Multiple sequence alignment - TraesCS7B01G063700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G063700 chr7B 100.000 3327 0 0 1 3327 69353620 69356946 0.000000e+00 6144.0
1 TraesCS7B01G063700 chr7B 88.040 694 57 16 2609 3284 403734689 403734004 0.000000e+00 798.0
2 TraesCS7B01G063700 chr7B 87.536 698 61 15 2618 3296 675865679 675866369 0.000000e+00 784.0
3 TraesCS7B01G063700 chr7B 90.769 585 52 2 1 585 714611659 714612241 0.000000e+00 780.0
4 TraesCS7B01G063700 chr7D 92.366 1441 68 22 588 2017 110285147 110286556 0.000000e+00 2013.0
5 TraesCS7B01G063700 chr7D 91.149 949 52 11 877 1824 110220247 110221164 0.000000e+00 1258.0
6 TraesCS7B01G063700 chr7D 93.723 685 31 6 2630 3302 531992915 531992231 0.000000e+00 1016.0
7 TraesCS7B01G063700 chr7D 92.137 585 44 2 1 585 439631735 439631153 0.000000e+00 824.0
8 TraesCS7B01G063700 chr7D 90.117 597 33 8 1821 2402 110241742 110242327 0.000000e+00 752.0
9 TraesCS7B01G063700 chr7D 97.239 326 9 0 2077 2402 110286562 110286887 1.350000e-153 553.0
10 TraesCS7B01G063700 chr7D 89.764 254 19 5 588 837 110220005 110220255 5.360000e-83 318.0
11 TraesCS7B01G063700 chr7D 96.491 57 2 0 2451 2507 110286909 110286965 9.830000e-16 95.3
12 TraesCS7B01G063700 chr7A 93.932 791 29 6 1575 2351 115503954 115504739 0.000000e+00 1177.0
13 TraesCS7B01G063700 chr7A 90.562 890 46 14 732 1598 115502797 115503671 0.000000e+00 1144.0
14 TraesCS7B01G063700 chr7A 95.902 122 5 0 2386 2507 115504745 115504866 7.280000e-47 198.0
15 TraesCS7B01G063700 chr7A 95.556 45 2 0 2565 2609 115505007 115505051 4.600000e-09 73.1
16 TraesCS7B01G063700 chr3D 94.397 696 28 7 2618 3302 549633455 549632760 0.000000e+00 1059.0
17 TraesCS7B01G063700 chr3D 91.282 585 49 2 1 585 610529698 610529116 0.000000e+00 797.0
18 TraesCS7B01G063700 chr6D 93.881 670 31 6 2639 3302 447047503 447046838 0.000000e+00 1002.0
19 TraesCS7B01G063700 chr5B 92.962 682 39 5 2630 3302 688021983 688021302 0.000000e+00 985.0
20 TraesCS7B01G063700 chr5B 91.869 578 44 3 1 578 265286928 265286354 0.000000e+00 804.0
21 TraesCS7B01G063700 chr5A 94.554 606 27 3 2700 3299 470920856 470920251 0.000000e+00 931.0
22 TraesCS7B01G063700 chr5A 89.465 579 54 4 1 579 481319305 481319876 0.000000e+00 725.0
23 TraesCS7B01G063700 chr4D 95.135 555 23 2 2749 3299 464310155 464310709 0.000000e+00 872.0
24 TraesCS7B01G063700 chr4A 94.624 558 23 3 2749 3299 13267073 13267630 0.000000e+00 857.0
