89
4.92
91
92
1.917273
CTATGTGGCATGCAACAAGC
58.083
50.000
30.83
7.23
45.96
4.01
92
93
1.475280
CTATGTGGCATGCAACAAGCT
59.525
47.619
30.83
17.61
45.94
3.74
93
94
0.682852
ATGTGGCATGCAACAAGCTT
59.317
45.000
30.83
12.61
45.94
3.74
99
100
4.213906
GTGGCATGCAACAAGCTTTTTAAT
59.786
37.500
20.70
0.00
45.94
1.40
106
107
4.984161
GCAACAAGCTTTTTAATCAGCTCA
59.016
37.500
8.89
0.00
46.01
4.26
113
114
6.567959
AGCTTTTTAATCAGCTCAAATAGGC
58.432
36.000
3.56
0.00
43.12
3.93
140
141
1.538950
CCTTGCAACAGAGCTCTTTCC
59.461
52.381
15.27
3.54
34.99
3.13
174
212
2.469736
GCTCAATGATGGGCGACTAGC
61.470
57.143
0.00
0.00
44.59
3.42
186
224
0.392998
CGACTAGCAGGTTTGGGCAT
60.393
55.000
0.00
0.00
0.00
4.40
190
228
1.490490
CTAGCAGGTTTGGGCATAGGA
59.510
52.381
0.00
0.00
0.00
2.94
195
233
2.231716
GGTTTGGGCATAGGAACCTT
57.768
50.000
0.00
0.00
38.74
3.50
200
238
0.831307
GGGCATAGGAACCTTCGAGT
59.169
55.000
0.00
0.00
0.00
4.18
210
248
3.244112
GGAACCTTCGAGTTCTCTTGGAA
60.244
47.826
14.87
1.22
44.56
3.53
214
252
4.223923
ACCTTCGAGTTCTCTTGGAATGAT
59.776
41.667
8.62
0.00
36.24
2.45
218
256
3.118629
CGAGTTCTCTTGGAATGATCCCA
60.119
47.826
0.00
0.00
45.95
4.37
225
263
5.039920
TCTTGGAATGATCCCATGTACAG
57.960
43.478
0.33
0.00
45.95
2.74
226
264
4.474651
TCTTGGAATGATCCCATGTACAGT
59.525
41.667
0.33
0.00
45.95
3.55
259
297
9.653067
TTTGTTTGTTTTATCACAGTACATACG
57.347
29.630
0.00
0.00
0.00
3.06
260
298
7.292292
TGTTTGTTTTATCACAGTACATACGC
58.708
34.615
0.00
0.00
0.00
4.42
264
302
7.039270
TGTTTTATCACAGTACATACGCAGAT
58.961
34.615
0.00
0.00
0.00
2.90
266
304
4.655762
ATCACAGTACATACGCAGATGT
57.344
40.909
5.83
5.83
42.68
3.06
277
315
6.512297
ACATACGCAGATGTTCATACATACA
58.488
36.000
0.00
0.00
44.90
2.29
278
316
6.983890
ACATACGCAGATGTTCATACATACAA
59.016
34.615
0.00
0.00
44.90
2.41
279
317
7.494298
ACATACGCAGATGTTCATACATACAAA
59.506
33.333
0.00
0.00
44.90
2.83
280
318
6.925610
ACGCAGATGTTCATACATACAAAT
57.074
33.333
0.00
0.00
44.90
2.32
283
321
9.705290
ACGCAGATGTTCATACATACAAATATA
57.295
29.630
0.00
0.00
44.90
0.86
284
322
9.958285
CGCAGATGTTCATACATACAAATATAC
57.042
33.333
0.00
0.00
44.90
1.47
304
342
9.767228
AATATACACTAACCATATAAACGCACA
57.233
29.630
0.00
0.00
0.00
4.57
305
343
5.789710
ACACTAACCATATAAACGCACAC
57.210
39.130
0.00
0.00
0.00
3.82
307
345
2.817538
AACCATATAAACGCACACGC
57.182
45.000
0.00
0.00
45.53
5.34
308
346
1.728068
ACCATATAAACGCACACGCA
58.272
45.000
0.00
0.00
45.53
5.24
309
347
1.395608
ACCATATAAACGCACACGCAC
59.604
47.619
0.00
0.00
45.53
5.34
310
348
1.395262
CCATATAAACGCACACGCACA
59.605
47.619
0.00
0.00
45.53
4.57
311
349
2.427169
CATATAAACGCACACGCACAC
58.573
47.619
0.00
0.00
45.53
3.82
312
350
1.499049
TATAAACGCACACGCACACA
58.501
45.000
0.00
0.00
45.53
3.72
313
351
0.041663
ATAAACGCACACGCACACAC
60.042
50.000
0.00
0.00
45.53
3.82
314
352
1.359459
TAAACGCACACGCACACACA
61.359
50.000
0.00
0.00
45.53
3.72
315
353
2.842588
AAACGCACACGCACACACAC
62.843
55.000
0.00
0.00
45.53
3.82
316
354
3.858989
CGCACACGCACACACACA
61.859
61.111
0.00
0.00
38.40
3.72
317
355
2.277247
GCACACGCACACACACAC
60.277
61.111
0.00
0.00
38.36
3.82
318
356
3.033166
GCACACGCACACACACACA
62.033
57.895
0.00
0.00
38.36
3.72
319
357
1.225991
CACACGCACACACACACAC
60.226
57.895
0.00
0.00
0.00
3.82
320
358
1.669437
ACACGCACACACACACACA
60.669
52.632
0.00
0.00
0.00
3.72
321
359
1.225991
CACGCACACACACACACAC
60.226
57.895
0.00
0.00
0.00
3.82
322
360
1.669437
ACGCACACACACACACACA
60.669
52.632
0.00
0.00
0.00
3.72
323
361
1.225991
CGCACACACACACACACAC
60.226
57.895
0.00
0.00
0.00
3.82
324
362
1.872468
GCACACACACACACACACA
59.128
52.632
0.00
0.00
0.00
3.72
325
363
0.454285
GCACACACACACACACACAC
60.454
55.000
0.00
0.00
0.00
3.82
326
364
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
327
365
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
328
366
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
329
367
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
330
368
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
331
369
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
332
370
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
333
371
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
334
372
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
335
373
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
336
374
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
337
375
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
338
376
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
339
377
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
340
378
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
341
379
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
342
380
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
343
381
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
344
382
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
