Multiple sequence alignment - TraesCS7B01G064200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G064200 chr7B 100.000 3792 0 0 564 4355 69818676 69822467 0.000000e+00 7003
1 TraesCS7B01G064200 chr7B 100.000 244 0 0 1 244 69818113 69818356 6.640000e-123 451
2 TraesCS7B01G064200 chr7B 95.475 221 6 2 4004 4220 70243194 70243414 2.490000e-92 350
3 TraesCS7B01G064200 chr7B 95.023 221 7 2 4004 4220 69912531 69912751 1.160000e-90 344
4 TraesCS7B01G064200 chr7B 95.023 221 7 2 4004 4220 70068914 70069134 1.160000e-90 344
5 TraesCS7B01G064200 chr7B 94.180 189 10 1 642 830 117500674 117500861 1.980000e-73 287
6 TraesCS7B01G064200 chr7B 91.156 147 12 1 830 975 25657004 25656858 9.550000e-47 198
7 TraesCS7B01G064200 chr7D 94.997 2998 103 23 982 3946 110881577 110884560 0.000000e+00 4662
8 TraesCS7B01G064200 chr7D 89.855 414 19 8 3965 4355 110884544 110884957 1.080000e-140 510
9 TraesCS7B01G064200 chr7D 95.928 221 5 2 4004 4220 110890316 110890536 5.360000e-94 355
10 TraesCS7B01G064200 chr7D 93.197 147 9 1 830 975 78304075 78303929 9.490000e-52 215
11 TraesCS7B01G064200 chr7D 88.889 144 14 2 4213 4355 37424315 37424173 4.480000e-40 176
12 TraesCS7B01G064200 chr7A 94.048 3108 122 23 1035 4120 116005197 116008263 0.000000e+00 4656
13 TraesCS7B01G064200 chr7A 91.096 146 13 0 830 975 116004846 116004991 9.550000e-47 198
14 TraesCS7B01G064200 chrUn 83.860 601 67 16 1291 1886 109548373 109548948 2.960000e-151 545
15 TraesCS7B01G064200 chrUn 95.023 221 7 2 4004 4220 426294616 426294836 1.160000e-90 344
16 TraesCS7B01G064200 chrUn 94.595 185 9 1 642 826 322260012 322259829 7.130000e-73 285
17 TraesCS7B01G064200 chr3A 83.306 605 67 14 1291 1886 326495006 326495585 1.070000e-145 527
18 TraesCS7B01G064200 chr3A 82.951 610 67 20 1288 1886 137587790 137588373 2.320000e-142 516
19 TraesCS7B01G064200 chr3A 93.333 135 9 0 830 964 681458214 681458348 2.660000e-47 200
20 TraesCS7B01G064200 chr6B 95.023 221 7 2 4004 4220 548948317 548948537 1.160000e-90 344
21 TraesCS7B01G064200 chr6B 95.023 221 7 2 4004 4220 549028829 549029049 1.160000e-90 344
22 TraesCS7B01G064200 chr3B 95.135 185 9 0 642 826 240278731 240278915 4.260000e-75 292
23 TraesCS7B01G064200 chr3B 94.595 185 10 0 642 826 41560992 41560808 1.980000e-73 287
24 TraesCS7B01G064200 chr3B 94.180 189 10 1 642 830 719314762 719314575 1.980000e-73 287
25 TraesCS7B01G064200 chr3B 93.750 192 11 1 642 833 813188332 813188522 1.980000e-73 287
26 TraesCS7B01G064200 chr3B 92.053 151 12 0 825 975 720955654 720955804 3.410000e-51 213
27 TraesCS7B01G064200 chr2B 95.135 185 9 0 642 826 681818352 681818168 4.260000e-75 292
28 TraesCS7B01G064200 chr2B 91.503 153 12 1 824 976 253278426 253278275 4.410000e-50 209
29 TraesCS7B01G064200 chr4B 93.401 197 10 2 642 835 106082603 106082799 5.510000e-74 289
30 TraesCS7B01G064200 chr2D 94.624 186 10 0 642 827 452401861 452402046 5.510000e-74 289
31 TraesCS7B01G064200 chr3D 94.079 152 9 0 824 975 544780692 544780843 9.420000e-57 231
32 TraesCS7B01G064200 chr3D 90.909 143 9 4 4212 4350 613433231 613433089 5.750000e-44 189
33 TraesCS7B01G064200 chr1D 94.964 139 6 1 4218 4355 493735540 493735402 2.640000e-52 217
34 TraesCS7B01G064200 chr1D 90.132 152 11 3 3748 3895 382909148 382909299 1.240000e-45 195
35 TraesCS7B01G064200 chr6A 91.667 144 12 0 832 975 1029552 1029695 2.660000e-47 200
36 TraesCS7B01G064200 chr6A 79.487 195 32 3 1 188 481079571 481079378 9.830000e-27 132
37 TraesCS7B01G064200 chr6D 91.096 146 12 1 830 975 1589323 1589179 3.440000e-46 196
38 TraesCS7B01G064200 chr6D 91.549 142 7 2 4213 4350 324558180 324558320 1.600000e-44 191
39 TraesCS7B01G064200 chr6D 91.971 137 9 1 4216 4350 460390101 460389965 1.600000e-44 191
40 TraesCS7B01G064200 chr5A 90.210 143 8 5 4213 4350 381308485 381308626 9.620000e-42 182
41 TraesCS7B01G064200 chr5A 91.176 136 8 3 4218 4350 450217917 450217783 9.620000e-42 182
42 TraesCS7B01G064200 chr4D 91.176 136 9 3 4218 4350 393629888 393630023 9.620000e-42 182
43 TraesCS7B01G064200 chr1A 88.966 145 13 3 4213 4355 353664714 353664571 4.480000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G064200 chr7B 69818113 69822467 4354 False 3727 7003 100.000 1 4355 2 chr7B.!!$F5 4354
1 TraesCS7B01G064200 chr7D 110881577 110884957 3380 False 2586 4662 92.426 982 4355 2 chr7D.!!$F2 3373
2 TraesCS7B01G064200 chr7A 116004846 116008263 3417 False 2427 4656 92.572 830 4120 2 chr7A.!!$F1 3290
3 TraesCS7B01G064200 chrUn 109548373 109548948 575 False 545 545 83.860 1291 1886 1 chrUn.!!$F1 595
4 TraesCS7B01G064200 chr3A 326495006 326495585 579 False 527 527 83.306 1291 1886 1 chr3A.!!$F2 595
5 TraesCS7B01G064200 chr3A 137587790 137588373 583 False 516 516 82.951 1288 1886 1 chr3A.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.035056 CAACACCACTCCTCCCATCC 60.035 60.000 0.00 0.00 0.00 3.51 F
584 585 0.175531 GCTTTGCCCAACAACACACT 59.824 50.000 0.00 0.00 38.23 3.55 F
795 796 0.241749 TGACAACCTAGGTGTACGCG 59.758 55.000 17.14 3.53 0.00 6.01 F
953 954 0.247695 GAGTTAAATGCGCTGCGTCC 60.248 55.000 24.04 8.35 0.00 4.79 F
1149 1296 1.227089 CGCCGTCTTCATCCTCCTG 60.227 63.158 0.00 0.00 0.00 3.86 F
1527 1679 1.278238 CGTAAGTGGTGAGATTCGGC 58.722 55.000 0.00 0.00 0.00 5.54 F
2896 3088 1.106285 GAGCCTGCTAATTTGGGTGG 58.894 55.000 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1822 0.326264 AGCCTTCCTGCAGGTACAAG 59.674 55.000 31.58 25.43 36.15 3.16 R
2034 2222 1.561076 AGCTGTAATCCCATGCTCACA 59.439 47.619 0.00 0.00 0.00 3.58 R
2173 2363 2.550180 GCCAAGAAGAACTCCAGTTGAC 59.450 50.000 0.00 0.00 38.56 3.18 R
2894 3086 0.249238 GCCAAATGCACGAACAACCA 60.249 50.000 0.00 0.00 40.77 3.67 R
2895 3087 2.516486 GCCAAATGCACGAACAACC 58.484 52.632 0.00 0.00 40.77 3.77 R
3267 3462 0.032267 GGGCTAGCACATCGTACTCC 59.968 60.000 18.24 0.00 0.00 3.85 R
3828 4038 0.806868 AATGACATGGCAGCTGTTCG 59.193 50.000 16.64 4.33 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.649096 CGTGAATCGCCACCAACA 58.351 55.556 0.00 0.00 33.67 3.33
19 20 1.206578 CGTGAATCGCCACCAACAC 59.793 57.895 0.00 0.00 33.67 3.32
20 21 1.227999 CGTGAATCGCCACCAACACT 61.228 55.000 0.00 0.00 33.67 3.55
21 22 0.951558 GTGAATCGCCACCAACACTT 59.048 50.000 0.00 0.00 0.00 3.16
22 23 0.950836 TGAATCGCCACCAACACTTG 59.049 50.000 0.00 0.00 0.00 3.16
23 24 0.387239 GAATCGCCACCAACACTTGC 60.387 55.000 0.00 0.00 0.00 4.01
24 25 2.128853 AATCGCCACCAACACTTGCG 62.129 55.000 0.00 0.00 46.09 4.85