25 TraesCS7B01G063700 chr2B 92.466 584 43 1 1 584 57912737 57913319 0.000000e+00 833.0
26 TraesCS7B01G063700 chr2B 90.940 585 50 2 1 585 153899491 153900072 0.000000e+00 784.0
27 TraesCS7B01G063700 chr2D 92.150 586 43 3 1 585 7178463 7177880 0.000000e+00 824.0
28 TraesCS7B01G063700 chr4B 92.083 581 44 2 5 585 595297247 595296669 0.000000e+00 817.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G063700 chr7B 69353620 69356946 3326 False 6144.000 6144 100.000000 1 3327 1 chr7B.!!$F1 3326
1 TraesCS7B01G063700 chr7B 403734004 403734689 685 True 798.000 798 88.040000 2609 3284 1 chr7B.!!$R1 675
2 TraesCS7B01G063700 chr7B 675865679 675866369 690 False 784.000 784 87.536000 2618 3296 1 chr7B.!!$F2 678
3 TraesCS7B01G063700 chr7B 714611659 714612241 582 False 780.000 780 90.769000 1 585 1 chr7B.!!$F3 584
4 TraesCS7B01G063700 chr7D 531992231 531992915 684 True 1016.000 1016 93.723000 2630 3302 1 chr7D.!!$R2 672
5 TraesCS7B01G063700 chr7D 110285147 110286965 1818 False 887.100 2013 95.365333 588 2507 3 chr7D.!!$F3 1919
6 TraesCS7B01G063700 chr7D 439631153 439631735 582 True 824.000 824 92.137000 1 585 1 chr7D.!!$R1 584
7 TraesCS7B01G063700 chr7D 110220005 110221164 1159 False 788.000 1258 90.456500 588 1824 2 chr7D.!!$F2 1236
8 TraesCS7B01G063700 chr7D 110241742 110242327 585 False 752.000 752 90.117000 1821 2402 1 chr7D.!!$F1 581
9 TraesCS7B01G063700 chr7A 115502797 115505051 2254 False 648.025 1177 93.988000 732 2609 4 chr7A.!!$F1 1877
10 TraesCS7B01G063700 chr3D 549632760 549633455 695 True 1059.000 1059 94.397000 2618 3302 1 chr3D.!!$R1 684
11 TraesCS7B01G063700 chr3D 610529116 610529698 582 True 797.000 797 91.282000 1 585 1 chr3D.!!$R2 584
12 TraesCS7B01G063700 chr6D 447046838 447047503 665 True 1002.000 1002 93.881000 2639 3302 1 chr6D.!!$R1 663
13 TraesCS7B01G063700 chr5B 688021302 688021983 681 True 985.000 985 92.962000 2630 3302 1 chr5B.!!$R2 672
14 TraesCS7B01G063700 chr5B 265286354 265286928 574 True 804.000 804 91.869000 1 578 1 chr5B.!!$R1 577
15 TraesCS7B01G063700 chr5A 470920251 470920856 605 True 931.000 931 94.554000 2700 3299 1 chr5A.!!$R1 599
16 TraesCS7B01G063700 chr5A 481319305 481319876 571 False 725.000 725 89.465000 1 579 1 chr5A.!!$F1 578
17 TraesCS7B01G063700 chr4D 464310155 464310709 554 False 872.000 872 95.135000 2749 3299 1 chr4D.!!$F1 550