345
383
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
346
384
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
347
385
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
348
386
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
349
387
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
350
388
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
358
396
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
362
400
2.739379
CACACACACACACACACACTAA
59.261
45.455
0.00
0.00
0.00
2.24
366
404
1.305201
CACACACACACACTAACCCC
58.695
55.000
0.00
0.00
0.00
4.95
377
415
0.620556
ACTAACCCCATGAGCACCTG
59.379
55.000
0.00
0.00
0.00
4.00
393
431
0.103208
CCTGCGAGAGATAAAGCCGT
59.897
55.000
0.00
0.00
0.00
5.68
411
449
4.100035
AGCCGTCACATCATCTTGAGATTA
59.900
41.667
0.00
0.00
31.21
1.75
413
451
5.468072
GCCGTCACATCATCTTGAGATTAAT
59.532
40.000
0.00
0.00
31.21
1.40
433
471
0.107654
GAAGTCACCATAGGCGCCTT
60.108
55.000
37.74
19.80
0.00
4.35
437
475
2.173669
CACCATAGGCGCCTTCGTG
61.174
63.158
37.74
30.42
38.14
4.35
482
520
1.153353
GAACGAGCATCACCCGAAAA
58.847
50.000
0.00
0.00
33.17
2.29
489
527
1.818674
GCATCACCCGAAAACCTGAAT
59.181
47.619
0.00
0.00
0.00
2.57
509
547
7.545265
CCTGAATTAAATCCAGAAAAATGCGAA
59.455
33.333
0.00
0.00
0.00
4.70
513
551
4.853924
AATCCAGAAAAATGCGAACAGT
57.146
36.364
0.00
0.00
0.00
3.55
519
557
5.920273
CCAGAAAAATGCGAACAGTAATGTT
59.080
36.000
8.54
8.54
34.29
2.71
525
563
3.403968
TGCGAACAGTAATGTTAAGCCA
58.596
40.909
23.79
14.21
35.85
4.75
531
569
4.332828
ACAGTAATGTTAAGCCAAGGACC
58.667
43.478
0.00
0.00
0.00
4.46
540
578
3.612795
AAGCCAAGGACCTAAACCTTT
57.387
42.857
0.00
0.00
44.13
3.11
543
581
2.755208
GCCAAGGACCTAAACCTTTGGT
60.755
50.000
7.75
0.00
44.13
3.67
545
583
2.890945
CAAGGACCTAAACCTTTGGTGG
59.109
50.000
0.00
0.00
44.13
4.61
548
586
2.423803
GGACCTAAACCTTTGGTGGTGT
60.424
50.000
2.54
0.00
40.73
4.16
550
588
1.339929
CCTAAACCTTTGGTGGTGTGC
59.660
52.381
0.00
0.00
40.73
4.57
552
590
2.445682
AAACCTTTGGTGGTGTGCTA
57.554
45.000
0.00
0.00
40.73
3.49
553
591
1.981256
AACCTTTGGTGGTGTGCTAG
58.019
50.000
0.00
0.00
40.73
3.42
554
592
0.843984
ACCTTTGGTGGTGTGCTAGT
59.156
50.000
0.00
0.00
39.17
2.57
555
593
1.214424
ACCTTTGGTGGTGTGCTAGTT
59.786
47.619
0.00
0.00
39.17
2.24
556
594
2.306847
CCTTTGGTGGTGTGCTAGTTT
58.693
47.619
0.00
0.00
0.00
2.66
557
595
2.293399
CCTTTGGTGGTGTGCTAGTTTC
59.707
50.000
0.00
0.00
0.00
2.78
558
596
1.588674
TTGGTGGTGTGCTAGTTTCG
58.411
50.000
0.00
0.00
0.00
3.46
559
597
0.466543
TGGTGGTGTGCTAGTTTCGT
59.533
50.000
0.00
0.00
0.00
3.85
601
640
1.355066
GCTAGGCTCAGTTCGCACAC
61.355
60.000
0.00
0.00
0.00
3.82
615
654
4.624336
TCGCACACTGTAATTTGTTTGT
57.376
36.364
0.00
0.00
0.00
2.83
621
660
7.108005
GCACACTGTAATTTGTTTGTTAAACG
58.892
34.615
0.00
0.00
44.28
3.60
642
681
6.707599
ACGAACATGAGCTAGTTCTTTAAC
57.292
37.500
18.38
0.00
41.40
2.01
648
687
8.220755
ACATGAGCTAGTTCTTTAACAAAACA
57.779
30.769
8.15
0.00
38.12
2.83
715
2347
2.551032
CACGTAGCATATACCTCCACGA
59.449
50.000
0.00
0.00
0.00
4.35
717
2349
3.072211
CGTAGCATATACCTCCACGAGA
58.928
50.000
0.00
0.00
0.00
4.04
720
2352
2.158445
AGCATATACCTCCACGAGACCT
60.158
50.000
0.00
0.00
0.00
3.85
721
2353
2.628657
GCATATACCTCCACGAGACCTT
59.371
50.000
0.00
0.00
0.00
3.50
722
2354
3.305471
GCATATACCTCCACGAGACCTTC
60.305
52.174
0.00
0.00
0.00
3.46
723
2355
2.526888
ATACCTCCACGAGACCTTCA
57.473
50.000
0.00
0.00
0.00
3.02
724
2356
2.297698
TACCTCCACGAGACCTTCAA
57.702
50.000
0.00
0.00
0.00
2.69
725
2357
0.969894
ACCTCCACGAGACCTTCAAG
59.030
55.000
0.00
0.00
0.00
3.02
726
2358
0.247736
CCTCCACGAGACCTTCAAGG
59.752
60.000
0.22
0.22
42.49
3.61
727
2359
0.247736
CTCCACGAGACCTTCAAGGG
59.752
60.000
8.75
0.00
40.58
3.95
728
2360
0.178944
TCCACGAGACCTTCAAGGGA
60.179
55.000
8.75
0.00
40.58
4.20
729
2361
0.247736
CCACGAGACCTTCAAGGGAG
59.752
60.000
8.75
0.00
40.58
4.30
730
2362
0.247736
CACGAGACCTTCAAGGGAGG
59.752
60.000
8.75
0.00
40.58
4.30
731
2363
1.219393
CGAGACCTTCAAGGGAGGC
59.781
63.158
8.75
0.00
40.58
4.70
732
2364
1.604915
GAGACCTTCAAGGGAGGCC
59.395
63.158
8.75
0.00
40.58
5.19
733
2365
1.916206
GAGACCTTCAAGGGAGGCCC
61.916
65.000
8.75
0.00
45.90
5.80
1019
2665
2.047465
CCAGACGCAAGCAGAGCT
60.047
61.111
0.00
0.00
42.56
4.09
1021
2667
1.373873
CAGACGCAAGCAGAGCTGA
60.374
57.895
0.85
0.00
39.62
4.26
1234
2903
1.138047
GCCGTCGTCCACTGTTATCG
61.138
60.000
0.00
0.00
0.00
2.92
1308
2983
1.652012
GGAGACGGAGAGATCGCTG
59.348
63.158
2.76
0.00
0.00
5.18
1330
3005
0.030638
GAGCTGGAGATCGTCTGAGC
59.969
60.000
0.00
0.00
33.22
4.26
1519
3203
1.553690
CGAATGGGAGGTGGTGAGGT
61.554
60.000
0.00
0.00
0.00
3.85
1521
3205
0.475632
AATGGGAGGTGGTGAGGTCA
60.476
55.000
0.00
0.00
0.00
4.02
1526
3210
2.032681
GGTGGTGAGGTCACTGCC
59.967
66.667
9.90
8.48
45.73
4.85
1527
3211
2.520536
GGTGGTGAGGTCACTGCCT
61.521
63.158
9.90
0.00