25 26 4.326766 CGCCACCAACACTTGCGG 62.327 66.667 0.00 0.00 41.42 5.69
26 27 2.904866 GCCACCAACACTTGCGGA 60.905 61.111 0.00 0.00 0.00 5.54
27 28 3.030652 CCACCAACACTTGCGGAC 58.969 61.111 0.00 0.00 0.00 4.79
28 29 2.631428 CACCAACACTTGCGGACG 59.369 61.111 0.00 0.00 0.00 4.79
29 30 1.885388 CACCAACACTTGCGGACGA 60.885 57.895 0.00 0.00 0.00 4.20
30 31 1.885850 ACCAACACTTGCGGACGAC 60.886 57.895 0.00 0.00 0.00 4.34
31 32 2.604174 CCAACACTTGCGGACGACC 61.604 63.158 0.00 0.00 0.00 4.79
32 33 1.885388 CAACACTTGCGGACGACCA 60.885 57.895 4.48 0.00 35.59 4.02
33 34 1.594293 AACACTTGCGGACGACCAG 60.594 57.895 4.48 0.00 35.59 4.00
34 35 3.414700 CACTTGCGGACGACCAGC 61.415 66.667 4.48 9.03 36.67 4.85
35 36 3.923864 ACTTGCGGACGACCAGCA 61.924 61.111 16.12 16.12 41.21 4.41
36 37 2.664851 CTTGCGGACGACCAGCAA 60.665 61.111 24.51 24.51 45.42 3.91
37 38 2.664851 TTGCGGACGACCAGCAAG 60.665 61.111 23.23 2.53 44.09 4.01
40 41 3.114616 CGGACGACCAGCAAGCAG 61.115 66.667 4.48 0.00 35.59 4.24
41 42 2.343758 GGACGACCAGCAAGCAGA 59.656 61.111 0.00 0.00 35.97 4.26
42 43 2.029844 GGACGACCAGCAAGCAGAC 61.030 63.158 0.00 0.00 35.97 3.51
43 44 1.300931 GACGACCAGCAAGCAGACA 60.301 57.895 0.00 0.00 0.00 3.41
44 45 0.880278 GACGACCAGCAAGCAGACAA 60.880 55.000 0.00 0.00 0.00 3.18
45 46 0.882042 ACGACCAGCAAGCAGACAAG 60.882 55.000 0.00 0.00 0.00 3.16
46 47 1.578423 GACCAGCAAGCAGACAAGC 59.422 57.895 0.00 0.00 0.00 4.01
48 49 0.888285 ACCAGCAAGCAGACAAGCTC 60.888 55.000 0.00 0.00 45.89 4.09
49 50 1.584380 CCAGCAAGCAGACAAGCTCC 61.584 60.000 0.00 0.00 45.89 4.70
50 51 0.605860 CAGCAAGCAGACAAGCTCCT 60.606 55.000 0.00 0.00 45.89 3.69
51 52 0.979665 AGCAAGCAGACAAGCTCCTA 59.020 50.000 0.00 0.00 45.89 2.94
52 53 1.066286 AGCAAGCAGACAAGCTCCTAG 60.066 52.381 0.00 0.00 45.89 3.02
53 54 2.011046 GCAAGCAGACAAGCTCCTAGG 61.011 57.143 0.82 0.82 45.89 3.02
54 55 0.251634 AAGCAGACAAGCTCCTAGGC 59.748 55.000 2.96 0.00 45.89 3.93
55 56 1.153269 GCAGACAAGCTCCTAGGCC 60.153 63.158 2.96 0.00 0.00 5.19
56 57 1.621672 GCAGACAAGCTCCTAGGCCT 61.622 60.000 11.78 11.78 0.00 5.19
57 58 0.908198 CAGACAAGCTCCTAGGCCTT 59.092 55.000 12.58 6.30 0.00 4.35
58 59 1.134551 CAGACAAGCTCCTAGGCCTTC 60.135 57.143 12.58 0.00 0.00 3.46
59 60 0.179234 GACAAGCTCCTAGGCCTTCC 59.821 60.000 12.58 0.00 0.00 3.46
60 61 1.275421 ACAAGCTCCTAGGCCTTCCC 61.275 60.000 12.58 0.00 0.00 3.97
61 62 1.694525 AAGCTCCTAGGCCTTCCCC 60.695 63.158 12.58 0.00 0.00 4.81
62 63 2.366972 GCTCCTAGGCCTTCCCCA 60.367 66.667 12.58 0.00 0.00 4.96
63 64 2.001269 GCTCCTAGGCCTTCCCCAA 61.001 63.158 12.58 0.00 0.00 4.12
64 65 1.988982 GCTCCTAGGCCTTCCCCAAG 61.989 65.000 12.58 0.00 0.00 3.61
65 66 1.988982 CTCCTAGGCCTTCCCCAAGC 61.989 65.000 12.58 0.00 0.00 4.01
66 67 2.190578 CTAGGCCTTCCCCAAGCG 59.809 66.667 12.58 0.00 0.00 4.68
67 68 4.109675 TAGGCCTTCCCCAAGCGC 62.110 66.667 12.58 0.00 0.00 5.92
73 74 4.634703 TTCCCCAAGCGCGCTGAA 62.635 61.111 37.24 28.87 0.00 3.02
76 77 4.093952 CCCAAGCGCGCTGAACAG 62.094 66.667 37.24 20.95 0.00 3.16
77 78 3.349006 CCAAGCGCGCTGAACAGT 61.349 61.111 37.24 15.80 0.00 3.55
78 79 2.127496 CAAGCGCGCTGAACAGTG 60.127 61.111 37.24 24.06 41.63 3.66
84 85 3.248029 CGCTGAACAGTGCCACTC 58.752 61.111 0.00 0.00 31.68 3.51
85 86 1.595109 CGCTGAACAGTGCCACTCA 60.595 57.895 0.00 0.00 31.68 3.41
86 87 1.835483 CGCTGAACAGTGCCACTCAC 61.835 60.000 0.00 0.00 45.98 3.51
93 94 3.044305 GTGCCACTCACGCCAGTC 61.044 66.667 0.00 0.00 35.76 3.51
94 95 4.314440 TGCCACTCACGCCAGTCC 62.314 66.667 0.00 0.00 0.00 3.85
113 114 3.414700 CGCGCAACACCACTCCTC 61.415 66.667 8.75 0.00 0.00 3.71
114 115 3.050275 GCGCAACACCACTCCTCC 61.050 66.667 0.30 0.00 0.00 4.30
115 116 2.358737 CGCAACACCACTCCTCCC 60.359 66.667 0.00 0.00 0.00 4.30
116 117 2.836154 GCAACACCACTCCTCCCA 59.164 61.111 0.00 0.00 0.00 4.37
117 118 1.380302 GCAACACCACTCCTCCCAT 59.620 57.895 0.00 0.00 0.00 4.00
118 119 0.678048 GCAACACCACTCCTCCCATC 60.678 60.000 0.00 0.00 0.00 3.51
119 120 0.035056 CAACACCACTCCTCCCATCC 60.035 60.000 0.00 0.00 0.00 3.51
120 121 0.475632 AACACCACTCCTCCCATCCA 60.476 55.000 0.00 0.00 0.00 3.41
121 122 1.201429 ACACCACTCCTCCCATCCAC 61.201 60.000 0.00 0.00 0.00 4.02
122 123 1.160870 ACCACTCCTCCCATCCACA 59.839 57.895 0.00 0.00 0.00 4.17
123 124 1.201429 ACCACTCCTCCCATCCACAC 61.201 60.000 0.00 0.00 0.00 3.82
124 125 1.219124 CACTCCTCCCATCCACACG 59.781 63.158 0.00 0.00 0.00 4.49
125 126 1.229209 ACTCCTCCCATCCACACGT 60.229 57.895 0.00 0.00 0.00 4.49
126 127 1.219124 CTCCTCCCATCCACACGTG 59.781 63.158 15.48 15.48 0.00 4.49
127 128 1.535444 TCCTCCCATCCACACGTGT 60.535 57.895 17.22 17.22 0.00 4.49
128 129 1.375908 CCTCCCATCCACACGTGTG 60.376 63.158 36.13 36.13 45.23 3.82
129 130 2.031919 TCCCATCCACACGTGTGC 59.968 61.111 37.33 0.00 44.34 4.57
130 131 3.422303 CCCATCCACACGTGTGCG 61.422 66.667 37.33 29.56 44.34 5.34
131 132 2.356913 CCATCCACACGTGTGCGA 60.357 61.111 37.33 32.84 44.34 5.10
132 133 2.382746 CCATCCACACGTGTGCGAG 61.383 63.158 37.33 27.26 44.34 5.03
133 134 2.738521 ATCCACACGTGTGCGAGC 60.739 61.111 37.33 0.00 44.34 5.03
134 135 3.513768 ATCCACACGTGTGCGAGCA 62.514 57.895 37.33 20.37 44.34 4.26
135 136 3.705638 CCACACGTGTGCGAGCAG 61.706 66.667 37.33 21.75 44.34 4.24
158 159 4.864334 CCAGATCTGCGCCACCCC 62.864 72.222 17.76 0.00 0.00 4.95
176 177 4.416738 GCTGCAGTCCCCCTCCAC 62.417 72.222 16.64 0.00 0.00 4.02
177 178 3.721706 CTGCAGTCCCCCTCCACC 61.722 72.222 5.25 0.00 0.00 4.61
178 179 4.270153 TGCAGTCCCCCTCCACCT 62.270 66.667 0.00 0.00 0.00 4.00
179 180 2.936032 GCAGTCCCCCTCCACCTT 60.936 66.667 0.00 0.00 0.00 3.50
180 181 3.081554 CAGTCCCCCTCCACCTTG 58.918 66.667 0.00 0.00 0.00 3.61
181 182 2.936032 AGTCCCCCTCCACCTTGC 60.936 66.667 0.00 0.00 0.00 4.01
182 183 4.410400 GTCCCCCTCCACCTTGCG 62.410 72.222 0.00 0.00 0.00 4.85
202 203 3.055719 CTGACGGCCGCACCAAAT 61.056 61.111 28.58 2.52 39.03 2.32
203 204 1.743623 CTGACGGCCGCACCAAATA 60.744 57.895 28.58 2.34 39.03 1.40
204 205 1.078072 TGACGGCCGCACCAAATAT 60.078 52.632 28.58 0.57 39.03 1.28
205 206 1.355210 GACGGCCGCACCAAATATG 59.645 57.895 28.58 0.00 39.03 1.78
206 207 2.026014 CGGCCGCACCAAATATGC 59.974 61.111 14.67 0.00 39.03 3.14
211 212 2.655044 GCACCAAATATGCGCCGC 60.655 61.111 4.18 0.00 32.45 6.53
212 213 2.026014 CACCAAATATGCGCCGCC 59.974 61.111 6.63 0.00 0.00 6.13
213 214 3.582120 ACCAAATATGCGCCGCCG 61.582 61.111 6.63 0.00 37.57 6.46