18 TraesCS7B01G063700 chr4A 13267073 13267630 557 False 857.000 857 94.624000 2749 3299 1 chr4A.!!$F1 550
19 TraesCS7B01G063700 chr2B 57912737 57913319 582 False 833.000 833 92.466000 1 584 1 chr2B.!!$F1 583
20 TraesCS7B01G063700 chr2B 153899491 153900072 581 False 784.000 784 90.940000 1 585 1 chr2B.!!$F2 584
21 TraesCS7B01G063700 chr2D 7177880 7178463 583 True 824.000 824 92.150000 1 585 1 chr2D.!!$R1 584
22 TraesCS7B01G063700 chr4B 595296669 595297247 578 True 817.000 817 92.083000 5 585 1 chr4B.!!$R1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 588 0.038892 TCGACTCGTTTGTAGCCCAC 60.039 55.0 0.0 0.0 0.0 4.61 F
1335 1412 1.046472 AGGCGATACGGGACATGGAA 61.046 55.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1526 0.971447 AGTCCCGCCAGTACTTCTCC 60.971 60.0 0.0 0.0 0.00 3.71 R
2654 3177 0.883153 GTGTCATGTGCTGATTGGCA 59.117 50.0 0.0 0.0 40.15 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 7.644157 GCCTAATTAAACAGGAGAAATTTAGCG 59.356 37.037 9.37 0.00 33.42 4.26
214 215 1.127397 GTGCGTGATCAGTCATGTGTG 59.873 52.381 0.00 0.00 42.25 3.82
242 243 9.512588 AATATCCTATTATTCTCAGCCAAAGTG 57.487 33.333 0.00 0.00 0.00 3.16
310 311 8.079211 TGATTCCTACTTATGAAGTGCTAGTT 57.921 34.615 2.09 0.00 42.84 2.24
327 328 8.613482 AGTGCTAGTTTTTAGTTGAGAAAGAAC 58.387 33.333 0.00 0.00 0.00 3.01
362 363 8.136563 TCTATAGTGGTTTTGTATGTGGTGTA 57.863 34.615 0.00 0.00 0.00 2.90
363 364 8.764558 TCTATAGTGGTTTTGTATGTGGTGTAT 58.235 33.333 0.00 0.00 0.00 2.29
559 561 0.898320 GCTGAGCCTAGTCCAACTCA 59.102 55.000 0.00 0.00 37.57 3.41
560 562 1.484240 GCTGAGCCTAGTCCAACTCAT 59.516 52.381 0.00 0.00 38.41 2.90
585 587 0.242825 CTCGACTCGTTTGTAGCCCA 59.757 55.000 0.00 0.00 0.00 5.36
586 588 0.038892 TCGACTCGTTTGTAGCCCAC 60.039 55.000 0.00 0.00 0.00 4.61
617 619 3.383505 AGTTAGTTGCCCACAAAAAGACC 59.616 43.478 0.00 0.00 37.58 3.85
618 620 2.159179 AGTTGCCCACAAAAAGACCT 57.841 45.000 0.00 0.00 37.58 3.85
620 622 2.956333 AGTTGCCCACAAAAAGACCTAC 59.044 45.455 0.00 0.00 37.58 3.18
622 624 1.215673 TGCCCACAAAAAGACCTACCA 59.784 47.619 0.00 0.00 0.00 3.25
637 639 4.196971 ACCTACCACTCTTTGTGTTGAAC 58.803 43.478 0.00 0.00 44.81 3.18
733 737 6.670695 AAAAGGCCTGATAACTTTTGTGAT 57.329 33.333 5.69 0.00 41.39 3.06
870 881 1.068588 GGGTTGAAAAAGAGGGCACAC 59.931 52.381 0.00 0.00 0.00 3.82
890 949 4.082125 CACCTTTAAGCTTTGGGATGTCT 58.918 43.478 3.20 0.00 0.00 3.41