45.73
4.75
1546
3236
3.964221
CTCGCGGCGACAACTGCTA
62.964
63.158
22.69
0.00
39.92
3.49
1547
3237
3.838795
CGCGGCGACAACTGCTAC
61.839
66.667
19.16
0.00
39.92
3.58
1549
3239
3.179265
CGGCGACAACTGCTACGG
61.179
66.667
0.00
0.00
0.00
4.02
1550
3240
2.813908
GGCGACAACTGCTACGGG
60.814
66.667
0.00
0.00
0.00
5.28
1551
3241
2.260434
GCGACAACTGCTACGGGA
59.740
61.111
0.00
0.00
0.00
5.14
1552
3242
1.373748
GCGACAACTGCTACGGGAA
60.374
57.895
0.00
0.00
0.00
3.97
1553
3243
1.623973
GCGACAACTGCTACGGGAAC
61.624
60.000
0.00
0.00
0.00
3.62
1565
3255
2.030862
GGGAACGTGGCGGTACAA
59.969
61.111
0.00
0.00
0.00
2.41
1609
3299
4.720902
TGGTGCGGCTGTGGGATG
62.721
66.667
0.00
0.00
0.00
3.51
1695
3388
2.525055
GTGTCGAGCTTCTGATCACTC
58.475
52.381
0.00
0.00
0.00
3.51
1696
3389
2.095008
GTGTCGAGCTTCTGATCACTCA
60.095
50.000
10.62
0.00
0.00
3.41
1698
3391
3.005791
TGTCGAGCTTCTGATCACTCAAA
59.994
43.478
10.62
0.00
0.00
2.69
1699
3392
3.611986
GTCGAGCTTCTGATCACTCAAAG
59.388
47.826
10.62
5.36
0.00
2.77
1701
3394
2.677337
GAGCTTCTGATCACTCAAAGCC
59.323
50.000
17.34
9.80
41.41
4.35
1710
3403
1.416030
TCACTCAAAGCCACTGTAGCA
59.584
47.619
0.29
0.00
0.00
3.49
1711
3404
2.038952
TCACTCAAAGCCACTGTAGCAT
59.961
45.455
0.29
0.00
0.00
3.79
1712
3405
2.816087
CACTCAAAGCCACTGTAGCATT
59.184
45.455
0.29
0.00
0.00
3.56
1713
3406
2.816087
ACTCAAAGCCACTGTAGCATTG
59.184
45.455
9.36
9.36
39.60
2.82
1715
3408
3.221771
TCAAAGCCACTGTAGCATTGTT
58.778
40.909
13.96
0.00
39.34
2.83
1716
3409
3.636300
TCAAAGCCACTGTAGCATTGTTT
59.364
39.130
13.96
0.00
39.34
2.83
1718
3411
3.146104
AGCCACTGTAGCATTGTTTCT
57.854
42.857
0.29
0.00
0.00
2.52
1719
3412
3.490348
AGCCACTGTAGCATTGTTTCTT
58.510
40.909
0.29
0.00
0.00
2.52
1722
3415
4.022849
GCCACTGTAGCATTGTTTCTTTCT
60.023
41.667
0.00
0.00
0.00
2.52
1726
3419
8.134895
CCACTGTAGCATTGTTTCTTTCTTTTA
58.865
33.333
0.00
0.00
0.00
1.52
1754
3447
7.818930
TCTGGAAGAATGAAATTGGCAATAAAC
59.181
33.333
14.05
8.48
42.31
2.01
1821
3524
1.270839
GCCGATGTACCCTGCACATAT
60.271
52.381
0.00
0.00
36.76
1.78
1836
3539
7.143340
CCTGCACATATAATGTTTTCATCCAG
58.857
38.462
0.00
0.00
42.70
3.86
1837
3540
7.201848
CCTGCACATATAATGTTTTCATCCAGT
60.202
37.037
0.00
0.00
42.70
4.00
1840
3543
7.859377
GCACATATAATGTTTTCATCCAGTCAG
59.141
37.037
0.00
0.00
42.70
3.51
1862
3565
4.397417
AGATCAGTTATTGCTTGCAACTCC
59.603
41.667
10.37
1.61
30.20
3.85
1865
3573
3.254166
CAGTTATTGCTTGCAACTCCAGT
59.746
43.478
10.37
0.00
30.20
4.00
1878
3586
4.709840
CCAGTTCCTCTGCTGGTG
57.290
61.111
2.66
0.00
45.28
4.17
1879
3587
1.673665
CCAGTTCCTCTGCTGGTGC
60.674
63.158
2.66
0.00
45.28
5.01
1881
3589
0.954449
CAGTTCCTCTGCTGGTGCTG
60.954
60.000
0.00
0.00
40.48
4.41
1884
3592
1.203441
TTCCTCTGCTGGTGCTGGAT
61.203
55.000
0.00
0.00
40.48
3.41
1886
3594
2.045634
TCTGCTGGTGCTGGATGC
60.046
61.111
0.00
0.00
40.48
3.91
1887
3595
3.138798
CTGCTGGTGCTGGATGCC
61.139
66.667
0.00
0.00
42.00
4.40
1888
3596
4.746309
TGCTGGTGCTGGATGCCC
62.746
66.667
0.00
0.00
42.00
5.36
1889
3597
4.746309
GCTGGTGCTGGATGCCCA
62.746
66.667
0.00
0.00
42.00
5.36
1890
3598
2.036098
CTGGTGCTGGATGCCCAA
59.964
61.111
0.00
0.00
42.98
4.12
1891
3599
2.283101
TGGTGCTGGATGCCCAAC
60.283
61.111
0.00
0.00
42.98
3.77
1892
3600
3.443045
GGTGCTGGATGCCCAACG
61.443
66.667
0.00
0.00
42.98
4.10
1893
3601
2.359850
GTGCTGGATGCCCAACGA
60.360
61.111
0.00
0.00
42.98
3.85
1894
3602
2.359850
TGCTGGATGCCCAACGAC
60.360
61.111
0.00
0.00
42.98
4.34
1904
3617
2.972505
CCAACGACACGCCTTGCT
60.973
61.111
0.00
0.00
0.00
3.91
1907
3620
0.370273
CAACGACACGCCTTGCTATC
59.630
55.000
0.00
0.00
0.00
2.08
1909
3622
0.458543
ACGACACGCCTTGCTATCTG
60.459
55.000
0.00
0.00
0.00
2.90
1910
3623
0.458543
CGACACGCCTTGCTATCTGT
60.459
55.000
0.00
0.00
0.00
3.41
1911
3624
1.002366
GACACGCCTTGCTATCTGTG
58.998
55.000
0.00
0.00
0.00
3.66
1922
3635
2.632512
TGCTATCTGTGACACCTGTTGA
59.367
45.455
2.45
0.00
0.00
3.18
1923
3636
3.261643
TGCTATCTGTGACACCTGTTGAT
59.738
43.478
2.45
2.46
0.00
2.57
1940
3656
6.529125
CCTGTTGATTTGCAAATGCTAGTTAG
59.471
38.462
28.67
15.49
42.66
2.34
1941
3657
6.389091
TGTTGATTTGCAAATGCTAGTTAGG
58.611
36.000
28.67
0.00
42.66
2.69
1963
3679
2.947652
CCATTGGCAGTAACAGAGATGG
59.052
50.000
0.00
0.00
0.00
3.51
1973
3692
2.238084
ACAGAGATGGCTACCAGTGA
57.762
50.000
0.00
0.00
36.75
3.41
1996
3750
3.797039
GCCAAAAGCTTATTTCCCCATC
58.203
45.455
0.00
0.00
38.99
3.51
1997
3751
3.197549
GCCAAAAGCTTATTTCCCCATCA
59.802
43.478
0.00
0.00
38.99
3.07
2006
3760
0.112995
TTTCCCCATCACTGCAGCTT
59.887
50.000
15.27
0.00
0.00
3.74
2010
3764
2.777114
TCCCCATCACTGCAGCTTATTA
59.223
45.455
15.27
0.00
0.00
0.98
2012
3766
3.434167
CCCCATCACTGCAGCTTATTACT
60.434
47.826
15.27
0.00
0.00
2.24
2021
3775
5.180117
ACTGCAGCTTATTACTTGTTGACAG
59.820
40.000
15.27
0.00
0.00
3.51
2026
3780
6.744537
CAGCTTATTACTTGTTGACAGAATGC
59.255
38.462
0.00
0.00
42.53
3.56
2028
3782
6.963805