214 215 4.326766 CCAAATATGCGCCGCCGG 62.327 66.667 6.63 0.00 34.32 6.13
215 216 4.980903 CAAATATGCGCCGCCGGC 62.981 66.667 20.42 20.42 46.75 6.13
230 231 2.677524 GGCTCCATGGTGCAGCAA 60.678 61.111 33.28 5.55 36.47 3.91
231 232 2.707849 GGCTCCATGGTGCAGCAAG 61.708 63.158 33.28 18.73 36.47 4.01
232 233 1.676635 GCTCCATGGTGCAGCAAGA 60.677 57.895 29.33 20.34 35.06 3.02
233 234 1.035932 GCTCCATGGTGCAGCAAGAT 61.036 55.000 29.33 3.22 35.06 2.40
234 235 1.471119 CTCCATGGTGCAGCAAGATT 58.529 50.000 24.18 2.78 0.00 2.40
235 236 2.646930 CTCCATGGTGCAGCAAGATTA 58.353 47.619 24.18 6.65 0.00 1.75
236 237 2.357009 CTCCATGGTGCAGCAAGATTAC 59.643 50.000 24.18 0.00 0.00 1.89
237 238 1.064505 CCATGGTGCAGCAAGATTACG 59.935 52.381 24.18 1.14 0.00 3.18
238 239 0.734889 ATGGTGCAGCAAGATTACGC 59.265 50.000 24.18 0.00 0.00 4.42
239 240 1.305219 TGGTGCAGCAAGATTACGCC 61.305 55.000 17.80 0.00 0.00 5.68
240 241 1.429423 GTGCAGCAAGATTACGCCC 59.571 57.895 0.00 0.00 0.00 6.13
241 242 1.026718 GTGCAGCAAGATTACGCCCT 61.027 55.000 0.00 0.00 0.00 5.19
242 243 0.744414 TGCAGCAAGATTACGCCCTC 60.744 55.000 0.00 0.00 0.00 4.30
243 244 1.440145 GCAGCAAGATTACGCCCTCC 61.440 60.000 0.00 0.00 0.00 4.30
581 582 4.436515 GGCTTTGCCCAACAACAC 57.563 55.556 0.00 0.00 44.06 3.32
582 583 1.519719 GGCTTTGCCCAACAACACA 59.480 52.632 0.00 0.00 44.06 3.72
583 584 0.809636 GGCTTTGCCCAACAACACAC 60.810 55.000 0.00 0.00 44.06 3.82
584 585 0.175531 GCTTTGCCCAACAACACACT 59.824 50.000 0.00 0.00 38.23 3.55
585 586 1.802508 GCTTTGCCCAACAACACACTC 60.803 52.381 0.00 0.00 38.23 3.51
586 587 0.820871 TTTGCCCAACAACACACTCC 59.179 50.000 0.00 0.00 38.23 3.85
587 588 1.380403 TTGCCCAACAACACACTCCG 61.380 55.000 0.00 0.00 31.73 4.63
588 589 2.551912 GCCCAACAACACACTCCGG 61.552 63.158 0.00 0.00 0.00 5.14
589 590 1.153046 CCCAACAACACACTCCGGT 60.153 57.895 0.00 0.00 0.00 5.28
591 592 1.444119 CCAACAACACACTCCGGTGG 61.444 60.000 8.63 2.00 46.85 4.61
592 593 1.822186 AACAACACACTCCGGTGGC 60.822 57.895 8.63 0.00 46.85 5.01
593 594 3.345808 CAACACACTCCGGTGGCG 61.346 66.667 8.63 1.05 46.85 5.69
594 595 4.619227 AACACACTCCGGTGGCGG 62.619 66.667 8.63 0.00 46.85 6.13
610 611 2.183555 GGCGACGAAGGTAGGGTG 59.816 66.667 0.00 0.00 0.00 4.61
611 612 2.345760 GGCGACGAAGGTAGGGTGA 61.346 63.158 0.00 0.00 0.00 4.02
612 613 1.139095 GCGACGAAGGTAGGGTGAG 59.861 63.158 0.00 0.00 0.00 3.51
613 614 1.807886 CGACGAAGGTAGGGTGAGG 59.192 63.158 0.00 0.00 0.00 3.86
614 615 0.964358 CGACGAAGGTAGGGTGAGGT 60.964 60.000 0.00 0.00 0.00 3.85
615 616 0.531200 GACGAAGGTAGGGTGAGGTG 59.469 60.000 0.00 0.00 0.00 4.00
616 617 0.903454 ACGAAGGTAGGGTGAGGTGG 60.903 60.000 0.00 0.00 0.00 4.61
617 618 1.602771 GAAGGTAGGGTGAGGTGGC 59.397 63.158 0.00 0.00 0.00 5.01
618 619 0.910088 GAAGGTAGGGTGAGGTGGCT 60.910 60.000 0.00 0.00 0.00 4.75
619 620 1.201429 AAGGTAGGGTGAGGTGGCTG 61.201 60.000 0.00 0.00 0.00 4.85
620 621 2.670148 GGTAGGGTGAGGTGGCTGG 61.670 68.421 0.00 0.00 0.00 4.85
621 622 2.285368 TAGGGTGAGGTGGCTGGG 60.285 66.667 0.00 0.00 0.00 4.45
622 623 3.188355 TAGGGTGAGGTGGCTGGGT 62.188 63.158 0.00 0.00 0.00 4.51
623 624 4.351054 GGGTGAGGTGGCTGGGTG 62.351 72.222 0.00 0.00 0.00 4.61
624 625 4.351054 GGTGAGGTGGCTGGGTGG 62.351 72.222 0.00 0.00 0.00 4.61
645 646 2.989422 GGCAGCGGCGAAAATTATAT 57.011 45.000 12.98 0.00 42.47 0.86
646 647 2.851534 GGCAGCGGCGAAAATTATATC 58.148 47.619 12.98 0.00 42.47 1.63
647 648 2.484264 GGCAGCGGCGAAAATTATATCT 59.516 45.455 12.98 0.00 42.47 1.98
648 649 3.682858 GGCAGCGGCGAAAATTATATCTA 59.317 43.478 12.98 0.00 42.47 1.98
649 650 4.201724 GGCAGCGGCGAAAATTATATCTAG 60.202 45.833 12.98 0.00 42.47 2.43
650 651 4.201724 GCAGCGGCGAAAATTATATCTAGG 60.202 45.833 12.98 0.00 0.00 3.02
651 652 4.929808 CAGCGGCGAAAATTATATCTAGGT 59.070 41.667 12.98 0.00 0.00 3.08
652 653 5.408604 CAGCGGCGAAAATTATATCTAGGTT 59.591 40.000 12.98 0.00 0.00 3.50
653 654 5.408604 AGCGGCGAAAATTATATCTAGGTTG 59.591 40.000 12.98 0.00 0.00 3.77
654 655 5.618561 CGGCGAAAATTATATCTAGGTTGC 58.381 41.667 0.00 0.00 0.00 4.17
655 656 5.390567 CGGCGAAAATTATATCTAGGTTGCC 60.391 44.000 0.00 0.00 0.00 4.52
656 657 5.472137 GGCGAAAATTATATCTAGGTTGCCA 59.528 40.000 0.00 0.00 36.32 4.92
657 658 6.016610 GGCGAAAATTATATCTAGGTTGCCAA 60.017 38.462 0.00 0.00 36.32 4.52
658 659 7.309194 GGCGAAAATTATATCTAGGTTGCCAAT 60.309 37.037 0.00 0.00 36.32 3.16
659 660 8.082242 GCGAAAATTATATCTAGGTTGCCAATT 58.918 33.333 0.00 0.00 0.00 2.32
660 661 9.965824 CGAAAATTATATCTAGGTTGCCAATTT 57.034 29.630 0.00 0.00 0.00 1.82
665 666 9.812347 ATTATATCTAGGTTGCCAATTTGATCA 57.188 29.630 0.00 0.00 0.00 2.92
666 667 5.841957 ATCTAGGTTGCCAATTTGATCAC 57.158 39.130 0.00 0.00 0.00 3.06
667 668 4.016444 TCTAGGTTGCCAATTTGATCACC 58.984 43.478 0.00 0.85 0.00 4.02
668 669 1.901833 AGGTTGCCAATTTGATCACCC 59.098 47.619 0.00 0.00 0.00 4.61
669 670 1.901833 GGTTGCCAATTTGATCACCCT 59.098 47.619 0.00 0.00 0.00 4.34
670 671 3.096092 GGTTGCCAATTTGATCACCCTA 58.904 45.455 0.00 0.00 0.00 3.53
671 672 3.513515 GGTTGCCAATTTGATCACCCTAA 59.486 43.478 0.00 0.00 0.00 2.69
672 673 4.162131 GGTTGCCAATTTGATCACCCTAAT 59.838 41.667 0.00 0.00 0.00 1.73
673 674 5.362430 GGTTGCCAATTTGATCACCCTAATA 59.638 40.000 0.00 0.00 0.00 0.98
674 675 6.041979 GGTTGCCAATTTGATCACCCTAATAT 59.958 38.462 0.00 0.00 0.00 1.28
675 676 7.232534 GGTTGCCAATTTGATCACCCTAATATA 59.767 37.037 0.00 0.00 0.00 0.86
676 677 8.637986 GTTGCCAATTTGATCACCCTAATATAA 58.362 33.333 0.00 0.00 0.00 0.98
677 678 8.774546 TGCCAATTTGATCACCCTAATATAAA 57.225 30.769 0.00 0.00 0.00 1.40
678 679 8.637986 TGCCAATTTGATCACCCTAATATAAAC 58.362 33.333 0.00 0.00 0.00 2.01
679 680 8.860088 GCCAATTTGATCACCCTAATATAAACT 58.140 33.333 0.00 0.00 0.00 2.66
778 779 9.575868 TTACTTGTATTAGGTTGGTCAAATTGA 57.424 29.630 0.00 0.00 0.00 2.57
779 780 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
792 793 6.237313 GTCAAATTGACAACCTAGGTGTAC 57.763 41.667 17.14 10.15 46.22 2.90
793 794 4.992319 TCAAATTGACAACCTAGGTGTACG 59.008 41.667 17.14 7.26 0.00 3.67
794 795 2.443887 TTGACAACCTAGGTGTACGC 57.556 50.000 17.14 4.43 0.00 4.42
795 796 0.241749 TGACAACCTAGGTGTACGCG 59.758 55.000 17.14 3.53 0.00 6.01
796 797 1.074872 GACAACCTAGGTGTACGCGC 61.075 60.000 17.14 0.00 0.00 6.86
797 798 1.080366 CAACCTAGGTGTACGCGCA 60.080 57.895 17.14 0.00 0.00 6.09
798 799 1.080298 AACCTAGGTGTACGCGCAC 60.080 57.895 17.14 3.42 38.56 5.34
800 801 3.245315 CTAGGTGTACGCGCACGC 61.245 66.667 14.59 14.59 45.53 5.34