899 958 1.896220 TTGGGATGTCTGTGAAGCAC 58.104 50.000 0.00 0.00 34.56 4.40
927 986 6.973474 CGGATATATTCGTATTTGTCTCCTCC 59.027 42.308 5.16 0.00 0.00 4.30
936 995 2.364448 GTCTCCTCCCCCGAGCTT 60.364 66.667 0.00 0.00 34.49 3.74
939 998 2.042843 TCCTCCCCCGAGCTTCTC 60.043 66.667 0.00 0.00 34.49 2.87
988 1060 3.873952 GTCTTCCCAAGATTTCCAGATCG 59.126 47.826 0.00 0.00 40.18 3.69
1192 1269 1.460699 GGGTTCTTCCAGGCCAGTT 59.539 57.895 5.01 0.00 38.11 3.16
1226 1303 4.515567 GCCCCCTTTCAATTAGATACTTCG 59.484 45.833 0.00 0.00 0.00 3.79
1312 1389 1.733399 GTCAACCACGGCGTCTCTC 60.733 63.158 10.85 0.00 0.00 3.20
1335 1412 1.046472 AGGCGATACGGGACATGGAA 61.046 55.000 0.00 0.00 0.00 3.53
1382 1459 3.612247 CTGCGGAGGACAAGGTGGG 62.612 68.421 0.00 0.00 0.00 4.61
1582 1983 7.549134 GCAACTCAATCATATGATACCCGATTA 59.451 37.037 18.47 0.00 33.73 1.75
1657 2071 0.602905 GTGGTGGAGAAGTTCGTGGG 60.603 60.000 0.00 0.00 0.00 4.61
1661 2075 2.046217 GAGAAGTTCGTGGGGCCC 60.046 66.667 18.17 18.17 0.00 5.80
1904 2319 0.620556 ACAAGGGCGACTGGATCAAT 59.379 50.000 0.00 0.00 0.00 2.57
1913 2328 2.815478 GACTGGATCAATGTCGAGTCC 58.185 52.381 12.92 0.00 43.79 3.85
1914 2329 1.135139 ACTGGATCAATGTCGAGTCCG 59.865 52.381 0.00 0.00 32.62 4.79
2330 2760 1.004862 AGGCCTTCAAGCTTTAGACCC 59.995 52.381 0.00 2.04 0.00 4.46
2341 2772 2.224793 GCTTTAGACCCCAGTTCACCTT 60.225 50.000 0.00 0.00 0.00 3.50
2384 2815 2.861360 GCAGAGCAGCAAAGAAACTTGG 60.861 50.000 0.00 0.00 0.00 3.61
2435 2866 1.215244 CCTGTACTGCTGATGATGCG 58.785 55.000 0.00 0.00 0.00 4.73
2507 2946 2.706555 TTCTGCTATATCGACGCTGG 57.293 50.000 0.00 0.00 0.00 4.85
2508 2947 0.881796 TCTGCTATATCGACGCTGGG 59.118 55.000 0.00 0.00 0.00 4.45
2516 2985 1.335132 ATCGACGCTGGGTGGGTAAT 61.335 55.000 0.70 0.00 42.14 1.89
2535 3004 6.481976 GGGTAATATCATCGAAACATGACACA 59.518 38.462 0.00 0.00 35.57 3.72
2551 3020 7.040494 ACATGACACACAGATCTTAGATTCTG 58.960 38.462 15.18 15.18 43.97 3.02
2557 3026 8.538701 ACACACAGATCTTAGATTCTGAAGATT 58.461 33.333 20.31 3.75 41.43 2.40
2558 3027 9.381033 CACACAGATCTTAGATTCTGAAGATTT 57.619 33.333 20.31 9.47 41.43 2.17
2598 3120 1.923356 TCTCCATTGGCCAAAGAACC 58.077 50.000 24.71 0.00 0.00 3.62
2609 3131 0.859232 CAAAGAACCCAGTCGACACG 59.141 55.000 19.50 8.22 0.00 4.49
2610 3132 0.878961 AAAGAACCCAGTCGACACGC 60.879 55.000 19.50 0.62 0.00 5.34