GCTTATTACTTGTTGACAGAATGCTC
59.036
38.462
0.00
0.00
42.53
4.26
2029
3783
7.361201
GCTTATTACTTGTTGACAGAATGCTCA
60.361
37.037
0.00
0.00
42.53
4.26
2031
3785
2.551459
ACTTGTTGACAGAATGCTCAGC
59.449
45.455
0.00
0.00
42.53
4.26
2032
3786
2.556144
TGTTGACAGAATGCTCAGCT
57.444
45.000
0.00
0.00
42.53
4.24
2033
3787
2.854963
TGTTGACAGAATGCTCAGCTT
58.145
42.857
0.00
0.00
42.53
3.74
2034
3788
4.006780
TGTTGACAGAATGCTCAGCTTA
57.993
40.909
0.00
0.00
42.53
3.09
2035
3789
4.582869
TGTTGACAGAATGCTCAGCTTAT
58.417
39.130
0.00
0.00
42.53
1.73
2036
3790
5.005740
TGTTGACAGAATGCTCAGCTTATT
58.994
37.500
0.00
0.00
42.53
1.40
2039
3793
5.118990
TGACAGAATGCTCAGCTTATTACC
58.881
41.667
0.00
0.00
42.53
2.85
2049
3803
4.501071
TCAGCTTATTACCTGACGTTTCC
58.499
43.478
0.00
0.00
33.44
3.13
2053
3807
4.504858
CTTATTACCTGACGTTTCCTGCT
58.495
43.478
0.00
0.00
0.00
4.24
2055
3809
3.587797
TTACCTGACGTTTCCTGCTAG
57.412
47.619
0.00
0.00
0.00
3.42
2056
3810
0.037232
ACCTGACGTTTCCTGCTAGC
60.037
55.000
8.10
8.10
0.00
3.42
2057
3811
0.247736
CCTGACGTTTCCTGCTAGCT
59.752
55.000
17.23
0.00
0.00
3.32
2059
3813
2.094182
CCTGACGTTTCCTGCTAGCTAA
60.094
50.000
17.23
4.98
0.00
3.09
2062
3816
3.194755
TGACGTTTCCTGCTAGCTAATCA
59.805
43.478
17.23
6.10
0.00
2.57
2063
3817
3.522553
ACGTTTCCTGCTAGCTAATCAC
58.477
45.455
17.23
6.57
0.00
3.06
2064
3818
3.056107
ACGTTTCCTGCTAGCTAATCACA
60.056
43.478
17.23
0.00
0.00
3.58
2065
3819
3.307242
CGTTTCCTGCTAGCTAATCACAC
59.693
47.826
17.23
3.43
0.00
3.82
2066
3820
4.253685
GTTTCCTGCTAGCTAATCACACA
58.746
43.478
17.23
0.00
0.00
3.72
2067
3821
4.760530
TTCCTGCTAGCTAATCACACAT
57.239
40.909
17.23
0.00
0.00
3.21
2068
3822
4.760530
TCCTGCTAGCTAATCACACATT
57.239
40.909
17.23
0.00
0.00
2.71
2069
3823
4.697514
TCCTGCTAGCTAATCACACATTC
58.302
43.478
17.23
0.00
0.00
2.67
2070
3824
4.162131
TCCTGCTAGCTAATCACACATTCA
59.838
41.667
17.23
0.00
0.00
2.57
2071
3825
4.272018
CCTGCTAGCTAATCACACATTCAC
59.728
45.833
17.23
0.00
0.00
3.18
2072
3826
4.831107
TGCTAGCTAATCACACATTCACA
58.169
39.130
17.23
0.00
0.00
3.58
2073
3827
4.631377
TGCTAGCTAATCACACATTCACAC
59.369
41.667
17.23
0.00
0.00
3.82
2074
3828
4.872691
GCTAGCTAATCACACATTCACACT
59.127
41.667
7.70
0.00
0.00
3.55
2075
3829
5.220548
GCTAGCTAATCACACATTCACACTG
60.221
44.000
7.70
0.00
0.00
3.66
2076
3830
4.005650
AGCTAATCACACATTCACACTGG
58.994
43.478
0.00
0.00
0.00
4.00
2077
3831
4.002982
GCTAATCACACATTCACACTGGA
58.997
43.478
0.00
0.00
0.00
3.86
2078
3832
4.455533
GCTAATCACACATTCACACTGGAA
59.544
41.667
0.00
0.00
0.00
3.53
2079
3833
4.836125
AATCACACATTCACACTGGAAC
57.164
40.909
0.00
0.00
0.00
3.62
2284
4058
3.243367
CCAACAAATTCACCACACGACAT
60.243
43.478
0.00
0.00
0.00
3.06
2302
4076
2.172483
ATCGTGCCAGGACAGGACAC
62.172
60.000
8.01
0.00
37.28
3.67
2319
4093
3.433748
CGACTCCGTGAACGAACG
58.566
61.111
4.03
0.00
43.02
3.95
2327
4101
1.827315
CGTGAACGAACGCCACATGT
61.827
55.000
15.88
0.00
43.02
3.21
2332
4106
1.733041
CGAACGCCACATGTCTCGT
60.733
57.895
14.11
14.11
36.67
4.18
2385
4196
2.664916
GTAACCGTACGTCAAGCTGAA
58.335
47.619
15.21
0.00
0.00
3.02
2387
4198
0.672342
ACCGTACGTCAAGCTGAAGT
59.328
50.000
15.21
8.99
41.68
3.01
2498
4309
0.881118
CCTGCAGTTAACGTTGCCAT
59.119
50.000
13.81
0.00
39.54
4.40
2508
4319
2.049248
GTTGCCATGGTTGGTGCG
60.049
61.111
14.67
0.00
45.57
5.34
2540
4351
1.295357
TTGGGTGCGACATTACTGCG
61.295
55.000
0.00
0.00
0.00
5.18
2541
4352
1.740296
GGGTGCGACATTACTGCGT
60.740
57.895
0.00
0.00
0.00
5.24
2544
4355
1.625616
GTGCGACATTACTGCGTACT
58.374
50.000
0.00
0.00
35.94
2.73
2545
4356
2.478370
GGTGCGACATTACTGCGTACTA
60.478
50.000
13.69
0.00
37.52
1.82
2546
4357
2.529090
GTGCGACATTACTGCGTACTAC
59.471
50.000
0.00
0.00
35.94
2.73
2547
4358
1.771848
GCGACATTACTGCGTACTACG
59.228
52.381
4.12
4.12
45.88
3.51
2548
4359
2.789092
GCGACATTACTGCGTACTACGT
60.789
50.000
10.23
0.00
44.73
3.57
2549
4360
3.544048
GCGACATTACTGCGTACTACGTA
60.544
47.826
10.23
4.91
44.73
3.57
2550
4361
3.956305
CGACATTACTGCGTACTACGTAC
59.044
47.826
10.23
0.00
44.73
3.67
2559
4370
2.619013
GTACTACGTACGTGTGCCTT
57.381
50.000
30.25
10.24
29.20
4.35
2561
4372
1.774639
ACTACGTACGTGTGCCTTTG
58.225
50.000
30.25
11.75
0.00
2.77
2563
4374
1.276820
TACGTACGTGTGCCTTTGCG
61.277
55.000
30.25
0.00
41.78
4.85
2564
4375
2.554272
GTACGTGTGCCTTTGCGG
59.446
61.111
0.00
0.00
41.78
5.69
2565
4376
2.666862
TACGTGTGCCTTTGCGGG
60.667
61.111
0.00
0.00
41.78
6.13
2588
4707
2.433318
GCGGCTCGAGCTTGAAGT
60.433
61.111
34.46
0.00
41.70
3.01
2592
4711
0.739112
GGCTCGAGCTTGAAGTGAGG
60.739
60.000
34.46
0.00
41.70
3.86
2593
4712
0.739112
GCTCGAGCTTGAAGTGAGGG
60.739
60.000
29.88
0.00
38.21
4.30
2597
4716
1.433534
GAGCTTGAAGTGAGGGTTCG
58.566
55.000
0.00
0.00
0.00
3.95
2624
4743
4.657824
CCGCTTGACACCGACGGT
62.658
66.667
15.37
15.37
39.05
4.83
2751
4890
4.112341
CAGGACGGACGGACGGAC
62.112
72.222
6.00
0.00
38.39
4.79