804 805 4.424430 GTGTACGCGCACGCCTTG 62.424 66.667 11.99 0.00 45.53 3.61
805 806 4.953868 TGTACGCGCACGCCTTGT 62.954 61.111 5.73 4.41 45.53 3.16
806 807 2.806198 GTACGCGCACGCCTTGTA 60.806 61.111 5.73 3.39 45.53 2.41
807 808 2.049341 TACGCGCACGCCTTGTAA 60.049 55.556 5.73 0.00 45.53 2.41
808 809 1.664017 TACGCGCACGCCTTGTAAA 60.664 52.632 5.73 0.00 45.53 2.01
809 810 1.888958 TACGCGCACGCCTTGTAAAC 61.889 55.000 5.73 0.00 45.53 2.01
810 811 2.943653 GCGCACGCCTTGTAAACT 59.056 55.556 0.30 0.00 34.56 2.66
811 812 1.440353 GCGCACGCCTTGTAAACTG 60.440 57.895 0.30 0.00 34.56 3.16
812 813 1.837538 GCGCACGCCTTGTAAACTGA 61.838 55.000 0.30 0.00 34.56 3.41
813 814 0.584396 CGCACGCCTTGTAAACTGAA 59.416 50.000 0.00 0.00 0.00 3.02
814 815 1.003331 CGCACGCCTTGTAAACTGAAA 60.003 47.619 0.00 0.00 0.00 2.69
815 816 2.539953 CGCACGCCTTGTAAACTGAAAA 60.540 45.455 0.00 0.00 0.00 2.29
816 817 3.440228 GCACGCCTTGTAAACTGAAAAA 58.560 40.909 0.00 0.00 0.00 1.94
817 818 3.485743 GCACGCCTTGTAAACTGAAAAAG 59.514 43.478 0.00 0.00 0.00 2.27
818 819 4.732355 GCACGCCTTGTAAACTGAAAAAGA 60.732 41.667 0.00 0.00 0.00 2.52
819 820 4.970003 CACGCCTTGTAAACTGAAAAAGAG 59.030 41.667 0.00 0.00 0.00 2.85
820 821 4.036380 ACGCCTTGTAAACTGAAAAAGAGG 59.964 41.667 0.00 0.00 0.00 3.69
821 822 4.556699 CGCCTTGTAAACTGAAAAAGAGGG 60.557 45.833 0.00 0.00 0.00 4.30
822 823 4.583073 GCCTTGTAAACTGAAAAAGAGGGA 59.417 41.667 0.00 0.00 0.00 4.20
823 824 5.278512 GCCTTGTAAACTGAAAAAGAGGGAG 60.279 44.000 0.00 0.00 0.00 4.30
824 825 5.828328 CCTTGTAAACTGAAAAAGAGGGAGT 59.172 40.000 0.00 0.00 0.00 3.85
825 826 6.996282 CCTTGTAAACTGAAAAAGAGGGAGTA 59.004 38.462 0.00 0.00 0.00 2.59
826 827 7.501225 CCTTGTAAACTGAAAAAGAGGGAGTAA 59.499 37.037 0.00 0.00 0.00 2.24
827 828 7.797038 TGTAAACTGAAAAAGAGGGAGTAAC 57.203 36.000 0.00 0.00 0.00 2.50
828 829 7.571025 TGTAAACTGAAAAAGAGGGAGTAACT 58.429 34.615 0.00 0.00 0.00 2.24
914 915 6.705381 TCAATTCTCCGTTGAAAATTTGCATT 59.295 30.769 0.00 0.00 32.98 3.56
942 943 9.950680 CTTTGTTAGTCAATGTGTGAGTTAAAT 57.049 29.630 0.00 0.00 40.56 1.40
944 945 7.359595 TGTTAGTCAATGTGTGAGTTAAATGC 58.640 34.615 0.00 0.00 40.56 3.56
953 954 0.247695 GAGTTAAATGCGCTGCGTCC 60.248 55.000 24.04 8.35 0.00 4.79
1011 1142 5.788055 ATATCGACACGATGCTACTAGAG 57.212 43.478 15.33 0.00 46.43 2.43
1016 1147 4.611807 CGACACGATGCTACTAGAGAATCC 60.612 50.000 0.00 0.00 36.93 3.01
1149 1296 1.227089 CGCCGTCTTCATCCTCCTG 60.227 63.158 0.00 0.00 0.00 3.86
1194 1341 2.844839 GACCCCTATGCTCCCGCT 60.845 66.667 0.00 0.00 36.97 5.52
1195 1342 2.366972 ACCCCTATGCTCCCGCTT 60.367 61.111 0.00 0.00 36.97 4.68
1260 1407 1.700042 GGATGGCTCGGGACCTTGAT 61.700 60.000 0.00 0.00 0.00 2.57
1485 1637 1.714794 CAAACGTGCTCTACCTGGAG 58.285 55.000 0.00 0.00 36.50 3.86
1524 1676 5.189659 AGATAGCGTAAGTGGTGAGATTC 57.810 43.478 0.00 0.00 41.68 2.52
1527 1679 1.278238 CGTAAGTGGTGAGATTCGGC 58.722 55.000 0.00 0.00 0.00 5.54
1582 1739 2.159382 CTGGCACGGATTTGGTTTAGT 58.841 47.619 0.00 0.00 36.31 2.24
1590 1747 5.007682 ACGGATTTGGTTTAGTTGCAGTAT 58.992 37.500 0.00 0.00 0.00 2.12
1637 1797 8.055279 TGCTCTTTCTTTGTAATAAATGGGAG 57.945 34.615 0.00 0.00 0.00 4.30
1642 1802 9.657419 CTTTCTTTGTAATAAATGGGAGCAAAT 57.343 29.630 0.00 0.00 0.00 2.32
1662 1822 8.773762 GCAAATTAGTGCTAATTGAGTATGAC 57.226 34.615 15.39 5.55 42.91 3.06
1773 1952 6.817184 TCTCTCCTTCGGTATTAATTTCTGG 58.183 40.000 0.00 0.00 0.00 3.86
2052 2240 6.889301 ATTTATGTGAGCATGGGATTACAG 57.111 37.500 0.00 0.00 36.58 2.74
2059 2247 5.125417 GTGAGCATGGGATTACAGCTTTTTA 59.875 40.000 0.00 0.00 35.36 1.52
2060 2248 5.357878 TGAGCATGGGATTACAGCTTTTTAG 59.642 40.000 0.00 0.00 35.36 1.85
2061 2249 4.646492 AGCATGGGATTACAGCTTTTTAGG 59.354 41.667 0.00 0.00 29.98 2.69
2062 2250 4.402474 GCATGGGATTACAGCTTTTTAGGT 59.598 41.667 0.00 0.00 0.00 3.08
2063 2251 5.679638 GCATGGGATTACAGCTTTTTAGGTG 60.680 44.000 0.00 3.05 42.40 4.00
2064 2252 5.249780 TGGGATTACAGCTTTTTAGGTGA 57.750 39.130 10.92 0.00 40.20 4.02
2065 2253 5.826643 TGGGATTACAGCTTTTTAGGTGAT 58.173 37.500 10.92 0.00 40.20 3.06
2066 2254 5.652014 TGGGATTACAGCTTTTTAGGTGATG 59.348 40.000 10.92 0.00 40.20 3.07
2067 2255 5.652452 GGGATTACAGCTTTTTAGGTGATGT 59.348 40.000 10.92 0.00 40.20 3.06
2068 2256 6.826741 GGGATTACAGCTTTTTAGGTGATGTA 59.173 38.462 10.92 0.00 40.20 2.29
2167 2357 3.721087 ATTTCCTTGGATCGAGTGGTT 57.279 42.857 0.00 0.00 0.00 3.67
2173 2363 1.790755 TGGATCGAGTGGTTTTGACG 58.209 50.000 0.00 0.00 0.00 4.35
2269 2459 3.358111 TGGACACCTGTCTTTGTTTGA 57.642 42.857 5.44 0.00 44.20 2.69
2477 2667 2.496899 ACATGACCTGACCCATTGTC 57.503 50.000 0.00 0.00 44.72 3.18
2641 2831 3.187700 GACCTGATATTTCACGCGTCTT 58.812 45.455 9.86 0.00 0.00 3.01
2753 2943 1.842381 GCTCCCACAACAGGTAGCCT 61.842 60.000 0.00 0.00 0.00 4.58
2826 3017 3.575256 TCTTTGCAGAAAGGCACATGATT 59.425 39.130 0.00 0.00 44.86 2.57
2855 3047 5.163814 GCTTTATCAGTGGTCTAACAAGCTG 60.164 44.000 0.00 0.00 0.00 4.24
2867 3059 7.609918 TGGTCTAACAAGCTGCTTCAATATAAA 59.390 33.333 12.82 0.00 0.00 1.40
2893 3085 2.482490 GCAATGAGCCTGCTAATTTGGG 60.482 50.000 0.00 0.00 36.84 4.12
2894 3086 2.762327 CAATGAGCCTGCTAATTTGGGT 59.238 45.455 0.00 0.00 0.00 4.51
2895 3087 1.838112 TGAGCCTGCTAATTTGGGTG 58.162 50.000 0.00 0.00 0.00 4.61
2896 3088 1.106285 GAGCCTGCTAATTTGGGTGG 58.894 55.000 0.00 0.00 0.00 4.61
2981 3176 7.324178 AGTATTTAACTAGCAGACACCTTCTG 58.676 38.462 0.00 0.00 45.26 3.02
3176 3371 4.475944 CTTCCAGGTAAACTTTTGCATCG 58.524 43.478 0.00 0.00 0.00 3.84
3267 3462 5.048364 GGTATCAGAGCTGTGGTATGTAGAG 60.048 48.000 11.47 0.00 0.00 2.43
3475 3685 3.263941 GCCTGTAGCGTGGGTTTG 58.736 61.111 0.00 0.00 0.00 2.93
3476 3686 1.599797 GCCTGTAGCGTGGGTTTGT 60.600 57.895 0.00 0.00 0.00 2.83
3477 3687 1.852067 GCCTGTAGCGTGGGTTTGTG 61.852 60.000 0.00 0.00 0.00 3.33
3478 3688 0.250124 CCTGTAGCGTGGGTTTGTGA 60.250 55.000 0.00 0.00 0.00 3.58
3479 3689 1.148310 CTGTAGCGTGGGTTTGTGAG 58.852 55.000 0.00 0.00 0.00 3.51
3480 3690 0.882927 TGTAGCGTGGGTTTGTGAGC 60.883 55.000 0.00 0.00 0.00 4.26
3481 3691 1.302192 TAGCGTGGGTTTGTGAGCC 60.302 57.895 0.00 0.00 46.43 4.70
3497 3707 0.662085 AGCCGCGCTACTACTACTTC 59.338 55.000 5.56 0.00 36.99 3.01
3686 3896 2.588620 ACACCCGATAACTTTTTGCCA 58.411 42.857 0.00 0.00 0.00 4.92
3707 3917 4.321974 CCAAGGTTGAATTTAGCCTTCACC 60.322 45.833 14.37 0.00 38.96 4.02
3711 3921 1.810151 TGAATTTAGCCTTCACCGTGC 59.190 47.619 0.00 0.00 0.00 5.34