2611 3133 2.023414 AAGAACCCAGTCGACACGCA 62.023 55.000 19.50 0.00 0.00 5.24
2612 3134 1.593209 GAACCCAGTCGACACGCAA 60.593 57.895 19.50 0.00 0.00 4.85
2613 3135 1.153329 AACCCAGTCGACACGCAAA 60.153 52.632 19.50 0.00 0.00 3.68
2614 3136 1.157870 AACCCAGTCGACACGCAAAG 61.158 55.000 19.50 1.40 0.00 2.77
2615 3137 2.551270 CCAGTCGACACGCAAAGC 59.449 61.111 19.50 0.00 0.00 3.51
2616 3138 1.956170 CCAGTCGACACGCAAAGCT 60.956 57.895 19.50 0.00 0.00 3.74
2654 3177 0.679960 GGATTACCGGCAACCAGCTT 60.680 55.000 0.00 0.00 44.79 3.74
2696 3219 4.501400 CCACATCAAGCACTCATATACGGA 60.501 45.833 0.00 0.00 0.00 4.69
2744 3267 7.395190 AGATTTGCATGCAGTGTATTTTCTA 57.605 32.000 21.50 0.00 0.00 2.10
2864 3387 4.545610 TCGCTTTGACAATTTCAATCACC 58.454 39.130 0.00 0.00 43.99 4.02
2926 3457 0.771127 TTGAACTCCCAGGGTCAAGG 59.229 55.000 5.01 0.00 0.00 3.61
3025 3556 6.837312 TCAATCTATTAATTCCGTGTGGGAT 58.163 36.000 0.00 0.00 46.62 3.85
3026 3557 7.287061 TCAATCTATTAATTCCGTGTGGGATT 58.713 34.615 0.00 0.00 46.62 3.01
3255 3800 4.455533 TCGCAAGAGCACAATGAAATTAGT 59.544 37.500 0.00 0.00 45.01 2.24
3300 3846 8.574196 AATGAGTGAAAAAGGTATTTTGAACG 57.426 30.769 0.00 0.00 38.62 3.95
3301 3847 7.323049 TGAGTGAAAAAGGTATTTTGAACGA 57.677 32.000 0.00 0.00 38.62 3.85
3302 3848 7.936584 TGAGTGAAAAAGGTATTTTGAACGAT 58.063 30.769 0.00 0.00 38.62 3.73
3303 3849 8.410141 TGAGTGAAAAAGGTATTTTGAACGATT 58.590 29.630 0.00 0.00 38.62 3.34
3304 3850 9.244799 GAGTGAAAAAGGTATTTTGAACGATTT 57.755 29.630 0.00 0.00 38.62 2.17
3305 3851 9.244799 AGTGAAAAAGGTATTTTGAACGATTTC 57.755 29.630 0.00 0.00 38.62 2.17
3306 3852 9.026074 GTGAAAAAGGTATTTTGAACGATTTCA 57.974 29.630 0.00 0.00 38.62 2.69
3318 3864 7.856492 TTGAACGATTTCAATTGAATGAGTG 57.144 32.000 21.10 11.92 45.08 3.51
3319 3865 6.969366 TGAACGATTTCAATTGAATGAGTGT 58.031 32.000 21.10 12.48 38.87 3.55
3320 3866 8.093659 TGAACGATTTCAATTGAATGAGTGTA 57.906 30.769 21.10 5.37 38.87 2.90
3321 3867 8.563732 TGAACGATTTCAATTGAATGAGTGTAA 58.436 29.630 21.10 4.64 38.87 2.41
3322 3868 9.559958 GAACGATTTCAATTGAATGAGTGTAAT 57.440 29.630 21.10 9.28 33.54 1.89
3323 3869 8.900511 ACGATTTCAATTGAATGAGTGTAATG 57.099 30.769 21.10 7.20 33.54 1.90
3324 3870 8.514594 ACGATTTCAATTGAATGAGTGTAATGT 58.485 29.630 21.10 7.71 33.54 2.71
3325 3871 8.791605 CGATTTCAATTGAATGAGTGTAATGTG 58.208 33.333 21.10 1.80 33.54 3.21