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
1.031571
TGGTGCCGCCATCTTCATTC
61.032
55.000
0.00
0.00
43.61
2.67
1
2
1.001020
TGGTGCCGCCATCTTCATT
60.001
52.632
0.00
0.00
43.61
2.57
48
49
1.014352
GTCTTTGTGGCACGTCAGTT
58.986
50.000
13.77
0.00
0.00
3.16
53
54
1.594293
CCGAGTCTTTGTGGCACGT
60.594
57.895
13.77
0.00
32.68
4.49
58
59
2.002586
CACATAGCCGAGTCTTTGTGG
58.997
52.381
11.76
0.00
40.19
4.17
78
79
4.451774
TGATTAAAAAGCTTGTTGCATGCC
59.548
37.500
16.68
0.28
45.94
4.40
81
82
5.851047
GCTGATTAAAAAGCTTGTTGCAT
57.149
34.783
12.37
4.00
45.94
3.96
91
92
6.474751
GCTGCCTATTTGAGCTGATTAAAAAG
59.525
38.462
0.00
0.00
0.00
2.27
92
93
6.071447
TGCTGCCTATTTGAGCTGATTAAAAA
60.071
34.615
0.00
0.00
33.66
1.94
93
94
5.418524
TGCTGCCTATTTGAGCTGATTAAAA
59.581
36.000
0.00
0.00
33.66
1.52
99
100
2.723322
ATGCTGCCTATTTGAGCTGA
57.277
45.000
0.00
0.00
33.66
4.26
151
189
0.179062
GTCGCCCATCATTGAGCTCT
60.179
55.000
16.19
0.00
0.00
4.09
156
194
0.829990
TGCTAGTCGCCCATCATTGA
59.170
50.000
0.00
0.00
38.05
2.57
174
212
1.474330
GGTTCCTATGCCCAAACCTG
58.526
55.000
0.00
0.00
38.48
4.00
186
224
3.510360
CCAAGAGAACTCGAAGGTTCCTA
59.490
47.826
12.48
0.00
44.56
2.94
190
228
4.040461
TCATTCCAAGAGAACTCGAAGGTT
59.960
41.667
0.00
0.00
37.29
3.50
195
233
3.133003
GGGATCATTCCAAGAGAACTCGA
59.867
47.826
0.00
0.00
44.60
4.04
200
238
4.868172
ACATGGGATCATTCCAAGAGAA
57.132
40.909
0.00
0.00
44.60
2.87
210
248
9.288576
CAAATTACATACTGTACATGGGATCAT
57.711
33.333
0.00
0.00
31.69
2.45
214
252
8.735315
CAAACAAATTACATACTGTACATGGGA
58.265
33.333
0.00
0.00
31.69
4.37
246
284
4.082463
TGAACATCTGCGTATGTACTGTGA
60.082
41.667
4.35
0.00
39.16
3.58
251
289
7.593644
TGTATGTATGAACATCTGCGTATGTAC
59.406
37.037
4.35
0.87
42.92
2.90
252
290
7.653647
TGTATGTATGAACATCTGCGTATGTA
58.346
34.615
4.35
0.00
42.92
2.29
253
291
6.512297
TGTATGTATGAACATCTGCGTATGT
58.488
36.000
0.00
0.00
42.92
2.29
254
292
7.406799
TTGTATGTATGAACATCTGCGTATG
57.593
36.000
0.00
0.00
42.92
2.39
255
293
8.607441
ATTTGTATGTATGAACATCTGCGTAT
57.393
30.769
0.00
0.00
42.92
3.06
256
294
9.705290
ATATTTGTATGTATGAACATCTGCGTA
57.295
29.630
0.00
0.00
42.92
4.42
257
295
6.925610
ATTTGTATGTATGAACATCTGCGT
57.074
33.333
0.00
0.00
42.92
5.24
258
296
9.958285
GTATATTTGTATGTATGAACATCTGCG
57.042
33.333
0.00
0.00
42.92
5.18
278
316
9.767228
TGTGCGTTTATATGGTTAGTGTATATT
57.233
29.630
0.00
0.00
0.00
1.28
279
317
9.199982
GTGTGCGTTTATATGGTTAGTGTATAT
57.800
33.333
0.00
0.00
0.00
0.86
280
318
7.379262
CGTGTGCGTTTATATGGTTAGTGTATA
59.621
37.037
0.00
0.00
0.00
1.47
283
321
4.327898
CGTGTGCGTTTATATGGTTAGTGT
59.672
41.667
0.00
0.00
0.00
3.55
284
322
4.780946
GCGTGTGCGTTTATATGGTTAGTG
60.781
45.833
0.00
0.00
40.81
2.74
287
325
3.929417
GCGTGTGCGTTTATATGGTTA
57.071
42.857
0.00
0.00
40.81
2.85
288
326
2.817538
GCGTGTGCGTTTATATGGTT
57.182
45.000
0.00
0.00
40.81
3.67
300
338
2.277247
GTGTGTGTGTGCGTGTGC
60.277
61.111
0.00
0.00
43.20
4.57
301
339
1.225991
GTGTGTGTGTGTGCGTGTG
60.226
57.895
0.00
0.00
0.00
3.82
302
340
1.669437
TGTGTGTGTGTGTGCGTGT
60.669
52.632
0.00
0.00
0.00
4.49
303
341
1.225991
GTGTGTGTGTGTGTGCGTG
60.226
57.895
0.00
0.00
0.00
5.34
304
342
1.669437
TGTGTGTGTGTGTGTGCGT
60.669
52.632
0.00
0.00
0.00
5.24
305
343
1.225991
GTGTGTGTGTGTGTGTGCG
60.226
57.895
0.00
0.00
0.00
5.34
306
344
0.454285
GTGTGTGTGTGTGTGTGTGC
60.454
55.000
0.00
0.00
0.00
4.57
307
345
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
308
346
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
309
347
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
310
348
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
311
349
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
312
350
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
313
351
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
314
352
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
315
353
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
316
354
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
317
355
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
318
356
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
319
357
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
320
358
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
321
359
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
322
360
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
323
361
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
324
362
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
325
363
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
326
364
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
327
365
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
328
366
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
329
367
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
330
368
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
331