3744 3954 0.869730 GACTTGCGCGGTTTTTCCTA 59.130 50.000 8.83 0.00 0.00 2.94
3774 3984 3.957497 AGAGAGGAAGTGTCGATAGCAAT 59.043 43.478 0.00 0.00 0.00 3.56
3813 4023 1.757118 GAGACGACAAGGATCCCATCA 59.243 52.381 8.55 0.00 0.00 3.07
3826 4036 4.939399 CATCACGCTGGTGGATGA 57.061 55.556 0.00 0.00 44.50 2.92
3827 4037 2.387309 CATCACGCTGGTGGATGAC 58.613 57.895 0.00 0.00 44.50 3.06
3828 4038 1.091771 CATCACGCTGGTGGATGACC 61.092 60.000 0.00 0.00 44.50 4.02
3871 4085 2.280797 TGTGACCGAACAGCTGGC 60.281 61.111 19.93 8.76 0.00 4.85
3946 4160 4.853743 CGCTCAAACTTTGGCTCTATTTTC 59.146 41.667 1.62 0.00 0.00 2.29
4037 4252 2.047830 AGGACTGTCGGGGGATAATTC 58.952 52.381 1.07 0.00 0.00 2.17
4079 4298 0.689412 GGAAGAGGAGCTAGCTGGGT 60.689 60.000 24.99 5.80 0.00 4.51
4123 4342 3.336715 GAAATTGACACGGCCGGCC 62.337 63.158 36.69 36.69 0.00 6.13
4184 4405 2.629617 CTGCACCCAAATCAGAAGGTTT 59.370 45.455 0.00 0.00 0.00 3.27
4237 4458 3.499461 TAGCAAAAGGGCCCGTGCA 62.499 57.895 35.08 23.79 39.50 4.57
4244 4465 4.740431 GGGCCCGTGCATTGCAAC 62.740 66.667 13.94 7.00 41.47 4.17
4278 4520 6.829229 TGATAATCTTCAATGGCCATGATC 57.171 37.500 21.63 11.92 0.00 2.92
4299 4541 3.313249 TCATATTTTGCTGCATCACCGAG 59.687 43.478 1.84 0.00 0.00 4.63
4300 4542 1.825090 ATTTTGCTGCATCACCGAGA 58.175 45.000 1.84 0.00 0.00 4.04
4314 4556 5.037383 TCACCGAGATACACTATCACTCT 57.963 43.478 0.00 0.00 37.65 3.24
4322 4564 7.322461 CGAGATACACTATCACTCTCAATTTCG 59.678 40.741 0.00 0.00 37.65 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.950836 CAAGTGTTGGTGGCGATTCA 59.049 50.000 0.00 0.00 0.00 2.57
5 6 1.659794 GCAAGTGTTGGTGGCGATT 59.340 52.632 0.00 0.00 0.00 3.34
6 7 3.354678 GCAAGTGTTGGTGGCGAT 58.645 55.556 0.00 0.00 0.00 4.58
8 9 4.326766 CCGCAAGTGTTGGTGGCG 62.327 66.667 0.00 0.00 46.61 5.69
9 10 2.904866 TCCGCAAGTGTTGGTGGC 60.905 61.111 0.00 0.00 34.67 5.01
10 11 2.892334 CGTCCGCAAGTGTTGGTGG 61.892 63.158 0.00 0.00 36.00 4.61
11 12 1.885388 TCGTCCGCAAGTGTTGGTG 60.885 57.895 0.00 0.00 0.00 4.17
12 13 1.885850 GTCGTCCGCAAGTGTTGGT 60.886 57.895 0.00 0.00 0.00 3.67
13 14 2.604174 GGTCGTCCGCAAGTGTTGG 61.604 63.158 0.00 0.00 0.00 3.77
14 15 1.831389 CTGGTCGTCCGCAAGTGTTG 61.831 60.000 0.00 0.00 36.30 3.33
15 16 1.594293 CTGGTCGTCCGCAAGTGTT 60.594 57.895 0.00 0.00 36.30 3.32
16 17 2.029073 CTGGTCGTCCGCAAGTGT 59.971 61.111 0.00 0.00 36.30 3.55
17 18 3.414700 GCTGGTCGTCCGCAAGTG 61.415 66.667 9.68 0.00 36.30 3.16
18 19 3.454587 TTGCTGGTCGTCCGCAAGT 62.455 57.895 20.03 0.00 42.91 3.16
19 20 2.664851 TTGCTGGTCGTCCGCAAG 60.665 61.111 20.03 4.09 42.91 4.01
20 21 2.664851 CTTGCTGGTCGTCCGCAA 60.665 61.111 21.54 21.54 44.24 4.85
23 24 3.114616 CTGCTTGCTGGTCGTCCG 61.115 66.667 0.00 0.00 36.30 4.79
24 25 2.029844 GTCTGCTTGCTGGTCGTCC 61.030 63.158 0.00 0.00 0.00 4.79
25 26 0.880278 TTGTCTGCTTGCTGGTCGTC 60.880 55.000 0.00 0.00 0.00 4.20
26 27 0.882042 CTTGTCTGCTTGCTGGTCGT 60.882 55.000 0.00 0.00 0.00 4.34
27 28 1.864862 CTTGTCTGCTTGCTGGTCG 59.135 57.895 0.00 0.00 0.00 4.79
28 29 0.888285 AGCTTGTCTGCTTGCTGGTC 60.888 55.000 0.00 0.00 40.93 4.02
29 30 0.888285 GAGCTTGTCTGCTTGCTGGT 60.888 55.000 0.00 0.00 44.17 4.00
30 31 1.584380 GGAGCTTGTCTGCTTGCTGG 61.584 60.000 0.00 0.00 44.17 4.85
31 32 0.605860 AGGAGCTTGTCTGCTTGCTG 60.606 55.000 0.00 0.00 40.95 4.41
32 33 0.979665 TAGGAGCTTGTCTGCTTGCT 59.020 50.000 0.00 0.00 40.95 3.91
33 34 1.367659 CTAGGAGCTTGTCTGCTTGC 58.632 55.000 0.00 0.00 40.95 4.01
34 35 2.011046 GCCTAGGAGCTTGTCTGCTTG 61.011 57.143 14.75 0.00 40.95 4.01
35 36 0.251634 GCCTAGGAGCTTGTCTGCTT 59.748 55.000 14.75 0.00 40.95 3.91
36 37 1.621672 GGCCTAGGAGCTTGTCTGCT 61.622 60.000 14.75 0.00 45.91 4.24
37 38 1.153269 GGCCTAGGAGCTTGTCTGC 60.153 63.158 14.75 0.00 0.00 4.26
38 39 0.908198 AAGGCCTAGGAGCTTGTCTG 59.092 55.000 14.75 0.00 0.00 3.51
39 40 1.199615 GAAGGCCTAGGAGCTTGTCT 58.800 55.000 14.75 0.00 0.00 3.41
40 41 0.179234 GGAAGGCCTAGGAGCTTGTC 59.821 60.000 14.75 0.00 0.00 3.18
41 42 1.275421 GGGAAGGCCTAGGAGCTTGT 61.275 60.000 14.75 0.00 0.00 3.16
42 43 1.529309 GGGAAGGCCTAGGAGCTTG 59.471 63.158 14.75 0.00 0.00 4.01
43 44 1.694525 GGGGAAGGCCTAGGAGCTT 60.695 63.158 14.75 0.00 0.00 3.74
44 45 2.040359 GGGGAAGGCCTAGGAGCT 60.040 66.667 14.75 0.00 0.00 4.09
45 46 1.988982 CTTGGGGAAGGCCTAGGAGC 61.989 65.000 14.75 0.00 0.00 4.70
46 47 1.988982 GCTTGGGGAAGGCCTAGGAG 61.989 65.000 14.75 0.00 0.00 3.69
47 48 2.001269 GCTTGGGGAAGGCCTAGGA 61.001 63.158 14.75 0.00 0.00 2.94
48 49 2.597903 GCTTGGGGAAGGCCTAGG 59.402 66.667 5.16 3.67 0.00 3.02
49 50 2.190578 CGCTTGGGGAAGGCCTAG 59.809 66.667 5.16 0.00 0.00 3.02
50 51 4.109675 GCGCTTGGGGAAGGCCTA 62.110 66.667 5.16 0.00 0.00 3.93
56 57 4.634703 TTCAGCGCGCTTGGGGAA 62.635 61.111 34.58 27.64 0.00 3.97
59 60 4.093952 CTGTTCAGCGCGCTTGGG 62.094 66.667 34.58 21.42 0.00 4.12
60 61 3.349006 ACTGTTCAGCGCGCTTGG 61.349 61.111 34.58 22.26 0.00 3.61
61 62 2.127496 CACTGTTCAGCGCGCTTG 60.127 61.111 34.58 25.79 0.00 4.01
62 63 4.017877 GCACTGTTCAGCGCGCTT 62.018 61.111 34.58 13.96 0.00 4.68
65 66 4.374702 GTGGCACTGTTCAGCGCG 62.375 66.667 11.13 0.00 0.00 6.86
66 67 2.959357 GAGTGGCACTGTTCAGCGC 61.959 63.158 27.45 0.00 0.00 5.92
67 68 1.595109 TGAGTGGCACTGTTCAGCG 60.595 57.895 27.45 0.00 0.00 5.18
68 69 1.835483 CGTGAGTGGCACTGTTCAGC 61.835 60.000 27.45 9.97 45.49 4.26
69 70 1.835483 GCGTGAGTGGCACTGTTCAG 61.835 60.000 27.45 12.30 45.49 3.02
70 71 1.887242 GCGTGAGTGGCACTGTTCA 60.887 57.895 27.45 14.62 45.49 3.18
71 72 2.607892 GGCGTGAGTGGCACTGTTC 61.608 63.158 27.45 11.84 45.49 3.18
72 73 2.591715 GGCGTGAGTGGCACTGTT 60.592 61.111 27.45 0.00 45.49 3.16
73 74 3.814615 CTGGCGTGAGTGGCACTGT 62.815 63.158 27.45 0.70 45.49 3.55
74 75 3.046087 CTGGCGTGAGTGGCACTG 61.046 66.667 27.45 12.21 45.49 3.66
75 76 3.521529 GACTGGCGTGAGTGGCACT 62.522 63.158 22.26 22.26 45.49 4.40
76 77 3.044305 GACTGGCGTGAGTGGCAC 61.044 66.667 10.29 10.29 44.21 5.01
77 78 4.314440 GGACTGGCGTGAGTGGCA 62.314 66.667 0.00 0.00 42.76 4.92
96 97 3.414700 GAGGAGTGGTGTTGCGCG 61.415 66.667 0.00 0.00 0.00 6.86
97 98 3.050275 GGAGGAGTGGTGTTGCGC 61.050 66.667 0.00 0.00 0.00 6.09
98 99 2.358737 GGGAGGAGTGGTGTTGCG 60.359 66.667 0.00 0.00 0.00 4.85
99 100 0.678048 GATGGGAGGAGTGGTGTTGC 60.678 60.000 0.00 0.00 0.00 4.17
100 101 0.035056 GGATGGGAGGAGTGGTGTTG 60.035 60.000 0.00 0.00 0.00 3.33
101 102 0.475632 TGGATGGGAGGAGTGGTGTT 60.476 55.000 0.00 0.00 0.00 3.32