3326 3872 9.630098 GATTTCAATTGAATGAGTGTAATGTGT 57.370 29.630 21.10 0.00 33.54 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 2.226437 ACTGATCACGCACCAAATTGAC 59.774 45.455 0.00 0.00 0.00 3.18
242 243 2.089980 TGGAGGTGCGTCTACTCTTAC 58.910 52.381 0.00 0.00 0.00 2.34
299 300 8.827677 TCTTTCTCAACTAAAAACTAGCACTTC 58.172 33.333 0.00 0.00 0.00 3.01
357 358 8.779354 TTTTAAACATTATGGCCAAATACACC 57.221 30.769 10.96 0.00 0.00 4.16
579 581 2.337359 AACTGGAGGTTAGTGGGCTA 57.663 50.000 0.00 0.00 36.23 3.93
677 679 6.376299 TGACAAGTGTCTTCTATGGTATACGT 59.624 38.462 12.43 0.00 44.99 3.57
678 680 6.691818 GTGACAAGTGTCTTCTATGGTATACG 59.308 42.308 12.43 0.00 44.99 3.06
679 681 6.979238 GGTGACAAGTGTCTTCTATGGTATAC 59.021 42.308 12.43 0.00 44.99 1.47
680 682 6.666113 TGGTGACAAGTGTCTTCTATGGTATA 59.334 38.462 12.43 0.00 44.99 1.47
681 683 5.483937 TGGTGACAAGTGTCTTCTATGGTAT 59.516 40.000 12.43 0.00 44.99 2.73
682 684 4.836175 TGGTGACAAGTGTCTTCTATGGTA 59.164 41.667 12.43 0.00 44.99 3.25
683 685 3.646162 TGGTGACAAGTGTCTTCTATGGT 59.354 43.478 12.43 0.00 44.99 3.55
684 686 4.271696 TGGTGACAAGTGTCTTCTATGG 57.728 45.455 12.43 0.00 44.99 2.74
715 719 6.018994 CGTACCTATCACAAAAGTTATCAGGC 60.019 42.308 0.00 0.00 0.00 4.85
817 827 2.094659 CCATGCTCCACACGACGAC 61.095 63.158 0.00 0.00 0.00 4.34
853 863 2.452600 AGGTGTGCCCTCTTTTTCAA 57.547 45.000 0.00 0.00 40.71 2.69
854 864 2.452600 AAGGTGTGCCCTCTTTTTCA 57.547 45.000 0.00 0.00 45.47 2.69
870 881 4.082125 ACAGACATCCCAAAGCTTAAAGG 58.918 43.478 0.00 2.15 0.00 3.11
890 949 4.982295 CGAATATATCCGAAGTGCTTCACA 59.018 41.667 11.82 0.00 39.46 3.58
899 958 8.244802 AGGAGACAAATACGAATATATCCGAAG 58.755 37.037 0.00 0.00 0.00 3.79
936 995 1.986757 GTGAGCTGGGGAGCAGAGA 60.987 63.158 0.00 0.00 37.25 3.10
939 998 1.687146 TAGGTGAGCTGGGGAGCAG 60.687 63.158 0.00 0.00 37.25 4.24
948 1007 0.038455 ACGAGACTGGTAGGTGAGCT 59.962 55.000 0.00 0.00 0.00 4.09
988 1060 2.584261 TTCGCCATGGCTCTCTGCTC 62.584 60.000 33.07 2.52 42.39 4.26
1192 1269 0.555769 AAAGGGGGCTGTGAGTTTGA 59.444 50.000 0.00 0.00 0.00 2.69
1226 1303 2.251893 GACCACGAAACATCGAGAGAC 58.748 52.381 5.11 0.00 46.97 3.36
1283 1360 4.251246 GGTTGACCACCTGCACAA 57.749 55.556 0.00 0.00 43.29 3.33
1312 1389 3.974757 GTCCCGTATCGCCTCCGG 61.975 72.222 0.00 0.00 41.37 5.14
1374 1451 0.108138 CCGAGTAGAAGCCCACCTTG 60.108 60.000 0.00 0.00 32.78 3.61
1382 1459 0.099082 CGTGTCCTCCGAGTAGAAGC 59.901 60.000 0.00 0.00 0.00 3.86