369
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
332
370
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
333
371
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
334
372
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
335
373
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
336
374
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
337
375
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
338
376
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
339
377
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
340
378
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
341
379
1.155889
AGTGTGTGTGTGTGTGTGTG
58.844
50.000
0.00
0.00
0.00
3.82
342
380
2.739913
GTTAGTGTGTGTGTGTGTGTGT
59.260
45.455
0.00
0.00
0.00
3.72
343
381
2.095213
GGTTAGTGTGTGTGTGTGTGTG
59.905
50.000
0.00
0.00
0.00
3.82
344
382
2.352388
GGTTAGTGTGTGTGTGTGTGT
58.648
47.619
0.00
0.00
0.00
3.72
345
383
1.668751
GGGTTAGTGTGTGTGTGTGTG
59.331
52.381
0.00
0.00
0.00
3.82
346
384
1.407712
GGGGTTAGTGTGTGTGTGTGT
60.408
52.381
0.00
0.00
0.00
3.72
347
385
1.305201
GGGGTTAGTGTGTGTGTGTG
58.695
55.000
0.00
0.00
0.00
3.82
348
386
0.913205
TGGGGTTAGTGTGTGTGTGT
59.087
50.000
0.00
0.00
0.00
3.72
349
387
1.879380
CATGGGGTTAGTGTGTGTGTG
59.121
52.381
0.00
0.00
0.00
3.82
350
388
1.771854
TCATGGGGTTAGTGTGTGTGT
59.228
47.619
0.00
0.00
0.00
3.72
358
396
0.620556
CAGGTGCTCATGGGGTTAGT
59.379
55.000
0.00
0.00
0.00
2.24
362
400
4.415150
CGCAGGTGCTCATGGGGT
62.415
66.667
9.32
0.00
39.32
4.95
366
404
0.104487
ATCTCTCGCAGGTGCTCATG
59.896
55.000
0.00
0.00
39.32
3.07
377
415
1.201343
GTGACGGCTTTATCTCTCGC
58.799
55.000
0.00
0.00
0.00
5.03
385
423
4.081697
TCTCAAGATGATGTGACGGCTTTA
60.082
41.667
0.00
0.00
0.00
1.85
386
424
3.005554
CTCAAGATGATGTGACGGCTTT
58.994
45.455
0.00
0.00
0.00
3.51
393
431
9.322773
GACTTCATTAATCTCAAGATGATGTGA
57.677
33.333
8.00
5.59
37.16
3.58
411
449
1.668419
GCGCCTATGGTGACTTCATT
58.332
50.000
0.00
0.00
34.74
2.57
413
451
1.220749
GGCGCCTATGGTGACTTCA
59.779
57.895
22.15
0.00
38.38
3.02
437
475
2.808321
GAGACGTTTCGGTCGGCC
60.808
66.667
0.00
0.00
41.81
6.13
482
520
6.813152
CGCATTTTTCTGGATTTAATTCAGGT
59.187
34.615
12.80
0.00
0.00
4.00
489
527
6.744112
ACTGTTCGCATTTTTCTGGATTTAA
58.256
32.000
0.00
0.00
0.00
1.52
509
547
4.042934
AGGTCCTTGGCTTAACATTACTGT
59.957
41.667
0.00
0.00
37.12
3.55
513
551
5.947566
GGTTTAGGTCCTTGGCTTAACATTA
59.052
40.000
0.00
0.00
0.00
1.90
519
557
4.403734
CAAAGGTTTAGGTCCTTGGCTTA
58.596
43.478
0.00
0.00
43.50
3.09
525
563
2.516702
ACCACCAAAGGTTTAGGTCCTT
59.483
45.455
0.00
0.00
45.84
3.36
531
569
2.306847
AGCACACCACCAAAGGTTTAG
58.693
47.619
0.00
0.00
40.77
1.85
540
578
0.466543
ACGAAACTAGCACACCACCA
59.533
50.000
0.00
0.00
0.00
4.17
543
581
2.831685
ATGACGAAACTAGCACACCA
57.168
45.000
0.00
0.00
0.00
4.17
615
654
7.724305
AAAGAACTAGCTCATGTTCGTTTAA
57.276
32.000
16.32
0.00
44.95
1.52
621
660
9.170584
GTTTTGTTAAAGAACTAGCTCATGTTC
57.829
33.333
15.19
15.19
41.84
3.18
715
2347
1.925972
GGGCCTCCCTTGAAGGTCT
60.926
63.158
10.82
0.00
41.34
3.85
717
2349
2.121506
TGGGCCTCCCTTGAAGGT
60.122
61.111
10.82
0.00
45.70
3.50
720
2352
3.264845
GGGTGGGCCTCCCTTGAA
61.265
66.667
31.99
0.00
45.70
2.69
731
2363
4.232061
TTGCAAGGTGGGGGTGGG
62.232
66.667
0.00
0.00
0.00
4.61
732
2364
2.917227
GTTGCAAGGTGGGGGTGG
60.917
66.667
0.00
0.00
0.00
4.61
733
2365
2.198426
AGTTGCAAGGTGGGGGTG
59.802
61.111
0.00
0.00
0.00
4.61
734
2366
2.198426
CAGTTGCAAGGTGGGGGT
59.802
61.111
0.00
0.00
0.00
4.95
938
2573
4.660771
CAGAGGGAGGTATTTAATGGAGGT
59.339
45.833
0.00
0.00
0.00
3.85
941
2576
4.307259
AGCAGAGGGAGGTATTTAATGGA
58.693
43.478
0.00
0.00
0.00
3.41
990
2625
2.444895
GTCTGGGGGAGGAGCGAT
60.445
66.667
0.00
0.00
0.00
4.58
1012
2658
0.319040
TCACTTCGTGTCAGCTCTGC
60.319
55.000
0.00
0.00
34.79
4.26
1019
2665
0.033504
GGCTTCCTCACTTCGTGTCA
59.966
55.000
0.00
0.00
34.79
3.58
1021
2667
0.468226
TTGGCTTCCTCACTTCGTGT
59.532
50.000
0.00
0.00
34.79
4.49
1032
2678
2.561373
CGGCGTTTCTTGGCTTCC
59.439
61.111
0.00
0.00
0.00
3.46
1058
2704
1.487976
GCTCCAGGATGTCCATCTTGA
59.512
52.381
17.92
7.16
44.69
3.02
1059
2705
1.211212
TGCTCCAGGATGTCCATCTTG
59.789
52.381
11.31
11.31
42.47
3.02
1234
2903
1.592939
GCTTCGAGGATCCTTCGGC
60.593
63.158
24.19
19.00
0.00
5.54
1245
2914
1.023513
CCAGCTCCAAAGGCTTCGAG
61.024
60.000
16.19
16.19
38.03
4.04
1284
2959
2.559922
ATCTCTCCGTCTCCGCTGGT
62.560
60.000
0.00
0.00
0.00
4.00
1308
2983
1.456705
AGACGATCTCCAGCTCCCC
60.457
63.158
0.00
0.00
0.00
4.81
1365
3040
2.893398
GCCGTGTACCTCTCCCTG
59.107
66.667
0.00
0.00
0.00
4.45
1455
3136
0.179171
ACACGCCGTAGTCATCTTCG
60.179
55.000
0.00
0.00
34.95
3.79
1499
3183
1.221840
CTCACCACCTCCCATTCGG
59.778
63.158
0.00
0.00
0.00
4.30
1526
3210
3.175240
CAGTTGTCGCCGCGAGAG
61.175
66.667
17.42
0.00
36.23
3.20
1529
3213
4.045771
TAGCAGTTGTCGCCGCGA
62.046
61.111
12.39