102 103 1.160870 TGGATGGGAGGAGTGGTGT 59.839 57.895 0.00 0.00 0.00 4.16
103 104 1.200760 TGTGGATGGGAGGAGTGGTG 61.201 60.000 0.00 0.00 0.00 4.17
104 105 1.160870 TGTGGATGGGAGGAGTGGT 59.839 57.895 0.00 0.00 0.00 4.16
105 106 1.604378 GTGTGGATGGGAGGAGTGG 59.396 63.158 0.00 0.00 0.00 4.00
106 107 1.219124 CGTGTGGATGGGAGGAGTG 59.781 63.158 0.00 0.00 0.00 3.51
107 108 1.229209 ACGTGTGGATGGGAGGAGT 60.229 57.895 0.00 0.00 0.00 3.85
108 109 1.219124 CACGTGTGGATGGGAGGAG 59.781 63.158 7.58 0.00 0.00 3.69
109 110 1.535444 ACACGTGTGGATGGGAGGA 60.535 57.895 22.71 0.00 34.19 3.71
110 111 1.375908 CACACGTGTGGATGGGAGG 60.376 63.158 35.65 11.35 42.10 4.30
111 112 2.034879 GCACACGTGTGGATGGGAG 61.035 63.158 40.73 20.05 45.72 4.30
112 113 2.031919 GCACACGTGTGGATGGGA 59.968 61.111 40.73 0.00 45.72 4.37
113 114 3.422303 CGCACACGTGTGGATGGG 61.422 66.667 40.73 24.37 45.72 4.00
114 115 2.356913 TCGCACACGTGTGGATGG 60.357 61.111 40.73 22.11 45.72 3.51
115 116 3.015293 GCTCGCACACGTGTGGATG 62.015 63.158 40.73 27.99 45.72 3.51
116 117 2.738521 GCTCGCACACGTGTGGAT 60.739 61.111 40.73 10.78 45.72 3.41
117 118 4.214327 TGCTCGCACACGTGTGGA 62.214 61.111 40.73 33.20 45.72 4.02
118 119 3.705638 CTGCTCGCACACGTGTGG 61.706 66.667 40.73 31.46 45.72 4.17
141 142 4.864334 GGGGTGGCGCAGATCTGG 62.864 72.222 23.89 14.64 0.00 3.86
161 162 3.810687 AAGGTGGAGGGGGACTGCA 62.811 63.158 0.00 0.00 46.04 4.41
162 163 2.936032 AAGGTGGAGGGGGACTGC 60.936 66.667 0.00 0.00 38.16 4.40
163 164 3.081554 CAAGGTGGAGGGGGACTG 58.918 66.667 0.00 0.00 0.00 3.51
164 165 2.936032 GCAAGGTGGAGGGGGACT 60.936 66.667 0.00 0.00 0.00 3.85
165 166 4.410400 CGCAAGGTGGAGGGGGAC 62.410 72.222 0.00 0.00 0.00 4.46
185 186 1.095228 ATATTTGGTGCGGCCGTCAG 61.095 55.000 28.70 0.00 41.21 3.51
186 187 1.078072 ATATTTGGTGCGGCCGTCA 60.078 52.632 28.70 21.98 41.21 4.35
187 188 1.355210 CATATTTGGTGCGGCCGTC 59.645 57.895 28.70 19.46 41.21 4.79
188 189 2.770589 GCATATTTGGTGCGGCCGT 61.771 57.895 28.70 7.28 41.21 5.68
189 190 2.026014 GCATATTTGGTGCGGCCG 59.974 61.111 24.05 24.05 41.21 6.13
194 195 2.655044 GCGGCGCATATTTGGTGC 60.655 61.111 29.21 0.00 40.91 5.01
195 196 2.026014 GGCGGCGCATATTTGGTG 59.974 61.111 34.36 0.00 0.00 4.17
196 197 3.582120 CGGCGGCGCATATTTGGT 61.582 61.111 34.36 0.00 0.00 3.67
197 198 4.326766 CCGGCGGCGCATATTTGG 62.327 66.667 34.36 19.48 0.00 3.28
198 199 4.980903 GCCGGCGGCGCATATTTG 62.981 66.667 37.09 14.89 39.62 2.32
215 216 1.471119 AATCTTGCTGCACCATGGAG 58.529 50.000 21.47 12.70 38.97 3.86
216 217 2.368439 GTAATCTTGCTGCACCATGGA 58.632 47.619 21.47 0.00 0.00 3.41
217 218 1.064505 CGTAATCTTGCTGCACCATGG 59.935 52.381 11.19 11.19 0.00 3.66
218 219 1.532505 GCGTAATCTTGCTGCACCATG 60.533 52.381 0.00 0.00 0.00 3.66
219 220 0.734889 GCGTAATCTTGCTGCACCAT 59.265 50.000 0.00 0.00 0.00 3.55
220 221 1.305219 GGCGTAATCTTGCTGCACCA 61.305 55.000 0.00 0.00 0.00 4.17
221 222 1.429423 GGCGTAATCTTGCTGCACC 59.571 57.895 0.00 0.00 0.00 5.01
222 223 1.026718 AGGGCGTAATCTTGCTGCAC 61.027 55.000 0.00 0.00 0.00 4.57
223 224 0.744414 GAGGGCGTAATCTTGCTGCA 60.744 55.000 0.00 0.00 0.00 4.41
224 225 1.440145 GGAGGGCGTAATCTTGCTGC 61.440 60.000 0.00 0.00 0.00 5.25
225 226 2.695314 GGAGGGCGTAATCTTGCTG 58.305 57.895 0.00 0.00 0.00 4.41
565 566 0.175531 AGTGTGTTGTTGGGCAAAGC 59.824 50.000 0.00 0.00 39.03 3.51
566 567 1.202405 GGAGTGTGTTGTTGGGCAAAG 60.202 52.381 0.00 0.00 39.03 2.77
567 568 0.820871 GGAGTGTGTTGTTGGGCAAA 59.179 50.000 0.00 0.00 39.03 3.68
568 569 1.380403 CGGAGTGTGTTGTTGGGCAA 61.380 55.000 0.00 0.00 34.16 4.52
569 570 1.821759 CGGAGTGTGTTGTTGGGCA 60.822 57.895 0.00 0.00 0.00 5.36
570 571 2.551912 CCGGAGTGTGTTGTTGGGC 61.552 63.158 0.00 0.00 0.00 5.36
571 572 1.153046 ACCGGAGTGTGTTGTTGGG 60.153 57.895 9.46 0.00 0.00 4.12
572 573 1.444119 CCACCGGAGTGTGTTGTTGG 61.444 60.000 9.46 0.00 42.88 3.77
573 574 2.021722 CCACCGGAGTGTGTTGTTG 58.978 57.895 9.46 0.00 42.88 3.33
574 575 1.822186 GCCACCGGAGTGTGTTGTT 60.822 57.895 9.46 0.00 42.88 2.83
575 576 2.203153 GCCACCGGAGTGTGTTGT 60.203 61.111 9.46 0.00 42.88 3.32
576 577 3.345808 CGCCACCGGAGTGTGTTG 61.346 66.667 9.46 0.00 42.88 3.33
588 589 4.424566 TACCTTCGTCGCCGCCAC 62.425 66.667 0.00 0.00 0.00 5.01
589 590 4.124351 CTACCTTCGTCGCCGCCA 62.124 66.667 0.00 0.00 0.00 5.69
590 591 4.867599 CCTACCTTCGTCGCCGCC 62.868 72.222 0.00 0.00 0.00 6.13
591 592 4.867599 CCCTACCTTCGTCGCCGC 62.868 72.222 0.00 0.00 0.00 6.53
592 593 3.446570 ACCCTACCTTCGTCGCCG 61.447 66.667 0.00 0.00 0.00 6.46
593 594 2.183555 CACCCTACCTTCGTCGCC 59.816 66.667 0.00 0.00 0.00 5.54
594 595 1.139095 CTCACCCTACCTTCGTCGC 59.861 63.158 0.00 0.00 0.00 5.19
595 596 0.964358 ACCTCACCCTACCTTCGTCG 60.964 60.000 0.00 0.00 0.00 5.12
596 597 0.531200 CACCTCACCCTACCTTCGTC 59.469 60.000 0.00 0.00 0.00 4.20
597 598 0.903454 CCACCTCACCCTACCTTCGT 60.903 60.000 0.00 0.00 0.00 3.85
598 599 1.898154 CCACCTCACCCTACCTTCG 59.102 63.158 0.00 0.00 0.00 3.79
599 600 0.910088 AGCCACCTCACCCTACCTTC 60.910 60.000 0.00 0.00 0.00 3.46
600 601 1.161113 AGCCACCTCACCCTACCTT 59.839 57.895 0.00 0.00 0.00 3.50
601 602 1.613630 CAGCCACCTCACCCTACCT 60.614 63.158 0.00 0.00 0.00 3.08
602 603 2.670148 CCAGCCACCTCACCCTACC 61.670 68.421 0.00 0.00 0.00 3.18
603 604 2.670148 CCCAGCCACCTCACCCTAC 61.670 68.421 0.00 0.00 0.00 3.18
604 605 2.285368 CCCAGCCACCTCACCCTA 60.285 66.667 0.00 0.00 0.00 3.53
605 606 4.599500 ACCCAGCCACCTCACCCT 62.599 66.667 0.00 0.00 0.00 4.34
606 607 4.351054 CACCCAGCCACCTCACCC 62.351 72.222 0.00 0.00 0.00 4.61
607 608 4.351054 CCACCCAGCCACCTCACC 62.351 72.222 0.00 0.00 0.00 4.02
624 625 2.662091 ATAATTTTCGCCGCTGCCGC 62.662 55.000 2.78 2.78 0.00 6.53
625 626 0.584396 TATAATTTTCGCCGCTGCCG 59.416 50.000 0.00 0.00 0.00 5.69
626 627 2.484264 AGATATAATTTTCGCCGCTGCC 59.516 45.455 0.00 0.00 0.00 4.85
627 628 3.813529 AGATATAATTTTCGCCGCTGC 57.186 42.857 0.00 0.00 0.00 5.25
628 629 4.929808 ACCTAGATATAATTTTCGCCGCTG 59.070 41.667 0.00 0.00 0.00 5.18
629 630 5.148651 ACCTAGATATAATTTTCGCCGCT 57.851 39.130 0.00 0.00 0.00 5.52
630 631 5.618561 CAACCTAGATATAATTTTCGCCGC 58.381 41.667 0.00 0.00 0.00 6.53
631 632 5.390567 GGCAACCTAGATATAATTTTCGCCG 60.391 44.000 0.00 0.00 0.00 6.46
632 633 5.472137 TGGCAACCTAGATATAATTTTCGCC 59.528 40.000 0.00 0.00 0.00 5.54
633 634 6.554334 TGGCAACCTAGATATAATTTTCGC 57.446 37.500 0.00 0.00 0.00 4.70
634 635 9.965824 AAATTGGCAACCTAGATATAATTTTCG 57.034 29.630 0.00 0.00 0.00 3.46