1449 1526 0.971447 AGTCCCGCCAGTACTTCTCC 60.971 60.000 0.00 0.00 0.00 3.71
1596 1997 9.171877 ACCAAAATTAGTCAAATCAAAAAGCAA 57.828 25.926 0.00 0.00 0.00 3.91
1597 1998 8.610896 CACCAAAATTAGTCAAATCAAAAAGCA 58.389 29.630 0.00 0.00 0.00 3.91
1598 1999 8.611757 ACACCAAAATTAGTCAAATCAAAAAGC 58.388 29.630 0.00 0.00 0.00 3.51
1661 2075 1.746615 CATCCCCACGCCTCTTGTG 60.747 63.158 0.00 0.00 37.09 3.33
1664 2078 2.285368 TCCATCCCCACGCCTCTT 60.285 61.111 0.00 0.00 0.00 2.85
1934 2349 1.966451 CAGGTGGCCGAAGTTGACC 60.966 63.158 0.00 0.00 0.00 4.02
2330 2760 5.945784 TCCAAATCAGATAAAGGTGAACTGG 59.054 40.000 0.00 0.00 33.07 4.00
2384 2815 3.031736 TCCCAGTAGCTAGATCACCAAC 58.968 50.000 0.00 0.00 0.00 3.77
2466 2905 3.486383 ACGTGATTTCCACCTCACAATT 58.514 40.909 0.00 0.00 42.76 2.32
2507 2946 5.995282 TCATGTTTCGATGATATTACCCACC 59.005 40.000 0.00 0.00 0.00 4.61
2508 2947 6.481976 TGTCATGTTTCGATGATATTACCCAC 59.518 38.462 0.00 0.00 34.86 4.61
2516 2985 5.719173 TCTGTGTGTCATGTTTCGATGATA 58.281 37.500 0.00 0.00 34.86 2.15
2551 3020 7.175641 AGGCATTATGCTGTACCATAAATCTTC 59.824 37.037 17.13 0.00 44.28 2.87
2557 3026 7.257790 AGATAGGCATTATGCTGTACCATAA 57.742 36.000 17.13 6.93 44.28 1.90
2558 3027 6.127054 GGAGATAGGCATTATGCTGTACCATA 60.127 42.308 17.13 0.43 44.28 2.74
2559 3028 5.338708 GGAGATAGGCATTATGCTGTACCAT 60.339 44.000 17.13 1.97 44.28 3.55
2560 3029 4.020218 GGAGATAGGCATTATGCTGTACCA 60.020 45.833 17.13 0.00 44.28 3.25
2561 3030 4.020218 TGGAGATAGGCATTATGCTGTACC 60.020 45.833 17.13 12.68 44.28 3.34
2562 3031 5.152623 TGGAGATAGGCATTATGCTGTAC 57.847 43.478 17.13 6.95 44.28 2.90
2565 3034 4.398358 CCAATGGAGATAGGCATTATGCTG 59.602 45.833 17.13 3.21 44.28 4.41
2566 3035 4.597004 CCAATGGAGATAGGCATTATGCT 58.403 43.478 17.13 5.84 44.28 3.79
2567 3036 3.129988 GCCAATGGAGATAGGCATTATGC 59.870 47.826 8.93 8.93 46.26 3.14
2598 3120 1.891060 GAGCTTTGCGTGTCGACTGG 61.891 60.000 17.92 9.50 0.00 4.00
2654 3177 0.883153 GTGTCATGTGCTGATTGGCA 59.117 50.000 0.00 0.00 40.15 4.92
2744 3267 3.039011 GACATATGGTGGGTCCTAGTGT 58.961 50.000 7.80 0.00 37.07 3.55
2979 3510 9.743057 ATTGAACGAAATAAGTGAATTGAAACA 57.257 25.926 0.00 0.00 0.00 2.83
3299 3845 8.791605 CACATTACACTCATTCAATTGAAATCG 58.208 33.333 23.91 16.15 37.61 3.34
3300 3846 9.630098 ACACATTACACTCATTCAATTGAAATC 57.370 29.630 23.91 0.00 37.61 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.