12.39
0.00
5.87
1530
3214
3.838795
GTAGCAGTTGTCGCCGCG
61.839
66.667
6.39
6.39
0.00
6.46
1531
3215
3.838795
CGTAGCAGTTGTCGCCGC
61.839
66.667
0.00
0.00
0.00
6.53
1547
3237
3.862394
TTGTACCGCCACGTTCCCG
62.862
63.158
0.00
0.00
40.83
5.14
1549
3239
1.005867
TCTTGTACCGCCACGTTCC
60.006
57.895
0.00
0.00
0.00
3.62
1550
3240
1.623973
GCTCTTGTACCGCCACGTTC
61.624
60.000
0.00
0.00
0.00
3.95
1551
3241
1.666872
GCTCTTGTACCGCCACGTT
60.667
57.895
0.00
0.00
0.00
3.99
1552
3242
2.048503
GCTCTTGTACCGCCACGT
60.049
61.111
0.00
0.00
0.00
4.49
1553
3243
2.813908
GGCTCTTGTACCGCCACG
60.814
66.667
7.46
0.00
43.25
4.94
1554
3244
2.436115
GGGCTCTTGTACCGCCAC
60.436
66.667
12.62
1.99
45.53
5.01
1555
3245
4.077184
CGGGCTCTTGTACCGCCA
62.077
66.667
12.62
0.00
45.53
5.69
1556
3246
3.718210
CTCGGGCTCTTGTACCGCC
62.718
68.421
0.00
4.54
46.78
6.13
1557
3247
2.202756
CTCGGGCTCTTGTACCGC
60.203
66.667
0.00
0.00
46.78
5.68
1672
3365
1.142778
GATCAGAAGCTCGACACGGC
61.143
60.000
0.00
0.00
0.00
5.68
1677
3370
2.929531
TGAGTGATCAGAAGCTCGAC
57.070
50.000
0.00
0.00
0.00
4.20
1695
3388
3.648339
AACAATGCTACAGTGGCTTTG
57.352
42.857
26.46
26.46
44.70
2.77
1696
3389
3.891366
AGAAACAATGCTACAGTGGCTTT
59.109
39.130
10.64
7.32
33.50
3.51
1698
3391
3.146104
AGAAACAATGCTACAGTGGCT
57.854
42.857
10.64
0.00
33.50
4.75
1699
3392
3.923017
AAGAAACAATGCTACAGTGGC
57.077
42.857
0.99
0.99
33.50
5.01
1701
3394
7.992180
AAAAGAAAGAAACAATGCTACAGTG
57.008
32.000
0.00
0.00
35.46
3.66
1722
3415
8.373981
TGCCAATTTCATTCTTCCAGAATAAAA
58.626
29.630
0.00
0.00
42.67
1.52
1726
3419
6.363167
TTGCCAATTTCATTCTTCCAGAAT
57.637
33.333
0.00
0.00
45.23
2.40
1728
3421
7.479352
TTATTGCCAATTTCATTCTTCCAGA
57.521
32.000
0.00
0.00
0.00
3.86
1729
3422
7.820872
AGTTTATTGCCAATTTCATTCTTCCAG
59.179
33.333
0.00
0.00
0.00
3.86
1730
3423
7.603404
CAGTTTATTGCCAATTTCATTCTTCCA
59.397
33.333
0.00
0.00
0.00
3.53
1731
3424
7.603784
ACAGTTTATTGCCAATTTCATTCTTCC
59.396
33.333
0.00
0.00
0.00
3.46
1754
3447
6.817765
TTTTGCTTCCACCTAAGATTACAG
57.182
37.500
0.00
0.00
0.00
2.74
1789
3485
5.047235
AGGGTACATCGGCTATCTAATTCAC
60.047
44.000
0.00
0.00
0.00
3.18
1791
3487
5.411781
CAGGGTACATCGGCTATCTAATTC
58.588
45.833
0.00
0.00
0.00
2.17
1821
3524
7.397221
ACTGATCTGACTGGATGAAAACATTA
58.603
34.615
6.60
0.00
0.00
1.90
1836
3539
4.952262
TGCAAGCAATAACTGATCTGAC
57.048
40.909
6.60
0.00
0.00
3.51
1837
3540
5.005740
AGTTGCAAGCAATAACTGATCTGA
58.994
37.500
11.00
0.00
38.28
3.27
1840
3543
4.156556
TGGAGTTGCAAGCAATAACTGATC
59.843
41.667
11.00
0.00
38.28
2.92
1865
3573
1.203441
ATCCAGCACCAGCAGAGGAA
61.203
55.000
0.00
0.00
45.49
3.36
1878
3586
2.359850
TGTCGTTGGGCATCCAGC
60.360
61.111
0.00
0.00
45.04
4.85
1879
3587
2.390599
CGTGTCGTTGGGCATCCAG
61.391
63.158
0.00
0.00
45.04
3.86
1881
3589
3.799755
GCGTGTCGTTGGGCATCC
61.800
66.667
0.00
0.00
0.00
3.51
1884
3592
4.555709
AAGGCGTGTCGTTGGGCA
62.556
61.111
0.00
0.00
0.00
5.36
1886
3594
4.025401
GCAAGGCGTGTCGTTGGG
62.025
66.667
1.69
0.00
40.04
4.12
1887
3595
1.019278
ATAGCAAGGCGTGTCGTTGG
61.019
55.000
1.69
0.00
40.04
3.77
1888
3596
0.370273
GATAGCAAGGCGTGTCGTTG
59.630
55.000
1.69
0.00
41.95
4.10
1889
3597
0.246635
AGATAGCAAGGCGTGTCGTT
59.753
50.000
1.69
0.00
0.00
3.85
1890
3598
0.458543
CAGATAGCAAGGCGTGTCGT
60.459
55.000
1.69
0.00
0.00
4.34
1891
3599
0.458543
ACAGATAGCAAGGCGTGTCG
60.459
55.000
1.69
0.00
0.00
4.35
1892
3600
1.002366
CACAGATAGCAAGGCGTGTC
58.998
55.000
1.69
0.00
0.00
3.67
1893
3601
0.608130
TCACAGATAGCAAGGCGTGT
59.392
50.000
1.69
0.00
0.00
4.49
1894
3602
1.002366
GTCACAGATAGCAAGGCGTG
58.998
55.000
0.00
0.00
0.00
5.34
1904
3617
4.455533
GCAAATCAACAGGTGTCACAGATA
59.544
41.667
5.12
0.00
0.00
1.98
1907
3620
2.358582
TGCAAATCAACAGGTGTCACAG
59.641
45.455
5.12
0.00
0.00
3.66
1909
3622
3.435105
TTGCAAATCAACAGGTGTCAC
57.565
42.857
0.00
0.00
0.00
3.67
1910
3623
4.370049
CATTTGCAAATCAACAGGTGTCA
58.630
39.130
21.70
0.00
33.73
3.58
1911
3624
3.184986
GCATTTGCAAATCAACAGGTGTC
59.815
43.478
21.70
3.38
41.59
3.67
1922
3635
3.768757
TGGCCTAACTAGCATTTGCAAAT
59.231
39.130
18.99
18.99
45.16
2.32
1923
3636
3.161067
TGGCCTAACTAGCATTTGCAAA
58.839
40.909
15.44
15.44
45.16
3.68
1963
3679
1.068264
GCTTTTGGCTTCACTGGTAGC
60.068
52.381
0.00
0.00
36.77
3.58
1991
3745
3.813443
AGTAATAAGCTGCAGTGATGGG
58.187
45.455
16.64
0.00
0.00
4.00
1996
3750
5.049474
TGTCAACAAGTAATAAGCTGCAGTG
60.049
40.000
16.64
4.57
0.00
3.66
1997
3751
5.063204
TGTCAACAAGTAATAAGCTGCAGT
58.937
37.500
16.64
0.00
0.00
4.40
2006
3760
6.092670
GCTGAGCATTCTGTCAACAAGTAATA
59.907
38.462
0.00
0.00
0.00
0.98
2010
3764
2.551459
GCTGAGCATTCTGTCAACAAGT
59.449
45.455
0.00
0.00
0.00
3.16
2012
3766
2.854963
AGCTGAGCATTCTGTCAACAA
58.145
42.857
7.39
0.00
0.00
2.83
2029
3783
4.504858
CAGGAAACGTCAGGTAATAAGCT
58.495
43.478
0.00
0.00
0.00
3.74
2031
3785
4.504858
AGCAGGAAACGTCAGGTAATAAG
58.495
43.478
0.00
0.00
0.00
1.73
2032
3786