639 640 9.812347 TGATCAAATTGGCAACCTAGATATAAT 57.188 29.630 0.00 0.00 0.00 1.28
640 641 9.066892 GTGATCAAATTGGCAACCTAGATATAA 57.933 33.333 0.00 0.00 0.00 0.98
641 642 7.665559 GGTGATCAAATTGGCAACCTAGATATA 59.334 37.037 0.00 0.00 0.00 0.86
642 643 6.491403 GGTGATCAAATTGGCAACCTAGATAT 59.509 38.462 0.00 0.00 0.00 1.63
643 644 5.827797 GGTGATCAAATTGGCAACCTAGATA 59.172 40.000 0.00 0.00 0.00 1.98
644 645 4.646492 GGTGATCAAATTGGCAACCTAGAT 59.354 41.667 0.00 4.00 0.00 1.98
645 646 4.016444 GGTGATCAAATTGGCAACCTAGA 58.984 43.478 0.00 0.00 0.00 2.43
646 647 3.131046 GGGTGATCAAATTGGCAACCTAG 59.869 47.826 13.81 0.00 35.26 3.02
647 648 3.096092 GGGTGATCAAATTGGCAACCTA 58.904 45.455 13.81 0.00 35.26 3.08
648 649 1.901833 GGGTGATCAAATTGGCAACCT 59.098 47.619 13.81 0.00 35.26 3.50
649 650 1.901833 AGGGTGATCAAATTGGCAACC 59.098 47.619 13.40 13.40 38.39 3.77
650 651 4.799564 TTAGGGTGATCAAATTGGCAAC 57.200 40.909 0.00 0.00 0.00 4.17
651 652 8.774546 TTATATTAGGGTGATCAAATTGGCAA 57.225 30.769 0.68 0.68 0.00 4.52
652 653 8.637986 GTTTATATTAGGGTGATCAAATTGGCA 58.362 33.333 0.00 0.00 0.00 4.92
653 654 8.860088 AGTTTATATTAGGGTGATCAAATTGGC 58.140 33.333 0.00 0.00 0.00 4.52
752 753 9.575868 TCAATTTGACCAACCTAATACAAGTAA 57.424 29.630 0.00 0.00 0.00 2.24
753 754 9.005777 GTCAATTTGACCAACCTAATACAAGTA 57.994 33.333 17.07 0.00 41.37 2.24
754 755 7.504238 TGTCAATTTGACCAACCTAATACAAGT 59.496 33.333 23.22 0.00 46.40 3.16
755 756 7.881142 TGTCAATTTGACCAACCTAATACAAG 58.119 34.615 23.22 0.00 46.40 3.16
756 757 7.825331 TGTCAATTTGACCAACCTAATACAA 57.175 32.000 23.22 1.00 46.40 2.41
757 758 7.255660 GGTTGTCAATTTGACCAACCTAATACA 60.256 37.037 31.01 12.53 46.40 2.29
758 759 7.088272 GGTTGTCAATTTGACCAACCTAATAC 58.912 38.462 31.01 17.94 46.40 1.89
759 760 7.222000 GGTTGTCAATTTGACCAACCTAATA 57.778 36.000 31.01 12.97 46.40 0.98
760 761 6.096673 GGTTGTCAATTTGACCAACCTAAT 57.903 37.500 31.01 0.00 46.40 1.73
761 762 5.523438 GGTTGTCAATTTGACCAACCTAA 57.477 39.130 31.01 17.90 46.40 2.69
764 765 4.022329 CCTAGGTTGTCAATTTGACCAACC 60.022 45.833 31.10 31.10 46.40 3.77
765 766 4.583073 ACCTAGGTTGTCAATTTGACCAAC 59.417 41.667 23.22 22.93 46.40 3.77
766 767 4.582656 CACCTAGGTTGTCAATTTGACCAA 59.417 41.667 23.22 15.47 46.40 3.67
767 768 4.141287 CACCTAGGTTGTCAATTTGACCA 58.859 43.478 23.22 12.38 46.40 4.02
768 769 4.142038 ACACCTAGGTTGTCAATTTGACC 58.858 43.478 23.22 11.44 46.40 4.02
770 771 4.992319 CGTACACCTAGGTTGTCAATTTGA 59.008 41.667 13.15 0.00 0.00 2.69
771 772 4.378046 GCGTACACCTAGGTTGTCAATTTG 60.378 45.833 13.15 0.00 0.00 2.32
772 773 3.749609 GCGTACACCTAGGTTGTCAATTT 59.250 43.478 13.15 0.00 0.00 1.82
773 774 3.332034 GCGTACACCTAGGTTGTCAATT 58.668 45.455 13.15 0.00 0.00 2.32
774 775 2.673043 CGCGTACACCTAGGTTGTCAAT 60.673 50.000 13.15 0.00 0.00 2.57
775 776 1.336148 CGCGTACACCTAGGTTGTCAA 60.336 52.381 13.15 0.00 0.00 3.18
776 777 0.241749 CGCGTACACCTAGGTTGTCA 59.758 55.000 13.15 0.00 0.00 3.58
777 778 1.074872 GCGCGTACACCTAGGTTGTC 61.075 60.000 13.15 4.32 0.00 3.18
778 779 1.080298 GCGCGTACACCTAGGTTGT 60.080 57.895 13.15 15.96 0.00 3.32
779 780 1.080366 TGCGCGTACACCTAGGTTG 60.080 57.895 13.15 10.64 0.00 3.77
780 781 1.080298 GTGCGCGTACACCTAGGTT 60.080 57.895 22.80 6.76 34.35 3.50
781 782 2.570181 GTGCGCGTACACCTAGGT 59.430 61.111 22.80 9.21 34.35 3.08
782 783 2.578713 CGTGCGCGTACACCTAGG 60.579 66.667 26.55 7.41 37.25 3.02
783 784 3.245315 GCGTGCGCGTACACCTAG 61.245 66.667 26.55 11.17 40.81 3.02
784 785 4.781959 GGCGTGCGCGTACACCTA 62.782 66.667 24.50 0.00 43.06 3.08
787 788 4.424430 CAAGGCGTGCGCGTACAC 62.424 66.667 26.55 17.38 43.06 2.90
788 789 3.554989 TACAAGGCGTGCGCGTACA 62.555 57.895 26.55 5.10 43.06 2.90
789 790 1.888958 TTTACAAGGCGTGCGCGTAC 61.889 55.000 22.18 17.94 43.06 3.67
790 791 1.664017 TTTACAAGGCGTGCGCGTA 60.664 52.632 22.18 0.00 43.06 4.42
791 792 2.968156 TTTACAAGGCGTGCGCGT 60.968 55.556 22.18 8.25 43.06 6.01
792 793 2.498887 GTTTACAAGGCGTGCGCG 60.499 61.111 16.86 16.86 43.06 6.86
793 794 1.440353 CAGTTTACAAGGCGTGCGC 60.440 57.895 8.17 8.17 41.06 6.09
794 795 0.584396 TTCAGTTTACAAGGCGTGCG 59.416 50.000 0.00 0.00 0.00 5.34
795 796 2.766970 TTTCAGTTTACAAGGCGTGC 57.233 45.000 0.00 0.00 0.00 5.34
796 797 4.915704 TCTTTTTCAGTTTACAAGGCGTG 58.084 39.130 0.00 0.00 0.00 5.34
797 798 4.036380 CCTCTTTTTCAGTTTACAAGGCGT 59.964 41.667 0.00 0.00 0.00 5.68
798 799 4.537015 CCTCTTTTTCAGTTTACAAGGCG 58.463 43.478 0.00 0.00 0.00 5.52
799 800 4.583073 TCCCTCTTTTTCAGTTTACAAGGC 59.417 41.667 0.00 0.00 0.00 4.35
800 801 5.828328 ACTCCCTCTTTTTCAGTTTACAAGG 59.172 40.000 0.00 0.00 0.00 3.61
801 802 6.944234 ACTCCCTCTTTTTCAGTTTACAAG 57.056 37.500 0.00 0.00 0.00 3.16
802 803 8.050930 AGTTACTCCCTCTTTTTCAGTTTACAA 58.949 33.333 0.00 0.00 0.00 2.41
803 804 7.571025 AGTTACTCCCTCTTTTTCAGTTTACA 58.429 34.615 0.00 0.00 0.00 2.41
804 805 8.447924 AAGTTACTCCCTCTTTTTCAGTTTAC 57.552 34.615 0.00 0.00 0.00 2.01
805 806 9.470399 AAAAGTTACTCCCTCTTTTTCAGTTTA 57.530 29.630 0.00 0.00 37.90 2.01
806 807 7.956328 AAAGTTACTCCCTCTTTTTCAGTTT 57.044 32.000 0.00 0.00 0.00 2.66
807 808 7.956328 AAAAGTTACTCCCTCTTTTTCAGTT 57.044 32.000 0.00 0.00 37.90 3.16
808 809 7.956328 AAAAAGTTACTCCCTCTTTTTCAGT 57.044 32.000 8.42 0.00 43.31 3.41
839 840 5.104562 GGCAACTTACAGTGAAAAGGTAC 57.895 43.478 0.00 0.00 0.00 3.34
898 899 9.566624 CTAACAAAGTAATGCAAATTTTCAACG 57.433 29.630 0.00 0.00 0.00 4.10
907 908 8.194104 ACACATTGACTAACAAAGTAATGCAAA 58.806 29.630 0.00 0.00 42.03 3.68
914 915 9.602568 TTAACTCACACATTGACTAACAAAGTA 57.397 29.630 0.00 0.00 42.03 2.24
930 931 1.606606 GCAGCGCATTTAACTCACAC 58.393 50.000 11.47 0.00 0.00 3.82
942 943 4.600576 TGAACTGGACGCAGCGCA 62.601 61.111 16.61 4.64 0.00 6.09
944 945 0.666274 TTAGTGAACTGGACGCAGCG 60.666 55.000 14.82 14.82 0.00 5.18
978 1004 3.200685 GTGTCGATATACACGCGTTTG 57.799 47.619 10.22 0.81 40.31 2.93
1011 1142 1.072331 AGGTGTGTGGTCTGTGGATTC 59.928 52.381 0.00 0.00 0.00 2.52
1016 1147 1.299541 GTTCAGGTGTGTGGTCTGTG 58.700 55.000 0.00 0.00 0.00 3.66
1194 1341 2.116772 ACGGGACCACGAGGAGAA 59.883 61.111 5.68 0.00 38.69 2.87
1195 1342 2.675423 CACGGGACCACGAGGAGA 60.675 66.667 5.68 0.00 38.69 3.71
1248 1395 2.892640 CGCTCATCAAGGTCCCGA 59.107 61.111 0.00 0.00 0.00 5.14
1275 1422 2.358247 TCGCCGCCCTTCAAGAAC 60.358 61.111 0.00 0.00 0.00 3.01
1524 1676 2.399611 GCGGTTGATTCGAAGCCG 59.600 61.111 21.09 21.09 44.60 5.52
1527 1679 0.378257 CCATGGCGGTTGATTCGAAG 59.622 55.000 3.35 0.00 0.00 3.79
1553 1705 1.647545 ATCCGTGCCAGCAACAATCG 61.648 55.000 0.00 0.00 0.00 3.34
1568 1724 3.915437 ACTGCAACTAAACCAAATCCG 57.085 42.857 0.00 0.00 0.00 4.18
1590 1747 2.715749 ATTGTCATCTCGGATTGGCA 57.284 45.000 0.00 0.00 0.00 4.92
1637 1797 8.616076 AGTCATACTCAATTAGCACTAATTTGC 58.384 33.333 11.96 0.00 42.11 3.68
1642 1802 9.582431 GTACAAGTCATACTCAATTAGCACTAA 57.418 33.333 0.00 0.00 0.00 2.24
1643 1803 8.195436 GGTACAAGTCATACTCAATTAGCACTA 58.805 37.037 0.00 0.00 0.00 2.74
1662 1822 0.326264 AGCCTTCCTGCAGGTACAAG 59.674 55.000 31.58 25.43 36.15 3.16
1936 2124 6.225981 ACATACTGAAGTGATACATGCTCA 57.774 37.500 0.00 0.00 0.00 4.26
2022 2210 7.658525 TCCCATGCTCACATAAATACAAATT 57.341 32.000 0.00 0.00 33.67 1.82
2026 2214 7.286313 TGTAATCCCATGCTCACATAAATACA 58.714 34.615 0.00 0.00 33.67 2.29
2028 2216 6.430925 GCTGTAATCCCATGCTCACATAAATA 59.569 38.462 0.00 0.00 33.67 1.40
2033 2221 2.174210 AGCTGTAATCCCATGCTCACAT 59.826 45.455 0.00 0.00 36.79 3.21
2034 2222 1.561076 AGCTGTAATCCCATGCTCACA 59.439 47.619 0.00 0.00 0.00 3.58
2052 2240 6.202954 ACGCATAGATACATCACCTAAAAAGC 59.797 38.462 0.00 0.00 0.00 3.51
2059 2247 2.965831 ACCACGCATAGATACATCACCT 59.034 45.455 0.00 0.00 0.00 4.00
2060 2248 3.386768 ACCACGCATAGATACATCACC 57.613 47.619 0.00 0.00 0.00 4.02
2061 2249 5.926542 ACAATACCACGCATAGATACATCAC 59.073 40.000 0.00 0.00 0.00 3.06
2062 2250 6.096673 ACAATACCACGCATAGATACATCA 57.903 37.500 0.00 0.00 0.00 3.07
2063 2251 6.645003 TCAACAATACCACGCATAGATACATC 59.355 38.462 0.00 0.00 0.00 3.06
2064 2252 6.521162 TCAACAATACCACGCATAGATACAT 58.479 36.000 0.00 0.00 0.00 2.29
2065 2253 5.908341 TCAACAATACCACGCATAGATACA 58.092 37.500 0.00 0.00 0.00 2.29
2066 2254 6.213677 TCTCAACAATACCACGCATAGATAC 58.786 40.000 0.00 0.00 0.00 2.24
2067 2255 6.399639 TCTCAACAATACCACGCATAGATA 57.600 37.500 0.00 0.00 0.00 1.98
2068 2256 5.276461 TCTCAACAATACCACGCATAGAT 57.724 39.130 0.00 0.00 0.00 1.98
2167 2357 3.536956 AGAACTCCAGTTGACGTCAAA 57.463 42.857 31.20 15.67 38.56 2.69
2173 2363 2.550180 GCCAAGAAGAACTCCAGTTGAC 59.450 50.000 0.00 0.00 38.56 3.18
2269 2459 9.765795 GATGAAGCACTAAGGTTAACTGTATAT 57.234 33.333 5.42 0.00 38.24 0.86
2477 2667 7.992008 TCATGCCAATATGATGCTATATGTTG 58.008 34.615 0.00 0.00 32.39 3.33
2641 2831 6.550938 ATGGAGTCAGTGACTAATTCATCA 57.449 37.500 25.53 14.32 43.53 3.07
2753 2943 5.637006 AACAGAAAAGTTGTGTTGTAGCA 57.363 34.783 3.02 0.00 44.32 3.49
2826 3017 7.575414 TGTTAGACCACTGATAAAGCAAAAA 57.425 32.000 0.00 0.00 0.00 1.94
2848 3040 6.921857 GCATGATTTATATTGAAGCAGCTTGT 59.078 34.615 13.91 0.75 0.00 3.16
2855 3047 7.063074 GGCTCATTGCATGATTTATATTGAAGC 59.937 37.037 0.00 0.00 45.15 3.86
2877 3069 1.106285 CCACCCAAATTAGCAGGCTC 58.894 55.000 0.00 0.00 0.00 4.70
2893 3085 1.486439 CCAAATGCACGAACAACCAC 58.514 50.000 0.00 0.00 0.00 4.16
2894 3086 0.249238 GCCAAATGCACGAACAACCA 60.249 50.000 0.00 0.00 40.77 3.67
2895 3087 2.516486 GCCAAATGCACGAACAACC 58.484 52.632 0.00 0.00 40.77 3.77
2981 3176 6.260271 AGTTCTAGTAAAGTTTGCACAACTCC 59.740 38.462 12.60 6.43 0.00 3.85
3176 3371 9.113838 TCATTATCTTCAGGATAAACTTTCTGC 57.886 33.333 0.00 0.00 46.17 4.26
3267 3462 0.032267 GGGCTAGCACATCGTACTCC 59.968 60.000 18.24 0.00 0.00 3.85
3470 3680 2.740826 TAGCGCGGCTCACAAACC 60.741 61.111 8.83 0.00 40.44 3.27
3471 3681 0.734942 TAGTAGCGCGGCTCACAAAC 60.735 55.000 8.83 0.32 40.44 2.93
3472 3682 0.734942 GTAGTAGCGCGGCTCACAAA 60.735 55.000 8.83 0.00 40.44 2.83
3473 3683 1.153901 GTAGTAGCGCGGCTCACAA 60.154 57.895 8.83 0.00 40.44 3.33
3474 3684 0.745486 TAGTAGTAGCGCGGCTCACA 60.745 55.000 8.83 0.00 40.44 3.58
3475 3685 0.316854 GTAGTAGTAGCGCGGCTCAC 60.317 60.000 8.83 5.18 40.44 3.51
3476 3686 0.463295 AGTAGTAGTAGCGCGGCTCA 60.463 55.000 8.83 0.00 40.44 4.26
3477 3687 0.662085 AAGTAGTAGTAGCGCGGCTC 59.338 55.000 8.83 0.00 40.44 4.70
3478 3688 0.662085 GAAGTAGTAGTAGCGCGGCT 59.338 55.000 8.83 8.38 43.41 5.52
3479 3689 0.379669 TGAAGTAGTAGTAGCGCGGC 59.620 55.000 8.83 0.00 0.00 6.53
3480 3690 1.399440 TGTGAAGTAGTAGTAGCGCGG 59.601 52.381 8.83 0.00 0.00 6.46
3481 3691 2.095532 ACTGTGAAGTAGTAGTAGCGCG 59.904 50.000 0.00 0.00 0.00 6.86
3482 3692 3.761311 ACTGTGAAGTAGTAGTAGCGC 57.239 47.619 0.00 0.00 0.00 5.92
3497 3707 1.837439 TCCCTACCCAATGCTACTGTG 59.163 52.381 0.00 0.00 0.00 3.66
3575 3785 1.880027 CTACTCGGCAAAAGGTTTGCT 59.120 47.619 21.32 7.74 44.36 3.91
3686 3896 3.506067 CGGTGAAGGCTAAATTCAACCTT 59.494 43.478 5.73 5.73 45.13 3.50
3707 3917 1.714460 GTCAAGTACGAAGACTGCACG 59.286 52.381 0.00 0.00 0.00 5.34
3711 3921 2.405357 CGCAAGTCAAGTACGAAGACTG 59.595 50.000 15.38 11.61 41.45 3.51
3744 3954 6.531503 TCGACACTTCCTCTCTTTCATTAT 57.468 37.500 0.00 0.00 0.00 1.28
3793 4003 1.757118 TGATGGGATCCTTGTCGTCTC 59.243 52.381 12.58 0.00 0.00 3.36
3824 4034 1.672030 CATGGCAGCTGTTCGGTCA 60.672 57.895 16.64 0.00 0.00 4.02
3825 4035 1.639298 GACATGGCAGCTGTTCGGTC 61.639 60.000 16.64 14.13 0.00 4.79
3826 4036 1.672356 GACATGGCAGCTGTTCGGT 60.672 57.895 16.64 9.17 0.00 4.69
3827 4037 1.028330 ATGACATGGCAGCTGTTCGG 61.028 55.000 16.64 5.83 0.00 4.30
3828 4038 0.806868 AATGACATGGCAGCTGTTCG 59.193 50.000 16.64 4.33 0.00 3.95
3829 4039 4.357142 CATAAATGACATGGCAGCTGTTC 58.643 43.478 16.64 8.86 0.00 3.18
3830 4040 3.429822 GCATAAATGACATGGCAGCTGTT 60.430 43.478 16.64 0.95 0.00 3.16
3969 4184 6.149474 CGAAACACATCAGGAAAATAGAACCT 59.851 38.462 0.00 0.00 34.02 3.50
3972 4187 5.705441 AGCGAAACACATCAGGAAAATAGAA 59.295 36.000 0.00 0.00 0.00 2.10
3981 4196 2.420022 CCCTAAAGCGAAACACATCAGG 59.580 50.000 0.00 0.00 0.00 3.86
4037 4252 3.063180 ACGTAACAACTCCTACTCGATCG 59.937 47.826 9.36 9.36 0.00 3.69
4079 4298 3.114606 TCATCACCTAGCCAAAGGATCA 58.885 45.455 4.46 0.00 39.15 2.92
4123 4342 2.461110 GCCGTGCTCCCATACAACG 61.461 63.158 0.00 0.00 0.00 4.10
4184 4405 2.856231 AGGATATTGTTAAGGGTGGCCA 59.144 45.455 0.00 0.00 0.00 5.36
4251 4493 8.025270 TCATGGCCATTGAAGATTATCATTTT 57.975 30.769 17.92 0.00 0.00 1.82
4254 4496 6.951778 TGATCATGGCCATTGAAGATTATCAT 59.048 34.615 17.92 0.00 0.00 2.45
4278 4520 3.313249 TCTCGGTGATGCAGCAAAATATG 59.687 43.478 6.05 0.00 0.00 1.78
4299 4541 7.915923 TCACGAAATTGAGAGTGATAGTGTATC 59.084 37.037 0.00 0.00 38.52 2.24
4300 4542 7.772166 TCACGAAATTGAGAGTGATAGTGTAT 58.228 34.615 0.00 0.00 38.52 2.29
4314 4556 8.815141 AAATGTTCATGATTTCACGAAATTGA 57.185 26.923 6.47 4.96 40.77 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.