4.546829
AGCAGGAAACGTCAGGTAATAA
57.453
40.909
0.00
0.00
0.00
1.40
2033
3787
4.441079
GCTAGCAGGAAACGTCAGGTAATA
60.441
45.833
10.63
0.00
0.00
0.98
2034
3788
3.679083
GCTAGCAGGAAACGTCAGGTAAT
60.679
47.826
10.63
0.00
0.00
1.89
2035
3789
2.353406
GCTAGCAGGAAACGTCAGGTAA
60.353
50.000
10.63
0.00
0.00
2.85
2036
3790
1.203994
GCTAGCAGGAAACGTCAGGTA
59.796
52.381
10.63
0.00
0.00
3.08
2039
3793
2.941453
TAGCTAGCAGGAAACGTCAG
57.059
50.000
18.83
0.00
0.00
3.51
2049
3803
4.872124
TGTGAATGTGTGATTAGCTAGCAG
59.128
41.667
18.83
0.00
0.00
4.24
2053
3807
5.046663
TCCAGTGTGAATGTGTGATTAGCTA
60.047
40.000
0.00
0.00
0.00
3.32
2055
3809
4.002982
TCCAGTGTGAATGTGTGATTAGC
58.997
43.478
0.00
0.00
0.00
3.09
2056
3810
5.469760
TGTTCCAGTGTGAATGTGTGATTAG
59.530
40.000
0.00
0.00
0.00
1.73
2057
3811
5.238432
GTGTTCCAGTGTGAATGTGTGATTA
59.762
40.000
0.00
0.00
0.00
1.75
2059
3813
3.565482
GTGTTCCAGTGTGAATGTGTGAT
59.435
43.478
0.00
0.00
0.00
3.06
2062
3816
2.945008
CTGTGTTCCAGTGTGAATGTGT
59.055
45.455
0.00
0.00
36.37
3.72
2063
3817
2.291465
CCTGTGTTCCAGTGTGAATGTG
59.709
50.000
0.00
0.00
39.74
3.21
2064
3818
2.172505
TCCTGTGTTCCAGTGTGAATGT
59.827
45.455
0.00
0.00
39.74
2.71
2065
3819
2.849942
TCCTGTGTTCCAGTGTGAATG
58.150
47.619
0.00
0.00
39.74
2.67
2066
3820
3.328931
AGATCCTGTGTTCCAGTGTGAAT
59.671
43.478
0.00
0.00
39.74
2.57
2067
3821
2.705658
AGATCCTGTGTTCCAGTGTGAA
59.294
45.455
0.00
0.00
39.74
3.18
2068
3822
2.300152
GAGATCCTGTGTTCCAGTGTGA
59.700
50.000
0.00
0.00
39.74
3.58
2069
3823
2.301296
AGAGATCCTGTGTTCCAGTGTG
59.699
50.000
0.00
0.00
39.74
3.82
2070
3824
2.301296
CAGAGATCCTGTGTTCCAGTGT
59.699
50.000
3.72
0.00
39.74
3.55
2071
3825
2.354503
CCAGAGATCCTGTGTTCCAGTG
60.355
54.545
9.47
0.00
41.33
3.66
2072
3826
1.905215
CCAGAGATCCTGTGTTCCAGT
59.095
52.381
9.47
0.00
41.33
4.00
2073
3827
1.406614
GCCAGAGATCCTGTGTTCCAG
60.407
57.143
9.47
0.00
41.33
3.86
2074
3828
0.615331
GCCAGAGATCCTGTGTTCCA
59.385
55.000
9.47
0.00
41.33
3.53
2075
3829
0.908198
AGCCAGAGATCCTGTGTTCC
59.092
55.000
9.47
0.00
41.33
3.62
2076
3830
1.552337
TGAGCCAGAGATCCTGTGTTC
59.448
52.381
9.47
8.76
41.33
3.18
2077
3831
1.554160
CTGAGCCAGAGATCCTGTGTT
59.446
52.381
9.47
1.62
41.33
3.32
2078
3832
1.193323
CTGAGCCAGAGATCCTGTGT
58.807
55.000
9.47
0.00
41.33
3.72
2079
3833
0.179078
GCTGAGCCAGAGATCCTGTG
60.179
60.000
6.40
0.00
41.33
3.66
2126
3880
0.178533
TGAGGCACATCATCGCATGA
59.821
50.000
0.00
2.05
44.55
3.07
2127
3881
0.306840
GTGAGGCACATCATCGCATG
59.693
55.000
0.00
0.00
36.15
4.06
2128
3882
0.816825
GGTGAGGCACATCATCGCAT
60.817
55.000
0.00
0.00
37.70
4.73
2129
3883
1.450134
GGTGAGGCACATCATCGCA
60.450
57.895
0.00
0.00
37.70
5.10
2130
3884
0.104855
TAGGTGAGGCACATCATCGC
59.895
55.000
0.00
0.00
35.37
4.58
2131
3885
1.539065
GGTAGGTGAGGCACATCATCG
60.539
57.143
0.00
0.00
35.37
3.84
2173
3928
1.606601
AAGAAAGAAAGGGCCGGCC
60.607
57.895
38.57
38.57
0.00
6.13
2174
3929
1.586541
CAAGAAAGAAAGGGCCGGC
59.413
57.895
21.18
21.18
0.00
6.13
2175
3930
1.877576
GCCAAGAAAGAAAGGGCCGG
61.878
60.000
0.00
0.00
38.70
6.13
2176
3931
1.178534
TGCCAAGAAAGAAAGGGCCG
61.179
55.000
0.00
0.00
43.96
6.13
2284
4058
2.523168
TGTCCTGTCCTGGCACGA
60.523
61.111
0.00
0.00
0.00
4.35
2302
4076
2.704193
GCGTTCGTTCACGGAGTCG
61.704
63.158
0.00
0.00
41.61
4.18
2319
4093
2.755929
GGAGAACGAGACATGTGGC
58.244
57.895
1.15
0.00
0.00
5.01
2385
4196
4.885907
CCATTACCATCATCAGCTTCAACT
59.114
41.667
0.00
0.00
0.00
3.16
2387
4198
3.633525
GCCATTACCATCATCAGCTTCAA
59.366
43.478
0.00
0.00
0.00
2.69
2399
4210
1.972872
GCTACTGCTGCCATTACCAT
58.027
50.000
0.00
0.00
36.03
3.55
2443
4254
2.415843
CGGACATACGGACCGCAT
59.584
61.111
15.39
3.05
40.19
4.73
2457
4268
4.728102
CGCGGTAGGTGCAACGGA
62.728
66.667
0.00
0.00
38.12
4.69
2516
4327
1.828461
TAATGTCGCACCCAACCGGA
61.828
55.000
9.46
0.00
34.64
5.14
2541
4352
2.921912
GCAAAGGCACACGTACGTAGTA
60.922
50.000
22.34
0.00
40.72
1.82
2544
4355
1.276820
CGCAAAGGCACACGTACGTA
61.277
55.000
22.34
0.00
41.24
3.57
2545
4356
2.591311
CGCAAAGGCACACGTACGT
61.591
57.895
16.72
16.72
41.24
3.57
2546
4357
2.170036
CGCAAAGGCACACGTACG
59.830
61.111
15.01
15.01
41.24
3.67
2547
4358
2.554272
CCGCAAAGGCACACGTAC
59.446
61.111
0.00
0.00
41.24
3.67
2548
4359
2.666862
CCCGCAAAGGCACACGTA
60.667
61.111
0.00
0.00
41.24
3.57
2570
4381
3.549150
CTTCAAGCTCGAGCCGCG
61.549
66.667
32.94
21.19
43.38
6.46
2571
4382
2.433318
ACTTCAAGCTCGAGCCGC
60.433
61.111
32.94
10.72
43.38
6.53
2572
4383
1.075425
CTCACTTCAAGCTCGAGCCG
61.075
60.000
32.94
24.09
43.38
5.52
2573
4384
0.739112
CCTCACTTCAAGCTCGAGCC
60.739
60.000
32.94
15.76
43.38
4.70
2574
4385
0.739112
CCCTCACTTCAAGCTCGAGC
60.739
60.000
30.01
30.01
42.49
5.03
2578
4697
1.433534
CGAACCCTCACTTCAAGCTC
58.566
55.000
0.00
0.00
0.00
4.09
2588
4707
3.307906
CCCGTGACCGAACCCTCA
61.308
66.667
0.00
0.00
35.63
3.86
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.